Multiple sequence alignment - TraesCS3A01G520100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G520100 chr3A 100.000 3207 0 0 1 3207 737314938 737318144 0.000000e+00 5923.0
1 TraesCS3A01G520100 chr3A 89.899 297 25 3 1 296 341282289 341281997 8.400000e-101 377.0
2 TraesCS3A01G520100 chrUn 92.743 2260 114 13 338 2578 46263148 46265376 0.000000e+00 3219.0
3 TraesCS3A01G520100 chrUn 80.899 89 7 3 2578 2666 46266210 46266288 9.610000e-06 62.1
4 TraesCS3A01G520100 chr3B 92.325 2280 99 28 310 2578 814013316 814015530 0.000000e+00 3171.0
5 TraesCS3A01G520100 chr3B 83.962 424 53 11 2661 3080 583838335 583837923 3.000000e-105 392.0
6 TraesCS3A01G520100 chr3B 82.353 459 54 14 2671 3109 815149241 815148790 1.090000e-99 374.0
7 TraesCS3A01G520100 chr3B 93.617 47 2 1 2619 2664 814016536 814016582 5.740000e-08 69.4
8 TraesCS3A01G520100 chr7B 83.544 553 62 18 2666 3195 589950071 589949525 1.030000e-134 490.0
9 TraesCS3A01G520100 chr7B 82.703 555 61 23 2668 3202 481888620 481889159 8.110000e-126 460.0
10 TraesCS3A01G520100 chr7B 80.977 573 68 19 2668 3206 224067135 224067700 1.780000e-112 416.0
11 TraesCS3A01G520100 chr4D 82.796 558 51 17 2666 3205 483987195 483986665 1.050000e-124 457.0
12 TraesCS3A01G520100 chr5D 82.664 548 61 19 2668 3206 35221669 35222191 3.770000e-124 455.0
13 TraesCS3A01G520100 chr5D 88.372 301 28 4 1 299 95299924 95299629 3.930000e-94 355.0
14 TraesCS3A01G520100 chr5D 88.255 298 30 3 1 298 50995780 50996072 5.090000e-93 351.0
15 TraesCS3A01G520100 chr5D 88.660 291 23 9 2920 3206 354716144 354716428 2.370000e-91 346.0
16 TraesCS3A01G520100 chr5D 87.143 280 31 4 2931 3206 225590332 225590610 2.400000e-81 313.0
17 TraesCS3A01G520100 chr2D 81.058 586 59 23 2668 3206 480178115 480178695 1.380000e-113 420.0
18 TraesCS3A01G520100 chr6B 80.952 567 71 21 2668 3204 51993496 51992937 6.400000e-112 414.0
19 TraesCS3A01G520100 chr1A 80.207 581 57 34 2666 3206 568124217 568124779 1.810000e-102 383.0
20 TraesCS3A01G520100 chr1A 82.143 84 8 5 1780 1857 59137506 59137424 7.430000e-07 65.8
21 TraesCS3A01G520100 chr7D 89.899 297 23 5 1 296 488690783 488691073 3.020000e-100 375.0
22 TraesCS3A01G520100 chr7D 87.368 285 24 8 2931 3206 530642779 530642498 1.860000e-82 316.0
23 TraesCS3A01G520100 chr5B 89.562 297 26 4 1 296 6930061 6929769 3.910000e-99 372.0
24 TraesCS3A01G520100 chr3D 89.527 296 26 2 1 296 562355339 562355629 1.410000e-98 370.0
25 TraesCS3A01G520100 chr2A 89.262 298 28 2 1 297 705811444 705811150 1.410000e-98 370.0
26 TraesCS3A01G520100 chr2A 87.234 282 28 6 2931 3207 150120117 150120395 6.680000e-82 315.0
27 TraesCS3A01G520100 chr6D 88.591 298 26 6 1 296 396458960 396458669 3.930000e-94 355.0
28 TraesCS3A01G520100 chr6D 88.215 297 30 3 1 296 397352384 397352676 1.830000e-92 350.0
29 TraesCS3A01G520100 chr6D 88.849 278 27 4 2931 3206 321949359 321949634 3.960000e-89 339.0
30 TraesCS3A01G520100 chr6D 91.667 204 15 2 2666 2869 13108580 13108781 6.770000e-72 281.0
31 TraesCS3A01G520100 chr1D 86.505 289 32 7 2920 3204 39680966 39681251 8.640000e-81 311.0
32 TraesCS3A01G520100 chr1D 77.483 151 34 0 1921 2071 467936427 467936277 1.230000e-14 91.6
33 TraesCS3A01G520100 chr1D 78.512 121 24 2 1921 2040 467930655 467930536 9.540000e-11 78.7
34 TraesCS3A01G520100 chr2B 93.564 202 12 1 2668 2869 73957712 73957512 1.870000e-77 300.0
35 TraesCS3A01G520100 chr7A 77.402 562 82 24 2664 3206 705484876 705485411 3.130000e-75 292.0
36 TraesCS3A01G520100 chr1B 95.918 49 2 0 1921 1969 646176736 646176688 2.650000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G520100 chr3A 737314938 737318144 3206 False 5923.00 5923 100.000 1 3207 1 chr3A.!!$F1 3206
1 TraesCS3A01G520100 chrUn 46263148 46266288 3140 False 1640.55 3219 86.821 338 2666 2 chrUn.!!$F1 2328
2 TraesCS3A01G520100 chr3B 814013316 814016582 3266 False 1620.20 3171 92.971 310 2664 2 chr3B.!!$F1 2354
3 TraesCS3A01G520100 chr7B 589949525 589950071 546 True 490.00 490 83.544 2666 3195 1 chr7B.!!$R1 529
4 TraesCS3A01G520100 chr7B 481888620 481889159 539 False 460.00 460 82.703 2668 3202 1 chr7B.!!$F2 534
5 TraesCS3A01G520100 chr7B 224067135 224067700 565 False 416.00 416 80.977 2668 3206 1 chr7B.!!$F1 538
6 TraesCS3A01G520100 chr4D 483986665 483987195 530 True 457.00 457 82.796 2666 3205 1 chr4D.!!$R1 539
7 TraesCS3A01G520100 chr5D 35221669 35222191 522 False 455.00 455 82.664 2668 3206 1 chr5D.!!$F1 538
8 TraesCS3A01G520100 chr2D 480178115 480178695 580 False 420.00 420 81.058 2668 3206 1 chr2D.!!$F1 538
9 TraesCS3A01G520100 chr6B 51992937 51993496 559 True 414.00 414 80.952 2668 3204 1 chr6B.!!$R1 536
10 TraesCS3A01G520100 chr1A 568124217 568124779 562 False 383.00 383 80.207 2666 3206 1 chr1A.!!$F1 540
11 TraesCS3A01G520100 chr7A 705484876 705485411 535 False 292.00 292 77.402 2664 3206 1 chr7A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.023732 CAGCAACGTCGTTAGCATCG 59.976 55.0 24.32 14.03 0.0 3.84 F
80 81 0.037326 CTTCTTGGAGGTGCTGCGTA 60.037 55.0 0.00 0.00 0.0 4.42 F
237 238 0.099968 CTGCTCATCCCAACATTGCG 59.900 55.0 0.00 0.00 0.0 4.85 F
378 379 0.107066 TCCCGTACGTCTCTGCCATA 60.107 55.0 15.21 0.00 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1143 1153 0.038744 AGGCTTGGGTGATGTCCTTG 59.961 55.000 0.00 0.0 0.00 3.61 R
1724 1747 0.465705 TTGTTTGCCCGAAATTGCCA 59.534 45.000 0.00 0.0 0.00 4.92 R
1984 2010 2.529744 GGGGAGCTGGTTCCACTGT 61.530 63.158 6.50 0.0 37.68 3.55 R
2348 2374 1.219393 GTCTAGGCTTCAAGCGGCT 59.781 57.895 2.54 0.0 43.62 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.435410 CCGCGTACTGGGGGAAAC 60.435 66.667 4.92 0.00 46.67 2.78
33 34 3.336138 GGAAACCCTAGGACTTGTCTG 57.664 52.381 11.48 0.00 0.00 3.51
34 35 2.027100 GGAAACCCTAGGACTTGTCTGG 60.027 54.545 11.48 0.00 0.00 3.86
35 36 1.657804 AACCCTAGGACTTGTCTGGG 58.342 55.000 11.48 17.87 40.37 4.45
36 37 0.910088 ACCCTAGGACTTGTCTGGGC 60.910 60.000 11.48 0.00 38.23 5.36
37 38 0.909610 CCCTAGGACTTGTCTGGGCA 60.910 60.000 11.48 0.00 32.34 5.36
38 39 0.539051 CCTAGGACTTGTCTGGGCAG 59.461 60.000 1.05 0.00 0.00 4.85
39 40 0.107945 CTAGGACTTGTCTGGGCAGC 60.108 60.000 0.61 0.00 0.00 5.25
40 41 0.835971 TAGGACTTGTCTGGGCAGCA 60.836 55.000 0.00 0.00 0.00 4.41
41 42 1.228245 GGACTTGTCTGGGCAGCAA 60.228 57.895 0.00 0.00 0.00 3.91
42 43 1.518903 GGACTTGTCTGGGCAGCAAC 61.519 60.000 0.00 0.00 0.00 4.17
43 44 1.845809 GACTTGTCTGGGCAGCAACG 61.846 60.000 0.00 0.00 0.00 4.10
44 45 1.893808 CTTGTCTGGGCAGCAACGT 60.894 57.895 0.00 0.00 0.00 3.99
45 46 1.845809 CTTGTCTGGGCAGCAACGTC 61.846 60.000 0.00 0.00 0.00 4.34
46 47 3.414700 GTCTGGGCAGCAACGTCG 61.415 66.667 0.00 0.00 0.00 5.12
47 48 3.923864 TCTGGGCAGCAACGTCGT 61.924 61.111 0.00 0.00 0.00 4.34
48 49 2.972505 CTGGGCAGCAACGTCGTT 60.973 61.111 4.40 4.40 0.00 3.85
49 50 1.666553 CTGGGCAGCAACGTCGTTA 60.667 57.895 10.86 0.00 0.00 3.18
50 51 1.626654 CTGGGCAGCAACGTCGTTAG 61.627 60.000 10.86 6.73 0.00 2.34
51 52 2.474712 GGCAGCAACGTCGTTAGC 59.525 61.111 10.86 15.77 0.00 3.09
52 53 2.314647 GGCAGCAACGTCGTTAGCA 61.315 57.895 24.32 0.00 0.00 3.49
53 54 1.635663 GGCAGCAACGTCGTTAGCAT 61.636 55.000 24.32 13.00 0.00 3.79
54 55 0.247301 GCAGCAACGTCGTTAGCATC 60.247 55.000 24.32 15.75 0.00 3.91
55 56 0.023732 CAGCAACGTCGTTAGCATCG 59.976 55.000 24.32 14.03 0.00 3.84
56 57 1.295930 GCAACGTCGTTAGCATCGC 60.296 57.895 20.32 12.06 0.00 4.58
57 58 1.951181 GCAACGTCGTTAGCATCGCA 61.951 55.000 20.32 0.00 0.00 5.10
58 59 0.645355 CAACGTCGTTAGCATCGCAT 59.355 50.000 10.86 0.00 0.00 4.73
59 60 0.921347 AACGTCGTTAGCATCGCATC 59.079 50.000 9.30 0.00 0.00 3.91
60 61 0.870307 ACGTCGTTAGCATCGCATCC 60.870 55.000 0.00 0.00 0.00 3.51
61 62 1.548973 CGTCGTTAGCATCGCATCCC 61.549 60.000 0.00 0.00 0.00 3.85
62 63 0.249489 GTCGTTAGCATCGCATCCCT 60.249 55.000 0.00 0.00 0.00 4.20
63 64 0.464036 TCGTTAGCATCGCATCCCTT 59.536 50.000 0.00 0.00 0.00 3.95
64 65 0.861837 CGTTAGCATCGCATCCCTTC 59.138 55.000 0.00 0.00 0.00 3.46
65 66 1.539065 CGTTAGCATCGCATCCCTTCT 60.539 52.381 0.00 0.00 0.00 2.85
66 67 2.565841 GTTAGCATCGCATCCCTTCTT 58.434 47.619 0.00 0.00 0.00 2.52
67 68 2.245159 TAGCATCGCATCCCTTCTTG 57.755 50.000 0.00 0.00 0.00 3.02
68 69 0.465097 AGCATCGCATCCCTTCTTGG 60.465 55.000 0.00 0.00 0.00 3.61
69 70 0.464373 GCATCGCATCCCTTCTTGGA 60.464 55.000 0.00 0.00 39.18 3.53
70 71 1.590932 CATCGCATCCCTTCTTGGAG 58.409 55.000 0.00 0.00 37.96 3.86
71 72 0.471617 ATCGCATCCCTTCTTGGAGG 59.528 55.000 0.00 0.00 37.96 4.30
72 73 0.909610 TCGCATCCCTTCTTGGAGGT 60.910 55.000 0.00 0.00 38.45 3.85
73 74 0.745845 CGCATCCCTTCTTGGAGGTG 60.746 60.000 0.00 0.00 39.93 4.00
74 75 1.034292 GCATCCCTTCTTGGAGGTGC 61.034 60.000 0.00 0.00 38.45 5.01
75 76 0.622665 CATCCCTTCTTGGAGGTGCT 59.377 55.000 0.00 0.00 37.96 4.40
76 77 0.622665 ATCCCTTCTTGGAGGTGCTG 59.377 55.000 0.00 0.00 37.96 4.41
77 78 1.676967 CCCTTCTTGGAGGTGCTGC 60.677 63.158 0.00 0.00 38.35 5.25
78 79 2.037136 CCTTCTTGGAGGTGCTGCG 61.037 63.158 0.00 0.00 38.35 5.18
79 80 1.302033 CTTCTTGGAGGTGCTGCGT 60.302 57.895 0.00 0.00 0.00 5.24
80 81 0.037326 CTTCTTGGAGGTGCTGCGTA 60.037 55.000 0.00 0.00 0.00 4.42
81 82 0.037326 TTCTTGGAGGTGCTGCGTAG 60.037 55.000 0.00 0.00 0.00 3.51
82 83 1.185618 TCTTGGAGGTGCTGCGTAGT 61.186 55.000 1.53 0.00 0.00 2.73
83 84 0.737715 CTTGGAGGTGCTGCGTAGTC 60.738 60.000 1.53 0.00 0.00 2.59
84 85 2.167398 TTGGAGGTGCTGCGTAGTCC 62.167 60.000 1.53 5.63 0.00 3.85
85 86 2.202623 GAGGTGCTGCGTAGTCCG 60.203 66.667 1.53 0.00 40.40 4.79
95 96 3.730895 CGTAGTCCGCAGTAGATCG 57.269 57.895 0.00 0.00 0.00 3.69
96 97 0.235144 CGTAGTCCGCAGTAGATCGG 59.765 60.000 0.00 0.00 46.52 4.18
102 103 3.171705 CGCAGTAGATCGGAGCTTC 57.828 57.895 0.00 0.00 0.00 3.86
103 104 0.658829 CGCAGTAGATCGGAGCTTCG 60.659 60.000 8.54 8.54 0.00 3.79
104 105 0.318275 GCAGTAGATCGGAGCTTCGG 60.318 60.000 15.94 0.00 0.00 4.30
105 106 0.312416 CAGTAGATCGGAGCTTCGGG 59.688 60.000 15.94 0.00 0.00 5.14
106 107 0.106619 AGTAGATCGGAGCTTCGGGT 60.107 55.000 15.94 3.41 0.00 5.28
107 108 0.745468 GTAGATCGGAGCTTCGGGTT 59.255 55.000 15.94 2.56 0.00 4.11
108 109 0.744874 TAGATCGGAGCTTCGGGTTG 59.255 55.000 15.94 0.00 0.00 3.77
109 110 1.218316 GATCGGAGCTTCGGGTTGT 59.782 57.895 15.94 0.00 0.00 3.32
110 111 1.079127 ATCGGAGCTTCGGGTTGTG 60.079 57.895 15.94 0.00 0.00 3.33
111 112 2.521958 ATCGGAGCTTCGGGTTGTGG 62.522 60.000 15.94 0.00 0.00 4.17
112 113 2.430367 GGAGCTTCGGGTTGTGGT 59.570 61.111 0.00 0.00 0.00 4.16
113 114 1.966451 GGAGCTTCGGGTTGTGGTG 60.966 63.158 0.00 0.00 0.00 4.17
114 115 1.966451 GAGCTTCGGGTTGTGGTGG 60.966 63.158 0.00 0.00 0.00 4.61
115 116 2.203294 GCTTCGGGTTGTGGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
116 117 1.826487 GCTTCGGGTTGTGGTGGTT 60.826 57.895 0.00 0.00 0.00 3.67
117 118 1.388837 GCTTCGGGTTGTGGTGGTTT 61.389 55.000 0.00 0.00 0.00 3.27
118 119 0.383949 CTTCGGGTTGTGGTGGTTTG 59.616 55.000 0.00 0.00 0.00 2.93
119 120 0.323542 TTCGGGTTGTGGTGGTTTGT 60.324 50.000 0.00 0.00 0.00 2.83
120 121 0.323542 TCGGGTTGTGGTGGTTTGTT 60.324 50.000 0.00 0.00 0.00 2.83
121 122 0.533032 CGGGTTGTGGTGGTTTGTTT 59.467 50.000 0.00 0.00 0.00 2.83
122 123 1.470112 CGGGTTGTGGTGGTTTGTTTC 60.470 52.381 0.00 0.00 0.00 2.78
123 124 1.134640 GGGTTGTGGTGGTTTGTTTCC 60.135 52.381 0.00 0.00 0.00 3.13
124 125 1.470112 GGTTGTGGTGGTTTGTTTCCG 60.470 52.381 0.00 0.00 0.00 4.30
125 126 1.473278 GTTGTGGTGGTTTGTTTCCGA 59.527 47.619 0.00 0.00 0.00 4.55
126 127 1.835494 TGTGGTGGTTTGTTTCCGAA 58.165 45.000 0.00 0.00 0.00 4.30
127 128 1.746220 TGTGGTGGTTTGTTTCCGAAG 59.254 47.619 0.00 0.00 0.00 3.79
152 153 2.582498 CGGTCATCGCGGGTCTTC 60.582 66.667 6.13 0.00 0.00 2.87
153 154 2.202892 GGTCATCGCGGGTCTTCC 60.203 66.667 6.13 0.00 0.00 3.46
162 163 4.475527 GGGTCTTCCGCACTTTGT 57.524 55.556 0.00 0.00 33.83 2.83
163 164 2.244946 GGGTCTTCCGCACTTTGTC 58.755 57.895 0.00 0.00 33.83 3.18
164 165 1.566018 GGGTCTTCCGCACTTTGTCG 61.566 60.000 0.00 0.00 33.83 4.35
165 166 0.599204 GGTCTTCCGCACTTTGTCGA 60.599 55.000 0.00 0.00 0.00 4.20
166 167 0.784778 GTCTTCCGCACTTTGTCGAG 59.215 55.000 0.00 0.00 0.00 4.04
167 168 0.387929 TCTTCCGCACTTTGTCGAGT 59.612 50.000 0.00 0.00 0.00 4.18
168 169 1.202486 TCTTCCGCACTTTGTCGAGTT 60.202 47.619 0.00 0.00 0.00 3.01
169 170 0.934496 TTCCGCACTTTGTCGAGTTG 59.066 50.000 0.00 0.00 0.00 3.16
170 171 1.082756 CCGCACTTTGTCGAGTTGC 60.083 57.895 0.00 0.00 0.00 4.17
171 172 1.082756 CGCACTTTGTCGAGTTGCC 60.083 57.895 0.00 0.00 0.00 4.52
172 173 1.082756 GCACTTTGTCGAGTTGCCG 60.083 57.895 0.00 0.00 0.00 5.69
173 174 1.082756 CACTTTGTCGAGTTGCCGC 60.083 57.895 0.00 0.00 0.00 6.53
174 175 1.227556 ACTTTGTCGAGTTGCCGCT 60.228 52.632 0.00 0.00 0.00 5.52
175 176 1.205064 CTTTGTCGAGTTGCCGCTG 59.795 57.895 0.00 0.00 0.00 5.18
176 177 1.498865 CTTTGTCGAGTTGCCGCTGT 61.499 55.000 0.00 0.00 0.00 4.40
177 178 1.092921 TTTGTCGAGTTGCCGCTGTT 61.093 50.000 0.00 0.00 0.00 3.16
178 179 1.771073 TTGTCGAGTTGCCGCTGTTG 61.771 55.000 0.00 0.00 0.00 3.33
179 180 2.664851 TCGAGTTGCCGCTGTTGG 60.665 61.111 0.00 0.00 0.00 3.77
188 189 3.287482 CCGCTGTTGGCATTTGTTT 57.713 47.368 0.00 0.00 41.91 2.83
189 190 1.139163 CCGCTGTTGGCATTTGTTTC 58.861 50.000 0.00 0.00 41.91 2.78
190 191 1.269726 CCGCTGTTGGCATTTGTTTCT 60.270 47.619 0.00 0.00 41.91 2.52
191 192 2.472816 CGCTGTTGGCATTTGTTTCTT 58.527 42.857 0.00 0.00 41.91 2.52
192 193 2.472488 CGCTGTTGGCATTTGTTTCTTC 59.528 45.455 0.00 0.00 41.91 2.87
193 194 3.721035 GCTGTTGGCATTTGTTTCTTCT 58.279 40.909 0.00 0.00 41.35 2.85
194 195 4.122046 GCTGTTGGCATTTGTTTCTTCTT 58.878 39.130 0.00 0.00 41.35 2.52
195 196 4.209911 GCTGTTGGCATTTGTTTCTTCTTC 59.790 41.667 0.00 0.00 41.35 2.87
196 197 5.594926 CTGTTGGCATTTGTTTCTTCTTCT 58.405 37.500 0.00 0.00 0.00 2.85
197 198 5.976458 TGTTGGCATTTGTTTCTTCTTCTT 58.024 33.333 0.00 0.00 0.00 2.52
198 199 6.405538 TGTTGGCATTTGTTTCTTCTTCTTT 58.594 32.000 0.00 0.00 0.00 2.52
199 200 6.878389 TGTTGGCATTTGTTTCTTCTTCTTTT 59.122 30.769 0.00 0.00 0.00 2.27
200 201 7.390162 TGTTGGCATTTGTTTCTTCTTCTTTTT 59.610 29.630 0.00 0.00 0.00 1.94
201 202 7.538303 TGGCATTTGTTTCTTCTTCTTTTTC 57.462 32.000 0.00 0.00 0.00 2.29
202 203 7.330262 TGGCATTTGTTTCTTCTTCTTTTTCT 58.670 30.769 0.00 0.00 0.00 2.52
203 204 7.823799 TGGCATTTGTTTCTTCTTCTTTTTCTT 59.176 29.630 0.00 0.00 0.00 2.52
204 205 8.668353 GGCATTTGTTTCTTCTTCTTTTTCTTT 58.332 29.630 0.00 0.00 0.00 2.52
208 209 8.546597 TTGTTTCTTCTTCTTTTTCTTTTGGG 57.453 30.769 0.00 0.00 0.00 4.12
209 210 6.593770 TGTTTCTTCTTCTTTTTCTTTTGGGC 59.406 34.615 0.00 0.00 0.00 5.36
210 211 6.544928 TTCTTCTTCTTTTTCTTTTGGGCT 57.455 33.333 0.00 0.00 0.00 5.19
211 212 6.544928 TCTTCTTCTTTTTCTTTTGGGCTT 57.455 33.333 0.00 0.00 0.00 4.35
212 213 6.340522 TCTTCTTCTTTTTCTTTTGGGCTTG 58.659 36.000 0.00 0.00 0.00 4.01
213 214 5.930837 TCTTCTTTTTCTTTTGGGCTTGA 57.069 34.783 0.00 0.00 0.00 3.02
214 215 6.484364 TCTTCTTTTTCTTTTGGGCTTGAT 57.516 33.333 0.00 0.00 0.00 2.57
215 216 6.282930 TCTTCTTTTTCTTTTGGGCTTGATG 58.717 36.000 0.00 0.00 0.00 3.07
216 217 5.612725 TCTTTTTCTTTTGGGCTTGATGT 57.387 34.783 0.00 0.00 0.00 3.06
217 218 6.723298 TCTTTTTCTTTTGGGCTTGATGTA 57.277 33.333 0.00 0.00 0.00 2.29
218 219 6.512297 TCTTTTTCTTTTGGGCTTGATGTAC 58.488 36.000 0.00 0.00 0.00 2.90
219 220 6.323739 TCTTTTTCTTTTGGGCTTGATGTACT 59.676 34.615 0.00 0.00 0.00 2.73
220 221 5.452078 TTTCTTTTGGGCTTGATGTACTG 57.548 39.130 0.00 0.00 0.00 2.74
221 222 2.819608 TCTTTTGGGCTTGATGTACTGC 59.180 45.455 0.00 0.00 0.00 4.40
222 223 2.584835 TTTGGGCTTGATGTACTGCT 57.415 45.000 0.00 0.00 0.00 4.24
223 224 2.113860 TTGGGCTTGATGTACTGCTC 57.886 50.000 0.00 0.00 0.00 4.26
224 225 0.983467 TGGGCTTGATGTACTGCTCA 59.017 50.000 0.00 0.00 33.08 4.26
225 226 1.561076 TGGGCTTGATGTACTGCTCAT 59.439 47.619 0.00 0.00 30.23 2.90
226 227 2.216898 GGGCTTGATGTACTGCTCATC 58.783 52.381 0.00 0.00 41.16 2.92
227 228 2.216898 GGCTTGATGTACTGCTCATCC 58.783 52.381 0.00 0.00 40.38 3.51
228 229 2.216898 GCTTGATGTACTGCTCATCCC 58.783 52.381 0.00 0.00 40.38 3.85
229 230 2.420547 GCTTGATGTACTGCTCATCCCA 60.421 50.000 0.00 0.00 40.38 4.37
230 231 3.877559 CTTGATGTACTGCTCATCCCAA 58.122 45.455 0.00 0.00 40.38 4.12
231 232 3.266510 TGATGTACTGCTCATCCCAAC 57.733 47.619 0.00 0.00 40.38 3.77
232 233 2.571202 TGATGTACTGCTCATCCCAACA 59.429 45.455 0.00 0.00 40.38 3.33
233 234 3.200605 TGATGTACTGCTCATCCCAACAT 59.799 43.478 0.00 0.00 40.38 2.71
234 235 3.719268 TGTACTGCTCATCCCAACATT 57.281 42.857 0.00 0.00 0.00 2.71
235 236 3.346315 TGTACTGCTCATCCCAACATTG 58.654 45.455 0.00 0.00 0.00 2.82
236 237 1.180029 ACTGCTCATCCCAACATTGC 58.820 50.000 0.00 0.00 0.00 3.56
237 238 0.099968 CTGCTCATCCCAACATTGCG 59.900 55.000 0.00 0.00 0.00 4.85
238 239 0.322366 TGCTCATCCCAACATTGCGA 60.322 50.000 0.00 0.00 0.00 5.10
239 240 1.027357 GCTCATCCCAACATTGCGAT 58.973 50.000 0.00 0.00 0.00 4.58
240 241 1.268896 GCTCATCCCAACATTGCGATG 60.269 52.381 12.66 12.66 42.15 3.84
242 243 1.744522 TCATCCCAACATTGCGATGTG 59.255 47.619 20.40 13.51 45.58 3.21
243 244 1.473677 CATCCCAACATTGCGATGTGT 59.526 47.619 20.40 7.97 45.58 3.72
244 245 2.481289 TCCCAACATTGCGATGTGTA 57.519 45.000 20.40 3.84 45.58 2.90
245 246 2.080693 TCCCAACATTGCGATGTGTAC 58.919 47.619 20.40 0.00 45.58 2.90
246 247 1.809547 CCCAACATTGCGATGTGTACA 59.190 47.619 20.40 0.00 45.58 2.90
247 248 2.227626 CCCAACATTGCGATGTGTACAA 59.772 45.455 20.40 0.00 45.58 2.41
248 249 3.119531 CCCAACATTGCGATGTGTACAAT 60.120 43.478 20.40 0.38 45.58 2.71
251 252 3.763097 CATTGCGATGTGTACAATGGT 57.237 42.857 5.70 0.00 44.35 3.55
252 253 4.697828 AACATTGCGATGTGTACAATGGTA 59.302 37.500 20.40 0.00 46.88 3.25
253 254 4.836455 CATTGCGATGTGTACAATGGTAG 58.164 43.478 5.70 0.00 44.35 3.18
254 255 3.603158 TGCGATGTGTACAATGGTAGT 57.397 42.857 0.00 0.00 0.00 2.73
255 256 3.932822 TGCGATGTGTACAATGGTAGTT 58.067 40.909 0.00 0.00 0.00 2.24
256 257 4.320023 TGCGATGTGTACAATGGTAGTTT 58.680 39.130 0.00 0.00 0.00 2.66
257 258 4.153296 TGCGATGTGTACAATGGTAGTTTG 59.847 41.667 0.00 0.00 0.00 2.93
258 259 4.153475 GCGATGTGTACAATGGTAGTTTGT 59.847 41.667 0.00 0.00 40.30 2.83
259 260 5.334569 GCGATGTGTACAATGGTAGTTTGTT 60.335 40.000 0.00 0.00 38.26 2.83
260 261 6.664515 CGATGTGTACAATGGTAGTTTGTTT 58.335 36.000 0.00 0.00 38.26 2.83
261 262 7.136119 CGATGTGTACAATGGTAGTTTGTTTT 58.864 34.615 0.00 0.00 38.26 2.43
262 263 7.112844 CGATGTGTACAATGGTAGTTTGTTTTG 59.887 37.037 0.00 0.00 38.26 2.44
263 264 6.565234 TGTGTACAATGGTAGTTTGTTTTGG 58.435 36.000 0.00 0.00 38.26 3.28
264 265 6.377429 TGTGTACAATGGTAGTTTGTTTTGGA 59.623 34.615 0.00 0.00 38.26 3.53
265 266 7.093902 TGTGTACAATGGTAGTTTGTTTTGGAA 60.094 33.333 0.00 0.00 38.26 3.53
266 267 7.923878 GTGTACAATGGTAGTTTGTTTTGGAAT 59.076 33.333 0.00 0.00 38.26 3.01
267 268 9.132923 TGTACAATGGTAGTTTGTTTTGGAATA 57.867 29.630 0.00 0.00 38.26 1.75
268 269 9.401873 GTACAATGGTAGTTTGTTTTGGAATAC 57.598 33.333 0.00 0.00 38.26 1.89
269 270 8.012957 ACAATGGTAGTTTGTTTTGGAATACA 57.987 30.769 0.00 0.00 33.64 2.29
270 271 8.478877 ACAATGGTAGTTTGTTTTGGAATACAA 58.521 29.630 0.00 0.00 33.64 2.41
271 272 9.319143 CAATGGTAGTTTGTTTTGGAATACAAA 57.681 29.630 4.59 4.59 46.82 2.83
278 279 1.551452 TTTGGAATACAAAGCGGGGG 58.449 50.000 0.00 0.00 43.81 5.40
279 280 0.699399 TTGGAATACAAAGCGGGGGA 59.301 50.000 0.00 0.00 35.79 4.81
280 281 0.699399 TGGAATACAAAGCGGGGGAA 59.301 50.000 0.00 0.00 0.00 3.97
281 282 1.075698 TGGAATACAAAGCGGGGGAAA 59.924 47.619 0.00 0.00 0.00 3.13
282 283 1.475280 GGAATACAAAGCGGGGGAAAC 59.525 52.381 0.00 0.00 0.00 2.78
303 304 9.872721 GGAAACCCATTTTCGGTAATATTAAAA 57.127 29.630 0.00 0.00 44.20 1.52
329 330 1.079405 GGGCCGATCGTTGAACTCA 60.079 57.895 15.09 0.00 0.00 3.41
378 379 0.107066 TCCCGTACGTCTCTGCCATA 60.107 55.000 15.21 0.00 0.00 2.74
394 395 2.422746 CCATATCCCTCTTCCCCAAGT 58.577 52.381 0.00 0.00 0.00 3.16
400 401 2.721906 TCCCTCTTCCCCAAGTTTTCAT 59.278 45.455 0.00 0.00 0.00 2.57
406 407 7.421853 CCCTCTTCCCCAAGTTTTCATCTATAT 60.422 40.741 0.00 0.00 0.00 0.86
412 413 7.062957 CCCCAAGTTTTCATCTATATTCCTGT 58.937 38.462 0.00 0.00 0.00 4.00
417 418 8.107196 AGTTTTCATCTATATTCCTGTTCCCT 57.893 34.615 0.00 0.00 0.00 4.20
436 437 3.421844 CCTTTTCTTTTCGTGATCCCCT 58.578 45.455 0.00 0.00 0.00 4.79
477 478 1.080772 CGTGAAGGACTAGCACGCA 60.081 57.895 12.44 0.00 46.86 5.24
493 494 4.935205 AGCACGCATGATGTTTTCTAGTAA 59.065 37.500 0.00 0.00 0.00 2.24
532 533 6.543831 CCTATTCTTTGACACCCTCCAAATAG 59.456 42.308 0.00 0.00 32.60 1.73
564 565 2.851195 ACATATGGACGGAAATGCTCC 58.149 47.619 7.80 0.00 41.40 4.70
583 584 1.613925 CCCGATTCGCATTCTCCTCTA 59.386 52.381 0.00 0.00 0.00 2.43
587 588 1.485124 TTCGCATTCTCCTCTAGCCA 58.515 50.000 0.00 0.00 0.00 4.75
590 591 0.833287 GCATTCTCCTCTAGCCACCA 59.167 55.000 0.00 0.00 0.00 4.17
632 634 4.982295 GCAATTAAACAACACCACCTTCTC 59.018 41.667 0.00 0.00 0.00 2.87
746 753 7.259290 TGTTAGAATGTTTGGTTGAGTTCTC 57.741 36.000 0.00 0.00 0.00 2.87
859 866 4.067896 CTCCCATTTCATCTGGTAATCCG 58.932 47.826 0.00 0.00 36.30 4.18
1110 1120 1.303317 GTGGCACCCGGACAAGAAT 60.303 57.895 6.29 0.00 35.15 2.40
1143 1153 1.079057 GGACTCCGAGGCCAAGTTC 60.079 63.158 16.18 0.00 45.15 3.01
1177 1187 2.159327 AGCCTACAACGTACGCTTTT 57.841 45.000 16.72 0.00 0.00 2.27
1191 1201 4.558538 ACGCTTTTATCCATGCATTCTC 57.441 40.909 0.00 0.00 0.00 2.87
1195 1205 4.736793 GCTTTTATCCATGCATTCTCAACG 59.263 41.667 0.00 0.00 0.00 4.10
1196 1206 5.449041 GCTTTTATCCATGCATTCTCAACGA 60.449 40.000 0.00 0.00 0.00 3.85
1199 1209 3.264998 TCCATGCATTCTCAACGATGA 57.735 42.857 0.00 0.00 0.00 2.92
1210 1220 3.873361 TCTCAACGATGAATGGAATCTGC 59.127 43.478 0.00 0.00 34.49 4.26
1213 1223 3.452755 ACGATGAATGGAATCTGCGTA 57.547 42.857 0.00 0.00 31.55 4.42
1226 1236 5.409520 GGAATCTGCGTATAATGCTTGATCA 59.590 40.000 0.00 0.00 0.00 2.92
1285 1295 2.434359 GGGCAGTGTACGACCAGC 60.434 66.667 0.00 0.00 0.00 4.85
1644 1664 4.844998 TGGATTTCGCTCAAATGAAACA 57.155 36.364 0.00 0.00 36.96 2.83
1724 1747 3.896888 TGGCAAATTCTTCAAGGACACAT 59.103 39.130 0.00 0.00 0.00 3.21
1734 1757 2.228582 TCAAGGACACATGGCAATTTCG 59.771 45.455 0.00 0.00 0.00 3.46
1750 1773 3.828875 TTTCGGGCAAACAAGGATTTT 57.171 38.095 0.00 0.00 0.00 1.82
1791 1817 2.622942 TCGCTTGAAGAAATTGCCACTT 59.377 40.909 0.00 0.00 0.00 3.16
1896 1922 2.617774 GGTACGTGTCTCATAGGAGGAC 59.382 54.545 4.28 2.67 41.69 3.85
1951 1977 4.426313 CCGGGGTGGAAGAAGGGC 62.426 72.222 0.00 0.00 42.00 5.19
2184 2210 3.093172 CCAGGAGGAGGAAGCCCC 61.093 72.222 0.00 0.00 36.89 5.80
2275 2301 0.253044 CGGGGAAGCCTCAGAATTCA 59.747 55.000 8.44 0.00 0.00 2.57
2288 2314 6.677431 GCCTCAGAATTCAGTTTGATGTCATC 60.677 42.308 8.44 5.83 0.00 2.92
2348 2374 2.900273 CGAATCCTGGAGGCCGAA 59.100 61.111 1.52 0.00 34.44 4.30
2368 2394 1.215647 CCGCTTGAAGCCTAGACGT 59.784 57.895 12.13 0.00 38.18 4.34
2369 2395 0.802607 CCGCTTGAAGCCTAGACGTC 60.803 60.000 12.13 7.70 38.18 4.34
2370 2396 1.134530 CGCTTGAAGCCTAGACGTCG 61.135 60.000 12.13 0.00 38.18 5.12
2371 2397 0.802607 GCTTGAAGCCTAGACGTCGG 60.803 60.000 10.46 7.56 34.48 4.79
2396 2422 9.988815 GGTCTGAGAGATATACATGTATGTTTT 57.011 33.333 25.48 12.89 41.97 2.43
2529 2561 5.036236 ACAATTTATTAGGGTGGGCCAATT 58.964 37.500 8.40 0.00 36.17 2.32
2538 2570 1.000843 GGTGGGCCAATTGTGAGTTTC 59.999 52.381 8.40 0.00 34.09 2.78
2542 2574 1.666888 GGCCAATTGTGAGTTTCGCTG 60.667 52.381 4.43 0.00 0.00 5.18
2545 2577 0.598065 AATTGTGAGTTTCGCTGGGC 59.402 50.000 0.00 0.00 0.00 5.36
2607 3641 1.485124 GCCAAAATCTTAGGGTGGGG 58.515 55.000 0.00 0.00 0.00 4.96
2654 3688 2.439507 CACCCTACACCCTATTGCATCT 59.560 50.000 0.00 0.00 0.00 2.90
2806 3844 2.631418 TTTTTCCACACGCGTTTTCA 57.369 40.000 10.22 0.00 0.00 2.69
2808 3846 1.088306 TTTCCACACGCGTTTTCAGT 58.912 45.000 10.22 0.00 0.00 3.41
2869 3928 3.552294 GGTCTTCCTTAGCTTTTCGATCG 59.448 47.826 9.36 9.36 0.00 3.69
2952 4079 2.292292 GAGAGGCACGGTTTTGCTTTAA 59.708 45.455 0.00 0.00 42.56 1.52
3133 4288 1.134220 AGAGTCACGGTTTTGCTTCCA 60.134 47.619 0.00 0.00 0.00 3.53
3170 4325 0.385598 CTTTCGCGAGAGTCACGACA 60.386 55.000 17.92 1.93 43.69 4.35
3181 4336 3.051210 CACGACAGTGCCTCCTCA 58.949 61.111 0.00 0.00 41.94 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.604079 TTTCCCCCAGTACGCGGA 60.604 61.111 12.47 0.00 0.00 5.54
1 2 2.435410 GTTTCCCCCAGTACGCGG 60.435 66.667 12.47 0.00 0.00 6.46
2 3 2.435410 GGTTTCCCCCAGTACGCG 60.435 66.667 3.53 3.53 0.00 6.01
12 13 2.027100 CAGACAAGTCCTAGGGTTTCCC 60.027 54.545 9.46 0.00 45.90 3.97
13 14 2.027100 CCAGACAAGTCCTAGGGTTTCC 60.027 54.545 9.46 0.00 0.00 3.13
14 15 2.027100 CCCAGACAAGTCCTAGGGTTTC 60.027 54.545 9.46 4.42 34.14 2.78
15 16 1.985895 CCCAGACAAGTCCTAGGGTTT 59.014 52.381 9.46 0.57 34.14 3.27
16 17 1.657804 CCCAGACAAGTCCTAGGGTT 58.342 55.000 9.46 0.00 34.14 4.11
17 18 0.910088 GCCCAGACAAGTCCTAGGGT 60.910 60.000 9.46 0.00 38.32 4.34
18 19 0.909610 TGCCCAGACAAGTCCTAGGG 60.910 60.000 9.46 14.96 38.77 3.53
19 20 0.539051 CTGCCCAGACAAGTCCTAGG 59.461 60.000 0.82 0.82 0.00 3.02
20 21 0.107945 GCTGCCCAGACAAGTCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
21 22 0.835971 TGCTGCCCAGACAAGTCCTA 60.836 55.000 0.00 0.00 0.00 2.94
22 23 1.708993 TTGCTGCCCAGACAAGTCCT 61.709 55.000 0.00 0.00 0.00 3.85
23 24 1.228245 TTGCTGCCCAGACAAGTCC 60.228 57.895 0.00 0.00 0.00 3.85
24 25 1.845809 CGTTGCTGCCCAGACAAGTC 61.846 60.000 0.00 0.00 0.00 3.01
25 26 1.893808 CGTTGCTGCCCAGACAAGT 60.894 57.895 0.00 0.00 0.00 3.16
26 27 1.845809 GACGTTGCTGCCCAGACAAG 61.846 60.000 0.00 1.66 0.00 3.16
27 28 1.891919 GACGTTGCTGCCCAGACAA 60.892 57.895 0.00 0.86 0.00 3.18
28 29 2.280797 GACGTTGCTGCCCAGACA 60.281 61.111 0.00 0.00 0.00 3.41
29 30 3.414700 CGACGTTGCTGCCCAGAC 61.415 66.667 0.00 0.00 0.00 3.51
30 31 2.089887 TAACGACGTTGCTGCCCAGA 62.090 55.000 23.00 0.00 0.00 3.86
31 32 1.626654 CTAACGACGTTGCTGCCCAG 61.627 60.000 23.00 6.75 0.00 4.45
32 33 1.666553 CTAACGACGTTGCTGCCCA 60.667 57.895 23.00 0.08 0.00 5.36
33 34 3.023591 GCTAACGACGTTGCTGCCC 62.024 63.158 23.00 1.59 0.00 5.36
34 35 1.635663 ATGCTAACGACGTTGCTGCC 61.636 55.000 23.00 7.13 0.00 4.85
35 36 0.247301 GATGCTAACGACGTTGCTGC 60.247 55.000 23.00 21.42 0.00 5.25
36 37 0.023732 CGATGCTAACGACGTTGCTG 59.976 55.000 23.00 13.35 0.00 4.41
37 38 1.683790 GCGATGCTAACGACGTTGCT 61.684 55.000 23.00 12.97 31.79 3.91
38 39 1.295930 GCGATGCTAACGACGTTGC 60.296 57.895 23.00 21.67 0.00 4.17
39 40 0.645355 ATGCGATGCTAACGACGTTG 59.355 50.000 23.00 13.47 0.00 4.10
40 41 0.921347 GATGCGATGCTAACGACGTT 59.079 50.000 18.47 18.47 0.00 3.99
41 42 0.870307 GGATGCGATGCTAACGACGT 60.870 55.000 0.00 0.00 0.00 4.34
42 43 1.548973 GGGATGCGATGCTAACGACG 61.549 60.000 0.00 0.00 0.00 5.12
43 44 0.249489 AGGGATGCGATGCTAACGAC 60.249 55.000 0.00 0.00 0.00 4.34
44 45 0.464036 AAGGGATGCGATGCTAACGA 59.536 50.000 0.00 0.00 0.00 3.85
45 46 0.861837 GAAGGGATGCGATGCTAACG 59.138 55.000 0.00 0.00 0.00 3.18
46 47 2.246719 AGAAGGGATGCGATGCTAAC 57.753 50.000 0.00 0.00 0.00 2.34
47 48 2.564771 CAAGAAGGGATGCGATGCTAA 58.435 47.619 0.00 0.00 0.00 3.09
48 49 1.202687 CCAAGAAGGGATGCGATGCTA 60.203 52.381 0.00 0.00 0.00 3.49
49 50 0.465097 CCAAGAAGGGATGCGATGCT 60.465 55.000 0.00 0.00 0.00 3.79
50 51 0.464373 TCCAAGAAGGGATGCGATGC 60.464 55.000 0.00 0.00 38.24 3.91
51 52 1.590932 CTCCAAGAAGGGATGCGATG 58.409 55.000 0.00 0.00 36.09 3.84
52 53 0.471617 CCTCCAAGAAGGGATGCGAT 59.528 55.000 0.00 0.00 36.09 4.58
53 54 0.909610 ACCTCCAAGAAGGGATGCGA 60.910 55.000 0.00 0.00 41.04 5.10
54 55 0.745845 CACCTCCAAGAAGGGATGCG 60.746 60.000 0.00 0.00 41.04 4.73
55 56 1.034292 GCACCTCCAAGAAGGGATGC 61.034 60.000 0.00 0.00 41.04 3.91
56 57 0.622665 AGCACCTCCAAGAAGGGATG 59.377 55.000 0.00 0.00 41.04 3.51
57 58 0.622665 CAGCACCTCCAAGAAGGGAT 59.377 55.000 0.00 0.00 41.04 3.85
58 59 2.069776 CAGCACCTCCAAGAAGGGA 58.930 57.895 0.00 0.00 41.04 4.20
59 60 1.676967 GCAGCACCTCCAAGAAGGG 60.677 63.158 0.00 0.00 41.04 3.95
60 61 2.037136 CGCAGCACCTCCAAGAAGG 61.037 63.158 0.00 0.00 42.55 3.46
61 62 0.037326 TACGCAGCACCTCCAAGAAG 60.037 55.000 0.00 0.00 0.00 2.85
62 63 0.037326 CTACGCAGCACCTCCAAGAA 60.037 55.000 0.00 0.00 0.00 2.52
63 64 1.185618 ACTACGCAGCACCTCCAAGA 61.186 55.000 0.00 0.00 0.00 3.02
64 65 0.737715 GACTACGCAGCACCTCCAAG 60.738 60.000 0.00 0.00 0.00 3.61
65 66 1.292223 GACTACGCAGCACCTCCAA 59.708 57.895 0.00 0.00 0.00 3.53
66 67 2.646175 GGACTACGCAGCACCTCCA 61.646 63.158 0.00 0.00 0.00 3.86
67 68 2.184579 GGACTACGCAGCACCTCC 59.815 66.667 0.00 0.00 0.00 4.30
68 69 2.202623 CGGACTACGCAGCACCTC 60.203 66.667 0.00 0.00 34.82 3.85
84 85 0.658829 CGAAGCTCCGATCTACTGCG 60.659 60.000 0.00 0.00 0.00 5.18
85 86 0.318275 CCGAAGCTCCGATCTACTGC 60.318 60.000 0.00 0.00 0.00 4.40
86 87 0.312416 CCCGAAGCTCCGATCTACTG 59.688 60.000 0.00 0.00 0.00 2.74
87 88 0.106619 ACCCGAAGCTCCGATCTACT 60.107 55.000 0.00 0.00 0.00 2.57
88 89 0.745468 AACCCGAAGCTCCGATCTAC 59.255 55.000 0.00 0.00 0.00 2.59
89 90 0.744874 CAACCCGAAGCTCCGATCTA 59.255 55.000 0.00 0.00 0.00 1.98
90 91 1.258445 ACAACCCGAAGCTCCGATCT 61.258 55.000 0.00 0.00 0.00 2.75
91 92 1.084370 CACAACCCGAAGCTCCGATC 61.084 60.000 0.00 0.00 0.00 3.69
92 93 1.079127 CACAACCCGAAGCTCCGAT 60.079 57.895 0.00 0.00 0.00 4.18
93 94 2.342279 CACAACCCGAAGCTCCGA 59.658 61.111 0.00 0.00 0.00 4.55
94 95 2.742372 CCACAACCCGAAGCTCCG 60.742 66.667 0.00 0.00 0.00 4.63
95 96 1.966451 CACCACAACCCGAAGCTCC 60.966 63.158 0.00 0.00 0.00 4.70
96 97 1.966451 CCACCACAACCCGAAGCTC 60.966 63.158 0.00 0.00 0.00 4.09
97 98 2.113139 CCACCACAACCCGAAGCT 59.887 61.111 0.00 0.00 0.00 3.74
98 99 1.388837 AAACCACCACAACCCGAAGC 61.389 55.000 0.00 0.00 0.00 3.86
99 100 0.383949 CAAACCACCACAACCCGAAG 59.616 55.000 0.00 0.00 0.00 3.79
100 101 0.323542 ACAAACCACCACAACCCGAA 60.324 50.000 0.00 0.00 0.00 4.30
101 102 0.323542 AACAAACCACCACAACCCGA 60.324 50.000 0.00 0.00 0.00 5.14
102 103 0.533032 AAACAAACCACCACAACCCG 59.467 50.000 0.00 0.00 0.00 5.28
103 104 1.134640 GGAAACAAACCACCACAACCC 60.135 52.381 0.00 0.00 0.00 4.11
104 105 1.470112 CGGAAACAAACCACCACAACC 60.470 52.381 0.00 0.00 0.00 3.77
105 106 1.473278 TCGGAAACAAACCACCACAAC 59.527 47.619 0.00 0.00 0.00 3.32
106 107 1.835494 TCGGAAACAAACCACCACAA 58.165 45.000 0.00 0.00 0.00 3.33
107 108 1.746220 CTTCGGAAACAAACCACCACA 59.254 47.619 0.00 0.00 0.00 4.17
108 109 1.066454 CCTTCGGAAACAAACCACCAC 59.934 52.381 0.00 0.00 0.00 4.16
109 110 1.394618 CCTTCGGAAACAAACCACCA 58.605 50.000 0.00 0.00 0.00 4.17
110 111 0.671796 CCCTTCGGAAACAAACCACC 59.328 55.000 0.00 0.00 0.00 4.61
111 112 0.031585 GCCCTTCGGAAACAAACCAC 59.968 55.000 0.00 0.00 0.00 4.16
112 113 1.448922 CGCCCTTCGGAAACAAACCA 61.449 55.000 0.00 0.00 33.78 3.67
113 114 1.284715 CGCCCTTCGGAAACAAACC 59.715 57.895 0.00 0.00 33.78 3.27
114 115 1.371267 GCGCCCTTCGGAAACAAAC 60.371 57.895 0.00 0.00 38.94 2.93
115 116 1.791103 CTGCGCCCTTCGGAAACAAA 61.791 55.000 4.18 0.00 38.28 2.83
116 117 2.203224 TGCGCCCTTCGGAAACAA 60.203 55.556 4.18 0.00 38.94 2.83
117 118 2.668212 CTGCGCCCTTCGGAAACA 60.668 61.111 4.18 0.00 38.28 2.83
118 119 4.103103 GCTGCGCCCTTCGGAAAC 62.103 66.667 4.18 0.00 38.28 2.78
135 136 2.582498 GAAGACCCGCGATGACCG 60.582 66.667 8.23 0.00 42.21 4.79
136 137 2.202892 GGAAGACCCGCGATGACC 60.203 66.667 8.23 0.00 0.00 4.02
145 146 1.566018 CGACAAAGTGCGGAAGACCC 61.566 60.000 0.00 0.00 0.00 4.46
146 147 0.599204 TCGACAAAGTGCGGAAGACC 60.599 55.000 0.00 0.00 0.00 3.85
147 148 0.784778 CTCGACAAAGTGCGGAAGAC 59.215 55.000 0.00 0.00 0.00 3.01
148 149 0.387929 ACTCGACAAAGTGCGGAAGA 59.612 50.000 0.00 0.00 0.00 2.87
149 150 1.070577 CAACTCGACAAAGTGCGGAAG 60.071 52.381 0.00 0.00 0.00 3.46
150 151 0.934496 CAACTCGACAAAGTGCGGAA 59.066 50.000 0.00 0.00 0.00 4.30
151 152 1.495584 GCAACTCGACAAAGTGCGGA 61.496 55.000 0.00 0.00 0.00 5.54
152 153 1.082756 GCAACTCGACAAAGTGCGG 60.083 57.895 0.00 0.00 0.00 5.69
153 154 1.082756 GGCAACTCGACAAAGTGCG 60.083 57.895 0.00 0.00 0.00 5.34
154 155 1.082756 CGGCAACTCGACAAAGTGC 60.083 57.895 0.00 0.00 0.00 4.40
155 156 1.082756 GCGGCAACTCGACAAAGTG 60.083 57.895 0.00 0.00 0.00 3.16
156 157 1.227556 AGCGGCAACTCGACAAAGT 60.228 52.632 1.45 0.00 0.00 2.66
157 158 1.205064 CAGCGGCAACTCGACAAAG 59.795 57.895 1.45 0.00 0.00 2.77
158 159 1.092921 AACAGCGGCAACTCGACAAA 61.093 50.000 1.45 0.00 0.00 2.83
159 160 1.522806 AACAGCGGCAACTCGACAA 60.523 52.632 1.45 0.00 0.00 3.18
160 161 2.108157 AACAGCGGCAACTCGACA 59.892 55.556 1.45 0.00 0.00 4.35
161 162 2.551270 CAACAGCGGCAACTCGAC 59.449 61.111 1.45 0.00 0.00 4.20
162 163 2.664851 CCAACAGCGGCAACTCGA 60.665 61.111 1.45 0.00 0.00 4.04
172 173 3.721035 AGAAGAAACAAATGCCAACAGC 58.279 40.909 0.00 0.00 44.14 4.40
173 174 5.594926 AGAAGAAGAAACAAATGCCAACAG 58.405 37.500 0.00 0.00 0.00 3.16
174 175 5.596836 AGAAGAAGAAACAAATGCCAACA 57.403 34.783 0.00 0.00 0.00 3.33
175 176 6.908870 AAAGAAGAAGAAACAAATGCCAAC 57.091 33.333 0.00 0.00 0.00 3.77
176 177 7.823799 AGAAAAAGAAGAAGAAACAAATGCCAA 59.176 29.630 0.00 0.00 0.00 4.52
177 178 7.330262 AGAAAAAGAAGAAGAAACAAATGCCA 58.670 30.769 0.00 0.00 0.00 4.92
178 179 7.776933 AGAAAAAGAAGAAGAAACAAATGCC 57.223 32.000 0.00 0.00 0.00 4.40
182 183 8.998377 CCCAAAAGAAAAAGAAGAAGAAACAAA 58.002 29.630 0.00 0.00 0.00 2.83
183 184 7.119116 GCCCAAAAGAAAAAGAAGAAGAAACAA 59.881 33.333 0.00 0.00 0.00 2.83
184 185 6.593770 GCCCAAAAGAAAAAGAAGAAGAAACA 59.406 34.615 0.00 0.00 0.00 2.83
185 186 6.818644 AGCCCAAAAGAAAAAGAAGAAGAAAC 59.181 34.615 0.00 0.00 0.00 2.78
186 187 6.946340 AGCCCAAAAGAAAAAGAAGAAGAAA 58.054 32.000 0.00 0.00 0.00 2.52
187 188 6.544928 AGCCCAAAAGAAAAAGAAGAAGAA 57.455 33.333 0.00 0.00 0.00 2.52
188 189 6.154363 TCAAGCCCAAAAGAAAAAGAAGAAGA 59.846 34.615 0.00 0.00 0.00 2.87
189 190 6.340522 TCAAGCCCAAAAGAAAAAGAAGAAG 58.659 36.000 0.00 0.00 0.00 2.85
190 191 6.293004 TCAAGCCCAAAAGAAAAAGAAGAA 57.707 33.333 0.00 0.00 0.00 2.52
191 192 5.930837 TCAAGCCCAAAAGAAAAAGAAGA 57.069 34.783 0.00 0.00 0.00 2.87
192 193 6.051074 ACATCAAGCCCAAAAGAAAAAGAAG 58.949 36.000 0.00 0.00 0.00 2.85
193 194 5.988287 ACATCAAGCCCAAAAGAAAAAGAA 58.012 33.333 0.00 0.00 0.00 2.52
194 195 5.612725 ACATCAAGCCCAAAAGAAAAAGA 57.387 34.783 0.00 0.00 0.00 2.52
195 196 6.421801 CAGTACATCAAGCCCAAAAGAAAAAG 59.578 38.462 0.00 0.00 0.00 2.27
196 197 6.279882 CAGTACATCAAGCCCAAAAGAAAAA 58.720 36.000 0.00 0.00 0.00 1.94
197 198 5.738783 GCAGTACATCAAGCCCAAAAGAAAA 60.739 40.000 0.00 0.00 0.00 2.29
198 199 4.261994 GCAGTACATCAAGCCCAAAAGAAA 60.262 41.667 0.00 0.00 0.00 2.52
199 200 3.255642 GCAGTACATCAAGCCCAAAAGAA 59.744 43.478 0.00 0.00 0.00 2.52
200 201 2.819608 GCAGTACATCAAGCCCAAAAGA 59.180 45.455 0.00 0.00 0.00 2.52
201 202 2.821969 AGCAGTACATCAAGCCCAAAAG 59.178 45.455 0.00 0.00 0.00 2.27
202 203 2.819608 GAGCAGTACATCAAGCCCAAAA 59.180 45.455 0.00 0.00 0.00 2.44
203 204 2.224744 TGAGCAGTACATCAAGCCCAAA 60.225 45.455 0.00 0.00 0.00 3.28
204 205 1.350684 TGAGCAGTACATCAAGCCCAA 59.649 47.619 0.00 0.00 0.00 4.12
205 206 0.983467 TGAGCAGTACATCAAGCCCA 59.017 50.000 0.00 0.00 0.00 5.36
206 207 2.216898 GATGAGCAGTACATCAAGCCC 58.783 52.381 0.00 0.00 42.28 5.19
207 208 2.216898 GGATGAGCAGTACATCAAGCC 58.783 52.381 0.00 0.00 43.84 4.35
208 209 2.216898 GGGATGAGCAGTACATCAAGC 58.783 52.381 0.00 0.00 43.84 4.01
209 210 3.548745 TGGGATGAGCAGTACATCAAG 57.451 47.619 0.00 0.00 43.84 3.02
210 211 3.008923 TGTTGGGATGAGCAGTACATCAA 59.991 43.478 0.00 0.00 43.84 2.57
211 212 2.571202 TGTTGGGATGAGCAGTACATCA 59.429 45.455 0.00 0.00 43.84 3.07
212 213 3.266510 TGTTGGGATGAGCAGTACATC 57.733 47.619 0.00 0.00 42.07 3.06
213 214 3.939740 ATGTTGGGATGAGCAGTACAT 57.060 42.857 0.00 0.00 0.00 2.29
214 215 3.346315 CAATGTTGGGATGAGCAGTACA 58.654 45.455 0.00 0.00 0.00 2.90
215 216 2.098117 GCAATGTTGGGATGAGCAGTAC 59.902 50.000 0.00 0.00 0.00 2.73
216 217 2.368439 GCAATGTTGGGATGAGCAGTA 58.632 47.619 0.00 0.00 0.00 2.74
217 218 1.180029 GCAATGTTGGGATGAGCAGT 58.820 50.000 0.00 0.00 0.00 4.40
218 219 0.099968 CGCAATGTTGGGATGAGCAG 59.900 55.000 3.97 0.00 43.04 4.24
219 220 0.322366 TCGCAATGTTGGGATGAGCA 60.322 50.000 8.23 0.00 43.92 4.26
220 221 2.481212 TCGCAATGTTGGGATGAGC 58.519 52.632 8.23 0.00 43.92 4.26
226 227 1.809547 TGTACACATCGCAATGTTGGG 59.190 47.619 0.00 3.65 43.74 4.12
227 228 3.550950 TTGTACACATCGCAATGTTGG 57.449 42.857 0.00 0.00 43.74 3.77
228 229 3.853103 CCATTGTACACATCGCAATGTTG 59.147 43.478 13.22 0.00 43.74 3.33
229 230 3.505680 ACCATTGTACACATCGCAATGTT 59.494 39.130 13.22 0.00 43.74 2.71
231 232 3.763097 ACCATTGTACACATCGCAATG 57.237 42.857 0.00 8.89 45.18 2.82
232 233 4.513442 ACTACCATTGTACACATCGCAAT 58.487 39.130 0.00 0.00 33.64 3.56
233 234 3.932822 ACTACCATTGTACACATCGCAA 58.067 40.909 0.00 0.00 0.00 4.85
234 235 3.603158 ACTACCATTGTACACATCGCA 57.397 42.857 0.00 0.00 0.00 5.10
235 236 4.153475 ACAAACTACCATTGTACACATCGC 59.847 41.667 0.00 0.00 39.14 4.58
236 237 5.856126 ACAAACTACCATTGTACACATCG 57.144 39.130 0.00 0.00 39.14 3.84
237 238 7.381139 CCAAAACAAACTACCATTGTACACATC 59.619 37.037 0.00 0.00 39.98 3.06
238 239 7.068839 TCCAAAACAAACTACCATTGTACACAT 59.931 33.333 0.00 0.00 39.98 3.21
239 240 6.377429 TCCAAAACAAACTACCATTGTACACA 59.623 34.615 0.00 0.00 39.98 3.72
240 241 6.797454 TCCAAAACAAACTACCATTGTACAC 58.203 36.000 0.00 0.00 39.98 2.90
241 242 7.406031 TTCCAAAACAAACTACCATTGTACA 57.594 32.000 0.00 0.00 39.98 2.90
242 243 9.401873 GTATTCCAAAACAAACTACCATTGTAC 57.598 33.333 0.00 0.00 39.98 2.90
243 244 9.132923 TGTATTCCAAAACAAACTACCATTGTA 57.867 29.630 0.00 0.00 39.98 2.41
244 245 8.012957 TGTATTCCAAAACAAACTACCATTGT 57.987 30.769 0.00 0.00 42.56 2.71
245 246 8.879342 TTGTATTCCAAAACAAACTACCATTG 57.121 30.769 0.00 0.00 32.86 2.82
246 247 9.541143 CTTTGTATTCCAAAACAAACTACCATT 57.459 29.630 0.00 0.00 42.31 3.16
247 248 7.655732 GCTTTGTATTCCAAAACAAACTACCAT 59.344 33.333 0.00 0.00 42.31 3.55
248 249 6.981559 GCTTTGTATTCCAAAACAAACTACCA 59.018 34.615 0.00 0.00 42.31 3.25
249 250 6.143278 CGCTTTGTATTCCAAAACAAACTACC 59.857 38.462 0.00 0.00 42.31 3.18
250 251 6.143278 CCGCTTTGTATTCCAAAACAAACTAC 59.857 38.462 0.00 0.00 42.31 2.73
251 252 6.210078 CCGCTTTGTATTCCAAAACAAACTA 58.790 36.000 0.00 0.00 42.31 2.24
252 253 5.047188 CCGCTTTGTATTCCAAAACAAACT 58.953 37.500 0.00 0.00 42.31 2.66
253 254 4.210328 CCCGCTTTGTATTCCAAAACAAAC 59.790 41.667 0.00 0.00 42.31 2.93
254 255 4.372656 CCCGCTTTGTATTCCAAAACAAA 58.627 39.130 0.00 0.00 42.31 2.83
255 256 3.243907 CCCCGCTTTGTATTCCAAAACAA 60.244 43.478 0.00 0.00 42.31 2.83
256 257 2.297597 CCCCGCTTTGTATTCCAAAACA 59.702 45.455 0.00 0.00 42.31 2.83
257 258 2.353307 CCCCCGCTTTGTATTCCAAAAC 60.353 50.000 0.00 0.00 42.31 2.43
258 259 1.896465 CCCCCGCTTTGTATTCCAAAA 59.104 47.619 0.00 0.00 42.31 2.44
259 260 1.075698 TCCCCCGCTTTGTATTCCAAA 59.924 47.619 0.00 0.00 40.71 3.28
260 261 0.699399 TCCCCCGCTTTGTATTCCAA 59.301 50.000 0.00 0.00 0.00 3.53
261 262 0.699399 TTCCCCCGCTTTGTATTCCA 59.301 50.000 0.00 0.00 0.00 3.53
262 263 1.475280 GTTTCCCCCGCTTTGTATTCC 59.525 52.381 0.00 0.00 0.00 3.01
263 264 1.475280 GGTTTCCCCCGCTTTGTATTC 59.525 52.381 0.00 0.00 0.00 1.75
264 265 1.552578 GGTTTCCCCCGCTTTGTATT 58.447 50.000 0.00 0.00 0.00 1.89
265 266 0.323999 GGGTTTCCCCCGCTTTGTAT 60.324 55.000 0.00 0.00 45.80 2.29
266 267 1.075305 GGGTTTCCCCCGCTTTGTA 59.925 57.895 0.00 0.00 45.80 2.41
267 268 2.203582 GGGTTTCCCCCGCTTTGT 60.204 61.111 0.00 0.00 45.80 2.83
276 277 6.474140 AATATTACCGAAAATGGGTTTCCC 57.526 37.500 0.00 0.00 42.39 3.97
277 278 9.872721 TTTTAATATTACCGAAAATGGGTTTCC 57.127 29.630 0.00 0.00 42.39 3.13
303 304 0.538746 AACGATCGGCCCAGGTTTTT 60.539 50.000 20.98 0.00 0.00 1.94
304 305 1.074248 AACGATCGGCCCAGGTTTT 59.926 52.632 20.98 0.00 0.00 2.43
305 306 1.674322 CAACGATCGGCCCAGGTTT 60.674 57.895 20.98 0.00 0.00 3.27
306 307 2.046314 CAACGATCGGCCCAGGTT 60.046 61.111 20.98 0.00 0.00 3.50
307 308 2.589157 TTCAACGATCGGCCCAGGT 61.589 57.895 20.98 0.00 0.00 4.00
308 309 2.106683 GTTCAACGATCGGCCCAGG 61.107 63.158 20.98 2.00 0.00 4.45
309 310 1.079127 AGTTCAACGATCGGCCCAG 60.079 57.895 20.98 4.21 0.00 4.45
310 311 1.079405 GAGTTCAACGATCGGCCCA 60.079 57.895 20.98 0.00 0.00 5.36
311 312 0.462047 ATGAGTTCAACGATCGGCCC 60.462 55.000 20.98 2.31 0.00 5.80
312 313 0.931005 GATGAGTTCAACGATCGGCC 59.069 55.000 20.98 0.00 0.00 6.13
313 314 1.640428 TGATGAGTTCAACGATCGGC 58.360 50.000 20.98 4.06 0.00 5.54
329 330 5.713389 AGGATGTTCATGTCAATGTGTTGAT 59.287 36.000 0.00 0.00 45.46 2.57
370 371 1.734655 GGGAAGAGGGATATGGCAGA 58.265 55.000 0.00 0.00 0.00 4.26
378 379 2.721906 TGAAAACTTGGGGAAGAGGGAT 59.278 45.455 0.00 0.00 0.00 3.85
394 395 9.768215 AAAAGGGAACAGGAATATAGATGAAAA 57.232 29.630 0.00 0.00 0.00 2.29
400 401 9.462606 GAAAAGAAAAGGGAACAGGAATATAGA 57.537 33.333 0.00 0.00 0.00 1.98
406 407 4.097286 CACGAAAAGAAAAGGGAACAGGAA 59.903 41.667 0.00 0.00 0.00 3.36
412 413 3.824443 GGGATCACGAAAAGAAAAGGGAA 59.176 43.478 0.00 0.00 0.00 3.97
417 418 3.071479 CGAGGGGATCACGAAAAGAAAA 58.929 45.455 0.00 0.00 0.00 2.29
436 437 3.958147 TGCTTGTCATAACCCTAGATCGA 59.042 43.478 0.00 0.00 0.00 3.59
477 478 9.732130 AGAAAAGCTCTTACTAGAAAACATCAT 57.268 29.630 0.00 0.00 0.00 2.45
493 494 7.606073 GTCAAAGAATAGGAGAAGAAAAGCTCT 59.394 37.037 0.00 0.00 35.13 4.09
532 533 3.471680 GTCCATATGTTTCTCCCTGCTC 58.528 50.000 1.24 0.00 0.00 4.26
564 565 2.924454 GCTAGAGGAGAATGCGAATCGG 60.924 54.545 4.35 0.00 0.00 4.18
583 584 5.574188 ACAATTAGAGATCTTTTGGTGGCT 58.426 37.500 0.00 0.00 0.00 4.75
587 588 8.635765 TTGCTTACAATTAGAGATCTTTTGGT 57.364 30.769 0.00 0.00 0.00 3.67
632 634 5.816777 ACACAACCAAACAAGATTGAATTGG 59.183 36.000 21.98 21.98 45.36 3.16
746 753 4.633126 ACAACATTTGATCGATCTGACCAG 59.367 41.667 25.02 12.75 0.00 4.00
795 802 4.078537 TCATGAAAGATCGCCAAAGGAAA 58.921 39.130 0.00 0.00 0.00 3.13
859 866 2.645730 TGACAGTTGTTTGGTTGCAC 57.354 45.000 0.00 0.00 0.00 4.57
1143 1153 0.038744 AGGCTTGGGTGATGTCCTTG 59.961 55.000 0.00 0.00 0.00 3.61
1177 1187 4.959723 TCATCGTTGAGAATGCATGGATA 58.040 39.130 0.00 0.00 0.00 2.59
1191 1201 2.352651 ACGCAGATTCCATTCATCGTTG 59.647 45.455 0.00 0.00 0.00 4.10
1195 1205 6.093219 AGCATTATACGCAGATTCCATTCATC 59.907 38.462 0.00 0.00 0.00 2.92
1196 1206 5.942236 AGCATTATACGCAGATTCCATTCAT 59.058 36.000 0.00 0.00 0.00 2.57
1199 1209 5.764686 TCAAGCATTATACGCAGATTCCATT 59.235 36.000 0.00 0.00 0.00 3.16
1202 1212 5.409520 TGATCAAGCATTATACGCAGATTCC 59.590 40.000 0.00 0.00 0.00 3.01
1210 1220 7.919313 AAGCAAAATGATCAAGCATTATACG 57.081 32.000 0.00 0.00 37.50 3.06
1213 1223 6.237996 CGCAAAGCAAAATGATCAAGCATTAT 60.238 34.615 0.00 0.00 37.50 1.28
1226 1236 2.297033 ACCTGATCACGCAAAGCAAAAT 59.703 40.909 0.00 0.00 0.00 1.82
1285 1295 3.174265 GAGCCCCTCCTCCCCATG 61.174 72.222 0.00 0.00 0.00 3.66
1660 1683 3.060607 GCACAAAAACGTTCGATTTGCAT 60.061 39.130 19.02 3.48 37.52 3.96
1724 1747 0.465705 TTGTTTGCCCGAAATTGCCA 59.534 45.000 0.00 0.00 0.00 4.92
1734 1757 3.069443 TCACAGAAAATCCTTGTTTGCCC 59.931 43.478 0.00 0.00 0.00 5.36
1807 1833 6.803320 AGCATGTCAAATCGACTGTTTTTATG 59.197 34.615 0.00 0.00 45.60 1.90
1951 1977 3.935993 AGGGAACGTGATCTTGGTG 57.064 52.632 0.00 0.00 0.00 4.17
1984 2010 2.529744 GGGGAGCTGGTTCCACTGT 61.530 63.158 6.50 0.00 37.68 3.55
2275 2301 2.571653 TCCGGGAAGATGACATCAAACT 59.428 45.455 17.57 0.00 0.00 2.66
2348 2374 1.219393 GTCTAGGCTTCAAGCGGCT 59.781 57.895 2.54 0.00 43.62 5.52
2368 2394 7.168905 ACATACATGTATATCTCTCAGACCGA 58.831 38.462 17.86 0.00 39.68 4.69
2369 2395 7.384439 ACATACATGTATATCTCTCAGACCG 57.616 40.000 17.86 4.07 39.68 4.79
2370 2396 9.988815 AAAACATACATGTATATCTCTCAGACC 57.011 33.333 17.86 0.00 40.80 3.85
2458 2488 9.542462 GGTGATGTAGCTCTATTTACAAACATA 57.458 33.333 0.00 0.00 33.85 2.29
2459 2489 7.499232 GGGTGATGTAGCTCTATTTACAAACAT 59.501 37.037 0.00 0.00 33.85 2.71
2460 2490 6.821665 GGGTGATGTAGCTCTATTTACAAACA 59.178 38.462 0.00 0.00 33.85 2.83
2461 2491 6.018994 CGGGTGATGTAGCTCTATTTACAAAC 60.019 42.308 0.00 0.00 33.85 2.93
2462 2492 6.046593 CGGGTGATGTAGCTCTATTTACAAA 58.953 40.000 0.00 0.00 33.85 2.83
2463 2493 5.597806 CGGGTGATGTAGCTCTATTTACAA 58.402 41.667 0.00 0.00 33.85 2.41
2464 2494 4.500887 GCGGGTGATGTAGCTCTATTTACA 60.501 45.833 0.00 0.00 34.57 2.41
2529 2561 0.465460 AAAGCCCAGCGAAACTCACA 60.465 50.000 0.00 0.00 0.00 3.58
2570 2603 2.924421 GGCCAAGCCCATATAGCTATC 58.076 52.381 10.16 0.00 44.06 2.08
2612 3646 4.489771 CCCATGGTGAGACCGGGC 62.490 72.222 11.73 0.52 42.58 6.13
2614 3648 4.489771 GGCCCATGGTGAGACCGG 62.490 72.222 11.73 0.00 42.58 5.28
2615 3649 4.489771 GGGCCCATGGTGAGACCG 62.490 72.222 19.95 0.00 42.58 4.79
2952 4079 2.564975 CACGGGCGTAACTCTCGT 59.435 61.111 0.00 0.00 34.19 4.18
3112 4267 1.264288 GGAAGCAAAACCGTGACTCTG 59.736 52.381 0.00 0.00 0.00 3.35
3133 4288 2.029073 CACAACCGTGCCTCTCGT 59.971 61.111 0.00 0.00 36.06 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.