Multiple sequence alignment - TraesCS3A01G519600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G519600 chr3A 100.000 2472 0 0 1 2472 737179812 737182283 0.000000e+00 4566
1 TraesCS3A01G519600 chr3A 80.062 963 160 18 1100 2038 735981864 735980910 0.000000e+00 686
2 TraesCS3A01G519600 chr3A 100.000 289 0 0 2766 3054 737182577 737182865 4.480000e-148 534
3 TraesCS3A01G519600 chr3B 89.000 2100 164 23 344 2408 813901565 813903632 0.000000e+00 2536
4 TraesCS3A01G519600 chr3B 78.774 669 125 12 1339 1994 812682478 812681814 1.680000e-117 433
5 TraesCS3A01G519600 chr3B 93.158 190 10 2 100 288 813901048 813901235 3.000000e-70 276
6 TraesCS3A01G519600 chr3B 82.877 292 43 7 2766 3053 210607622 210607334 3.910000e-64 255
7 TraesCS3A01G519600 chr3B 88.506 174 20 0 1100 1273 812798889 812799062 8.580000e-51 211
8 TraesCS3A01G519600 chr3B 84.066 182 29 0 1100 1281 812727066 812726885 3.130000e-40 176
9 TraesCS3A01G519600 chrUn 80.454 1806 236 70 569 2304 46199483 46201241 0.000000e+00 1271
10 TraesCS3A01G519600 chrUn 81.262 1601 220 45 668 2229 46203138 46204697 0.000000e+00 1221
11 TraesCS3A01G519600 chr4D 84.513 749 105 4 1333 2071 484951858 484951111 0.000000e+00 730
12 TraesCS3A01G519600 chr4D 83.130 818 118 11 1333 2140 485043048 485042241 0.000000e+00 728
13 TraesCS3A01G519600 chr4D 83.130 818 118 11 1333 2140 485064991 485064184 0.000000e+00 728
14 TraesCS3A01G519600 chr4D 82.675 785 115 8 1328 2103 484929899 484929127 0.000000e+00 676
15 TraesCS3A01G519600 chr5A 82.338 787 119 13 1326 2099 666073523 666072744 0.000000e+00 665
16 TraesCS3A01G519600 chr5A 87.755 98 11 1 4 101 549725224 549725128 2.490000e-21 113
17 TraesCS3A01G519600 chr3D 78.803 986 183 18 1100 2066 605027069 605026091 9.230000e-180 640
18 TraesCS3A01G519600 chr3D 80.082 728 130 11 1339 2054 605034679 605035403 7.500000e-146 527
19 TraesCS3A01G519600 chr3D 83.562 292 43 5 2766 3054 594058016 594057727 5.020000e-68 268
20 TraesCS3A01G519600 chr3D 82.313 294 44 8 2766 3054 105466837 105466547 6.540000e-62 248
21 TraesCS3A01G519600 chr3D 88.889 180 20 0 1094 1273 605034388 605034567 3.960000e-54 222
22 TraesCS3A01G519600 chr2B 83.333 294 41 7 2766 3054 512372911 512373201 6.490000e-67 265
23 TraesCS3A01G519600 chr4A 82.818 291 46 4 2766 3054 672882392 672882104 1.090000e-64 257
24 TraesCS3A01G519600 chr4A 82.474 291 47 4 2766 3054 672737072 672736784 5.050000e-63 252
25 TraesCS3A01G519600 chr7D 82.534 292 45 6 2766 3054 572695539 572695251 5.050000e-63 252
26 TraesCS3A01G519600 chr6B 83.275 287 35 11 2773 3054 52814045 52813767 5.050000e-63 252
27 TraesCS3A01G519600 chr6B 88.542 96 10 1 4 99 295783240 295783146 6.920000e-22 115
28 TraesCS3A01G519600 chr4B 82.653 294 42 8 2766 3054 554322100 554322389 5.050000e-63 252
29 TraesCS3A01G519600 chr1A 95.918 98 3 1 2 99 56329780 56329684 1.130000e-34 158
30 TraesCS3A01G519600 chr1A 94.949 99 4 1 2 100 554211071 554210974 1.470000e-33 154
31 TraesCS3A01G519600 chr2A 94.118 102 5 1 1 102 14068037 14067937 1.470000e-33 154
32 TraesCS3A01G519600 chr2A 93.069 101 7 0 1 101 754024259 754024159 6.820000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G519600 chr3A 737179812 737182865 3053 False 2550.0 4566 100.0000 1 3054 2 chr3A.!!$F1 3053
1 TraesCS3A01G519600 chr3A 735980910 735981864 954 True 686.0 686 80.0620 1100 2038 1 chr3A.!!$R1 938
2 TraesCS3A01G519600 chr3B 813901048 813903632 2584 False 1406.0 2536 91.0790 100 2408 2 chr3B.!!$F2 2308
3 TraesCS3A01G519600 chr3B 812681814 812682478 664 True 433.0 433 78.7740 1339 1994 1 chr3B.!!$R2 655
4 TraesCS3A01G519600 chrUn 46199483 46204697 5214 False 1246.0 1271 80.8580 569 2304 2 chrUn.!!$F1 1735
5 TraesCS3A01G519600 chr4D 484951111 484951858 747 True 730.0 730 84.5130 1333 2071 1 chr4D.!!$R2 738
6 TraesCS3A01G519600 chr4D 485042241 485043048 807 True 728.0 728 83.1300 1333 2140 1 chr4D.!!$R3 807
7 TraesCS3A01G519600 chr4D 485064184 485064991 807 True 728.0 728 83.1300 1333 2140 1 chr4D.!!$R4 807
8 TraesCS3A01G519600 chr4D 484929127 484929899 772 True 676.0 676 82.6750 1328 2103 1 chr4D.!!$R1 775
9 TraesCS3A01G519600 chr5A 666072744 666073523 779 True 665.0 665 82.3380 1326 2099 1 chr5A.!!$R2 773
10 TraesCS3A01G519600 chr3D 605026091 605027069 978 True 640.0 640 78.8030 1100 2066 1 chr3D.!!$R3 966
11 TraesCS3A01G519600 chr3D 605034388 605035403 1015 False 374.5 527 84.4855 1094 2054 2 chr3D.!!$F1 960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 1234 0.106519 GTCCCCATGCAATACAGCCT 60.107 55.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2765 6709 0.18135 GGGGTGGCCTCAAGTCTATG 59.819 60.0 3.32 0.0 0.0 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.806949 TGGTTAAAATCTGGACCTGCT 57.193 42.857 0.00 0.00 33.33 4.24
24 25 4.919774 TGGTTAAAATCTGGACCTGCTA 57.080 40.909 0.00 0.00 33.33 3.49
25 26 5.249780 TGGTTAAAATCTGGACCTGCTAA 57.750 39.130 0.00 0.00 33.33 3.09
26 27 5.826643 TGGTTAAAATCTGGACCTGCTAAT 58.173 37.500 0.00 0.00 33.33 1.73
27 28 5.652014 TGGTTAAAATCTGGACCTGCTAATG 59.348 40.000 0.00 0.00 33.33 1.90
28 29 5.652452 GGTTAAAATCTGGACCTGCTAATGT 59.348 40.000 0.00 0.00 0.00 2.71
29 30 6.826741 GGTTAAAATCTGGACCTGCTAATGTA 59.173 38.462 0.00 0.00 0.00 2.29
30 31 7.201705 GGTTAAAATCTGGACCTGCTAATGTAC 60.202 40.741 0.00 0.00 0.00 2.90
31 32 4.423625 AATCTGGACCTGCTAATGTACC 57.576 45.455 0.00 0.00 0.00 3.34
32 33 1.754803 TCTGGACCTGCTAATGTACCG 59.245 52.381 0.00 0.00 0.00 4.02
33 34 1.754803 CTGGACCTGCTAATGTACCGA 59.245 52.381 0.00 0.00 0.00 4.69
34 35 2.167693 CTGGACCTGCTAATGTACCGAA 59.832 50.000 0.00 0.00 0.00 4.30
35 36 2.568062 TGGACCTGCTAATGTACCGAAA 59.432 45.455 0.00 0.00 0.00 3.46
36 37 2.934553 GGACCTGCTAATGTACCGAAAC 59.065 50.000 0.00 0.00 0.00 2.78
37 38 3.369157 GGACCTGCTAATGTACCGAAACT 60.369 47.826 0.00 0.00 0.00 2.66
38 39 4.142093 GGACCTGCTAATGTACCGAAACTA 60.142 45.833 0.00 0.00 0.00 2.24
39 40 5.452917 GGACCTGCTAATGTACCGAAACTAT 60.453 44.000 0.00 0.00 0.00 2.12
40 41 5.357257 ACCTGCTAATGTACCGAAACTATG 58.643 41.667 0.00 0.00 0.00 2.23
41 42 5.105064 ACCTGCTAATGTACCGAAACTATGT 60.105 40.000 0.00 0.00 0.00 2.29
42 43 6.097270 ACCTGCTAATGTACCGAAACTATGTA 59.903 38.462 0.00 0.00 0.00 2.29
43 44 7.152645 CCTGCTAATGTACCGAAACTATGTAT 58.847 38.462 0.00 0.00 0.00 2.29
44 45 7.116376 CCTGCTAATGTACCGAAACTATGTATG 59.884 40.741 0.00 0.00 0.00 2.39
45 46 6.926826 TGCTAATGTACCGAAACTATGTATGG 59.073 38.462 0.00 0.00 0.00 2.74
46 47 7.149973 GCTAATGTACCGAAACTATGTATGGA 58.850 38.462 0.00 0.00 0.00 3.41
47 48 7.328737 GCTAATGTACCGAAACTATGTATGGAG 59.671 40.741 0.00 0.00 0.00 3.86
48 49 5.524971 TGTACCGAAACTATGTATGGAGG 57.475 43.478 0.00 0.00 0.00 4.30
49 50 5.202765 TGTACCGAAACTATGTATGGAGGA 58.797 41.667 0.00 0.00 0.00 3.71
50 51 5.836898 TGTACCGAAACTATGTATGGAGGAT 59.163 40.000 0.00 0.00 0.00 3.24
51 52 5.470047 ACCGAAACTATGTATGGAGGATC 57.530 43.478 0.00 0.00 0.00 3.36
52 53 5.148502 ACCGAAACTATGTATGGAGGATCT 58.851 41.667 0.00 0.00 33.73 2.75
53 54 5.244178 ACCGAAACTATGTATGGAGGATCTC 59.756 44.000 0.00 0.00 33.73 2.75
63 64 4.409257 AGGATCTCCCTCCAAGCC 57.591 61.111 0.00 0.00 43.31 4.35
64 65 1.764054 AGGATCTCCCTCCAAGCCG 60.764 63.158 0.00 0.00 43.31 5.52
65 66 1.762460 GGATCTCCCTCCAAGCCGA 60.762 63.158 0.00 0.00 35.24 5.54
66 67 1.745264 GATCTCCCTCCAAGCCGAG 59.255 63.158 0.00 0.00 0.00 4.63
67 68 2.376228 GATCTCCCTCCAAGCCGAGC 62.376 65.000 0.00 0.00 0.00 5.03
68 69 3.393970 CTCCCTCCAAGCCGAGCA 61.394 66.667 0.00 0.00 0.00 4.26
69 70 2.927856 TCCCTCCAAGCCGAGCAA 60.928 61.111 0.00 0.00 0.00 3.91
70 71 2.747855 CCCTCCAAGCCGAGCAAC 60.748 66.667 0.00 0.00 0.00 4.17
71 72 3.121030 CCTCCAAGCCGAGCAACG 61.121 66.667 0.00 0.00 42.18 4.10
72 73 2.048222 CTCCAAGCCGAGCAACGA 60.048 61.111 4.96 0.00 45.77 3.85
73 74 1.667830 CTCCAAGCCGAGCAACGAA 60.668 57.895 4.96 0.00 45.77 3.85
74 75 1.227704 TCCAAGCCGAGCAACGAAA 60.228 52.632 4.96 0.00 45.77 3.46
75 76 0.605319 TCCAAGCCGAGCAACGAAAT 60.605 50.000 4.96 0.00 45.77 2.17
76 77 0.240945 CCAAGCCGAGCAACGAAATT 59.759 50.000 4.96 0.00 45.77 1.82
77 78 1.606606 CAAGCCGAGCAACGAAATTC 58.393 50.000 4.96 0.00 45.77 2.17
78 79 0.521735 AAGCCGAGCAACGAAATTCC 59.478 50.000 4.96 0.00 45.77 3.01
79 80 1.136774 GCCGAGCAACGAAATTCCC 59.863 57.895 4.96 0.00 45.77 3.97
80 81 1.305930 GCCGAGCAACGAAATTCCCT 61.306 55.000 4.96 0.00 45.77 4.20
81 82 1.165270 CCGAGCAACGAAATTCCCTT 58.835 50.000 4.96 0.00 45.77 3.95
82 83 1.539827 CCGAGCAACGAAATTCCCTTT 59.460 47.619 4.96 0.00 45.77 3.11
83 84 2.745281 CCGAGCAACGAAATTCCCTTTA 59.255 45.455 4.96 0.00 45.77 1.85
84 85 3.189702 CCGAGCAACGAAATTCCCTTTAA 59.810 43.478 4.96 0.00 45.77 1.52
85 86 4.156182 CGAGCAACGAAATTCCCTTTAAC 58.844 43.478 0.00 0.00 45.77 2.01
86 87 4.482386 GAGCAACGAAATTCCCTTTAACC 58.518 43.478 0.00 0.00 0.00 2.85
87 88 3.257375 AGCAACGAAATTCCCTTTAACCC 59.743 43.478 0.00 0.00 0.00 4.11
88 89 3.615592 GCAACGAAATTCCCTTTAACCCC 60.616 47.826 0.00 0.00 0.00 4.95
89 90 2.439409 ACGAAATTCCCTTTAACCCCG 58.561 47.619 0.00 0.00 0.00 5.73
90 91 1.133598 CGAAATTCCCTTTAACCCCGC 59.866 52.381 0.00 0.00 0.00 6.13
91 92 2.172679 GAAATTCCCTTTAACCCCGCA 58.827 47.619 0.00 0.00 0.00 5.69
92 93 2.312424 AATTCCCTTTAACCCCGCAA 57.688 45.000 0.00 0.00 0.00 4.85
93 94 2.312424 ATTCCCTTTAACCCCGCAAA 57.688 45.000 0.00 0.00 0.00 3.68
94 95 2.083628 TTCCCTTTAACCCCGCAAAA 57.916 45.000 0.00 0.00 0.00 2.44
95 96 2.312424 TCCCTTTAACCCCGCAAAAT 57.688 45.000 0.00 0.00 0.00 1.82
96 97 3.453059 TCCCTTTAACCCCGCAAAATA 57.547 42.857 0.00 0.00 0.00 1.40
97 98 3.775910 TCCCTTTAACCCCGCAAAATAA 58.224 40.909 0.00 0.00 0.00 1.40
98 99 4.158015 TCCCTTTAACCCCGCAAAATAAA 58.842 39.130 0.00 0.00 0.00 1.40
110 111 8.755028 ACCCCGCAAAATAAAAACTTATCTTAT 58.245 29.630 0.00 0.00 0.00 1.73
152 153 9.537192 AACCGATTCGTTAAATCATGTTAGATA 57.463 29.630 5.20 0.00 43.44 1.98
222 224 2.431057 TCTAGAAACATCCGGAGAAGCC 59.569 50.000 11.34 0.00 0.00 4.35
223 225 1.280457 AGAAACATCCGGAGAAGCCT 58.720 50.000 11.34 1.12 0.00 4.58
224 226 1.630878 AGAAACATCCGGAGAAGCCTT 59.369 47.619 11.34 0.00 0.00 4.35
236 238 3.120165 GGAGAAGCCTTTTCTAAAGCACG 60.120 47.826 0.00 0.00 0.00 5.34
249 251 6.119144 TCTAAAGCACGGAAGAATTATTGC 57.881 37.500 0.00 0.00 0.00 3.56
262 264 5.380043 AGAATTATTGCCGATGGATTCACT 58.620 37.500 0.00 0.00 30.33 3.41
270 272 5.924356 TGCCGATGGATTCACTAGAATTTA 58.076 37.500 0.00 0.00 44.30 1.40
272 274 6.183360 TGCCGATGGATTCACTAGAATTTAGA 60.183 38.462 0.00 0.00 44.30 2.10
308 310 9.109393 GACATAATCATACTGGTTCTTTTGCTA 57.891 33.333 0.00 0.00 0.00 3.49
315 317 9.515226 TCATACTGGTTCTTTTGCTATAGTTTT 57.485 29.630 0.84 0.00 0.00 2.43
389 671 8.973182 TGGTTTGGAAATTAACTCTTTAACACT 58.027 29.630 0.00 0.00 29.77 3.55
490 775 1.134220 CAAAACATAGAGCCGGCCCTA 60.134 52.381 26.15 23.34 0.00 3.53
495 780 1.968493 CATAGAGCCGGCCCTAAGTTA 59.032 52.381 22.45 0.00 0.00 2.24
496 781 2.393630 TAGAGCCGGCCCTAAGTTAT 57.606 50.000 26.15 0.00 0.00 1.89
501 786 0.878961 CCGGCCCTAAGTTATGCGAC 60.879 60.000 0.00 0.00 0.00 5.19
502 787 0.179094 CGGCCCTAAGTTATGCGACA 60.179 55.000 0.00 0.00 0.00 4.35
503 788 1.741055 CGGCCCTAAGTTATGCGACAA 60.741 52.381 0.00 0.00 0.00 3.18
504 789 2.361789 GGCCCTAAGTTATGCGACAAA 58.638 47.619 0.00 0.00 0.00 2.83
505 790 2.949644 GGCCCTAAGTTATGCGACAAAT 59.050 45.455 0.00 0.00 0.00 2.32
506 791 4.131596 GGCCCTAAGTTATGCGACAAATA 58.868 43.478 0.00 0.00 0.00 1.40
507 792 4.577283 GGCCCTAAGTTATGCGACAAATAA 59.423 41.667 0.00 0.00 0.00 1.40
508 793 5.240844 GGCCCTAAGTTATGCGACAAATAAT 59.759 40.000 0.00 0.00 0.00 1.28
509 794 6.428771 GGCCCTAAGTTATGCGACAAATAATA 59.571 38.462 0.00 0.00 0.00 0.98
510 795 7.040961 GGCCCTAAGTTATGCGACAAATAATAA 60.041 37.037 0.00 0.00 0.00 1.40
511 796 8.015658 GCCCTAAGTTATGCGACAAATAATAAG 58.984 37.037 0.00 0.00 0.00 1.73
512 797 9.268268 CCCTAAGTTATGCGACAAATAATAAGA 57.732 33.333 0.00 0.00 0.00 2.10
516 801 8.018677 AGTTATGCGACAAATAATAAGATCGG 57.981 34.615 0.00 0.00 0.00 4.18
517 802 7.656137 AGTTATGCGACAAATAATAAGATCGGT 59.344 33.333 0.00 0.00 0.00 4.69
518 803 5.900339 TGCGACAAATAATAAGATCGGTC 57.100 39.130 0.00 0.00 0.00 4.79
519 804 4.748102 TGCGACAAATAATAAGATCGGTCC 59.252 41.667 0.00 0.00 0.00 4.46
520 805 4.989168 GCGACAAATAATAAGATCGGTCCT 59.011 41.667 0.00 0.00 0.00 3.85
521 806 5.118817 GCGACAAATAATAAGATCGGTCCTC 59.881 44.000 0.00 0.00 0.00 3.71
522 807 6.213677 CGACAAATAATAAGATCGGTCCTCA 58.786 40.000 0.00 0.00 0.00 3.86
562 847 1.003118 GGTAGGCCCATCGATTGCATA 59.997 52.381 16.21 11.66 0.00 3.14
590 875 7.936847 AGGAAAATATATTCGGTGCATTCTACA 59.063 33.333 0.00 0.00 0.00 2.74
687 978 0.687354 TGGTGCTTTCTCCTCCTGTC 59.313 55.000 0.00 0.00 0.00 3.51
693 984 1.001406 CTTTCTCCTCCTGTCGTGCTT 59.999 52.381 0.00 0.00 0.00 3.91
707 1002 0.310543 GTGCTTCCGTGCAACATCAA 59.689 50.000 0.00 0.00 45.12 2.57
739 1034 9.886132 AAAATGTGTAGACGAATCTAATTACCT 57.114 29.630 0.00 0.00 39.20 3.08
743 1038 6.576684 GTGTAGACGAATCTAATTACCTACGC 59.423 42.308 0.00 0.00 39.20 4.42
766 1061 2.554462 CAAAGCTCGATCTCTCCGGATA 59.446 50.000 3.57 0.00 0.00 2.59
787 1082 0.933097 CTGCGATGCTAAGCGATGTT 59.067 50.000 0.00 0.00 37.39 2.71
788 1083 1.328680 CTGCGATGCTAAGCGATGTTT 59.671 47.619 0.00 0.00 37.39 2.83
891 1215 5.279910 CCTGAGCATCTTTCCCTCCTATAAG 60.280 48.000 0.00 0.00 34.92 1.73
910 1234 0.106519 GTCCCCATGCAATACAGCCT 60.107 55.000 0.00 0.00 0.00 4.58
917 1241 2.869101 TGCAATACAGCCTTACACCA 57.131 45.000 0.00 0.00 0.00 4.17
957 1286 0.981943 ACCCACTAGCCACACTTACC 59.018 55.000 0.00 0.00 0.00 2.85
958 1287 0.981183 CCCACTAGCCACACTTACCA 59.019 55.000 0.00 0.00 0.00 3.25
965 1294 2.729194 AGCCACACTTACCAAACACAA 58.271 42.857 0.00 0.00 0.00 3.33
970 1299 5.040635 CCACACTTACCAAACACAAATCAC 58.959 41.667 0.00 0.00 0.00 3.06
975 1304 7.122948 ACACTTACCAAACACAAATCACCTAAA 59.877 33.333 0.00 0.00 0.00 1.85
977 1306 7.340999 ACTTACCAAACACAAATCACCTAAACT 59.659 33.333 0.00 0.00 0.00 2.66
984 1313 7.668525 ACACAAATCACCTAAACTAGCTTAC 57.331 36.000 0.00 0.00 0.00 2.34
989 1318 6.869206 ATCACCTAAACTAGCTTACCTCAA 57.131 37.500 0.00 0.00 0.00 3.02
1005 1334 3.573309 CCTCAAGAAGGTAGCAATGGCG 61.573 54.545 0.00 0.00 42.21 5.69
1032 1367 4.073201 CCTATGGGAGTGGTGGCT 57.927 61.111 0.00 0.00 33.58 4.75
1058 1393 1.379710 TGGTGCTGGTTGTGCTGTT 60.380 52.632 0.00 0.00 0.00 3.16
1060 1395 1.028905 GGTGCTGGTTGTGCTGTTTA 58.971 50.000 0.00 0.00 0.00 2.01
1063 1398 1.028905 GCTGGTTGTGCTGTTTACCA 58.971 50.000 0.00 0.00 38.29 3.25
1071 1406 0.533308 TGCTGTTTACCACCGTGTCC 60.533 55.000 0.00 0.00 0.00 4.02
1149 1484 2.757077 CGGTTTGGGAAGAGGGCT 59.243 61.111 0.00 0.00 0.00 5.19
1224 1559 3.064324 GACAAGCGCTGCCCCAAT 61.064 61.111 12.58 0.00 0.00 3.16
1230 1565 2.360350 CGCTGCCCCAATGAGTGT 60.360 61.111 0.00 0.00 0.00 3.55
1233 1568 1.181098 GCTGCCCCAATGAGTGTGTT 61.181 55.000 0.00 0.00 0.00 3.32
1289 1650 4.021102 AGCATCCTAATTTGTATCCCCG 57.979 45.455 0.00 0.00 0.00 5.73
1290 1651 3.650942 AGCATCCTAATTTGTATCCCCGA 59.349 43.478 0.00 0.00 0.00 5.14
1295 1656 4.825085 TCCTAATTTGTATCCCCGAAATGC 59.175 41.667 0.00 0.00 0.00 3.56
1302 1663 0.631212 ATCCCCGAAATGCCCTTCTT 59.369 50.000 0.00 0.00 0.00 2.52
1303 1664 1.291109 TCCCCGAAATGCCCTTCTTA 58.709 50.000 0.00 0.00 0.00 2.10
1305 1666 1.956477 CCCCGAAATGCCCTTCTTATG 59.044 52.381 0.00 0.00 0.00 1.90
1307 1668 2.618709 CCCGAAATGCCCTTCTTATGAC 59.381 50.000 0.00 0.00 0.00 3.06
1310 1671 3.689161 CGAAATGCCCTTCTTATGACACA 59.311 43.478 0.00 0.00 0.00 3.72
1311 1672 4.201851 CGAAATGCCCTTCTTATGACACAG 60.202 45.833 0.00 0.00 0.00 3.66
1314 1675 5.894298 ATGCCCTTCTTATGACACAGATA 57.106 39.130 0.00 0.00 0.00 1.98
1455 1841 2.828520 ACTTCTGTGTCATCTCCGATGT 59.171 45.455 4.01 0.00 0.00 3.06
1750 5682 5.278957 GCTTAAGGGTGTGTTTGACATCATT 60.279 40.000 4.29 0.00 42.31 2.57
1954 5886 1.973281 GCCTGTGATGGGTGGTGTG 60.973 63.158 0.00 0.00 0.00 3.82
1987 5919 1.006043 TCCTCCGACATCTTCTCCACT 59.994 52.381 0.00 0.00 0.00 4.00
2072 6004 7.530426 AACTAAGCCATTTCTCAAGACAAAT 57.470 32.000 0.00 0.00 0.00 2.32
2084 6016 8.939201 TTCTCAAGACAAATATCACTCTGATC 57.061 34.615 0.00 0.00 38.26 2.92
2167 6109 7.235935 ACATCCATTTGTGACAGAAATCAAT 57.764 32.000 7.56 2.56 0.00 2.57
2177 6119 3.696548 GACAGAAATCAATGACCTTCCCC 59.303 47.826 3.97 0.00 0.00 4.81
2191 6133 4.604156 ACCTTCCCCTGAGAAATGAAATC 58.396 43.478 0.00 0.00 0.00 2.17
2199 6141 6.459298 CCCCTGAGAAATGAAATCATCTTTCG 60.459 42.308 0.00 0.00 35.10 3.46
2211 6153 4.241590 TCATCTTTCGTGCTGCAAATTT 57.758 36.364 2.77 0.00 0.00 1.82
2216 6158 7.384660 TCATCTTTCGTGCTGCAAATTTTAATT 59.615 29.630 2.77 0.00 0.00 1.40
2230 6172 8.390354 GCAAATTTTAATTGTGCTTTCCTATCC 58.610 33.333 11.58 0.00 33.58 2.59
2241 6183 3.670627 GCTTTCCTATCCGTGCAGTTTTG 60.671 47.826 0.00 0.00 0.00 2.44
2245 6187 3.252215 TCCTATCCGTGCAGTTTTGTTTG 59.748 43.478 0.00 0.00 0.00 2.93
2246 6188 2.507339 ATCCGTGCAGTTTTGTTTGG 57.493 45.000 0.00 0.00 0.00 3.28
2247 6189 1.178276 TCCGTGCAGTTTTGTTTGGT 58.822 45.000 0.00 0.00 0.00 3.67
2249 6191 1.403514 CCGTGCAGTTTTGTTTGGTGT 60.404 47.619 0.00 0.00 0.00 4.16
2250 6192 1.653114 CGTGCAGTTTTGTTTGGTGTG 59.347 47.619 0.00 0.00 0.00 3.82
2251 6193 2.669670 CGTGCAGTTTTGTTTGGTGTGA 60.670 45.455 0.00 0.00 0.00 3.58
2252 6194 3.520569 GTGCAGTTTTGTTTGGTGTGAT 58.479 40.909 0.00 0.00 0.00 3.06
2253 6195 3.306703 GTGCAGTTTTGTTTGGTGTGATG 59.693 43.478 0.00 0.00 0.00 3.07
2254 6196 2.284952 GCAGTTTTGTTTGGTGTGATGC 59.715 45.455 0.00 0.00 0.00 3.91
2255 6197 2.535166 CAGTTTTGTTTGGTGTGATGCG 59.465 45.455 0.00 0.00 0.00 4.73
2257 6199 3.068024 AGTTTTGTTTGGTGTGATGCGAT 59.932 39.130 0.00 0.00 0.00 4.58
2258 6200 2.702898 TTGTTTGGTGTGATGCGATG 57.297 45.000 0.00 0.00 0.00 3.84
2259 6201 1.603456 TGTTTGGTGTGATGCGATGT 58.397 45.000 0.00 0.00 0.00 3.06
2261 6203 2.031245 TGTTTGGTGTGATGCGATGTTC 60.031 45.455 0.00 0.00 0.00 3.18
2268 6210 4.685628 GGTGTGATGCGATGTTCAAAATTT 59.314 37.500 0.00 0.00 0.00 1.82
2273 6215 4.970472 TGCGATGTTCAAAATTTGCTTC 57.030 36.364 0.00 0.00 0.00 3.86
2282 6224 6.127366 TGTTCAAAATTTGCTTCAGGTCTTCT 60.127 34.615 0.00 0.00 0.00 2.85
2288 6230 4.696479 TTGCTTCAGGTCTTCTTCTTCT 57.304 40.909 0.00 0.00 0.00 2.85
2339 6281 2.961526 TAATTCAGAGTCGCTCCACC 57.038 50.000 3.66 0.00 0.00 4.61
2352 6294 2.295253 CTCCACCGAGCGATTTAAGT 57.705 50.000 0.00 0.00 0.00 2.24
2367 6311 6.653183 CGATTTAAGTGTCATGCTCATAAGG 58.347 40.000 0.00 0.00 0.00 2.69
2373 6317 3.628942 GTGTCATGCTCATAAGGCAATCA 59.371 43.478 0.00 0.00 43.14 2.57
2376 6320 4.337555 GTCATGCTCATAAGGCAATCACTT 59.662 41.667 0.00 0.00 43.14 3.16
2414 6358 9.132923 TCTTATGACTGTAACTAATAGGTCAGG 57.867 37.037 8.75 0.00 37.18 3.86
2415 6359 8.834004 TTATGACTGTAACTAATAGGTCAGGT 57.166 34.615 8.75 0.00 37.18 4.00
2416 6360 9.925545 TTATGACTGTAACTAATAGGTCAGGTA 57.074 33.333 8.75 0.62 37.18 3.08
2417 6361 7.876936 TGACTGTAACTAATAGGTCAGGTAG 57.123 40.000 8.75 0.00 31.43 3.18
2418 6362 7.408543 TGACTGTAACTAATAGGTCAGGTAGT 58.591 38.462 8.75 0.00 31.43 2.73
2419 6363 8.551440 TGACTGTAACTAATAGGTCAGGTAGTA 58.449 37.037 8.75 0.00 31.43 1.82
2420 6364 9.401058 GACTGTAACTAATAGGTCAGGTAGTAA 57.599 37.037 8.75 0.00 0.00 2.24
2421 6365 9.759473 ACTGTAACTAATAGGTCAGGTAGTAAA 57.241 33.333 8.75 0.00 0.00 2.01
2423 6367 9.979897 TGTAACTAATAGGTCAGGTAGTAAAGA 57.020 33.333 0.00 0.00 0.00 2.52
2426 6370 9.710818 AACTAATAGGTCAGGTAGTAAAGATGA 57.289 33.333 0.00 0.00 0.00 2.92
2427 6371 9.710818 ACTAATAGGTCAGGTAGTAAAGATGAA 57.289 33.333 0.00 0.00 0.00 2.57
2429 6373 8.611051 AATAGGTCAGGTAGTAAAGATGAAGT 57.389 34.615 0.00 0.00 0.00 3.01
2430 6374 9.710818 AATAGGTCAGGTAGTAAAGATGAAGTA 57.289 33.333 0.00 0.00 0.00 2.24
2431 6375 7.407393 AGGTCAGGTAGTAAAGATGAAGTAC 57.593 40.000 0.00 0.00 0.00 2.73
2432 6376 6.952358 AGGTCAGGTAGTAAAGATGAAGTACA 59.048 38.462 0.00 0.00 0.00 2.90
2433 6377 7.620094 AGGTCAGGTAGTAAAGATGAAGTACAT 59.380 37.037 0.00 0.00 42.47 2.29
2434 6378 8.258708 GGTCAGGTAGTAAAGATGAAGTACATT 58.741 37.037 0.00 0.00 39.56 2.71
2450 6394 9.031537 TGAAGTACATTATTTCTAGTGAGTCCA 57.968 33.333 0.00 0.00 0.00 4.02
2452 6396 9.823647 AAGTACATTATTTCTAGTGAGTCCATG 57.176 33.333 0.00 0.00 0.00 3.66
2453 6397 9.201989 AGTACATTATTTCTAGTGAGTCCATGA 57.798 33.333 0.00 0.00 0.00 3.07
2454 6398 9.817809 GTACATTATTTCTAGTGAGTCCATGAA 57.182 33.333 0.00 0.00 0.00 2.57
2456 6400 9.334947 ACATTATTTCTAGTGAGTCCATGAATG 57.665 33.333 0.00 0.00 0.00 2.67
2457 6401 9.334947 CATTATTTCTAGTGAGTCCATGAATGT 57.665 33.333 0.00 0.00 0.00 2.71
2460 6404 8.723942 ATTTCTAGTGAGTCCATGAATGTAAC 57.276 34.615 0.00 0.00 0.00 2.50
2461 6405 6.850752 TCTAGTGAGTCCATGAATGTAACA 57.149 37.500 0.00 0.00 0.00 2.41
2462 6406 7.239763 TCTAGTGAGTCCATGAATGTAACAA 57.760 36.000 0.00 0.00 0.00 2.83
2463 6407 7.676004 TCTAGTGAGTCCATGAATGTAACAAA 58.324 34.615 0.00 0.00 0.00 2.83
2464 6408 8.321353 TCTAGTGAGTCCATGAATGTAACAAAT 58.679 33.333 0.00 0.00 0.00 2.32
2465 6409 7.765695 AGTGAGTCCATGAATGTAACAAATT 57.234 32.000 0.00 0.00 0.00 1.82
2466 6410 7.596494 AGTGAGTCCATGAATGTAACAAATTG 58.404 34.615 0.00 0.00 0.00 2.32
2467 6411 7.448161 AGTGAGTCCATGAATGTAACAAATTGA 59.552 33.333 0.00 0.00 0.00 2.57
2468 6412 8.246180 GTGAGTCCATGAATGTAACAAATTGAT 58.754 33.333 0.00 0.00 0.00 2.57
2469 6413 8.461222 TGAGTCCATGAATGTAACAAATTGATC 58.539 33.333 0.00 0.00 0.00 2.92
2470 6414 7.775120 AGTCCATGAATGTAACAAATTGATCC 58.225 34.615 0.00 0.00 0.00 3.36
2471 6415 7.396907 AGTCCATGAATGTAACAAATTGATCCA 59.603 33.333 0.00 0.00 0.00 3.41
2783 6727 3.788672 CATAGACTTGAGGCCACCC 57.211 57.895 5.01 0.00 0.00 4.61
2784 6728 0.181350 CATAGACTTGAGGCCACCCC 59.819 60.000 5.01 0.00 0.00 4.95
2785 6729 0.988678 ATAGACTTGAGGCCACCCCC 60.989 60.000 5.01 0.00 0.00 5.40
2786 6730 2.119847 TAGACTTGAGGCCACCCCCT 62.120 60.000 5.01 0.00 38.12 4.79
2787 6731 2.452491 ACTTGAGGCCACCCCCTT 60.452 61.111 5.01 0.00 34.69 3.95
2788 6732 1.151677 ACTTGAGGCCACCCCCTTA 60.152 57.895 5.01 0.00 34.69 2.69
2789 6733 0.552615 ACTTGAGGCCACCCCCTTAT 60.553 55.000 5.01 0.00 34.69 1.73
2790 6734 0.183731 CTTGAGGCCACCCCCTTATC 59.816 60.000 5.01 0.00 34.69 1.75
2791 6735 0.253630 TTGAGGCCACCCCCTTATCT 60.254 55.000 5.01 0.00 34.69 1.98
2792 6736 0.645496 TGAGGCCACCCCCTTATCTA 59.355 55.000 5.01 0.00 34.69 1.98
2793 6737 1.353091 GAGGCCACCCCCTTATCTAG 58.647 60.000 5.01 0.00 34.69 2.43
2794 6738 0.768609 AGGCCACCCCCTTATCTAGC 60.769 60.000 5.01 0.00 0.00 3.42
2795 6739 1.761822 GCCACCCCCTTATCTAGCC 59.238 63.158 0.00 0.00 0.00 3.93
2796 6740 1.060163 GCCACCCCCTTATCTAGCCA 61.060 60.000 0.00 0.00 0.00 4.75
2797 6741 0.765510 CCACCCCCTTATCTAGCCAC 59.234 60.000 0.00 0.00 0.00 5.01
2798 6742 1.695989 CCACCCCCTTATCTAGCCACT 60.696 57.143 0.00 0.00 0.00 4.00
2799 6743 1.694696 CACCCCCTTATCTAGCCACTC 59.305 57.143 0.00 0.00 0.00 3.51
2800 6744 1.294068 ACCCCCTTATCTAGCCACTCA 59.706 52.381 0.00 0.00 0.00 3.41
2801 6745 2.089925 ACCCCCTTATCTAGCCACTCAT 60.090 50.000 0.00 0.00 0.00 2.90
2802 6746 2.982488 CCCCCTTATCTAGCCACTCATT 59.018 50.000 0.00 0.00 0.00 2.57
2803 6747 3.395941 CCCCCTTATCTAGCCACTCATTT 59.604 47.826 0.00 0.00 0.00 2.32
2804 6748 4.141158 CCCCCTTATCTAGCCACTCATTTT 60.141 45.833 0.00 0.00 0.00 1.82
2805 6749 5.449553 CCCCTTATCTAGCCACTCATTTTT 58.550 41.667 0.00 0.00 0.00 1.94
2806 6750 5.300286 CCCCTTATCTAGCCACTCATTTTTG 59.700 44.000 0.00 0.00 0.00 2.44
2807 6751 5.221126 CCCTTATCTAGCCACTCATTTTTGC 60.221 44.000 0.00 0.00 0.00 3.68
2808 6752 5.357878 CCTTATCTAGCCACTCATTTTTGCA 59.642 40.000 0.00 0.00 0.00 4.08
2809 6753 6.040166 CCTTATCTAGCCACTCATTTTTGCAT 59.960 38.462 0.00 0.00 0.00 3.96
2810 6754 4.707030 TCTAGCCACTCATTTTTGCATG 57.293 40.909 0.00 0.00 0.00 4.06
2811 6755 2.754946 AGCCACTCATTTTTGCATGG 57.245 45.000 0.00 0.00 0.00 3.66
2812 6756 1.081094 GCCACTCATTTTTGCATGGC 58.919 50.000 7.86 7.86 45.26 4.40
2813 6757 1.352114 CCACTCATTTTTGCATGGCG 58.648 50.000 0.00 0.00 0.00 5.69
2814 6758 1.067706 CCACTCATTTTTGCATGGCGA 60.068 47.619 0.00 0.00 0.00 5.54
2815 6759 2.417651 CCACTCATTTTTGCATGGCGAT 60.418 45.455 0.00 0.00 0.00 4.58
2816 6760 3.255725 CACTCATTTTTGCATGGCGATT 58.744 40.909 0.00 0.00 0.00 3.34
2817 6761 3.305094 CACTCATTTTTGCATGGCGATTC 59.695 43.478 0.00 0.00 0.00 2.52
2818 6762 3.056678 ACTCATTTTTGCATGGCGATTCA 60.057 39.130 0.00 0.00 0.00 2.57
2819 6763 4.116961 CTCATTTTTGCATGGCGATTCAT 58.883 39.130 0.00 0.00 0.00 2.57
2820 6764 3.866327 TCATTTTTGCATGGCGATTCATG 59.134 39.130 0.00 8.74 45.26 3.07
2826 6770 2.281140 CATGGCGATTCATGCAAACA 57.719 45.000 0.00 0.00 38.16 2.83
2827 6771 2.190161 CATGGCGATTCATGCAAACAG 58.810 47.619 0.00 0.00 38.16 3.16
2828 6772 1.246649 TGGCGATTCATGCAAACAGT 58.753 45.000 0.00 0.00 0.00 3.55
2829 6773 1.612950 TGGCGATTCATGCAAACAGTT 59.387 42.857 0.00 0.00 0.00 3.16
2830 6774 2.035704 TGGCGATTCATGCAAACAGTTT 59.964 40.909 0.00 0.00 0.00 2.66
2831 6775 3.059166 GGCGATTCATGCAAACAGTTTT 58.941 40.909 0.00 0.00 0.00 2.43
2832 6776 3.120923 GGCGATTCATGCAAACAGTTTTG 60.121 43.478 0.00 0.00 44.42 2.44
2833 6777 3.490526 GCGATTCATGCAAACAGTTTTGT 59.509 39.130 0.00 0.00 43.62 2.83
2834 6778 4.375305 GCGATTCATGCAAACAGTTTTGTC 60.375 41.667 0.00 0.00 43.62 3.18
2835 6779 4.977963 CGATTCATGCAAACAGTTTTGTCT 59.022 37.500 0.00 0.00 43.62 3.41
2836 6780 5.459762 CGATTCATGCAAACAGTTTTGTCTT 59.540 36.000 0.00 0.00 43.62 3.01
2837 6781 6.019640 CGATTCATGCAAACAGTTTTGTCTTT 60.020 34.615 0.00 0.00 43.62 2.52
2838 6782 7.464444 CGATTCATGCAAACAGTTTTGTCTTTT 60.464 33.333 0.00 0.00 43.62 2.27
2839 6783 7.432350 TTCATGCAAACAGTTTTGTCTTTTT 57.568 28.000 0.00 0.00 43.62 1.94
2840 6784 6.829703 TCATGCAAACAGTTTTGTCTTTTTG 58.170 32.000 0.00 0.00 43.62 2.44
2841 6785 5.604010 TGCAAACAGTTTTGTCTTTTTGG 57.396 34.783 0.00 0.00 43.62 3.28
2842 6786 5.059833 TGCAAACAGTTTTGTCTTTTTGGT 58.940 33.333 0.00 0.00 43.62 3.67
2843 6787 5.529060 TGCAAACAGTTTTGTCTTTTTGGTT 59.471 32.000 0.00 0.00 43.62 3.67
2844 6788 6.038714 TGCAAACAGTTTTGTCTTTTTGGTTT 59.961 30.769 0.00 0.00 43.62 3.27
2845 6789 6.577055 GCAAACAGTTTTGTCTTTTTGGTTTC 59.423 34.615 0.00 0.00 43.62 2.78
2846 6790 7.519809 GCAAACAGTTTTGTCTTTTTGGTTTCT 60.520 33.333 0.00 0.00 43.62 2.52
2847 6791 8.341903 CAAACAGTTTTGTCTTTTTGGTTTCTT 58.658 29.630 0.00 0.00 37.85 2.52
2848 6792 7.652300 ACAGTTTTGTCTTTTTGGTTTCTTC 57.348 32.000 0.00 0.00 29.46 2.87
2849 6793 6.649141 ACAGTTTTGTCTTTTTGGTTTCTTCC 59.351 34.615 0.00 0.00 29.46 3.46
2850 6794 6.648725 CAGTTTTGTCTTTTTGGTTTCTTCCA 59.351 34.615 0.00 0.00 35.49 3.53
2851 6795 7.334171 CAGTTTTGTCTTTTTGGTTTCTTCCAT 59.666 33.333 0.00 0.00 37.33 3.41
2852 6796 8.536175 AGTTTTGTCTTTTTGGTTTCTTCCATA 58.464 29.630 0.00 0.00 37.33 2.74
2853 6797 9.325198 GTTTTGTCTTTTTGGTTTCTTCCATAT 57.675 29.630 0.00 0.00 37.33 1.78
2884 6828 9.532697 CAACATATTAACTTCAAAAATTGCAGC 57.467 29.630 0.00 0.00 0.00 5.25
2885 6829 8.830201 ACATATTAACTTCAAAAATTGCAGCA 57.170 26.923 0.00 0.00 0.00 4.41
2886 6830 8.928733 ACATATTAACTTCAAAAATTGCAGCAG 58.071 29.630 0.00 0.00 0.00 4.24
2887 6831 9.142515 CATATTAACTTCAAAAATTGCAGCAGA 57.857 29.630 0.00 0.00 0.00 4.26
2888 6832 9.709495 ATATTAACTTCAAAAATTGCAGCAGAA 57.291 25.926 0.00 0.00 0.00 3.02
2889 6833 5.723492 AACTTCAAAAATTGCAGCAGAAC 57.277 34.783 0.00 0.00 0.00 3.01
2890 6834 4.757594 ACTTCAAAAATTGCAGCAGAACA 58.242 34.783 0.00 0.00 0.00 3.18
2891 6835 5.177326 ACTTCAAAAATTGCAGCAGAACAA 58.823 33.333 0.00 0.00 0.00 2.83
2892 6836 5.642919 ACTTCAAAAATTGCAGCAGAACAAA 59.357 32.000 0.00 0.00 0.00 2.83
2893 6837 6.149142 ACTTCAAAAATTGCAGCAGAACAAAA 59.851 30.769 0.00 0.00 0.00 2.44
2894 6838 6.492007 TCAAAAATTGCAGCAGAACAAAAA 57.508 29.167 0.00 0.00 0.00 1.94
2949 6893 7.623268 GGATTTTTCCGTGCATCATAAATAC 57.377 36.000 0.00 0.00 0.00 1.89
2950 6894 7.425606 GGATTTTTCCGTGCATCATAAATACT 58.574 34.615 0.00 0.00 0.00 2.12
2951 6895 7.379529 GGATTTTTCCGTGCATCATAAATACTG 59.620 37.037 0.00 0.00 0.00 2.74
2952 6896 6.993786 TTTTCCGTGCATCATAAATACTGA 57.006 33.333 0.00 0.00 0.00 3.41
2953 6897 6.993786 TTTCCGTGCATCATAAATACTGAA 57.006 33.333 0.00 0.00 0.00 3.02
2954 6898 6.993786 TTCCGTGCATCATAAATACTGAAA 57.006 33.333 0.00 0.00 0.00 2.69
2955 6899 6.993786 TCCGTGCATCATAAATACTGAAAA 57.006 33.333 0.00 0.00 0.00 2.29
2956 6900 7.566760 TCCGTGCATCATAAATACTGAAAAT 57.433 32.000 0.00 0.00 0.00 1.82
2957 6901 7.416817 TCCGTGCATCATAAATACTGAAAATG 58.583 34.615 0.00 0.00 0.00 2.32
2958 6902 7.281999 TCCGTGCATCATAAATACTGAAAATGA 59.718 33.333 0.00 0.00 0.00 2.57
2959 6903 7.376866 CCGTGCATCATAAATACTGAAAATGAC 59.623 37.037 0.00 0.00 29.93 3.06
2960 6904 7.909641 CGTGCATCATAAATACTGAAAATGACA 59.090 33.333 0.00 0.00 29.93 3.58
2961 6905 9.740239 GTGCATCATAAATACTGAAAATGACAT 57.260 29.630 0.00 0.00 29.93 3.06
3000 6944 9.467258 AAATCTCATTTCGCATATTTATGTTGG 57.533 29.630 0.00 0.00 36.11 3.77
3001 6945 7.800155 TCTCATTTCGCATATTTATGTTGGA 57.200 32.000 0.00 0.00 36.11 3.53
3002 6946 7.639039 TCTCATTTCGCATATTTATGTTGGAC 58.361 34.615 0.00 0.00 36.11 4.02
3003 6947 6.734137 TCATTTCGCATATTTATGTTGGACC 58.266 36.000 0.00 0.00 36.11 4.46
3004 6948 6.319911 TCATTTCGCATATTTATGTTGGACCA 59.680 34.615 0.00 0.00 36.11 4.02
3005 6949 6.516739 TTTCGCATATTTATGTTGGACCAA 57.483 33.333 1.69 1.69 36.11 3.67
3006 6950 6.516739 TTCGCATATTTATGTTGGACCAAA 57.483 33.333 8.94 0.00 36.11 3.28
3007 6951 6.516739 TCGCATATTTATGTTGGACCAAAA 57.483 33.333 8.94 3.39 36.11 2.44
3008 6952 6.925211 TCGCATATTTATGTTGGACCAAAAA 58.075 32.000 8.94 6.76 36.11 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.450818 AGCAGGTCCAGATTTTAACCATA 57.549 39.130 0.00 0.00 34.09 2.74
3 4 3.806949 AGCAGGTCCAGATTTTAACCA 57.193 42.857 0.00 0.00 34.09 3.67
4 5 5.652452 ACATTAGCAGGTCCAGATTTTAACC 59.348 40.000 0.00 0.00 0.00 2.85
6 7 6.826741 GGTACATTAGCAGGTCCAGATTTTAA 59.173 38.462 0.00 0.00 0.00 1.52
7 8 6.354130 GGTACATTAGCAGGTCCAGATTTTA 58.646 40.000 0.00 0.00 0.00 1.52
8 9 5.193679 GGTACATTAGCAGGTCCAGATTTT 58.806 41.667 0.00 0.00 0.00 1.82
9 10 4.683400 CGGTACATTAGCAGGTCCAGATTT 60.683 45.833 0.00 0.00 0.00 2.17
10 11 3.181465 CGGTACATTAGCAGGTCCAGATT 60.181 47.826 0.00 0.00 0.00 2.40
11 12 2.365617 CGGTACATTAGCAGGTCCAGAT 59.634 50.000 0.00 0.00 0.00 2.90
12 13 1.754803 CGGTACATTAGCAGGTCCAGA 59.245 52.381 0.00 0.00 0.00 3.86
13 14 1.754803 TCGGTACATTAGCAGGTCCAG 59.245 52.381 0.00 0.00 0.00 3.86
14 15 1.855295 TCGGTACATTAGCAGGTCCA 58.145 50.000 0.00 0.00 0.00 4.02
15 16 2.934553 GTTTCGGTACATTAGCAGGTCC 59.065 50.000 0.00 0.00 0.00 4.46
16 17 3.858247 AGTTTCGGTACATTAGCAGGTC 58.142 45.455 0.00 0.00 0.00 3.85
17 18 3.975168 AGTTTCGGTACATTAGCAGGT 57.025 42.857 0.00 0.00 0.00 4.00
18 19 5.357257 ACATAGTTTCGGTACATTAGCAGG 58.643 41.667 0.00 0.00 0.00 4.85
19 20 7.116376 CCATACATAGTTTCGGTACATTAGCAG 59.884 40.741 0.00 0.00 0.00 4.24
20 21 6.926826 CCATACATAGTTTCGGTACATTAGCA 59.073 38.462 0.00 0.00 0.00 3.49
21 22 7.149973 TCCATACATAGTTTCGGTACATTAGC 58.850 38.462 0.00 0.00 0.00 3.09
22 23 7.813148 CCTCCATACATAGTTTCGGTACATTAG 59.187 40.741 0.00 0.00 0.00 1.73
23 24 7.506599 TCCTCCATACATAGTTTCGGTACATTA 59.493 37.037 0.00 0.00 0.00 1.90
24 25 6.325545 TCCTCCATACATAGTTTCGGTACATT 59.674 38.462 0.00 0.00 0.00 2.71
25 26 5.836898 TCCTCCATACATAGTTTCGGTACAT 59.163 40.000 0.00 0.00 0.00 2.29
26 27 5.202765 TCCTCCATACATAGTTTCGGTACA 58.797 41.667 0.00 0.00 0.00 2.90
27 28 5.779529 TCCTCCATACATAGTTTCGGTAC 57.220 43.478 0.00 0.00 0.00 3.34
28 29 6.312529 AGATCCTCCATACATAGTTTCGGTA 58.687 40.000 0.00 0.00 0.00 4.02
29 30 5.148502 AGATCCTCCATACATAGTTTCGGT 58.851 41.667 0.00 0.00 0.00 4.69
30 31 5.715070 GAGATCCTCCATACATAGTTTCGG 58.285 45.833 0.00 0.00 0.00 4.30
47 48 1.753368 CTCGGCTTGGAGGGAGATCC 61.753 65.000 0.00 0.00 40.03 3.36
48 49 1.745264 CTCGGCTTGGAGGGAGATC 59.255 63.158 0.00 0.00 0.00 2.75
49 50 2.439104 GCTCGGCTTGGAGGGAGAT 61.439 63.158 0.00 0.00 34.56 2.75
50 51 3.077556 GCTCGGCTTGGAGGGAGA 61.078 66.667 0.00 0.00 34.56 3.71
51 52 2.959484 TTGCTCGGCTTGGAGGGAG 61.959 63.158 2.96 0.00 34.56 4.30
52 53 2.927856 TTGCTCGGCTTGGAGGGA 60.928 61.111 2.96 0.00 34.56 4.20
53 54 2.747855 GTTGCTCGGCTTGGAGGG 60.748 66.667 2.96 0.00 34.56 4.30
54 55 3.121030 CGTTGCTCGGCTTGGAGG 61.121 66.667 2.96 0.00 34.56 4.30
55 56 1.227999 TTTCGTTGCTCGGCTTGGAG 61.228 55.000 2.56 0.00 40.32 3.86
56 57 0.605319 ATTTCGTTGCTCGGCTTGGA 60.605 50.000 2.56 0.00 40.32 3.53
57 58 0.240945 AATTTCGTTGCTCGGCTTGG 59.759 50.000 2.56 0.00 40.32 3.61
58 59 1.606606 GAATTTCGTTGCTCGGCTTG 58.393 50.000 2.56 0.00 40.32 4.01
59 60 0.521735 GGAATTTCGTTGCTCGGCTT 59.478 50.000 2.56 0.00 40.32 4.35
60 61 1.305930 GGGAATTTCGTTGCTCGGCT 61.306 55.000 2.56 0.00 40.32 5.52
61 62 1.136774 GGGAATTTCGTTGCTCGGC 59.863 57.895 2.56 0.00 40.32 5.54
62 63 1.165270 AAGGGAATTTCGTTGCTCGG 58.835 50.000 0.00 0.00 40.32 4.63
63 64 2.989422 AAAGGGAATTTCGTTGCTCG 57.011 45.000 0.00 0.00 41.41 5.03
64 65 4.482386 GGTTAAAGGGAATTTCGTTGCTC 58.518 43.478 0.00 0.00 32.01 4.26
65 66 3.257375 GGGTTAAAGGGAATTTCGTTGCT 59.743 43.478 0.00 0.00 32.01 3.91
66 67 3.581755 GGGTTAAAGGGAATTTCGTTGC 58.418 45.455 0.00 0.00 32.01 4.17
67 68 3.366577 CGGGGTTAAAGGGAATTTCGTTG 60.367 47.826 0.00 0.00 32.01 4.10
68 69 2.821378 CGGGGTTAAAGGGAATTTCGTT 59.179 45.455 0.00 0.00 32.01 3.85
69 70 2.439409 CGGGGTTAAAGGGAATTTCGT 58.561 47.619 0.00 0.00 32.01 3.85
70 71 1.133598 GCGGGGTTAAAGGGAATTTCG 59.866 52.381 0.00 0.00 32.01 3.46
71 72 2.172679 TGCGGGGTTAAAGGGAATTTC 58.827 47.619 0.00 0.00 32.01 2.17
72 73 2.312424 TGCGGGGTTAAAGGGAATTT 57.688 45.000 0.00 0.00 34.72 1.82
73 74 2.312424 TTGCGGGGTTAAAGGGAATT 57.688 45.000 0.00 0.00 0.00 2.17
74 75 2.312424 TTTGCGGGGTTAAAGGGAAT 57.688 45.000 0.00 0.00 0.00 3.01
75 76 2.083628 TTTTGCGGGGTTAAAGGGAA 57.916 45.000 0.00 0.00 0.00 3.97
76 77 2.312424 ATTTTGCGGGGTTAAAGGGA 57.688 45.000 0.00 0.00 0.00 4.20
77 78 4.538746 TTTATTTTGCGGGGTTAAAGGG 57.461 40.909 0.00 0.00 0.00 3.95
78 79 5.992829 AGTTTTTATTTTGCGGGGTTAAAGG 59.007 36.000 0.00 0.00 0.00 3.11
79 80 7.485418 AAGTTTTTATTTTGCGGGGTTAAAG 57.515 32.000 0.00 0.00 0.00 1.85
80 81 9.205719 GATAAGTTTTTATTTTGCGGGGTTAAA 57.794 29.630 0.00 0.00 29.67 1.52
81 82 8.586744 AGATAAGTTTTTATTTTGCGGGGTTAA 58.413 29.630 0.00 0.00 29.67 2.01
82 83 8.124808 AGATAAGTTTTTATTTTGCGGGGTTA 57.875 30.769 0.00 0.00 29.67 2.85
83 84 6.999950 AGATAAGTTTTTATTTTGCGGGGTT 58.000 32.000 0.00 0.00 29.67 4.11
84 85 6.599356 AGATAAGTTTTTATTTTGCGGGGT 57.401 33.333 0.00 0.00 29.67 4.95
85 86 9.030301 CATAAGATAAGTTTTTATTTTGCGGGG 57.970 33.333 0.00 0.00 29.43 5.73
86 87 9.581099 ACATAAGATAAGTTTTTATTTTGCGGG 57.419 29.630 0.00 0.00 29.43 6.13
110 111 7.760794 ACGAATCGGTTGTATATGTAAAGAACA 59.239 33.333 7.80 0.00 43.86 3.18
222 224 9.065871 CAATAATTCTTCCGTGCTTTAGAAAAG 57.934 33.333 0.00 0.00 31.11 2.27
223 225 7.540745 GCAATAATTCTTCCGTGCTTTAGAAAA 59.459 33.333 0.00 0.00 31.11 2.29
224 226 7.027161 GCAATAATTCTTCCGTGCTTTAGAAA 58.973 34.615 0.00 0.00 31.11 2.52
236 238 5.241506 TGAATCCATCGGCAATAATTCTTCC 59.758 40.000 0.00 0.00 0.00 3.46
249 251 8.839310 AATCTAAATTCTAGTGAATCCATCGG 57.161 34.615 0.00 0.00 41.62 4.18
288 290 9.686683 AAACTATAGCAAAAGAACCAGTATGAT 57.313 29.630 0.00 0.00 39.69 2.45
289 291 9.515226 AAAACTATAGCAAAAGAACCAGTATGA 57.485 29.630 0.00 0.00 39.69 2.15
293 295 8.919777 ACTAAAACTATAGCAAAAGAACCAGT 57.080 30.769 0.00 0.00 0.00 4.00
322 324 8.363390 TGTTGAGCAATGTCATATTACCAAAAA 58.637 29.630 0.00 0.00 0.00 1.94
323 325 7.890515 TGTTGAGCAATGTCATATTACCAAAA 58.109 30.769 0.00 0.00 0.00 2.44
324 326 7.459795 TGTTGAGCAATGTCATATTACCAAA 57.540 32.000 0.00 0.00 0.00 3.28
325 327 7.459795 TTGTTGAGCAATGTCATATTACCAA 57.540 32.000 0.00 0.00 31.07 3.67
326 328 7.338957 TGATTGTTGAGCAATGTCATATTACCA 59.661 33.333 0.00 0.00 46.90 3.25
327 329 7.706159 TGATTGTTGAGCAATGTCATATTACC 58.294 34.615 0.00 0.00 46.90 2.85
328 330 9.740239 AATGATTGTTGAGCAATGTCATATTAC 57.260 29.630 0.00 0.00 46.90 1.89
330 332 9.740239 GTAATGATTGTTGAGCAATGTCATATT 57.260 29.630 0.00 0.00 46.90 1.28
331 333 9.128404 AGTAATGATTGTTGAGCAATGTCATAT 57.872 29.630 0.00 0.00 46.90 1.78
332 334 8.510243 AGTAATGATTGTTGAGCAATGTCATA 57.490 30.769 0.00 0.00 46.90 2.15
333 335 7.400599 AGTAATGATTGTTGAGCAATGTCAT 57.599 32.000 0.00 0.00 46.90 3.06
334 336 6.822667 AGTAATGATTGTTGAGCAATGTCA 57.177 33.333 0.00 0.00 46.90 3.58
335 337 8.201554 TCTAGTAATGATTGTTGAGCAATGTC 57.798 34.615 0.00 0.00 46.90 3.06
336 338 8.618677 CATCTAGTAATGATTGTTGAGCAATGT 58.381 33.333 0.00 0.00 46.90 2.71
337 339 8.618677 ACATCTAGTAATGATTGTTGAGCAATG 58.381 33.333 0.00 0.00 46.90 2.82
339 341 7.066163 CCACATCTAGTAATGATTGTTGAGCAA 59.934 37.037 0.00 0.00 41.89 3.91
340 342 6.539826 CCACATCTAGTAATGATTGTTGAGCA 59.460 38.462 0.00 0.00 0.00 4.26
341 343 6.540189 ACCACATCTAGTAATGATTGTTGAGC 59.460 38.462 0.00 0.00 0.00 4.26
342 344 8.498054 AACCACATCTAGTAATGATTGTTGAG 57.502 34.615 0.00 0.00 0.00 3.02
462 744 3.542648 GGCTCTATGTTTTGGAGGGTAC 58.457 50.000 0.00 0.00 0.00 3.34
490 775 8.495949 CCGATCTTATTATTTGTCGCATAACTT 58.504 33.333 0.00 0.00 0.00 2.66
495 780 5.408604 GGACCGATCTTATTATTTGTCGCAT 59.591 40.000 0.00 0.00 0.00 4.73
496 781 4.748102 GGACCGATCTTATTATTTGTCGCA 59.252 41.667 0.00 0.00 0.00 5.10
507 792 9.681062 TCTTTTTATTTTGAGGACCGATCTTAT 57.319 29.630 0.00 0.00 0.00 1.73
508 793 9.681062 ATCTTTTTATTTTGAGGACCGATCTTA 57.319 29.630 0.00 0.00 0.00 2.10
509 794 7.996098 TCTTTTTATTTTGAGGACCGATCTT 57.004 32.000 0.00 0.00 0.00 2.40
510 795 7.011482 CGATCTTTTTATTTTGAGGACCGATCT 59.989 37.037 0.00 0.00 0.00 2.75
511 796 7.126398 CGATCTTTTTATTTTGAGGACCGATC 58.874 38.462 0.00 0.00 0.00 3.69
512 797 6.038271 CCGATCTTTTTATTTTGAGGACCGAT 59.962 38.462 0.00 0.00 0.00 4.18
513 798 5.353123 CCGATCTTTTTATTTTGAGGACCGA 59.647 40.000 0.00 0.00 0.00 4.69
514 799 5.569413 CCGATCTTTTTATTTTGAGGACCG 58.431 41.667 0.00 0.00 0.00 4.79
515 800 5.105917 TGCCGATCTTTTTATTTTGAGGACC 60.106 40.000 0.00 0.00 0.00 4.46
516 801 5.949735 TGCCGATCTTTTTATTTTGAGGAC 58.050 37.500 0.00 0.00 0.00 3.85
517 802 6.582677 TTGCCGATCTTTTTATTTTGAGGA 57.417 33.333 0.00 0.00 0.00 3.71
518 803 6.311200 CCTTTGCCGATCTTTTTATTTTGAGG 59.689 38.462 0.00 0.00 0.00 3.86
519 804 6.868339 ACCTTTGCCGATCTTTTTATTTTGAG 59.132 34.615 0.00 0.00 0.00 3.02
520 805 6.754193 ACCTTTGCCGATCTTTTTATTTTGA 58.246 32.000 0.00 0.00 0.00 2.69
521 806 7.275560 CCTACCTTTGCCGATCTTTTTATTTTG 59.724 37.037 0.00 0.00 0.00 2.44
522 807 7.320399 CCTACCTTTGCCGATCTTTTTATTTT 58.680 34.615 0.00 0.00 0.00 1.82
529 814 1.682087 GGCCTACCTTTGCCGATCTTT 60.682 52.381 0.00 0.00 38.00 2.52
578 863 8.715998 CATATACAAGAAGATGTAGAATGCACC 58.284 37.037 0.00 0.00 39.04 5.01
590 875 7.434492 CGTGTAAGGACCATATACAAGAAGAT 58.566 38.462 10.43 0.00 32.91 2.40
659 950 6.042208 AGGAGGAGAAAGCACCAACTATATAC 59.958 42.308 0.00 0.00 0.00 1.47
687 978 1.154413 GATGTTGCACGGAAGCACG 60.154 57.895 0.00 0.00 45.61 5.34
693 984 8.031864 ACATTTTATATTTTGATGTTGCACGGA 58.968 29.630 0.00 0.00 0.00 4.69
743 1038 1.554392 CGGAGAGATCGAGCTTTGTG 58.446 55.000 3.92 0.00 0.00 3.33
787 1082 2.159572 GGGACGTACGTAAAGCGACTAA 60.160 50.000 22.87 0.00 44.77 2.24
788 1083 1.396996 GGGACGTACGTAAAGCGACTA 59.603 52.381 22.87 0.00 44.77 2.59
821 1116 2.294890 ACAGCATCTGTCTGGGAGG 58.705 57.895 0.00 0.00 41.21 4.30
891 1215 0.106519 AGGCTGTATTGCATGGGGAC 60.107 55.000 0.00 0.00 34.04 4.46
910 1234 3.135225 CCGTGAGTTTGATGTGGTGTAA 58.865 45.455 0.00 0.00 0.00 2.41
917 1241 1.276421 AGCTAGCCGTGAGTTTGATGT 59.724 47.619 12.13 0.00 0.00 3.06
957 1286 6.970484 AGCTAGTTTAGGTGATTTGTGTTTG 58.030 36.000 0.00 0.00 34.78 2.93
958 1287 7.582667 AAGCTAGTTTAGGTGATTTGTGTTT 57.417 32.000 0.00 0.00 36.50 2.83
965 1294 6.869206 TGAGGTAAGCTAGTTTAGGTGATT 57.131 37.500 0.00 0.00 36.50 2.57
970 1299 6.342111 CCTTCTTGAGGTAAGCTAGTTTAGG 58.658 44.000 0.00 0.00 40.95 2.69
984 1313 2.019984 GCCATTGCTACCTTCTTGAGG 58.980 52.381 0.00 0.00 42.41 3.86
989 1318 0.179000 CCTCGCCATTGCTACCTTCT 59.821 55.000 0.00 0.00 34.43 2.85
1017 1352 2.679342 GGCAGCCACCACTCCCATA 61.679 63.158 6.55 0.00 0.00 2.74
1040 1375 0.969917 AAACAGCACAACCAGCACCA 60.970 50.000 0.00 0.00 0.00 4.17
1041 1376 1.028905 TAAACAGCACAACCAGCACC 58.971 50.000 0.00 0.00 0.00 5.01
1058 1393 1.669440 GCAGAGGACACGGTGGTAA 59.331 57.895 13.48 0.00 0.00 2.85
1060 1395 3.626924 GGCAGAGGACACGGTGGT 61.627 66.667 13.48 0.00 0.00 4.16
1092 1427 1.349357 GAGTTCTTTGGCAGAGGAGGT 59.651 52.381 5.08 0.00 31.12 3.85
1095 1430 0.693049 GGGAGTTCTTTGGCAGAGGA 59.307 55.000 5.08 0.00 31.12 3.71
1137 1472 1.920325 CACCTGAGCCCTCTTCCCA 60.920 63.158 0.00 0.00 0.00 4.37
1224 1559 1.308047 GGCACATGACAACACACTCA 58.692 50.000 0.00 0.00 0.00 3.41
1230 1565 1.902918 GCCTGGGCACATGACAACA 60.903 57.895 6.75 0.00 41.49 3.33
1233 1568 2.034532 CAGCCTGGGCACATGACA 59.965 61.111 14.39 0.00 44.88 3.58
1279 1614 0.923358 AGGGCATTTCGGGGATACAA 59.077 50.000 0.00 0.00 39.74 2.41
1289 1650 4.943705 TCTGTGTCATAAGAAGGGCATTTC 59.056 41.667 0.00 0.00 0.00 2.17
1290 1651 4.922206 TCTGTGTCATAAGAAGGGCATTT 58.078 39.130 0.00 0.00 0.00 2.32
1295 1656 6.426328 GCATCTTATCTGTGTCATAAGAAGGG 59.574 42.308 6.30 2.25 43.09 3.95
1302 1663 7.360113 TGGTTAGCATCTTATCTGTGTCATA 57.640 36.000 0.00 0.00 0.00 2.15
1303 1664 6.239217 TGGTTAGCATCTTATCTGTGTCAT 57.761 37.500 0.00 0.00 0.00 3.06
1305 1666 6.985188 TTTGGTTAGCATCTTATCTGTGTC 57.015 37.500 0.00 0.00 0.00 3.67
1307 1668 7.383102 AGTTTTGGTTAGCATCTTATCTGTG 57.617 36.000 0.00 0.00 0.00 3.66
1310 1671 8.870075 AGAAAGTTTTGGTTAGCATCTTATCT 57.130 30.769 0.00 0.00 0.00 1.98
1311 1672 9.346725 CAAGAAAGTTTTGGTTAGCATCTTATC 57.653 33.333 0.00 0.36 0.00 1.75
1314 1675 7.346751 TCAAGAAAGTTTTGGTTAGCATCTT 57.653 32.000 0.00 0.00 0.00 2.40
1455 1841 0.396435 AGCGTTGATGTGGAGGTCAA 59.604 50.000 0.00 0.00 32.31 3.18
1954 5886 1.751563 GGAGGAGATGTAGCTGGCC 59.248 63.158 0.00 0.00 0.00 5.36
1987 5919 2.031012 CTGGCGACCTTGCAGTCA 59.969 61.111 6.87 0.00 36.52 3.41
2047 5979 6.560253 TTGTCTTGAGAAATGGCTTAGTTC 57.440 37.500 0.00 0.00 33.71 3.01
2056 5988 9.159364 TCAGAGTGATATTTGTCTTGAGAAATG 57.841 33.333 13.67 0.00 0.00 2.32
2072 6004 4.667573 AGGCCGATTAGATCAGAGTGATA 58.332 43.478 0.00 0.00 37.20 2.15
2084 6016 5.360999 TCCATCATCAGTATAGGCCGATTAG 59.639 44.000 2.79 0.00 0.00 1.73
2125 6067 7.302350 TGGATGTTACACATTACATTTCTCG 57.698 36.000 0.00 0.00 39.27 4.04
2147 6089 5.865552 GGTCATTGATTTCTGTCACAAATGG 59.134 40.000 0.00 0.00 0.00 3.16
2148 6090 6.684686 AGGTCATTGATTTCTGTCACAAATG 58.315 36.000 0.00 0.00 0.00 2.32
2149 6091 6.906157 AGGTCATTGATTTCTGTCACAAAT 57.094 33.333 0.00 0.00 0.00 2.32
2156 6098 3.334881 AGGGGAAGGTCATTGATTTCTGT 59.665 43.478 11.34 0.00 0.00 3.41
2167 6109 2.631384 TCATTTCTCAGGGGAAGGTCA 58.369 47.619 0.00 0.00 0.00 4.02
2177 6119 6.468319 GCACGAAAGATGATTTCATTTCTCAG 59.532 38.462 0.00 0.00 36.57 3.35
2191 6133 4.977741 AAAATTTGCAGCACGAAAGATG 57.022 36.364 0.00 0.00 0.00 2.90
2199 6141 5.347012 AGCACAATTAAAATTTGCAGCAC 57.653 34.783 17.11 0.00 36.14 4.40
2211 6153 4.095782 GCACGGATAGGAAAGCACAATTAA 59.904 41.667 0.00 0.00 0.00 1.40
2216 6158 0.323302 TGCACGGATAGGAAAGCACA 59.677 50.000 0.00 0.00 0.00 4.57
2230 6172 1.653114 CACACCAAACAAAACTGCACG 59.347 47.619 0.00 0.00 0.00 5.34
2241 6183 2.031245 TGAACATCGCATCACACCAAAC 60.031 45.455 0.00 0.00 0.00 2.93
2245 6187 2.987413 TTTGAACATCGCATCACACC 57.013 45.000 0.00 0.00 0.00 4.16
2246 6188 5.601582 CAAATTTTGAACATCGCATCACAC 58.398 37.500 2.88 0.00 0.00 3.82
2247 6189 4.150274 GCAAATTTTGAACATCGCATCACA 59.850 37.500 13.26 0.00 0.00 3.58
2249 6191 4.558178 AGCAAATTTTGAACATCGCATCA 58.442 34.783 13.26 0.00 0.00 3.07
2250 6192 5.118971 TGAAGCAAATTTTGAACATCGCATC 59.881 36.000 13.26 0.00 0.00 3.91
2251 6193 4.989797 TGAAGCAAATTTTGAACATCGCAT 59.010 33.333 13.26 0.00 0.00 4.73
2252 6194 4.366586 TGAAGCAAATTTTGAACATCGCA 58.633 34.783 13.26 0.00 0.00 5.10
2253 6195 4.143263 CCTGAAGCAAATTTTGAACATCGC 60.143 41.667 13.26 0.00 0.00 4.58
2254 6196 4.984161 ACCTGAAGCAAATTTTGAACATCG 59.016 37.500 13.26 5.34 0.00 3.84
2255 6197 6.218746 AGACCTGAAGCAAATTTTGAACATC 58.781 36.000 13.26 5.42 0.00 3.06
2257 6199 5.596836 AGACCTGAAGCAAATTTTGAACA 57.403 34.783 13.26 7.90 0.00 3.18
2258 6200 6.276091 AGAAGACCTGAAGCAAATTTTGAAC 58.724 36.000 13.26 4.01 0.00 3.18
2259 6201 6.469782 AGAAGACCTGAAGCAAATTTTGAA 57.530 33.333 13.26 0.00 0.00 2.69
2261 6203 6.510536 AGAAGAAGACCTGAAGCAAATTTTG 58.489 36.000 4.72 4.72 0.00 2.44
2268 6210 4.503991 GGAAGAAGAAGAAGACCTGAAGCA 60.504 45.833 0.00 0.00 0.00 3.91
2273 6215 5.948742 ATAGGGAAGAAGAAGAAGACCTG 57.051 43.478 0.00 0.00 0.00 4.00
2325 6267 2.487428 CTCGGTGGAGCGACTCTG 59.513 66.667 0.00 0.00 32.61 3.35
2333 6275 1.927174 CACTTAAATCGCTCGGTGGAG 59.073 52.381 0.00 0.00 43.46 3.86
2339 6281 2.604914 AGCATGACACTTAAATCGCTCG 59.395 45.455 0.00 0.00 0.00 5.03
2347 6289 4.842574 TGCCTTATGAGCATGACACTTAA 58.157 39.130 0.00 0.00 34.69 1.85
2352 6294 3.628942 GTGATTGCCTTATGAGCATGACA 59.371 43.478 0.00 0.00 40.59 3.58
2389 6333 8.915036 ACCTGACCTATTAGTTACAGTCATAAG 58.085 37.037 0.00 0.00 34.06 1.73
2394 6338 7.878547 ACTACCTGACCTATTAGTTACAGTC 57.121 40.000 0.00 0.00 0.00 3.51
2408 6352 7.166691 TGTACTTCATCTTTACTACCTGACC 57.833 40.000 0.00 0.00 0.00 4.02
2424 6368 9.031537 TGGACTCACTAGAAATAATGTACTTCA 57.968 33.333 0.00 0.00 0.00 3.02
2426 6370 9.823647 CATGGACTCACTAGAAATAATGTACTT 57.176 33.333 0.00 0.00 0.00 2.24
2427 6371 9.201989 TCATGGACTCACTAGAAATAATGTACT 57.798 33.333 0.00 0.00 0.00 2.73
2428 6372 9.817809 TTCATGGACTCACTAGAAATAATGTAC 57.182 33.333 0.00 0.00 0.00 2.90
2430 6374 9.334947 CATTCATGGACTCACTAGAAATAATGT 57.665 33.333 0.00 0.00 0.00 2.71
2431 6375 9.334947 ACATTCATGGACTCACTAGAAATAATG 57.665 33.333 0.00 0.00 0.00 1.90
2434 6378 9.817809 GTTACATTCATGGACTCACTAGAAATA 57.182 33.333 0.00 0.00 0.00 1.40
2435 6379 8.321353 TGTTACATTCATGGACTCACTAGAAAT 58.679 33.333 0.00 0.00 0.00 2.17
2436 6380 7.676004 TGTTACATTCATGGACTCACTAGAAA 58.324 34.615 0.00 0.00 0.00 2.52
2437 6381 7.239763 TGTTACATTCATGGACTCACTAGAA 57.760 36.000 0.00 0.00 0.00 2.10
2438 6382 6.850752 TGTTACATTCATGGACTCACTAGA 57.149 37.500 0.00 0.00 0.00 2.43
2439 6383 7.905604 TTTGTTACATTCATGGACTCACTAG 57.094 36.000 0.00 0.00 0.00 2.57
2440 6384 8.729756 CAATTTGTTACATTCATGGACTCACTA 58.270 33.333 0.00 0.00 0.00 2.74
2441 6385 7.448161 TCAATTTGTTACATTCATGGACTCACT 59.552 33.333 0.00 0.00 0.00 3.41
2442 6386 7.592938 TCAATTTGTTACATTCATGGACTCAC 58.407 34.615 0.00 0.00 0.00 3.51
2443 6387 7.757941 TCAATTTGTTACATTCATGGACTCA 57.242 32.000 0.00 0.00 0.00 3.41
2444 6388 7.917505 GGATCAATTTGTTACATTCATGGACTC 59.082 37.037 0.00 0.00 0.00 3.36
2445 6389 7.396907 TGGATCAATTTGTTACATTCATGGACT 59.603 33.333 0.00 0.00 0.00 3.85
2446 6390 7.546358 TGGATCAATTTGTTACATTCATGGAC 58.454 34.615 0.00 0.00 0.00 4.02
2447 6391 7.715266 TGGATCAATTTGTTACATTCATGGA 57.285 32.000 0.00 0.00 0.00 3.41
2765 6709 0.181350 GGGGTGGCCTCAAGTCTATG 59.819 60.000 3.32 0.00 0.00 2.23
2766 6710 0.988678 GGGGGTGGCCTCAAGTCTAT 60.989 60.000 3.32 0.00 0.00 1.98
2767 6711 1.615424 GGGGGTGGCCTCAAGTCTA 60.615 63.158 3.32 0.00 0.00 2.59
2768 6712 2.936032 GGGGGTGGCCTCAAGTCT 60.936 66.667 3.32 0.00 0.00 3.24
2769 6713 1.205460 TAAGGGGGTGGCCTCAAGTC 61.205 60.000 3.32 0.00 0.00 3.01
2770 6714 0.552615 ATAAGGGGGTGGCCTCAAGT 60.553 55.000 3.32 0.00 0.00 3.16
2771 6715 0.183731 GATAAGGGGGTGGCCTCAAG 59.816 60.000 3.32 0.00 0.00 3.02
2772 6716 0.253630 AGATAAGGGGGTGGCCTCAA 60.254 55.000 3.32 0.00 0.00 3.02
2773 6717 0.645496 TAGATAAGGGGGTGGCCTCA 59.355 55.000 3.32 0.00 0.00 3.86
2774 6718 1.353091 CTAGATAAGGGGGTGGCCTC 58.647 60.000 3.32 0.00 0.00 4.70
2775 6719 0.768609 GCTAGATAAGGGGGTGGCCT 60.769 60.000 3.32 0.00 0.00 5.19
2776 6720 1.761822 GCTAGATAAGGGGGTGGCC 59.238 63.158 0.00 0.00 0.00 5.36
2777 6721 1.060163 TGGCTAGATAAGGGGGTGGC 61.060 60.000 0.00 0.00 0.00 5.01
2778 6722 0.765510 GTGGCTAGATAAGGGGGTGG 59.234 60.000 0.00 0.00 0.00 4.61
2779 6723 1.694696 GAGTGGCTAGATAAGGGGGTG 59.305 57.143 0.00 0.00 0.00 4.61
2780 6724 1.294068 TGAGTGGCTAGATAAGGGGGT 59.706 52.381 0.00 0.00 0.00 4.95
2781 6725 2.103153 TGAGTGGCTAGATAAGGGGG 57.897 55.000 0.00 0.00 0.00 5.40
2782 6726 4.713792 AAATGAGTGGCTAGATAAGGGG 57.286 45.455 0.00 0.00 0.00 4.79
2783 6727 5.221126 GCAAAAATGAGTGGCTAGATAAGGG 60.221 44.000 0.00 0.00 0.00 3.95
2784 6728 5.357878 TGCAAAAATGAGTGGCTAGATAAGG 59.642 40.000 0.00 0.00 0.00 2.69
2785 6729 6.441093 TGCAAAAATGAGTGGCTAGATAAG 57.559 37.500 0.00 0.00 0.00 1.73
2786 6730 6.183360 CCATGCAAAAATGAGTGGCTAGATAA 60.183 38.462 0.00 0.00 0.00 1.75
2787 6731 5.300034 CCATGCAAAAATGAGTGGCTAGATA 59.700 40.000 0.00 0.00 0.00 1.98
2788 6732 4.098960 CCATGCAAAAATGAGTGGCTAGAT 59.901 41.667 0.00 0.00 0.00 1.98
2789 6733 3.444742 CCATGCAAAAATGAGTGGCTAGA 59.555 43.478 0.00 0.00 0.00 2.43
2790 6734 3.777478 CCATGCAAAAATGAGTGGCTAG 58.223 45.455 0.00 0.00 0.00 3.42
2791 6735 2.094078 GCCATGCAAAAATGAGTGGCTA 60.094 45.455 14.88 0.00 46.44 3.93
2792 6736 1.338389 GCCATGCAAAAATGAGTGGCT 60.338 47.619 14.88 0.00 46.44 4.75
2793 6737 1.081094 GCCATGCAAAAATGAGTGGC 58.919 50.000 7.86 7.86 44.37 5.01
2794 6738 1.067706 TCGCCATGCAAAAATGAGTGG 60.068 47.619 0.00 0.00 0.00 4.00
2795 6739 2.350899 TCGCCATGCAAAAATGAGTG 57.649 45.000 0.00 0.00 0.00 3.51
2796 6740 3.056678 TGAATCGCCATGCAAAAATGAGT 60.057 39.130 0.00 0.00 0.00 3.41
2797 6741 3.513662 TGAATCGCCATGCAAAAATGAG 58.486 40.909 0.00 0.00 0.00 2.90
2798 6742 3.589495 TGAATCGCCATGCAAAAATGA 57.411 38.095 0.00 0.00 0.00 2.57
2799 6743 4.190304 CATGAATCGCCATGCAAAAATG 57.810 40.909 0.00 0.00 37.68 2.32
2807 6751 2.190161 CTGTTTGCATGAATCGCCATG 58.810 47.619 0.00 0.00 44.97 3.66
2808 6752 1.820519 ACTGTTTGCATGAATCGCCAT 59.179 42.857 0.00 0.00 0.00 4.40
2809 6753 1.246649 ACTGTTTGCATGAATCGCCA 58.753 45.000 0.00 0.00 0.00 5.69
2810 6754 2.352503 AACTGTTTGCATGAATCGCC 57.647 45.000 0.00 0.00 0.00 5.54
2811 6755 3.490526 ACAAAACTGTTTGCATGAATCGC 59.509 39.130 6.53 0.00 46.84 4.58
2812 6756 4.977963 AGACAAAACTGTTTGCATGAATCG 59.022 37.500 6.53 0.00 46.84 3.34
2813 6757 6.833342 AAGACAAAACTGTTTGCATGAATC 57.167 33.333 6.53 0.00 46.84 2.52
2814 6758 7.614124 AAAAGACAAAACTGTTTGCATGAAT 57.386 28.000 6.53 0.00 46.84 2.57
2815 6759 7.296660 CAAAAAGACAAAACTGTTTGCATGAA 58.703 30.769 6.53 0.00 46.84 2.57
2816 6760 6.128336 CCAAAAAGACAAAACTGTTTGCATGA 60.128 34.615 6.53 0.00 46.84 3.07
2817 6761 6.022821 CCAAAAAGACAAAACTGTTTGCATG 58.977 36.000 6.53 4.33 46.84 4.06
2818 6762 5.704978 ACCAAAAAGACAAAACTGTTTGCAT 59.295 32.000 6.53 0.00 46.84 3.96
2819 6763 5.059833 ACCAAAAAGACAAAACTGTTTGCA 58.940 33.333 6.53 0.00 46.84 4.08
2820 6764 5.605564 ACCAAAAAGACAAAACTGTTTGC 57.394 34.783 6.53 0.17 46.84 3.68
2822 6766 8.445275 AAGAAACCAAAAAGACAAAACTGTTT 57.555 26.923 0.00 0.00 0.00 2.83
2823 6767 7.172532 GGAAGAAACCAAAAAGACAAAACTGTT 59.827 33.333 0.00 0.00 0.00 3.16
2824 6768 6.649141 GGAAGAAACCAAAAAGACAAAACTGT 59.351 34.615 0.00 0.00 0.00 3.55
2825 6769 6.648725 TGGAAGAAACCAAAAAGACAAAACTG 59.351 34.615 0.00 0.00 36.96 3.16
2826 6770 6.764379 TGGAAGAAACCAAAAAGACAAAACT 58.236 32.000 0.00 0.00 36.96 2.66
2827 6771 7.609760 ATGGAAGAAACCAAAAAGACAAAAC 57.390 32.000 0.00 0.00 43.47 2.43
2858 6802 9.532697 GCTGCAATTTTTGAAGTTAATATGTTG 57.467 29.630 0.00 0.00 38.65 3.33
2859 6803 9.270640 TGCTGCAATTTTTGAAGTTAATATGTT 57.729 25.926 0.00 0.00 38.65 2.71
2860 6804 8.830201 TGCTGCAATTTTTGAAGTTAATATGT 57.170 26.923 0.00 0.00 38.65 2.29
2861 6805 9.142515 TCTGCTGCAATTTTTGAAGTTAATATG 57.857 29.630 3.02 0.00 38.65 1.78
2862 6806 9.709495 TTCTGCTGCAATTTTTGAAGTTAATAT 57.291 25.926 3.02 0.00 38.65 1.28
2863 6807 8.977505 GTTCTGCTGCAATTTTTGAAGTTAATA 58.022 29.630 3.02 0.00 38.65 0.98
2864 6808 7.495279 TGTTCTGCTGCAATTTTTGAAGTTAAT 59.505 29.630 3.02 0.00 38.65 1.40
2865 6809 6.815641 TGTTCTGCTGCAATTTTTGAAGTTAA 59.184 30.769 3.02 0.00 38.65 2.01
2866 6810 6.336566 TGTTCTGCTGCAATTTTTGAAGTTA 58.663 32.000 3.02 0.00 38.65 2.24
2867 6811 5.177326 TGTTCTGCTGCAATTTTTGAAGTT 58.823 33.333 3.02 0.00 38.65 2.66
2868 6812 4.757594 TGTTCTGCTGCAATTTTTGAAGT 58.242 34.783 3.02 0.00 38.65 3.01
2869 6813 5.721876 TTGTTCTGCTGCAATTTTTGAAG 57.278 34.783 3.02 0.00 39.47 3.02
2870 6814 6.492007 TTTTGTTCTGCTGCAATTTTTGAA 57.508 29.167 3.02 0.00 0.00 2.69
2871 6815 6.492007 TTTTTGTTCTGCTGCAATTTTTGA 57.508 29.167 3.02 0.00 0.00 2.69
2925 6869 7.379529 CAGTATTTATGATGCACGGAAAAATCC 59.620 37.037 0.00 0.00 0.00 3.01
2926 6870 8.128582 TCAGTATTTATGATGCACGGAAAAATC 58.871 33.333 0.00 0.00 0.00 2.17
2927 6871 7.995289 TCAGTATTTATGATGCACGGAAAAAT 58.005 30.769 0.00 0.00 0.00 1.82
2928 6872 7.384439 TCAGTATTTATGATGCACGGAAAAA 57.616 32.000 0.00 0.00 0.00 1.94
2929 6873 6.993786 TCAGTATTTATGATGCACGGAAAA 57.006 33.333 0.00 0.00 0.00 2.29
2930 6874 6.993786 TTCAGTATTTATGATGCACGGAAA 57.006 33.333 0.00 0.00 0.00 3.13
2931 6875 6.993786 TTTCAGTATTTATGATGCACGGAA 57.006 33.333 0.00 0.00 0.00 4.30
2932 6876 6.993786 TTTTCAGTATTTATGATGCACGGA 57.006 33.333 0.00 0.00 0.00 4.69
2933 6877 7.376866 GTCATTTTCAGTATTTATGATGCACGG 59.623 37.037 0.00 0.00 0.00 4.94
2934 6878 7.909641 TGTCATTTTCAGTATTTATGATGCACG 59.090 33.333 0.00 0.00 0.00 5.34
2935 6879 9.740239 ATGTCATTTTCAGTATTTATGATGCAC 57.260 29.630 0.00 0.00 0.00 4.57
2974 6918 9.467258 CCAACATAAATATGCGAAATGAGATTT 57.533 29.630 0.36 0.00 37.19 2.17
2975 6919 8.849168 TCCAACATAAATATGCGAAATGAGATT 58.151 29.630 0.36 0.00 37.19 2.40
2976 6920 8.292448 GTCCAACATAAATATGCGAAATGAGAT 58.708 33.333 0.36 0.00 37.19 2.75
2977 6921 7.255104 GGTCCAACATAAATATGCGAAATGAGA 60.255 37.037 0.36 0.00 37.19 3.27
2978 6922 6.857964 GGTCCAACATAAATATGCGAAATGAG 59.142 38.462 0.36 0.00 37.19 2.90
2979 6923 6.319911 TGGTCCAACATAAATATGCGAAATGA 59.680 34.615 0.00 0.00 37.19 2.57
2980 6924 6.502652 TGGTCCAACATAAATATGCGAAATG 58.497 36.000 0.00 0.00 37.19 2.32
2981 6925 6.707440 TGGTCCAACATAAATATGCGAAAT 57.293 33.333 0.00 0.00 37.19 2.17
2982 6926 6.516739 TTGGTCCAACATAAATATGCGAAA 57.483 33.333 0.00 0.00 37.19 3.46
2983 6927 6.516739 TTTGGTCCAACATAAATATGCGAA 57.483 33.333 2.98 0.00 37.19 4.70
2984 6928 6.516739 TTTTGGTCCAACATAAATATGCGA 57.483 33.333 2.98 0.00 37.19 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.