Multiple sequence alignment - TraesCS3A01G518500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G518500 chr3A 100.000 5726 0 0 1 5726 735887642 735893367 0.000000e+00 10575.0
1 TraesCS3A01G518500 chr3A 88.050 159 10 6 2877 3027 32466762 32466919 4.560000e-41 180.0
2 TraesCS3A01G518500 chr3B 94.664 2249 77 15 660 2880 812577718 812575485 0.000000e+00 3448.0
3 TraesCS3A01G518500 chr3B 94.346 2087 80 16 3028 5092 812575492 812573422 0.000000e+00 3166.0
4 TraesCS3A01G518500 chr3B 87.052 1089 112 12 1175 2258 357693501 357692437 0.000000e+00 1203.0
5 TraesCS3A01G518500 chr3B 85.086 523 22 13 61 531 812580754 812580236 3.100000e-132 483.0
6 TraesCS3A01G518500 chr3B 95.582 249 9 1 5478 5724 812573166 812572918 1.160000e-106 398.0
7 TraesCS3A01G518500 chr3B 91.837 49 2 1 5100 5146 78521057 78521009 3.700000e-07 67.6
8 TraesCS3A01G518500 chr3D 92.895 2083 96 19 3033 5082 604866181 604864118 0.000000e+00 2979.0
9 TraesCS3A01G518500 chr3D 94.860 1712 79 5 738 2447 604868411 604866707 0.000000e+00 2665.0
10 TraesCS3A01G518500 chr3D 95.198 354 15 2 5373 5726 604863244 604862893 5.010000e-155 558.0
11 TraesCS3A01G518500 chr3D 89.489 333 18 6 213 531 604870615 604870286 6.910000e-109 405.0
12 TraesCS3A01G518500 chr3D 98.276 174 1 2 685 857 604868585 604868413 2.590000e-78 303.0
13 TraesCS3A01G518500 chr3D 95.858 169 7 0 5142 5310 580331111 580330943 2.030000e-69 274.0
14 TraesCS3A01G518500 chr3D 89.922 129 9 1 61 185 604871022 604870894 4.590000e-36 163.0
15 TraesCS3A01G518500 chr3D 97.500 40 0 1 173 212 604870686 604870648 3.700000e-07 67.6
16 TraesCS3A01G518500 chr6A 87.144 1089 111 12 1175 2258 359069144 359070208 0.000000e+00 1208.0
17 TraesCS3A01G518500 chr6A 96.386 166 5 1 5143 5307 420829504 420829339 7.310000e-69 272.0
18 TraesCS3A01G518500 chr2D 85.250 1078 136 9 1186 2260 609552234 609553291 0.000000e+00 1088.0
19 TraesCS3A01G518500 chr2D 98.113 53 1 0 5316 5368 78688059 78688007 6.110000e-15 93.5
20 TraesCS3A01G518500 chr6B 83.396 1066 145 17 1213 2263 566796356 566795308 0.000000e+00 959.0
21 TraesCS3A01G518500 chr6B 91.824 159 3 2 2878 3028 217172077 217172233 4.490000e-51 213.0
22 TraesCS3A01G518500 chr6B 93.478 92 2 2 2944 3033 214885949 214886038 3.600000e-27 134.0
23 TraesCS3A01G518500 chr6B 91.379 58 2 2 2863 2919 214885830 214885885 6.150000e-10 76.8
24 TraesCS3A01G518500 chr7D 84.487 896 107 7 1190 2084 200448918 200449782 0.000000e+00 856.0
25 TraesCS3A01G518500 chr7D 88.179 626 66 5 1205 1830 541414294 541413677 0.000000e+00 739.0
26 TraesCS3A01G518500 chr7D 92.778 180 10 3 5139 5317 56399638 56399815 2.050000e-64 257.0
27 TraesCS3A01G518500 chr7D 90.566 53 1 3 5098 5146 29877467 29877519 3.700000e-07 67.6
28 TraesCS3A01G518500 chr2A 86.745 679 65 9 1175 1852 588986344 588986998 0.000000e+00 732.0
29 TraesCS3A01G518500 chr2A 91.463 164 3 3 2879 3034 498099276 498099116 1.250000e-51 215.0
30 TraesCS3A01G518500 chr4A 86.432 597 72 5 1205 1798 595391103 595391693 0.000000e+00 645.0
31 TraesCS3A01G518500 chr4A 87.671 438 47 4 1827 2258 104120780 104120344 2.380000e-138 503.0
32 TraesCS3A01G518500 chr4A 92.655 177 11 2 5141 5315 274744893 274745069 2.650000e-63 254.0
33 TraesCS3A01G518500 chr4A 88.889 126 5 2 2907 3024 624117058 624117182 4.620000e-31 147.0
34 TraesCS3A01G518500 chr4A 94.915 59 3 0 5317 5375 450788433 450788375 6.110000e-15 93.5
35 TraesCS3A01G518500 chr2B 86.432 597 71 6 1205 1798 13326530 13325941 0.000000e+00 645.0
36 TraesCS3A01G518500 chr5A 87.194 531 65 3 1205 1735 420349368 420348841 8.210000e-168 601.0
37 TraesCS3A01G518500 chr5A 85.714 525 72 1 1211 1735 134735238 134734717 8.390000e-153 551.0
38 TraesCS3A01G518500 chr5A 86.957 184 18 3 2019 2196 473046989 473046806 9.730000e-48 202.0
39 TraesCS3A01G518500 chr5A 91.667 72 3 3 2881 2951 344545970 344545901 4.720000e-16 97.1
40 TraesCS3A01G518500 chr1A 87.900 438 46 4 1827 2258 514685818 514686254 5.120000e-140 508.0
41 TraesCS3A01G518500 chr1A 90.000 40 4 0 5106 5145 30291369 30291408 1.000000e-02 52.8
42 TraesCS3A01G518500 chr7B 84.928 418 57 4 1205 1621 699522407 699521995 8.870000e-113 418.0
43 TraesCS3A01G518500 chr7B 94.382 89 2 2 2944 3031 362049792 362049706 3.600000e-27 134.0
44 TraesCS3A01G518500 chr6D 94.186 172 9 1 5137 5307 40409568 40409397 1.580000e-65 261.0
45 TraesCS3A01G518500 chr7A 86.486 222 24 6 5138 5356 41424518 41424736 7.410000e-59 239.0
46 TraesCS3A01G518500 chr7A 85.398 226 26 5 5141 5365 12118589 12118808 1.610000e-55 228.0
47 TraesCS3A01G518500 chr7A 83.478 230 35 3 5140 5368 41424865 41424638 1.620000e-50 211.0
48 TraesCS3A01G518500 chr7A 88.034 117 4 3 2875 2981 539312386 539312502 4.660000e-26 130.0
49 TraesCS3A01G518500 chr5B 85.106 235 30 2 5142 5375 677663887 677663657 9.590000e-58 235.0
50 TraesCS3A01G518500 chr1B 84.783 230 32 3 5140 5368 496560149 496559922 1.610000e-55 228.0
51 TraesCS3A01G518500 chr1B 84.444 225 32 3 5142 5365 496559807 496560029 9.660000e-53 219.0
52 TraesCS3A01G518500 chr1B 82.184 174 5 6 2881 3028 245935489 245935316 6.020000e-25 126.0
53 TraesCS3A01G518500 chr1B 90.625 96 1 1 2881 2968 363151670 363151765 2.800000e-23 121.0
54 TraesCS3A01G518500 chr1B 89.888 89 1 1 2881 2961 679654861 679654949 2.180000e-19 108.0
55 TraesCS3A01G518500 chr1D 83.761 234 33 5 5144 5375 415400082 415400312 3.470000e-52 217.0
56 TraesCS3A01G518500 chr1D 96.875 64 2 0 690 753 168357156 168357093 2.180000e-19 108.0
57 TraesCS3A01G518500 chr4B 91.613 155 3 2 2881 3027 31525675 31525827 7.520000e-49 206.0
58 TraesCS3A01G518500 chrUn 88.050 159 9 7 2881 3033 64148752 64148598 4.560000e-41 180.0
59 TraesCS3A01G518500 chr4D 88.050 159 9 5 2881 3033 31546202 31546048 4.560000e-41 180.0
60 TraesCS3A01G518500 chr5D 100.000 29 0 0 5107 5135 459929518 459929490 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G518500 chr3A 735887642 735893367 5725 False 10575.000000 10575 100.0000 1 5726 1 chr3A.!!$F2 5725
1 TraesCS3A01G518500 chr3B 812572918 812580754 7836 True 1873.750000 3448 92.4195 61 5724 4 chr3B.!!$R3 5663
2 TraesCS3A01G518500 chr3B 357692437 357693501 1064 True 1203.000000 1203 87.0520 1175 2258 1 chr3B.!!$R2 1083
3 TraesCS3A01G518500 chr3D 604862893 604871022 8129 True 1020.085714 2979 94.0200 61 5726 7 chr3D.!!$R2 5665
4 TraesCS3A01G518500 chr6A 359069144 359070208 1064 False 1208.000000 1208 87.1440 1175 2258 1 chr6A.!!$F1 1083
5 TraesCS3A01G518500 chr2D 609552234 609553291 1057 False 1088.000000 1088 85.2500 1186 2260 1 chr2D.!!$F1 1074
6 TraesCS3A01G518500 chr6B 566795308 566796356 1048 True 959.000000 959 83.3960 1213 2263 1 chr6B.!!$R1 1050
7 TraesCS3A01G518500 chr7D 200448918 200449782 864 False 856.000000 856 84.4870 1190 2084 1 chr7D.!!$F3 894
8 TraesCS3A01G518500 chr7D 541413677 541414294 617 True 739.000000 739 88.1790 1205 1830 1 chr7D.!!$R1 625
9 TraesCS3A01G518500 chr2A 588986344 588986998 654 False 732.000000 732 86.7450 1175 1852 1 chr2A.!!$F1 677
10 TraesCS3A01G518500 chr4A 595391103 595391693 590 False 645.000000 645 86.4320 1205 1798 1 chr4A.!!$F2 593
11 TraesCS3A01G518500 chr2B 13325941 13326530 589 True 645.000000 645 86.4320 1205 1798 1 chr2B.!!$R1 593
12 TraesCS3A01G518500 chr5A 420348841 420349368 527 True 601.000000 601 87.1940 1205 1735 1 chr5A.!!$R3 530
13 TraesCS3A01G518500 chr5A 134734717 134735238 521 True 551.000000 551 85.7140 1211 1735 1 chr5A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.536460 GGATCGGTGTGGTTGTTGGT 60.536 55.0 0.0 0.0 0.00 3.67 F
1089 4750 0.537371 CCAAGTCCAAACCCTCGCTT 60.537 55.0 0.0 0.0 0.00 4.68 F
1792 5461 0.185175 GGTGTTGGAAGGGTGGTTCT 59.815 55.0 0.0 0.0 0.00 3.01 F
1835 5504 0.464554 GGTAAGGCTGAGTGGGATGC 60.465 60.0 0.0 0.0 0.00 3.91 F
2528 6337 1.109323 GCCTCCCTGTTTTGTGCAGT 61.109 55.0 0.0 0.0 32.41 4.40 F
3019 6838 0.391528 GGTCGCCTTACCGCCTTAAA 60.392 55.0 0.0 0.0 0.00 1.52 F
4234 8065 0.108585 AGCAAAGACATCGGGTGTGT 59.891 50.0 0.0 0.0 42.36 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 5306 1.736586 CTCTTCCGGCGATACAGCT 59.263 57.895 9.30 0.0 37.29 4.24 R
2993 6812 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.0 39.33 5.52 R
2995 6814 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.0 37.34 2.69 R
3009 6828 2.448926 GCCATTGTTTTTAAGGCGGT 57.551 45.000 0.00 0.0 35.42 5.68 R
3876 7707 0.037326 CCACAGCTAGAAAGTGCCGA 60.037 55.000 0.00 0.0 32.09 5.54 R
4486 8326 0.820226 CCTGTCTCAGATTCCTGCGA 59.180 55.000 0.00 0.0 40.20 5.10 R
5370 9328 0.739462 CCTTGTTGCTGATCGCCGTA 60.739 55.000 7.00 0.0 38.05 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.059260 TGGTAGATAAAAAGAGTGTGTAAAACC 57.941 33.333 0.00 0.00 0.00 3.27
30 31 8.509690 GGTAGATAAAAAGAGTGTGTAAAACCC 58.490 37.037 0.00 0.00 0.00 4.11
31 32 9.281371 GTAGATAAAAAGAGTGTGTAAAACCCT 57.719 33.333 0.00 0.00 0.00 4.34
32 33 8.166422 AGATAAAAAGAGTGTGTAAAACCCTG 57.834 34.615 0.00 0.00 0.00 4.45
33 34 7.778382 AGATAAAAAGAGTGTGTAAAACCCTGT 59.222 33.333 0.00 0.00 0.00 4.00
34 35 8.983702 ATAAAAAGAGTGTGTAAAACCCTGTA 57.016 30.769 0.00 0.00 0.00 2.74
35 36 7.706100 AAAAAGAGTGTGTAAAACCCTGTAA 57.294 32.000 0.00 0.00 0.00 2.41
36 37 6.688637 AAAGAGTGTGTAAAACCCTGTAAC 57.311 37.500 0.00 0.00 0.00 2.50
37 38 5.625568 AGAGTGTGTAAAACCCTGTAACT 57.374 39.130 0.00 0.00 0.00 2.24
38 39 5.365619 AGAGTGTGTAAAACCCTGTAACTG 58.634 41.667 0.00 0.00 0.00 3.16
39 40 5.104652 AGAGTGTGTAAAACCCTGTAACTGT 60.105 40.000 0.00 0.00 0.00 3.55
40 41 5.503002 AGTGTGTAAAACCCTGTAACTGTT 58.497 37.500 0.00 0.00 0.00 3.16
41 42 5.947566 AGTGTGTAAAACCCTGTAACTGTTT 59.052 36.000 0.00 0.00 33.86 2.83
42 43 6.031471 GTGTGTAAAACCCTGTAACTGTTTG 58.969 40.000 0.00 0.00 32.85 2.93
43 44 5.711036 TGTGTAAAACCCTGTAACTGTTTGT 59.289 36.000 0.00 0.00 32.85 2.83
44 45 6.883217 TGTGTAAAACCCTGTAACTGTTTGTA 59.117 34.615 0.00 0.00 32.85 2.41
45 46 7.148272 TGTGTAAAACCCTGTAACTGTTTGTAC 60.148 37.037 0.00 0.00 32.85 2.90
46 47 5.488645 AAAACCCTGTAACTGTTTGTACG 57.511 39.130 0.00 0.00 32.85 3.67
47 48 3.825143 ACCCTGTAACTGTTTGTACGT 57.175 42.857 0.00 0.00 0.00 3.57
48 49 3.721035 ACCCTGTAACTGTTTGTACGTC 58.279 45.455 0.00 0.00 0.00 4.34
49 50 3.385755 ACCCTGTAACTGTTTGTACGTCT 59.614 43.478 0.00 0.00 0.00 4.18
50 51 4.584325 ACCCTGTAACTGTTTGTACGTCTA 59.416 41.667 0.00 0.00 0.00 2.59
51 52 5.159209 CCCTGTAACTGTTTGTACGTCTAG 58.841 45.833 0.00 0.00 0.00 2.43
52 53 4.620184 CCTGTAACTGTTTGTACGTCTAGC 59.380 45.833 0.00 0.00 0.00 3.42
53 54 5.185668 TGTAACTGTTTGTACGTCTAGCA 57.814 39.130 0.00 0.00 0.00 3.49
54 55 5.775686 TGTAACTGTTTGTACGTCTAGCAT 58.224 37.500 0.00 0.00 0.00 3.79
55 56 6.218019 TGTAACTGTTTGTACGTCTAGCATT 58.782 36.000 0.00 0.00 0.00 3.56
56 57 6.702723 TGTAACTGTTTGTACGTCTAGCATTT 59.297 34.615 0.00 0.00 0.00 2.32
57 58 6.613755 AACTGTTTGTACGTCTAGCATTTT 57.386 33.333 0.00 0.00 0.00 1.82
58 59 6.613755 ACTGTTTGTACGTCTAGCATTTTT 57.386 33.333 0.00 0.00 0.00 1.94
59 60 6.427150 ACTGTTTGTACGTCTAGCATTTTTG 58.573 36.000 0.00 0.00 0.00 2.44
60 61 5.753744 TGTTTGTACGTCTAGCATTTTTGG 58.246 37.500 0.00 0.00 0.00 3.28
61 62 5.151389 GTTTGTACGTCTAGCATTTTTGGG 58.849 41.667 0.00 0.00 0.00 4.12
62 63 4.010667 TGTACGTCTAGCATTTTTGGGT 57.989 40.909 0.00 0.00 0.00 4.51
63 64 4.391155 TGTACGTCTAGCATTTTTGGGTT 58.609 39.130 0.00 0.00 0.00 4.11
115 116 2.421775 TGTTAAATCGCGATTGTGGCAT 59.578 40.909 33.09 19.27 0.00 4.40
117 118 4.095036 TGTTAAATCGCGATTGTGGCATAA 59.905 37.500 33.09 22.49 0.00 1.90
138 139 0.536460 GGATCGGTGTGGTTGTTGGT 60.536 55.000 0.00 0.00 0.00 3.67
212 436 3.365520 CAGCAACGCACAACTACGTATTA 59.634 43.478 0.00 0.00 42.68 0.98
213 437 3.989167 AGCAACGCACAACTACGTATTAA 59.011 39.130 0.00 0.00 42.68 1.40
214 438 4.076985 GCAACGCACAACTACGTATTAAC 58.923 43.478 0.00 0.00 42.68 2.01
215 439 4.376210 GCAACGCACAACTACGTATTAACA 60.376 41.667 0.00 0.00 42.68 2.41
216 440 4.891277 ACGCACAACTACGTATTAACAC 57.109 40.909 0.00 0.00 41.48 3.32
217 441 4.297510 ACGCACAACTACGTATTAACACA 58.702 39.130 0.00 0.00 41.48 3.72
218 442 4.383649 ACGCACAACTACGTATTAACACAG 59.616 41.667 0.00 0.00 41.48 3.66
220 444 5.605327 GCACAACTACGTATTAACACAGTG 58.395 41.667 0.00 0.00 0.00 3.66
221 445 5.403166 GCACAACTACGTATTAACACAGTGA 59.597 40.000 7.81 0.00 0.00 3.41
278 535 6.382608 GGCTCTTCTTCTTATTGTTGTTTCC 58.617 40.000 0.00 0.00 0.00 3.13
341 598 5.046591 TGTGTCTACAGGGAAATAGTGGAAG 60.047 44.000 0.00 0.00 31.91 3.46
342 599 5.187186 GTGTCTACAGGGAAATAGTGGAAGA 59.813 44.000 0.00 0.00 0.00 2.87
343 600 5.422331 TGTCTACAGGGAAATAGTGGAAGAG 59.578 44.000 0.00 0.00 0.00 2.85
344 601 5.657302 GTCTACAGGGAAATAGTGGAAGAGA 59.343 44.000 0.00 0.00 0.00 3.10
345 602 6.154706 GTCTACAGGGAAATAGTGGAAGAGAA 59.845 42.308 0.00 0.00 0.00 2.87
346 603 6.903534 TCTACAGGGAAATAGTGGAAGAGAAT 59.096 38.462 0.00 0.00 0.00 2.40
347 604 8.065627 TCTACAGGGAAATAGTGGAAGAGAATA 58.934 37.037 0.00 0.00 0.00 1.75
555 4044 2.863809 CCCATGGCATTCCCTAACTAC 58.136 52.381 6.09 0.00 0.00 2.73
562 4051 2.098770 GCATTCCCTAACTACGTCGACT 59.901 50.000 14.70 3.37 0.00 4.18
564 4053 4.349501 CATTCCCTAACTACGTCGACTTC 58.650 47.826 14.70 0.00 0.00 3.01
567 4056 4.074970 TCCCTAACTACGTCGACTTCTTT 58.925 43.478 14.70 3.82 0.00 2.52
576 4065 2.466846 GTCGACTTCTTTGTCACCGAA 58.533 47.619 8.70 0.00 36.82 4.30
577 4066 3.057734 GTCGACTTCTTTGTCACCGAAT 58.942 45.455 8.70 0.00 36.82 3.34
612 4109 4.129737 CGCCGACGTCTCCATGGT 62.130 66.667 14.70 0.00 33.53 3.55
613 4110 2.264794 GCCGACGTCTCCATGGTT 59.735 61.111 14.70 0.00 0.00 3.67
614 4111 1.514087 GCCGACGTCTCCATGGTTA 59.486 57.895 14.70 0.00 0.00 2.85
618 4115 2.460918 CGACGTCTCCATGGTTACATC 58.539 52.381 14.70 8.30 34.35 3.06
619 4116 2.798499 CGACGTCTCCATGGTTACATCC 60.798 54.545 14.70 2.80 34.35 3.51
620 4117 2.167693 GACGTCTCCATGGTTACATCCA 59.832 50.000 12.58 0.00 42.01 3.41
621 4118 2.093658 ACGTCTCCATGGTTACATCCAC 60.094 50.000 12.58 0.00 40.51 4.02
622 4119 2.168521 CGTCTCCATGGTTACATCCACT 59.831 50.000 12.58 0.00 40.51 4.00
623 4120 3.383505 CGTCTCCATGGTTACATCCACTA 59.616 47.826 12.58 0.00 40.51 2.74
624 4121 4.694339 GTCTCCATGGTTACATCCACTAC 58.306 47.826 12.58 0.00 40.51 2.73
625 4122 3.709653 TCTCCATGGTTACATCCACTACC 59.290 47.826 12.58 0.00 40.51 3.18
626 4123 2.432874 TCCATGGTTACATCCACTACCG 59.567 50.000 12.58 0.00 40.51 4.02
629 4126 1.551430 TGGTTACATCCACTACCGGTG 59.449 52.381 19.93 10.05 44.96 4.94
648 4145 2.788786 GTGAAACACGGCAACATTTGAG 59.211 45.455 0.00 0.00 36.32 3.02
650 4147 3.628032 TGAAACACGGCAACATTTGAGTA 59.372 39.130 0.00 0.00 0.00 2.59
651 4148 3.619233 AACACGGCAACATTTGAGTAC 57.381 42.857 0.00 0.00 0.00 2.73
652 4149 2.846193 ACACGGCAACATTTGAGTACT 58.154 42.857 0.00 0.00 0.00 2.73
653 4150 2.548057 ACACGGCAACATTTGAGTACTG 59.452 45.455 0.00 0.00 0.00 2.74
654 4151 2.095768 CACGGCAACATTTGAGTACTGG 60.096 50.000 0.00 0.00 0.00 4.00
658 4167 3.689649 GGCAACATTTGAGTACTGGGTAG 59.310 47.826 0.00 0.00 0.00 3.18
680 4189 8.398665 GGTAGGTTTATGCATGAGAAAAACTAG 58.601 37.037 14.81 0.00 33.13 2.57
682 4191 8.635765 AGGTTTATGCATGAGAAAAACTAGAA 57.364 30.769 17.27 0.00 32.11 2.10
733 4269 1.564348 AGCCCCGTTCTGTTAATCCAT 59.436 47.619 0.00 0.00 0.00 3.41
735 4271 3.201266 AGCCCCGTTCTGTTAATCCATTA 59.799 43.478 0.00 0.00 0.00 1.90
736 4272 3.314357 GCCCCGTTCTGTTAATCCATTAC 59.686 47.826 0.00 0.00 0.00 1.89
933 4591 1.817099 CCCGCTCACTTCATCCTGC 60.817 63.158 0.00 0.00 0.00 4.85
944 4602 1.153289 CATCCTGCGGCTAGTGCTT 60.153 57.895 0.00 0.00 39.59 3.91
945 4603 0.745845 CATCCTGCGGCTAGTGCTTT 60.746 55.000 0.00 0.00 39.59 3.51
997 4655 2.038975 AACTCCCCTCGGCTAGCA 59.961 61.111 18.24 0.00 0.00 3.49
1089 4750 0.537371 CCAAGTCCAAACCCTCGCTT 60.537 55.000 0.00 0.00 0.00 4.68
1623 5291 3.807538 GCGTACGAGGTCGAGGCA 61.808 66.667 21.65 0.00 43.02 4.75
1792 5461 0.185175 GGTGTTGGAAGGGTGGTTCT 59.815 55.000 0.00 0.00 0.00 3.01
1835 5504 0.464554 GGTAAGGCTGAGTGGGATGC 60.465 60.000 0.00 0.00 0.00 3.91
1887 5557 2.998097 GGTGGGTGCCATCAGCTA 59.002 61.111 0.00 0.00 44.23 3.32
1900 5570 1.222936 CAGCTAGGGTGGCTTCAGG 59.777 63.158 0.00 0.00 38.03 3.86
1932 5609 1.375268 GGTGCAGCAGGTGAGAGTC 60.375 63.158 11.86 0.00 0.00 3.36
2092 5789 3.395607 TCAGGTGCATATATCTGCCCTTT 59.604 43.478 15.76 0.87 39.38 3.11
2181 5878 1.561076 TGGCAGTTGTGATAGGCAGAT 59.439 47.619 0.00 0.00 32.48 2.90
2408 6126 1.542915 GTTGAATGCCATGTCTGCACT 59.457 47.619 0.00 0.00 42.38 4.40
2528 6337 1.109323 GCCTCCCTGTTTTGTGCAGT 61.109 55.000 0.00 0.00 32.41 4.40
2720 6539 4.254492 CTCAAGTAACTGGTCCTAAAGCC 58.746 47.826 0.00 0.00 0.00 4.35
2726 6545 3.091633 ACTGGTCCTAAAGCCGTAGTA 57.908 47.619 0.00 0.00 0.00 1.82
2770 6589 7.930513 TCATATAACTAAAGCATGACAGTCG 57.069 36.000 0.00 0.00 0.00 4.18
2804 6623 5.959618 ACTAAAGCCAGCTAACGAAAAAT 57.040 34.783 0.00 0.00 0.00 1.82
2879 6698 7.822822 AGTTTTATTTCCGTTAGTAGCTGACAT 59.177 33.333 0.00 0.00 0.00 3.06
2880 6699 7.766219 TTTATTTCCGTTAGTAGCTGACATC 57.234 36.000 0.00 0.00 0.00 3.06
2881 6700 4.794278 TTTCCGTTAGTAGCTGACATCA 57.206 40.909 0.00 0.00 0.00 3.07
2882 6701 5.339008 TTTCCGTTAGTAGCTGACATCAT 57.661 39.130 0.00 0.00 0.00 2.45
2883 6702 5.339008 TTCCGTTAGTAGCTGACATCATT 57.661 39.130 0.00 0.00 0.00 2.57
2884 6703 4.682787 TCCGTTAGTAGCTGACATCATTG 58.317 43.478 0.00 0.00 0.00 2.82
2885 6704 4.159693 TCCGTTAGTAGCTGACATCATTGT 59.840 41.667 0.00 0.00 39.32 2.71
2886 6705 4.870426 CCGTTAGTAGCTGACATCATTGTT 59.130 41.667 0.00 0.00 35.79 2.83
2887 6706 5.351465 CCGTTAGTAGCTGACATCATTGTTT 59.649 40.000 0.00 0.00 35.79 2.83
2888 6707 6.128282 CCGTTAGTAGCTGACATCATTGTTTT 60.128 38.462 0.00 0.00 35.79 2.43
2889 6708 7.298122 CGTTAGTAGCTGACATCATTGTTTTT 58.702 34.615 0.00 0.00 35.79 1.94
2890 6709 8.440059 CGTTAGTAGCTGACATCATTGTTTTTA 58.560 33.333 0.00 0.00 35.79 1.52
2893 6712 7.820648 AGTAGCTGACATCATTGTTTTTAAGG 58.179 34.615 0.00 0.00 35.79 2.69
2894 6713 5.473039 AGCTGACATCATTGTTTTTAAGGC 58.527 37.500 0.00 0.00 35.79 4.35
2895 6714 4.324402 GCTGACATCATTGTTTTTAAGGCG 59.676 41.667 0.00 0.00 35.79 5.52
2896 6715 5.446143 TGACATCATTGTTTTTAAGGCGT 57.554 34.783 0.00 0.00 35.79 5.68
2897 6716 5.457140 TGACATCATTGTTTTTAAGGCGTC 58.543 37.500 0.00 0.00 35.79 5.19
2898 6717 4.805219 ACATCATTGTTTTTAAGGCGTCC 58.195 39.130 0.00 0.00 29.55 4.79
2899 6718 3.926821 TCATTGTTTTTAAGGCGTCCC 57.073 42.857 0.00 0.00 0.00 4.46
2900 6719 2.226912 TCATTGTTTTTAAGGCGTCCCG 59.773 45.455 0.00 0.00 35.76 5.14
2912 6731 4.699522 GTCCCGCCTTGGACGCTT 62.700 66.667 0.00 0.00 44.98 4.68
2913 6732 2.998480 TCCCGCCTTGGACGCTTA 60.998 61.111 0.00 0.00 42.00 3.09
2914 6733 2.511600 CCCGCCTTGGACGCTTAG 60.512 66.667 0.00 0.00 42.00 2.18
2915 6734 2.511600 CCGCCTTGGACGCTTAGG 60.512 66.667 0.00 0.00 42.00 2.69
2950 6769 4.338710 AACGCCTTGCCCGCCTTA 62.339 61.111 0.00 0.00 0.00 2.69
2951 6770 4.778143 ACGCCTTGCCCGCCTTAG 62.778 66.667 0.00 0.00 0.00 2.18
3003 6822 4.176752 CCCCCAGCGCCTTAGGTC 62.177 72.222 2.29 0.00 0.00 3.85
3004 6823 4.530857 CCCCAGCGCCTTAGGTCG 62.531 72.222 2.29 9.97 0.00 4.79
3007 6826 4.148825 CAGCGCCTTAGGTCGCCT 62.149 66.667 26.94 16.35 44.56 5.52
3008 6827 3.391382 AGCGCCTTAGGTCGCCTT 61.391 61.111 26.94 13.59 44.56 4.35
3009 6828 2.056223 AGCGCCTTAGGTCGCCTTA 61.056 57.895 26.94 0.00 44.56 2.69
3010 6829 1.881709 GCGCCTTAGGTCGCCTTAC 60.882 63.158 22.66 2.55 40.38 2.34
3011 6830 1.227176 CGCCTTAGGTCGCCTTACC 60.227 63.158 0.00 0.00 40.06 2.85
3012 6831 1.227176 GCCTTAGGTCGCCTTACCG 60.227 63.158 0.00 0.00 44.77 4.02
3013 6832 1.227176 CCTTAGGTCGCCTTACCGC 60.227 63.158 3.71 0.00 44.77 5.68
3014 6833 1.227176 CTTAGGTCGCCTTACCGCC 60.227 63.158 3.71 0.00 44.77 6.13
3015 6834 1.673808 CTTAGGTCGCCTTACCGCCT 61.674 60.000 3.71 0.00 44.77 5.52
3016 6835 1.259840 TTAGGTCGCCTTACCGCCTT 61.260 55.000 3.71 0.00 44.77 4.35
3017 6836 0.395586 TAGGTCGCCTTACCGCCTTA 60.396 55.000 3.71 0.00 44.77 2.69
3018 6837 1.218854 GGTCGCCTTACCGCCTTAA 59.781 57.895 0.00 0.00 0.00 1.85
3019 6838 0.391528 GGTCGCCTTACCGCCTTAAA 60.392 55.000 0.00 0.00 0.00 1.52
3020 6839 1.441738 GTCGCCTTACCGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
3021 6840 1.805943 GTCGCCTTACCGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
3022 6841 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
3023 6842 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
3024 6843 2.030981 CGCCTTACCGCCTTAAAAACAA 60.031 45.455 0.00 0.00 0.00 2.83
3025 6844 3.366577 CGCCTTACCGCCTTAAAAACAAT 60.367 43.478 0.00 0.00 0.00 2.71
3026 6845 3.924073 GCCTTACCGCCTTAAAAACAATG 59.076 43.478 0.00 0.00 0.00 2.82
3027 6846 4.490743 CCTTACCGCCTTAAAAACAATGG 58.509 43.478 0.00 0.00 0.00 3.16
3028 6847 2.448926 ACCGCCTTAAAAACAATGGC 57.551 45.000 0.00 0.00 40.14 4.40
3029 6848 1.967779 ACCGCCTTAAAAACAATGGCT 59.032 42.857 0.00 0.00 41.25 4.75
3030 6849 2.367241 ACCGCCTTAAAAACAATGGCTT 59.633 40.909 0.00 0.00 41.25 4.35
3031 6850 3.574826 ACCGCCTTAAAAACAATGGCTTA 59.425 39.130 0.00 0.00 41.25 3.09
3032 6851 3.924073 CCGCCTTAAAAACAATGGCTTAC 59.076 43.478 0.00 0.00 41.25 2.34
3033 6852 4.551388 CGCCTTAAAAACAATGGCTTACA 58.449 39.130 0.00 0.00 41.25 2.41
3148 6978 7.635648 TGTAGCCAAATTAAGTAGGGTTGTAT 58.364 34.615 0.00 0.00 33.33 2.29
3421 7251 3.651803 TGTCCGTTGCTTTTATTTGGG 57.348 42.857 0.00 0.00 0.00 4.12
3422 7252 3.223435 TGTCCGTTGCTTTTATTTGGGA 58.777 40.909 0.00 0.00 0.00 4.37
3473 7304 8.677148 ACATAGTTTTTCTTCTTACAAGCTGA 57.323 30.769 0.00 0.00 0.00 4.26
3878 7709 7.304735 TCAAATGATGACTGGTAATGTTTTCG 58.695 34.615 0.00 0.00 31.50 3.46
3879 7710 5.818136 ATGATGACTGGTAATGTTTTCGG 57.182 39.130 0.00 0.00 0.00 4.30
3893 7724 2.543777 TTTCGGCACTTTCTAGCTGT 57.456 45.000 0.00 0.00 38.28 4.40
3923 7754 5.964758 TCTTGCACTTCTTGTTTCACATTT 58.035 33.333 0.00 0.00 0.00 2.32
3991 7822 3.118847 TGAGCTGGAAGTGCATCTCTTAG 60.119 47.826 0.00 0.00 35.30 2.18
4047 7878 4.675190 AGATTGTTGTTGATTCTCAGCG 57.325 40.909 0.00 0.00 29.60 5.18
4150 7981 1.295792 TGAACTGTTTGCTCGTGACC 58.704 50.000 0.00 0.00 0.00 4.02
4234 8065 0.108585 AGCAAAGACATCGGGTGTGT 59.891 50.000 0.00 0.00 42.36 3.72
4243 8074 1.464608 CATCGGGTGTGTACTGCAAAG 59.535 52.381 0.00 0.00 0.00 2.77
4268 8099 6.599638 GCTTATGAATCATATAACCCACTCCC 59.400 42.308 3.54 0.00 0.00 4.30
4287 8119 8.850156 CCACTCCCATTCCTATTTATTTGTTAG 58.150 37.037 0.00 0.00 0.00 2.34
4419 8255 9.368416 AGGTTTATATAGAGCTTACTGTCATCA 57.632 33.333 0.00 0.00 0.00 3.07
4430 8266 2.967599 CTGTCATCACAGGAATCCGA 57.032 50.000 0.00 0.00 45.75 4.55
4436 8272 1.924731 TCACAGGAATCCGAGACAGT 58.075 50.000 0.00 0.00 0.00 3.55
4437 8273 2.248248 TCACAGGAATCCGAGACAGTT 58.752 47.619 0.00 0.00 0.00 3.16
4438 8274 2.029020 TCACAGGAATCCGAGACAGTTG 60.029 50.000 0.00 0.00 0.00 3.16
4439 8275 1.276421 ACAGGAATCCGAGACAGTTGG 59.724 52.381 0.00 0.00 0.00 3.77
4440 8276 1.550524 CAGGAATCCGAGACAGTTGGA 59.449 52.381 0.00 0.00 43.62 3.53
4441 8277 2.028112 CAGGAATCCGAGACAGTTGGAA 60.028 50.000 0.00 0.00 42.62 3.53
4442 8278 2.028020 AGGAATCCGAGACAGTTGGAAC 60.028 50.000 0.00 0.00 42.62 3.62
4450 8290 1.828331 GACAGTTGGAACGTGCCGAC 61.828 60.000 24.03 24.03 41.79 4.79
4484 8324 7.515841 CGTGCTGTTACTGATGTTATCTTCATC 60.516 40.741 0.00 0.00 41.16 2.92
4485 8325 7.278646 GTGCTGTTACTGATGTTATCTTCATCA 59.721 37.037 8.06 8.06 45.93 3.07
4486 8326 7.989170 TGCTGTTACTGATGTTATCTTCATCAT 59.011 33.333 8.66 3.72 46.55 2.45
4487 8327 8.494347 GCTGTTACTGATGTTATCTTCATCATC 58.506 37.037 8.66 0.00 46.55 2.92
4542 8382 4.262808 CCAATAGAGGAGAAATCTGGCGAT 60.263 45.833 0.00 0.00 0.00 4.58
4557 8397 1.604604 GCGATGAGAGAGCTAGGACT 58.395 55.000 0.00 0.00 0.00 3.85
4572 8412 3.525800 AGGACTTGGCTTTGTATTGGT 57.474 42.857 0.00 0.00 0.00 3.67
4585 8425 6.407525 GCTTTGTATTGGTAGGACAGATCTCT 60.408 42.308 0.00 0.00 0.00 3.10
4727 8567 6.601217 GGCAAAAGAAAGGATAGAGATTGACT 59.399 38.462 0.00 0.00 0.00 3.41
4728 8568 7.121907 GGCAAAAGAAAGGATAGAGATTGACTT 59.878 37.037 0.00 0.00 0.00 3.01
4729 8569 8.518702 GCAAAAGAAAGGATAGAGATTGACTTT 58.481 33.333 0.00 0.00 0.00 2.66
4730 8570 9.837525 CAAAAGAAAGGATAGAGATTGACTTTG 57.162 33.333 0.00 0.00 0.00 2.77
4731 8571 9.799106 AAAAGAAAGGATAGAGATTGACTTTGA 57.201 29.630 0.00 0.00 0.00 2.69
4732 8572 8.785329 AAGAAAGGATAGAGATTGACTTTGAC 57.215 34.615 0.00 0.00 0.00 3.18
4932 8773 5.828299 TGGTTCAGTTTTCATCGAGTTTT 57.172 34.783 0.00 0.00 0.00 2.43
5085 8938 0.031994 ACAAGAACGGCCATTGTTGC 59.968 50.000 20.06 3.08 36.55 4.17
5086 8939 0.031857 CAAGAACGGCCATTGTTGCA 59.968 50.000 8.60 0.00 0.00 4.08
5110 9068 8.854312 GCATGTTAAGTTTCAGAAAAGCTATTC 58.146 33.333 0.00 0.00 0.00 1.75
5111 9069 9.346725 CATGTTAAGTTTCAGAAAAGCTATTCC 57.653 33.333 0.00 0.00 0.00 3.01
5112 9070 7.882179 TGTTAAGTTTCAGAAAAGCTATTCCC 58.118 34.615 0.00 0.00 0.00 3.97
5113 9071 7.724061 TGTTAAGTTTCAGAAAAGCTATTCCCT 59.276 33.333 0.00 0.00 0.00 4.20
5114 9072 6.825944 AAGTTTCAGAAAAGCTATTCCCTC 57.174 37.500 0.00 0.00 0.00 4.30
5115 9073 5.257262 AGTTTCAGAAAAGCTATTCCCTCC 58.743 41.667 0.00 0.00 0.00 4.30
5116 9074 4.927267 TTCAGAAAAGCTATTCCCTCCA 57.073 40.909 0.00 0.00 0.00 3.86
5117 9075 4.927267 TCAGAAAAGCTATTCCCTCCAA 57.073 40.909 0.00 0.00 0.00 3.53
5119 9077 5.440610 TCAGAAAAGCTATTCCCTCCAATC 58.559 41.667 0.00 0.00 0.00 2.67
5120 9078 4.582240 CAGAAAAGCTATTCCCTCCAATCC 59.418 45.833 0.00 0.00 0.00 3.01
5121 9079 4.230502 AGAAAAGCTATTCCCTCCAATCCA 59.769 41.667 0.00 0.00 0.00 3.41
5123 9081 5.930209 AAAGCTATTCCCTCCAATCCATA 57.070 39.130 0.00 0.00 0.00 2.74
5124 9082 6.474918 AAAGCTATTCCCTCCAATCCATAT 57.525 37.500 0.00 0.00 0.00 1.78
5126 9084 7.588866 AAGCTATTCCCTCCAATCCATATTA 57.411 36.000 0.00 0.00 0.00 0.98
5127 9085 7.588866 AGCTATTCCCTCCAATCCATATTAA 57.411 36.000 0.00 0.00 0.00 1.40
5130 9088 8.689972 GCTATTCCCTCCAATCCATATTAATTG 58.310 37.037 0.00 1.40 33.57 2.32
5131 9089 9.979897 CTATTCCCTCCAATCCATATTAATTGA 57.020 33.333 7.95 0.00 35.35 2.57
5132 9090 8.655935 ATTCCCTCCAATCCATATTAATTGAC 57.344 34.615 7.95 0.00 35.35 3.18
5134 9092 5.106157 CCCTCCAATCCATATTAATTGACGC 60.106 44.000 7.95 0.00 35.35 5.19
5136 9094 6.128172 CCTCCAATCCATATTAATTGACGCTC 60.128 42.308 7.95 0.00 35.35 5.03
5137 9095 6.295249 TCCAATCCATATTAATTGACGCTCA 58.705 36.000 7.95 0.00 35.35 4.26
5138 9096 6.204688 TCCAATCCATATTAATTGACGCTCAC 59.795 38.462 7.95 0.00 35.35 3.51
5140 9098 7.255242 CCAATCCATATTAATTGACGCTCACTT 60.255 37.037 7.95 0.00 35.35 3.16
5142 9100 7.946655 TCCATATTAATTGACGCTCACTTAG 57.053 36.000 0.00 0.00 0.00 2.18
5144 9102 8.635328 TCCATATTAATTGACGCTCACTTAGTA 58.365 33.333 0.00 0.00 0.00 1.82
5145 9103 8.700644 CCATATTAATTGACGCTCACTTAGTAC 58.299 37.037 0.00 0.00 0.00 2.73
5146 9104 9.464714 CATATTAATTGACGCTCACTTAGTACT 57.535 33.333 0.00 0.00 0.00 2.73
5148 9106 3.844577 TTGACGCTCACTTAGTACTCC 57.155 47.619 0.00 0.00 0.00 3.85
5149 9107 2.089980 TGACGCTCACTTAGTACTCCC 58.910 52.381 0.00 0.00 0.00 4.30
5150 9108 2.290768 TGACGCTCACTTAGTACTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
5151 9109 2.355444 GACGCTCACTTAGTACTCCCTC 59.645 54.545 0.00 0.00 0.00 4.30
5152 9110 1.677052 CGCTCACTTAGTACTCCCTCC 59.323 57.143 0.00 0.00 0.00 4.30
5153 9111 1.677052 GCTCACTTAGTACTCCCTCCG 59.323 57.143 0.00 0.00 0.00 4.63
5156 9114 3.350833 TCACTTAGTACTCCCTCCGTTC 58.649 50.000 0.00 0.00 0.00 3.95
5157 9115 3.009916 TCACTTAGTACTCCCTCCGTTCT 59.990 47.826 0.00 0.00 0.00 3.01
5159 9117 3.009916 ACTTAGTACTCCCTCCGTTCTCA 59.990 47.826 0.00 0.00 0.00 3.27
5160 9118 2.599408 AGTACTCCCTCCGTTCTCAA 57.401 50.000 0.00 0.00 0.00 3.02
5161 9119 2.885616 AGTACTCCCTCCGTTCTCAAA 58.114 47.619 0.00 0.00 0.00 2.69
5162 9120 3.442076 AGTACTCCCTCCGTTCTCAAAT 58.558 45.455 0.00 0.00 0.00 2.32
5163 9121 4.607239 AGTACTCCCTCCGTTCTCAAATA 58.393 43.478 0.00 0.00 0.00 1.40
5164 9122 5.209659 AGTACTCCCTCCGTTCTCAAATAT 58.790 41.667 0.00 0.00 0.00 1.28
5165 9123 6.371278 AGTACTCCCTCCGTTCTCAAATATA 58.629 40.000 0.00 0.00 0.00 0.86
5166 9124 6.837568 AGTACTCCCTCCGTTCTCAAATATAA 59.162 38.462 0.00 0.00 0.00 0.98
5167 9125 6.163135 ACTCCCTCCGTTCTCAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
5169 9127 6.158023 TCCCTCCGTTCTCAAATATAAGTC 57.842 41.667 0.00 0.00 0.00 3.01
5170 9128 5.897824 TCCCTCCGTTCTCAAATATAAGTCT 59.102 40.000 0.00 0.00 0.00 3.24
5171 9129 6.383147 TCCCTCCGTTCTCAAATATAAGTCTT 59.617 38.462 0.00 0.00 0.00 3.01
5172 9130 7.048512 CCCTCCGTTCTCAAATATAAGTCTTT 58.951 38.462 0.00 0.00 0.00 2.52
5173 9131 7.011482 CCCTCCGTTCTCAAATATAAGTCTTTG 59.989 40.741 0.00 0.00 34.41 2.77
5174 9132 7.549488 CCTCCGTTCTCAAATATAAGTCTTTGT 59.451 37.037 0.00 0.00 34.66 2.83
5175 9133 9.582431 CTCCGTTCTCAAATATAAGTCTTTGTA 57.418 33.333 0.00 0.00 34.66 2.41
5176 9134 9.582431 TCCGTTCTCAAATATAAGTCTTTGTAG 57.418 33.333 0.00 0.00 34.66 2.74
5177 9135 9.582431 CCGTTCTCAAATATAAGTCTTTGTAGA 57.418 33.333 0.00 0.00 34.66 2.59
5191 9149 9.956720 AAGTCTTTGTAGAGATTTCAACAAATG 57.043 29.630 0.00 0.00 40.09 2.32
5192 9150 9.342308 AGTCTTTGTAGAGATTTCAACAAATGA 57.658 29.630 0.00 0.00 40.09 2.57
5193 9151 9.387123 GTCTTTGTAGAGATTTCAACAAATGAC 57.613 33.333 0.00 0.00 40.09 3.06
5194 9152 9.342308 TCTTTGTAGAGATTTCAACAAATGACT 57.658 29.630 0.00 0.00 40.09 3.41
5197 9155 9.554395 TTGTAGAGATTTCAACAAATGACTACA 57.446 29.630 0.00 0.00 40.60 2.74
5198 9156 9.725019 TGTAGAGATTTCAACAAATGACTACAT 57.275 29.630 0.00 0.00 39.34 2.29
5201 9159 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
5202 9160 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
5203 9161 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
5206 9164 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
5208 9166 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
5210 9168 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
5211 9169 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
5212 9170 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
5213 9171 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
5214 9172 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5215 9173 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5216 9174 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5217 9175 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5218 9176 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5219 9177 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5220 9178 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5221 9179 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5222 9180 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5223 9181 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5224 9182 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
5247 9205 9.947669 ACACTCTAAAATATGTCTACGTACATC 57.052 33.333 7.22 0.00 40.52 3.06
5248 9206 9.395707 CACTCTAAAATATGTCTACGTACATCC 57.604 37.037 7.22 0.00 40.52 3.51
5249 9207 8.288208 ACTCTAAAATATGTCTACGTACATCCG 58.712 37.037 7.22 0.00 40.52 4.18
5250 9208 8.158169 TCTAAAATATGTCTACGTACATCCGT 57.842 34.615 7.22 0.00 44.50 4.69
5251 9209 9.271828 TCTAAAATATGTCTACGTACATCCGTA 57.728 33.333 7.22 0.00 42.00 4.02
5253 9211 8.961294 AAAATATGTCTACGTACATCCGTATC 57.039 34.615 7.22 0.00 41.95 2.24
5254 9212 7.918536 AATATGTCTACGTACATCCGTATCT 57.081 36.000 7.22 0.00 41.95 1.98
5255 9213 7.918536 ATATGTCTACGTACATCCGTATCTT 57.081 36.000 7.22 0.00 41.95 2.40
5259 9217 8.471361 TGTCTACGTACATCCGTATCTTATAG 57.529 38.462 0.00 0.00 41.95 1.31
5262 9220 8.526978 TCTACGTACATCCGTATCTTATAGTCT 58.473 37.037 0.00 0.00 41.95 3.24
5301 9259 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
5305 9263 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5306 9264 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5307 9265 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
5308 9266 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
5309 9267 2.905415 TAGGAACGGAGGGAGTACAA 57.095 50.000 0.00 0.00 0.00 2.41
5310 9268 1.264295 AGGAACGGAGGGAGTACAAC 58.736 55.000 0.00 0.00 0.00 3.32
5311 9269 1.203149 AGGAACGGAGGGAGTACAACT 60.203 52.381 0.00 0.00 0.00 3.16
5312 9270 1.622312 GGAACGGAGGGAGTACAACTT 59.378 52.381 0.00 0.00 0.00 2.66
5313 9271 2.038164 GGAACGGAGGGAGTACAACTTT 59.962 50.000 0.00 0.00 0.00 2.66
5314 9272 3.259123 GGAACGGAGGGAGTACAACTTTA 59.741 47.826 0.00 0.00 0.00 1.85
5315 9273 4.081254 GGAACGGAGGGAGTACAACTTTAT 60.081 45.833 0.00 0.00 0.00 1.40
5316 9274 5.485620 GAACGGAGGGAGTACAACTTTATT 58.514 41.667 0.00 0.00 0.00 1.40
5317 9275 6.351286 GGAACGGAGGGAGTACAACTTTATTA 60.351 42.308 0.00 0.00 0.00 0.98
5318 9276 5.970592 ACGGAGGGAGTACAACTTTATTAC 58.029 41.667 0.00 0.00 0.00 1.89
5319 9277 5.718607 ACGGAGGGAGTACAACTTTATTACT 59.281 40.000 0.00 0.00 0.00 2.24
5327 9285 5.718607 AGTACAACTTTATTACTCCCTCCGT 59.281 40.000 0.00 0.00 0.00 4.69
5328 9286 5.494390 ACAACTTTATTACTCCCTCCGTT 57.506 39.130 0.00 0.00 0.00 4.44
5331 9289 6.171213 CAACTTTATTACTCCCTCCGTTCTT 58.829 40.000 0.00 0.00 0.00 2.52
5332 9290 7.038799 ACAACTTTATTACTCCCTCCGTTCTTA 60.039 37.037 0.00 0.00 0.00 2.10
5333 9291 7.486407 ACTTTATTACTCCCTCCGTTCTTAA 57.514 36.000 0.00 0.00 0.00 1.85
5334 9292 7.910584 ACTTTATTACTCCCTCCGTTCTTAAA 58.089 34.615 0.00 0.00 0.00 1.52
5341 9299 7.909485 ACTCCCTCCGTTCTTAAATATAAGA 57.091 36.000 0.00 0.00 44.48 2.10
5343 9301 7.059202 TCCCTCCGTTCTTAAATATAAGACC 57.941 40.000 0.00 0.00 45.52 3.85
5344 9302 6.842807 TCCCTCCGTTCTTAAATATAAGACCT 59.157 38.462 0.00 0.00 45.52 3.85
5345 9303 7.346436 TCCCTCCGTTCTTAAATATAAGACCTT 59.654 37.037 0.00 0.00 45.52 3.50
5346 9304 7.991460 CCCTCCGTTCTTAAATATAAGACCTTT 59.009 37.037 0.00 0.00 45.52 3.11
5347 9305 9.392259 CCTCCGTTCTTAAATATAAGACCTTTT 57.608 33.333 0.00 0.00 45.52 2.27
5403 9965 6.095440 TCAGCAACAAGGAGAAATAATTAGCC 59.905 38.462 0.00 0.00 0.00 3.93
5412 9974 8.688747 AGGAGAAATAATTAGCCTCAGAAATG 57.311 34.615 11.31 0.00 0.00 2.32
5413 9975 7.230309 AGGAGAAATAATTAGCCTCAGAAATGC 59.770 37.037 11.31 0.00 0.00 3.56
5420 9982 5.880054 TTAGCCTCAGAAATGCAAGTTAC 57.120 39.130 0.00 0.00 0.00 2.50
5423 9985 4.584325 AGCCTCAGAAATGCAAGTTACAAA 59.416 37.500 0.00 0.00 0.00 2.83
5424 9986 4.681483 GCCTCAGAAATGCAAGTTACAAAC 59.319 41.667 0.00 0.00 0.00 2.93
5599 10163 8.886719 CATTATTAAGAGACTGCACATTCAGAA 58.113 33.333 0.00 0.00 37.51 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.280174 CAGGGTTTTACACACTCTTTTTATCTA 57.720 33.333 0.00 0.00 36.80 1.98
8 9 7.937649 ACAGGGTTTTACACACTCTTTTTATC 58.062 34.615 0.00 0.00 36.80 1.75
9 10 7.891498 ACAGGGTTTTACACACTCTTTTTAT 57.109 32.000 0.00 0.00 36.80 1.40
10 11 8.676401 GTTACAGGGTTTTACACACTCTTTTTA 58.324 33.333 0.00 0.00 36.80 1.52
11 12 7.395206 AGTTACAGGGTTTTACACACTCTTTTT 59.605 33.333 0.00 0.00 36.80 1.94
12 13 6.888088 AGTTACAGGGTTTTACACACTCTTTT 59.112 34.615 0.00 0.00 36.80 2.27
13 14 6.317893 CAGTTACAGGGTTTTACACACTCTTT 59.682 38.462 0.00 0.00 36.80 2.52
14 15 5.820947 CAGTTACAGGGTTTTACACACTCTT 59.179 40.000 0.00 0.00 36.80 2.85
15 16 5.104652 ACAGTTACAGGGTTTTACACACTCT 60.105 40.000 0.00 0.00 36.80 3.24
16 17 5.121105 ACAGTTACAGGGTTTTACACACTC 58.879 41.667 0.00 0.00 36.80 3.51
17 18 5.106876 ACAGTTACAGGGTTTTACACACT 57.893 39.130 0.00 0.00 41.33 3.55
18 19 5.823209 AACAGTTACAGGGTTTTACACAC 57.177 39.130 0.00 0.00 0.00 3.82
19 20 5.711036 ACAAACAGTTACAGGGTTTTACACA 59.289 36.000 0.00 0.00 32.79 3.72
20 21 6.198650 ACAAACAGTTACAGGGTTTTACAC 57.801 37.500 0.00 0.00 32.79 2.90
21 22 6.036953 CGTACAAACAGTTACAGGGTTTTACA 59.963 38.462 0.00 0.00 32.79 2.41
22 23 6.037062 ACGTACAAACAGTTACAGGGTTTTAC 59.963 38.462 0.00 0.00 32.79 2.01
23 24 6.112058 ACGTACAAACAGTTACAGGGTTTTA 58.888 36.000 0.00 0.00 32.79 1.52
24 25 4.943093 ACGTACAAACAGTTACAGGGTTTT 59.057 37.500 0.00 0.00 32.79 2.43
25 26 4.516323 ACGTACAAACAGTTACAGGGTTT 58.484 39.130 0.00 0.00 35.27 3.27
26 27 4.122046 GACGTACAAACAGTTACAGGGTT 58.878 43.478 0.00 0.00 0.00 4.11
27 28 3.385755 AGACGTACAAACAGTTACAGGGT 59.614 43.478 0.00 0.00 0.00 4.34
28 29 3.986277 AGACGTACAAACAGTTACAGGG 58.014 45.455 0.00 0.00 0.00 4.45
29 30 4.620184 GCTAGACGTACAAACAGTTACAGG 59.380 45.833 0.00 0.00 0.00 4.00
30 31 5.217393 TGCTAGACGTACAAACAGTTACAG 58.783 41.667 0.00 0.00 0.00 2.74
31 32 5.185668 TGCTAGACGTACAAACAGTTACA 57.814 39.130 0.00 0.00 0.00 2.41
32 33 6.701432 AATGCTAGACGTACAAACAGTTAC 57.299 37.500 0.00 0.00 0.00 2.50
33 34 7.718272 AAAATGCTAGACGTACAAACAGTTA 57.282 32.000 0.00 0.00 0.00 2.24
34 35 6.613755 AAAATGCTAGACGTACAAACAGTT 57.386 33.333 0.00 0.00 0.00 3.16
35 36 6.427150 CAAAAATGCTAGACGTACAAACAGT 58.573 36.000 0.00 0.00 0.00 3.55
36 37 5.851177 CCAAAAATGCTAGACGTACAAACAG 59.149 40.000 0.00 0.00 0.00 3.16
37 38 5.278071 CCCAAAAATGCTAGACGTACAAACA 60.278 40.000 0.00 0.00 0.00 2.83
38 39 5.151389 CCCAAAAATGCTAGACGTACAAAC 58.849 41.667 0.00 0.00 0.00 2.93
39 40 4.822896 ACCCAAAAATGCTAGACGTACAAA 59.177 37.500 0.00 0.00 0.00 2.83
40 41 4.391155 ACCCAAAAATGCTAGACGTACAA 58.609 39.130 0.00 0.00 0.00 2.41
41 42 4.010667 ACCCAAAAATGCTAGACGTACA 57.989 40.909 0.00 0.00 0.00 2.90
42 43 4.379082 CCAACCCAAAAATGCTAGACGTAC 60.379 45.833 0.00 0.00 0.00 3.67
43 44 3.754323 CCAACCCAAAAATGCTAGACGTA 59.246 43.478 0.00 0.00 0.00 3.57
44 45 2.556622 CCAACCCAAAAATGCTAGACGT 59.443 45.455 0.00 0.00 0.00 4.34
45 46 2.671070 GCCAACCCAAAAATGCTAGACG 60.671 50.000 0.00 0.00 0.00 4.18
46 47 2.353704 GGCCAACCCAAAAATGCTAGAC 60.354 50.000 0.00 0.00 0.00 2.59
47 48 1.899142 GGCCAACCCAAAAATGCTAGA 59.101 47.619 0.00 0.00 0.00 2.43
48 49 2.385013 GGCCAACCCAAAAATGCTAG 57.615 50.000 0.00 0.00 0.00 3.42
107 108 2.296792 CACCGATCCATTATGCCACAA 58.703 47.619 0.00 0.00 0.00 3.33
115 116 3.078097 CAACAACCACACCGATCCATTA 58.922 45.455 0.00 0.00 0.00 1.90
117 118 1.533625 CAACAACCACACCGATCCAT 58.466 50.000 0.00 0.00 0.00 3.41
138 139 1.107538 CCCGAGATCGTGCCTTCCTA 61.108 60.000 1.09 0.00 37.74 2.94
234 491 3.758554 GCCCATGAAGTGAGTGTATGTTT 59.241 43.478 0.00 0.00 0.00 2.83
235 492 3.009473 AGCCCATGAAGTGAGTGTATGTT 59.991 43.478 0.00 0.00 0.00 2.71
431 703 3.518303 TCTTCTAGTTCTTTGGGTAGGGC 59.482 47.826 0.00 0.00 0.00 5.19
432 704 5.248705 AGTTCTTCTAGTTCTTTGGGTAGGG 59.751 44.000 0.00 0.00 0.00 3.53
474 748 8.711457 GCAATTTTGTACTTATTTCACATGCTT 58.289 29.630 0.00 0.00 0.00 3.91
547 4036 5.561532 TGACAAAGAAGTCGACGTAGTTAGG 60.562 44.000 10.46 3.63 38.59 2.69
555 4044 0.776451 CGGTGACAAAGAAGTCGACG 59.224 55.000 10.46 0.00 41.41 5.12
562 4051 3.061322 CGGTACATTCGGTGACAAAGAA 58.939 45.455 0.00 0.00 0.00 2.52
564 4053 2.409975 ACGGTACATTCGGTGACAAAG 58.590 47.619 0.00 0.00 0.00 2.77
567 4056 2.068837 GAACGGTACATTCGGTGACA 57.931 50.000 0.00 0.00 0.00 3.58
576 4065 4.825252 GGCGGCCGAACGGTACAT 62.825 66.667 33.48 0.00 37.65 2.29
595 4092 2.274232 TAACCATGGAGACGTCGGCG 62.274 60.000 21.47 8.42 44.93 6.46
602 4099 3.914426 AGTGGATGTAACCATGGAGAC 57.086 47.619 21.47 15.82 42.17 3.36
604 4101 3.492656 CGGTAGTGGATGTAACCATGGAG 60.493 52.174 21.47 0.00 42.17 3.86
607 4104 2.169769 ACCGGTAGTGGATGTAACCATG 59.830 50.000 4.49 0.00 42.17 3.66
608 4105 2.169769 CACCGGTAGTGGATGTAACCAT 59.830 50.000 6.87 0.00 43.26 3.55
609 4106 1.551430 CACCGGTAGTGGATGTAACCA 59.449 52.381 6.87 0.00 43.26 3.67
620 4117 1.301165 GCCGTGTTTCACCGGTAGT 60.301 57.895 6.87 0.00 33.22 2.73
621 4118 0.881159 TTGCCGTGTTTCACCGGTAG 60.881 55.000 6.87 1.53 33.22 3.18
622 4119 1.145598 TTGCCGTGTTTCACCGGTA 59.854 52.632 6.87 0.00 33.22 4.02
623 4120 2.124653 TTGCCGTGTTTCACCGGT 60.125 55.556 0.00 0.00 33.22 5.28
624 4121 1.791103 ATGTTGCCGTGTTTCACCGG 61.791 55.000 0.00 0.00 33.57 5.28
625 4122 0.030101 AATGTTGCCGTGTTTCACCG 59.970 50.000 0.00 0.00 0.00 4.94
626 4123 1.857837 CAAATGTTGCCGTGTTTCACC 59.142 47.619 0.00 0.00 0.00 4.02
629 4126 3.078594 ACTCAAATGTTGCCGTGTTTC 57.921 42.857 0.00 0.00 0.00 2.78
635 4132 1.468520 CCCAGTACTCAAATGTTGCCG 59.531 52.381 0.00 0.00 0.00 5.69
637 4134 3.689649 CCTACCCAGTACTCAAATGTTGC 59.310 47.826 0.00 0.00 0.00 4.17
648 4145 5.031066 TCATGCATAAACCTACCCAGTAC 57.969 43.478 0.00 0.00 0.00 2.73
650 4147 3.780294 TCTCATGCATAAACCTACCCAGT 59.220 43.478 0.00 0.00 0.00 4.00
651 4148 4.422073 TCTCATGCATAAACCTACCCAG 57.578 45.455 0.00 0.00 0.00 4.45
652 4149 4.853468 TTCTCATGCATAAACCTACCCA 57.147 40.909 0.00 0.00 0.00 4.51
653 4150 6.152831 AGTTTTTCTCATGCATAAACCTACCC 59.847 38.462 15.22 0.00 30.93 3.69
654 4151 7.158099 AGTTTTTCTCATGCATAAACCTACC 57.842 36.000 15.22 0.00 30.93 3.18
658 4167 8.296713 TGTTCTAGTTTTTCTCATGCATAAACC 58.703 33.333 15.22 0.00 30.93 3.27
733 4269 4.992319 CACAGTTATTCACTTGGTCCGTAA 59.008 41.667 0.00 0.00 30.92 3.18
735 4271 3.070446 TCACAGTTATTCACTTGGTCCGT 59.930 43.478 0.00 0.00 30.92 4.69
736 4272 3.659786 TCACAGTTATTCACTTGGTCCG 58.340 45.455 0.00 0.00 30.92 4.79
829 4487 4.247380 CATGAGCCGGCTCTCCCC 62.247 72.222 46.04 28.10 43.12 4.81
858 4516 4.812476 CGATGCGCCCACGGAGAA 62.812 66.667 4.18 0.00 45.20 2.87
933 4591 0.109272 TCGTCTGAAAGCACTAGCCG 60.109 55.000 0.00 0.00 43.56 5.52
944 4602 1.809869 CGGAGATGGCTCGTCTGAA 59.190 57.895 2.12 0.00 42.25 3.02
945 4603 2.775856 GCGGAGATGGCTCGTCTGA 61.776 63.158 2.12 0.00 42.25 3.27
997 4655 3.570550 GTCGCTGAGATTAGTCCCATACT 59.429 47.826 0.00 0.00 42.62 2.12
1638 5306 1.736586 CTCTTCCGGCGATACAGCT 59.263 57.895 9.30 0.00 37.29 4.24
1810 5479 2.512515 CTCAGCCTTACCAGCCGC 60.513 66.667 0.00 0.00 0.00 6.53
1835 5504 2.022129 GCGTCCTTCACCTGACACG 61.022 63.158 0.00 0.00 0.00 4.49
1887 5557 3.655211 CCAGCCTGAAGCCACCCT 61.655 66.667 0.00 0.00 45.47 4.34
1922 5599 2.681778 CTGCCCCGACTCTCACCT 60.682 66.667 0.00 0.00 0.00 4.00
2092 5789 5.305585 CAAGTTAGCTAGGGAGTCAAACAA 58.694 41.667 0.00 0.00 0.00 2.83
2320 6037 7.793036 AGTTCTATAAACAGGGGTGATAGTTC 58.207 38.462 0.00 0.00 30.88 3.01
2408 6126 9.595823 GACCAGTTACTTCAGTAAGCAATTATA 57.404 33.333 0.00 0.00 40.74 0.98
2528 6337 1.595311 ATATCACCCCAGGCAGTCAA 58.405 50.000 0.00 0.00 0.00 3.18
2600 6409 5.200483 AGTTCAATTTCCAGACCAAACTGA 58.800 37.500 0.00 0.00 39.94 3.41
2770 6589 4.806775 GCTGGCTTTAGTTTCTAGACTAGC 59.193 45.833 4.47 0.00 33.91 3.42
2848 6667 7.820872 AGCTACTAACGGAAATAAAACTAAGCA 59.179 33.333 0.00 0.00 0.00 3.91
2853 6672 7.156673 TGTCAGCTACTAACGGAAATAAAACT 58.843 34.615 0.00 0.00 0.00 2.66
2879 6698 3.926821 GGGACGCCTTAAAAACAATGA 57.073 42.857 0.00 0.00 0.00 2.57
2896 6715 2.998480 TAAGCGTCCAAGGCGGGA 60.998 61.111 0.00 0.00 33.62 5.14
2897 6716 2.511600 CTAAGCGTCCAAGGCGGG 60.512 66.667 5.39 0.00 33.62 6.13
2898 6717 2.511600 CCTAAGCGTCCAAGGCGG 60.512 66.667 5.39 0.00 33.62 6.13
2899 6718 3.195698 GCCTAAGCGTCCAAGGCG 61.196 66.667 0.00 0.00 45.82 5.52
2933 6752 4.338710 TAAGGCGGGCAAGGCGTT 62.339 61.111 3.78 7.35 40.98 4.84
2934 6753 4.778143 CTAAGGCGGGCAAGGCGT 62.778 66.667 3.78 0.47 41.99 5.68
2966 6785 1.371558 GGGTGCCTTATCGCCTAGG 59.628 63.158 3.67 3.67 36.85 3.02
2967 6786 1.371558 GGGGTGCCTTATCGCCTAG 59.628 63.158 0.00 0.00 36.85 3.02
2968 6787 2.144738 GGGGGTGCCTTATCGCCTA 61.145 63.158 0.00 0.00 39.36 3.93
2969 6788 3.489513 GGGGGTGCCTTATCGCCT 61.490 66.667 0.00 0.00 39.36 5.52
2986 6805 4.176752 GACCTAAGGCGCTGGGGG 62.177 72.222 7.64 7.91 0.00 5.40
2987 6806 4.530857 CGACCTAAGGCGCTGGGG 62.531 72.222 7.64 7.52 0.00 4.96
2990 6809 2.292794 TAAGGCGACCTAAGGCGCTG 62.293 60.000 20.95 0.00 43.61 5.18
2991 6810 2.056223 TAAGGCGACCTAAGGCGCT 61.056 57.895 20.95 8.24 43.61 5.92
2992 6811 1.881709 GTAAGGCGACCTAAGGCGC 60.882 63.158 15.21 15.21 43.47 6.53
2993 6812 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.00 39.33 5.52
2994 6813 1.227176 CGGTAAGGCGACCTAAGGC 60.227 63.158 9.52 0.00 37.34 4.35
2995 6814 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.00 37.34 2.69
2996 6815 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.00 37.34 2.18
2997 6816 2.894919 GGCGGTAAGGCGACCTAA 59.105 61.111 9.52 0.00 37.34 2.69
3005 6824 4.490743 CCATTGTTTTTAAGGCGGTAAGG 58.509 43.478 0.00 0.00 0.00 2.69
3006 6825 3.924073 GCCATTGTTTTTAAGGCGGTAAG 59.076 43.478 0.00 0.00 35.42 2.34
3007 6826 3.915536 GCCATTGTTTTTAAGGCGGTAA 58.084 40.909 0.00 0.00 35.42 2.85
3008 6827 3.579335 GCCATTGTTTTTAAGGCGGTA 57.421 42.857 0.00 0.00 35.42 4.02
3009 6828 2.448926 GCCATTGTTTTTAAGGCGGT 57.551 45.000 0.00 0.00 35.42 5.68
3023 6842 7.283127 CCTAGTAATCACACAATGTAAGCCATT 59.717 37.037 0.00 0.00 44.73 3.16
3024 6843 6.767902 CCTAGTAATCACACAATGTAAGCCAT 59.232 38.462 0.00 0.00 34.36 4.40
3025 6844 6.070481 TCCTAGTAATCACACAATGTAAGCCA 60.070 38.462 0.00 0.00 0.00 4.75
3026 6845 6.346096 TCCTAGTAATCACACAATGTAAGCC 58.654 40.000 0.00 0.00 0.00 4.35
3027 6846 7.549488 AGTTCCTAGTAATCACACAATGTAAGC 59.451 37.037 0.00 0.00 0.00 3.09
3031 6850 9.959721 AATTAGTTCCTAGTAATCACACAATGT 57.040 29.630 0.00 0.00 30.34 2.71
3148 6978 7.935338 AACGAATCAACGAAGAAACTTAGTA 57.065 32.000 0.00 0.00 37.03 1.82
3396 7226 6.386654 CCAAATAAAAGCAACGGACAAGTAT 58.613 36.000 0.00 0.00 0.00 2.12
3399 7229 3.987220 CCCAAATAAAAGCAACGGACAAG 59.013 43.478 0.00 0.00 0.00 3.16
3460 7290 9.301153 GAAGTCAAATTTTTCAGCTTGTAAGAA 57.699 29.630 0.00 0.00 0.00 2.52
3461 7291 8.686334 AGAAGTCAAATTTTTCAGCTTGTAAGA 58.314 29.630 4.40 0.00 0.00 2.10
3462 7292 8.749499 CAGAAGTCAAATTTTTCAGCTTGTAAG 58.251 33.333 4.40 0.00 0.00 2.34
3473 7304 6.239036 GCCACTCCTACAGAAGTCAAATTTTT 60.239 38.462 0.00 0.00 0.00 1.94
3477 7308 3.584848 AGCCACTCCTACAGAAGTCAAAT 59.415 43.478 0.00 0.00 0.00 2.32
3875 7706 1.608025 CCACAGCTAGAAAGTGCCGAA 60.608 52.381 0.00 0.00 32.09 4.30
3876 7707 0.037326 CCACAGCTAGAAAGTGCCGA 60.037 55.000 0.00 0.00 32.09 5.54
3878 7709 2.409948 ATCCACAGCTAGAAAGTGCC 57.590 50.000 0.00 0.00 32.09 5.01
3879 7710 5.363939 AGAATATCCACAGCTAGAAAGTGC 58.636 41.667 0.00 0.00 32.09 4.40
3893 7724 6.489700 TGAAACAAGAAGTGCAAGAATATCCA 59.510 34.615 0.00 0.00 0.00 3.41
3991 7822 7.678947 ATTAGTCAATATATGCAGTTCAGGC 57.321 36.000 0.00 0.00 0.00 4.85
4047 7878 4.638865 AGGAAACACAACAGTTGGTAAGAC 59.361 41.667 17.76 4.04 34.12 3.01
4150 7981 6.600246 ATGTGATCTCTCATTTCATCGTTG 57.400 37.500 0.00 0.00 32.98 4.10
4243 8074 6.599638 GGGAGTGGGTTATATGATTCATAAGC 59.400 42.308 10.30 6.63 36.22 3.09
4287 8119 6.264909 GCAATTGCAATTAGATTAGCACAC 57.735 37.500 25.36 0.82 41.59 3.82
4369 8201 7.547370 CCTTGGTTACTTACTTGAATCTCTGAG 59.453 40.741 0.00 0.00 0.00 3.35
4413 8249 2.166459 TGTCTCGGATTCCTGTGATGAC 59.834 50.000 0.30 2.61 0.00 3.06
4419 8255 1.276421 CCAACTGTCTCGGATTCCTGT 59.724 52.381 0.30 0.00 0.00 4.00
4430 8266 4.456806 GGCACGTTCCAACTGTCT 57.543 55.556 0.00 0.00 0.00 3.41
4484 8324 2.471818 CTGTCTCAGATTCCTGCGATG 58.528 52.381 0.00 0.00 36.63 3.84
4485 8325 1.411977 CCTGTCTCAGATTCCTGCGAT 59.588 52.381 0.00 0.00 36.63 4.58
4486 8326 0.820226 CCTGTCTCAGATTCCTGCGA 59.180 55.000 0.00 0.00 40.20 5.10
4487 8327 0.820226 TCCTGTCTCAGATTCCTGCG 59.180 55.000 0.00 0.00 40.20 5.18
4542 8382 1.006519 AGCCAAGTCCTAGCTCTCTCA 59.993 52.381 0.00 0.00 28.40 3.27
4557 8397 4.042311 TCTGTCCTACCAATACAAAGCCAA 59.958 41.667 0.00 0.00 0.00 4.52
4572 8412 3.769844 GTGGTTTGGAGAGATCTGTCCTA 59.230 47.826 32.42 25.29 42.94 2.94
4585 8425 1.152922 GTTCACGGGGTGGTTTGGA 60.153 57.895 0.00 0.00 33.87 3.53
4727 8567 2.560119 AAATGGCAGCGGCGTCAAA 61.560 52.632 9.37 0.00 42.47 2.69
4728 8568 2.983030 AAATGGCAGCGGCGTCAA 60.983 55.556 9.37 0.00 42.47 3.18
4729 8569 3.736100 CAAATGGCAGCGGCGTCA 61.736 61.111 9.37 2.69 42.47 4.35
4948 8789 6.245408 ACTATCCTTTGAACCAATGCAGTTA 58.755 36.000 0.00 0.00 0.00 2.24
5060 8913 2.811431 CAATGGCCGTTCTTGTTCACTA 59.189 45.455 7.40 0.00 0.00 2.74
5062 8915 1.336755 ACAATGGCCGTTCTTGTTCAC 59.663 47.619 7.40 0.00 29.06 3.18
5085 8938 9.346725 GGAATAGCTTTTCTGAAACTTAACATG 57.653 33.333 15.27 0.00 0.00 3.21
5086 8939 8.523658 GGGAATAGCTTTTCTGAAACTTAACAT 58.476 33.333 15.27 0.00 0.00 2.71
5110 9068 5.106157 GCGTCAATTAATATGGATTGGAGGG 60.106 44.000 9.98 2.10 34.74 4.30
5111 9069 5.707298 AGCGTCAATTAATATGGATTGGAGG 59.293 40.000 9.98 0.00 34.74 4.30
5112 9070 6.427853 TGAGCGTCAATTAATATGGATTGGAG 59.572 38.462 9.98 6.87 34.74 3.86
5113 9071 6.204688 GTGAGCGTCAATTAATATGGATTGGA 59.795 38.462 9.98 0.00 34.74 3.53
5114 9072 6.205464 AGTGAGCGTCAATTAATATGGATTGG 59.795 38.462 9.98 0.21 34.74 3.16
5115 9073 7.194607 AGTGAGCGTCAATTAATATGGATTG 57.805 36.000 5.39 5.39 35.18 2.67
5116 9074 7.807977 AAGTGAGCGTCAATTAATATGGATT 57.192 32.000 0.00 0.00 32.46 3.01
5117 9075 8.150945 ACTAAGTGAGCGTCAATTAATATGGAT 58.849 33.333 8.47 0.00 36.64 3.41
5119 9077 7.715265 ACTAAGTGAGCGTCAATTAATATGG 57.285 36.000 8.47 2.06 36.64 2.74
5120 9078 9.464714 AGTACTAAGTGAGCGTCAATTAATATG 57.535 33.333 0.00 0.00 36.64 1.78
5121 9079 9.680315 GAGTACTAAGTGAGCGTCAATTAATAT 57.320 33.333 0.00 2.74 36.64 1.28
5123 9081 6.979238 GGAGTACTAAGTGAGCGTCAATTAAT 59.021 38.462 0.00 3.29 36.64 1.40
5124 9082 6.327934 GGAGTACTAAGTGAGCGTCAATTAA 58.672 40.000 0.00 0.00 36.64 1.40
5126 9084 4.381718 GGGAGTACTAAGTGAGCGTCAATT 60.382 45.833 0.00 6.10 38.33 2.32
5127 9085 3.130693 GGGAGTACTAAGTGAGCGTCAAT 59.869 47.826 0.00 0.00 0.00 2.57
5130 9088 2.355444 GAGGGAGTACTAAGTGAGCGTC 59.645 54.545 0.00 0.00 0.00 5.19
5131 9089 2.367486 GAGGGAGTACTAAGTGAGCGT 58.633 52.381 0.00 0.00 0.00 5.07
5132 9090 1.677052 GGAGGGAGTACTAAGTGAGCG 59.323 57.143 0.00 0.00 0.00 5.03
5134 9092 3.002038 ACGGAGGGAGTACTAAGTGAG 57.998 52.381 0.00 0.00 0.00 3.51
5136 9094 3.354467 AGAACGGAGGGAGTACTAAGTG 58.646 50.000 0.00 0.00 0.00 3.16
5137 9095 3.009916 TGAGAACGGAGGGAGTACTAAGT 59.990 47.826 0.00 0.00 0.00 2.24
5138 9096 3.618351 TGAGAACGGAGGGAGTACTAAG 58.382 50.000 0.00 0.00 0.00 2.18
5140 9098 3.726557 TTGAGAACGGAGGGAGTACTA 57.273 47.619 0.00 0.00 0.00 1.82
5142 9100 3.889520 ATTTGAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
5144 9102 5.661759 ACTTATATTTGAGAACGGAGGGAGT 59.338 40.000 0.00 0.00 0.00 3.85
5145 9103 6.041069 AGACTTATATTTGAGAACGGAGGGAG 59.959 42.308 0.00 0.00 0.00 4.30
5146 9104 5.897824 AGACTTATATTTGAGAACGGAGGGA 59.102 40.000 0.00 0.00 0.00 4.20
5148 9106 7.549488 ACAAAGACTTATATTTGAGAACGGAGG 59.451 37.037 4.79 0.00 38.99 4.30
5149 9107 8.480643 ACAAAGACTTATATTTGAGAACGGAG 57.519 34.615 4.79 0.00 38.99 4.63
5150 9108 9.582431 CTACAAAGACTTATATTTGAGAACGGA 57.418 33.333 4.79 0.00 38.99 4.69
5151 9109 9.582431 TCTACAAAGACTTATATTTGAGAACGG 57.418 33.333 4.79 0.00 38.99 4.44
5171 9129 9.554395 TGTAGTCATTTGTTGAAATCTCTACAA 57.446 29.630 13.25 0.00 42.88 2.41
5172 9130 9.725019 ATGTAGTCATTTGTTGAAATCTCTACA 57.275 29.630 15.66 15.66 41.96 2.74
5175 9133 8.873830 CGTATGTAGTCATTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 35.70 3.10
5176 9134 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
5177 9135 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
5179 9137 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
5180 9138 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
5182 9140 4.868171 GCTCCGTATGTAGTCATTTGTTGA 59.132 41.667 0.00 0.00 35.70 3.18
5183 9141 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
5184 9142 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
5186 9144 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
5187 9145 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
5188 9146 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
5189 9147 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
5190 9148 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5191 9149 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
5192 9150 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5193 9151 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5194 9152 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5195 9153 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5196 9154 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5197 9155 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5198 9156 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5199 9157 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5201 9159 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5202 9160 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5221 9179 9.947669 GATGTACGTAGACATATTTTAGAGTGT 57.052 33.333 3.97 0.00 40.18 3.55
5222 9180 9.395707 GGATGTACGTAGACATATTTTAGAGTG 57.604 37.037 3.97 0.00 40.18 3.51
5223 9181 8.288208 CGGATGTACGTAGACATATTTTAGAGT 58.712 37.037 3.97 0.00 40.18 3.24
5224 9182 8.288208 ACGGATGTACGTAGACATATTTTAGAG 58.712 37.037 3.97 0.00 46.58 2.43
5275 9233 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
5276 9234 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5278 9236 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5279 9237 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5280 9238 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5281 9239 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5282 9240 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5283 9241 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
5284 9242 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
5285 9243 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5287 9245 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5288 9246 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5290 9248 2.042162 AGTTGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
5291 9249 1.203149 AGTTGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
5292 9250 1.264295 AGTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
5293 9251 3.397849 AAAGTTGTACTCCCTCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
5294 9252 5.494390 AATAAAGTTGTACTCCCTCCGTT 57.506 39.130 0.00 0.00 0.00 4.44
5295 9253 5.718607 AGTAATAAAGTTGTACTCCCTCCGT 59.281 40.000 0.00 0.00 0.00 4.69
5296 9254 6.218108 AGTAATAAAGTTGTACTCCCTCCG 57.782 41.667 0.00 0.00 0.00 4.63
5305 9263 6.438425 AGAACGGAGGGAGTAATAAAGTTGTA 59.562 38.462 0.00 0.00 0.00 2.41
5306 9264 5.247792 AGAACGGAGGGAGTAATAAAGTTGT 59.752 40.000 0.00 0.00 0.00 3.32
5307 9265 5.731591 AGAACGGAGGGAGTAATAAAGTTG 58.268 41.667 0.00 0.00 0.00 3.16
5308 9266 6.370186 AAGAACGGAGGGAGTAATAAAGTT 57.630 37.500 0.00 0.00 0.00 2.66
5309 9267 7.486407 TTAAGAACGGAGGGAGTAATAAAGT 57.514 36.000 0.00 0.00 0.00 2.66
5310 9268 8.959705 ATTTAAGAACGGAGGGAGTAATAAAG 57.040 34.615 0.00 0.00 0.00 1.85
5315 9273 9.425248 TCTTATATTTAAGAACGGAGGGAGTAA 57.575 33.333 3.43 0.00 40.64 2.24
5316 9274 8.854117 GTCTTATATTTAAGAACGGAGGGAGTA 58.146 37.037 7.14 0.00 44.12 2.59
5317 9275 7.201983 GGTCTTATATTTAAGAACGGAGGGAGT 60.202 40.741 7.14 0.00 44.12 3.85
5318 9276 7.153315 GGTCTTATATTTAAGAACGGAGGGAG 58.847 42.308 7.14 0.00 44.12 4.30
5319 9277 7.059202 GGTCTTATATTTAAGAACGGAGGGA 57.941 40.000 7.14 0.00 44.12 4.20
5355 9313 9.908152 CTGATCGCCGTATATAATCCATATTAA 57.092 33.333 0.00 0.00 31.44 1.40
5356 9314 8.027189 GCTGATCGCCGTATATAATCCATATTA 58.973 37.037 0.00 0.00 31.96 0.98
5357 9315 6.868864 GCTGATCGCCGTATATAATCCATATT 59.131 38.462 0.00 0.00 31.96 1.28
5358 9316 6.015434 TGCTGATCGCCGTATATAATCCATAT 60.015 38.462 7.00 0.00 38.05 1.78
5359 9317 5.300792 TGCTGATCGCCGTATATAATCCATA 59.699 40.000 7.00 0.00 38.05 2.74
5360 9318 4.099419 TGCTGATCGCCGTATATAATCCAT 59.901 41.667 7.00 0.00 38.05 3.41
5363 9321 4.862574 TGTTGCTGATCGCCGTATATAATC 59.137 41.667 7.00 0.00 38.05 1.75
5364 9322 4.816392 TGTTGCTGATCGCCGTATATAAT 58.184 39.130 7.00 0.00 38.05 1.28
5365 9323 4.245845 TGTTGCTGATCGCCGTATATAA 57.754 40.909 7.00 0.00 38.05 0.98
5366 9324 3.926821 TGTTGCTGATCGCCGTATATA 57.073 42.857 7.00 0.00 38.05 0.86
5367 9325 2.812358 TGTTGCTGATCGCCGTATAT 57.188 45.000 7.00 0.00 38.05 0.86
5368 9326 2.469826 CTTGTTGCTGATCGCCGTATA 58.530 47.619 7.00 0.00 38.05 1.47
5369 9327 1.290203 CTTGTTGCTGATCGCCGTAT 58.710 50.000 7.00 0.00 38.05 3.06
5370 9328 0.739462 CCTTGTTGCTGATCGCCGTA 60.739 55.000 7.00 0.00 38.05 4.02
5375 9937 5.801350 TTATTTCTCCTTGTTGCTGATCG 57.199 39.130 0.00 0.00 0.00 3.69
5395 9957 7.609918 TGTAACTTGCATTTCTGAGGCTAATTA 59.390 33.333 0.00 0.00 0.00 1.40
5403 9965 6.264832 TGTGTTTGTAACTTGCATTTCTGAG 58.735 36.000 0.00 0.00 0.00 3.35
5412 9974 5.687285 CCTTGAGATTGTGTTTGTAACTTGC 59.313 40.000 0.00 0.00 0.00 4.01
5413 9975 7.026631 TCCTTGAGATTGTGTTTGTAACTTG 57.973 36.000 0.00 0.00 0.00 3.16
5450 10012 9.603921 AAAATCATTTCCCAAGCAATAATACAG 57.396 29.630 0.00 0.00 0.00 2.74
5599 10163 7.963532 TGAATGTAGACTTTTAGGTCTTGACT 58.036 34.615 0.00 0.00 43.14 3.41
5677 10241 3.123621 GCAAAGAAGACATAGACACCACG 59.876 47.826 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.