Multiple sequence alignment - TraesCS3A01G518400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G518400 chr3A 100.000 3863 0 0 1 3863 735867040 735863178 0.000000e+00 7134.0
1 TraesCS3A01G518400 chr3A 88.779 303 25 4 3528 3824 687134087 687133788 2.840000e-96 363.0
2 TraesCS3A01G518400 chr3A 98.182 55 1 0 3454 3508 298753525 298753471 3.180000e-16 97.1
3 TraesCS3A01G518400 chr3B 94.172 1836 79 8 996 2810 812610349 812612177 0.000000e+00 2772.0
4 TraesCS3A01G518400 chr3B 90.271 1768 111 25 1079 2810 812583630 812585372 0.000000e+00 2255.0
5 TraesCS3A01G518400 chr3B 79.862 1599 215 64 727 2290 812602303 812603829 0.000000e+00 1070.0
6 TraesCS3A01G518400 chr3B 95.824 455 14 5 2823 3274 812612163 812612615 0.000000e+00 730.0
7 TraesCS3A01G518400 chr3B 91.611 298 17 6 2823 3112 812585358 812585655 4.650000e-109 405.0
8 TraesCS3A01G518400 chr3B 85.401 411 24 14 687 1083 812582909 812583297 1.010000e-105 394.0
9 TraesCS3A01G518400 chr3B 96.667 120 2 1 204 323 812582457 812582574 8.470000e-47 198.0
10 TraesCS3A01G518400 chr3B 92.500 120 7 1 204 323 812604466 812604583 1.850000e-38 171.0
11 TraesCS3A01G518400 chr3B 94.737 57 1 2 582 637 812609609 812609664 1.910000e-13 87.9
12 TraesCS3A01G518400 chr3B 97.872 47 1 0 645 691 812610144 812610190 8.900000e-12 82.4
13 TraesCS3A01G518400 chr3B 93.750 48 2 1 645 691 812582805 812582852 1.930000e-08 71.3
14 TraesCS3A01G518400 chr4D 81.498 1616 190 54 690 2287 419568115 419566591 0.000000e+00 1227.0
15 TraesCS3A01G518400 chr4D 82.262 1229 135 44 690 1894 419687434 419686265 0.000000e+00 985.0
16 TraesCS3A01G518400 chr4D 94.167 120 7 0 1 120 166530553 166530434 2.370000e-42 183.0
17 TraesCS3A01G518400 chr4D 88.710 62 3 2 2672 2729 419566247 419566186 5.350000e-09 73.1
18 TraesCS3A01G518400 chr5B 80.452 1637 182 66 687 2287 683654997 683656531 0.000000e+00 1123.0
19 TraesCS3A01G518400 chr5B 95.050 606 19 4 3268 3863 48854878 48855482 0.000000e+00 942.0
20 TraesCS3A01G518400 chr5B 96.016 251 10 0 335 585 179924887 179924637 3.590000e-110 409.0
21 TraesCS3A01G518400 chr5B 93.182 264 18 0 319 582 377018979 377018716 4.680000e-104 388.0
22 TraesCS3A01G518400 chr5B 89.964 279 17 5 3556 3824 77922708 77922431 2.210000e-92 350.0
23 TraesCS3A01G518400 chr5B 98.182 55 1 0 3454 3508 48855186 48855240 3.180000e-16 97.1
24 TraesCS3A01G518400 chr5B 88.710 62 3 2 2672 2729 683656851 683656912 5.350000e-09 73.1
25 TraesCS3A01G518400 chr5B 88.710 62 3 2 2672 2729 683659126 683659187 5.350000e-09 73.1
26 TraesCS3A01G518400 chr2D 95.875 606 12 5 3268 3863 642412979 642412377 0.000000e+00 968.0
27 TraesCS3A01G518400 chr2D 100.000 55 0 0 3454 3508 642412670 642412616 6.830000e-18 102.0
28 TraesCS3A01G518400 chr3D 88.039 811 56 19 687 1484 604878744 604879526 0.000000e+00 922.0
29 TraesCS3A01G518400 chr3D 90.886 395 34 2 1633 2026 604879525 604879918 2.640000e-146 529.0
30 TraesCS3A01G518400 chr3D 89.153 378 31 3 2296 2672 604880037 604880405 2.720000e-126 462.0
31 TraesCS3A01G518400 chr3D 90.182 275 19 3 3557 3824 380962607 380962880 6.140000e-93 351.0
32 TraesCS3A01G518400 chr3D 91.026 78 4 2 253 330 604873888 604873962 6.830000e-18 102.0
33 TraesCS3A01G518400 chr5A 90.351 570 26 10 3270 3824 451133225 451133780 0.000000e+00 721.0
34 TraesCS3A01G518400 chr5A 94.007 267 16 0 319 585 235830816 235830550 4.650000e-109 405.0
35 TraesCS3A01G518400 chr5A 87.179 156 20 0 1046 1201 605249081 605249236 1.100000e-40 178.0
36 TraesCS3A01G518400 chr5A 94.643 112 5 1 9 120 476912362 476912472 5.130000e-39 172.0
37 TraesCS3A01G518400 chr2B 92.391 368 15 5 3268 3622 253708939 253708572 2.660000e-141 512.0
38 TraesCS3A01G518400 chr2B 92.937 269 19 0 316 584 135770187 135770455 3.620000e-105 392.0
39 TraesCS3A01G518400 chr2B 92.910 268 19 0 320 587 509155272 509155005 1.300000e-104 390.0
40 TraesCS3A01G518400 chr2B 92.565 269 20 0 319 587 509164806 509164538 1.680000e-103 387.0
41 TraesCS3A01G518400 chr2B 91.822 269 22 0 317 585 666724805 666724537 3.640000e-100 375.0
42 TraesCS3A01G518400 chr2B 90.476 126 8 4 1 123 691429881 691429757 3.090000e-36 163.0
43 TraesCS3A01G518400 chr6D 90.798 326 17 7 3506 3824 148162291 148162610 1.280000e-114 424.0
44 TraesCS3A01G518400 chr1B 93.182 264 18 0 319 582 555256563 555256826 4.680000e-104 388.0
45 TraesCS3A01G518400 chr1B 90.984 122 11 0 10 131 26072097 26072218 8.590000e-37 165.0
46 TraesCS3A01G518400 chr4B 92.565 269 20 0 319 587 483834024 483834292 1.680000e-103 387.0
47 TraesCS3A01G518400 chr4B 98.182 55 1 0 3454 3508 669670846 669670792 3.180000e-16 97.1
48 TraesCS3A01G518400 chr1D 90.236 297 13 7 3573 3863 493363495 493363209 1.310000e-99 374.0
49 TraesCS3A01G518400 chr1D 98.204 167 2 1 3342 3508 493363606 493363441 1.360000e-74 291.0
50 TraesCS3A01G518400 chr5D 89.855 276 18 3 3558 3824 26460706 26460432 2.860000e-91 346.0
51 TraesCS3A01G518400 chr5D 89.531 277 19 3 3557 3824 394989379 394989654 3.700000e-90 342.0
52 TraesCS3A01G518400 chr5D 97.479 119 3 0 1 119 125794501 125794383 1.820000e-48 204.0
53 TraesCS3A01G518400 chr5D 96.667 120 4 0 1 120 125799432 125799313 2.350000e-47 200.0
54 TraesCS3A01G518400 chr5D 92.562 121 8 1 1 120 48043399 48043279 5.130000e-39 172.0
55 TraesCS3A01G518400 chr7B 93.388 121 7 1 1 120 10195929 10195809 1.100000e-40 178.0
56 TraesCS3A01G518400 chr2A 94.643 112 5 1 9 120 3776749 3776639 5.130000e-39 172.0
57 TraesCS3A01G518400 chr2A 100.000 29 0 0 1350 1378 504272109 504272081 2.000000e-03 54.7
58 TraesCS3A01G518400 chr7D 83.616 177 29 0 1046 1222 89896751 89896927 2.390000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G518400 chr3A 735863178 735867040 3862 True 7134.000000 7134 100.000000 1 3863 1 chr3A.!!$R3 3862
1 TraesCS3A01G518400 chr3B 812609609 812612615 3006 False 918.075000 2772 95.651250 582 3274 4 chr3B.!!$F3 2692
2 TraesCS3A01G518400 chr3B 812582457 812585655 3198 False 664.660000 2255 91.540000 204 3112 5 chr3B.!!$F1 2908
3 TraesCS3A01G518400 chr3B 812602303 812604583 2280 False 620.500000 1070 86.181000 204 2290 2 chr3B.!!$F2 2086
4 TraesCS3A01G518400 chr4D 419686265 419687434 1169 True 985.000000 985 82.262000 690 1894 1 chr4D.!!$R2 1204
5 TraesCS3A01G518400 chr4D 419566186 419568115 1929 True 650.050000 1227 85.104000 690 2729 2 chr4D.!!$R3 2039
6 TraesCS3A01G518400 chr5B 48854878 48855482 604 False 519.550000 942 96.616000 3268 3863 2 chr5B.!!$F1 595
7 TraesCS3A01G518400 chr5B 683654997 683659187 4190 False 423.066667 1123 85.957333 687 2729 3 chr5B.!!$F2 2042
8 TraesCS3A01G518400 chr2D 642412377 642412979 602 True 535.000000 968 97.937500 3268 3863 2 chr2D.!!$R1 595
9 TraesCS3A01G518400 chr3D 604878744 604880405 1661 False 637.666667 922 89.359333 687 2672 3 chr3D.!!$F3 1985
10 TraesCS3A01G518400 chr5A 451133225 451133780 555 False 721.000000 721 90.351000 3270 3824 1 chr5A.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.032615 AACCCAAGTCCTTGCACCAA 60.033 50.000 1.40 0.00 39.16 3.67 F
838 1437 0.253044 TGCATGCACCTAGGAAGTCC 59.747 55.000 18.46 0.00 0.00 3.85 F
890 1491 0.459585 TAATTCGAGTGCACGAGGCC 60.460 55.000 12.01 0.00 43.04 5.19 F
1814 2803 1.003545 CAGCAATGAAGATAACGGCCG 60.004 52.381 26.86 26.86 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 2528 0.469331 TCTTGGTGACCTCGGTGAGT 60.469 55.000 2.11 0.0 0.00 3.41 R
2034 3029 2.152016 GAGGTTTTTGAACTCGGGGAG 58.848 52.381 0.00 0.0 35.52 4.30 R
2320 3360 3.495806 CCTGGGAATATGAGTGAGCCTTC 60.496 52.174 0.00 0.0 0.00 3.46 R
3794 7133 1.571215 GCGTTGAACACCCCCTAACG 61.571 60.000 0.00 0.0 44.77 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.644774 GAACGGGTCGATCTCTTCC 57.355 57.895 0.00 0.00 0.00 3.46
21 22 0.102663 GAACGGGTCGATCTCTTCCC 59.897 60.000 0.00 0.00 36.82 3.97
22 23 1.328430 AACGGGTCGATCTCTTCCCC 61.328 60.000 0.00 0.00 36.84 4.81
23 24 1.455959 CGGGTCGATCTCTTCCCCT 60.456 63.158 0.00 0.00 36.84 4.79
24 25 1.457009 CGGGTCGATCTCTTCCCCTC 61.457 65.000 0.00 0.00 36.84 4.30
25 26 0.105913 GGGTCGATCTCTTCCCCTCT 60.106 60.000 0.00 0.00 34.32 3.69
26 27 1.324383 GGTCGATCTCTTCCCCTCTC 58.676 60.000 0.00 0.00 0.00 3.20
27 28 0.948678 GTCGATCTCTTCCCCTCTCG 59.051 60.000 0.00 0.00 0.00 4.04
28 29 0.837940 TCGATCTCTTCCCCTCTCGA 59.162 55.000 0.00 0.00 33.23 4.04
29 30 1.422024 TCGATCTCTTCCCCTCTCGAT 59.578 52.381 0.00 0.00 30.94 3.59
30 31 1.810151 CGATCTCTTCCCCTCTCGATC 59.190 57.143 0.00 0.00 0.00 3.69
31 32 1.810151 GATCTCTTCCCCTCTCGATCG 59.190 57.143 9.36 9.36 0.00 3.69
32 33 0.837940 TCTCTTCCCCTCTCGATCGA 59.162 55.000 18.32 18.32 0.00 3.59
33 34 1.422024 TCTCTTCCCCTCTCGATCGAT 59.578 52.381 19.78 0.00 0.00 3.59
34 35 1.810151 CTCTTCCCCTCTCGATCGATC 59.190 57.143 19.78 15.68 0.00 3.69
35 36 1.422024 TCTTCCCCTCTCGATCGATCT 59.578 52.381 19.78 0.00 0.00 2.75
36 37 1.810151 CTTCCCCTCTCGATCGATCTC 59.190 57.143 19.78 0.00 0.00 2.75
37 38 1.060729 TCCCCTCTCGATCGATCTCT 58.939 55.000 19.78 0.00 0.00 3.10
38 39 1.002659 TCCCCTCTCGATCGATCTCTC 59.997 57.143 19.78 0.00 0.00 3.20
39 40 1.003118 CCCCTCTCGATCGATCTCTCT 59.997 57.143 19.78 0.00 0.00 3.10
40 41 2.346803 CCCTCTCGATCGATCTCTCTC 58.653 57.143 19.78 0.00 0.00 3.20
41 42 2.028112 CCCTCTCGATCGATCTCTCTCT 60.028 54.545 19.78 0.00 0.00 3.10
42 43 3.557054 CCCTCTCGATCGATCTCTCTCTT 60.557 52.174 19.78 0.00 0.00 2.85
43 44 3.433274 CCTCTCGATCGATCTCTCTCTTG 59.567 52.174 19.78 2.67 0.00 3.02
44 45 4.058124 CTCTCGATCGATCTCTCTCTTGT 58.942 47.826 19.78 0.00 0.00 3.16
45 46 5.203060 TCTCGATCGATCTCTCTCTTGTA 57.797 43.478 19.78 0.00 0.00 2.41
46 47 5.602628 TCTCGATCGATCTCTCTCTTGTAA 58.397 41.667 19.78 0.00 0.00 2.41
47 48 5.694458 TCTCGATCGATCTCTCTCTTGTAAG 59.306 44.000 19.78 0.74 0.00 2.34
48 49 4.212425 TCGATCGATCTCTCTCTTGTAAGC 59.788 45.833 22.43 0.00 0.00 3.09
49 50 4.612712 CGATCGATCTCTCTCTTGTAAGCC 60.613 50.000 22.43 0.00 0.00 4.35
50 51 3.621558 TCGATCTCTCTCTTGTAAGCCA 58.378 45.455 0.00 0.00 0.00 4.75
51 52 3.378742 TCGATCTCTCTCTTGTAAGCCAC 59.621 47.826 0.00 0.00 0.00 5.01
52 53 3.701241 GATCTCTCTCTTGTAAGCCACG 58.299 50.000 0.00 0.00 0.00 4.94
53 54 2.791655 TCTCTCTCTTGTAAGCCACGA 58.208 47.619 0.00 0.00 0.00 4.35
54 55 2.488545 TCTCTCTCTTGTAAGCCACGAC 59.511 50.000 0.00 0.00 0.00 4.34
55 56 2.229062 CTCTCTCTTGTAAGCCACGACA 59.771 50.000 0.00 0.00 0.00 4.35
56 57 2.826128 TCTCTCTTGTAAGCCACGACAT 59.174 45.455 0.00 0.00 0.00 3.06
57 58 2.926200 CTCTCTTGTAAGCCACGACATG 59.074 50.000 0.00 0.00 0.00 3.21
58 59 2.299013 TCTCTTGTAAGCCACGACATGT 59.701 45.455 0.00 0.00 0.00 3.21
59 60 3.067106 CTCTTGTAAGCCACGACATGTT 58.933 45.455 0.00 0.00 0.00 2.71
60 61 3.064207 TCTTGTAAGCCACGACATGTTC 58.936 45.455 0.00 0.00 0.00 3.18
61 62 2.831685 TGTAAGCCACGACATGTTCT 57.168 45.000 0.00 0.00 0.00 3.01
62 63 2.683968 TGTAAGCCACGACATGTTCTC 58.316 47.619 0.00 0.00 0.00 2.87
63 64 2.299013 TGTAAGCCACGACATGTTCTCT 59.701 45.455 0.00 0.00 0.00 3.10
64 65 3.508402 TGTAAGCCACGACATGTTCTCTA 59.492 43.478 0.00 0.00 0.00 2.43
65 66 3.895232 AAGCCACGACATGTTCTCTAT 57.105 42.857 0.00 0.00 0.00 1.98
66 67 5.358725 TGTAAGCCACGACATGTTCTCTATA 59.641 40.000 0.00 0.00 0.00 1.31
67 68 5.537300 AAGCCACGACATGTTCTCTATAT 57.463 39.130 0.00 0.00 0.00 0.86
68 69 6.650427 AAGCCACGACATGTTCTCTATATA 57.350 37.500 0.00 0.00 0.00 0.86
69 70 6.650427 AGCCACGACATGTTCTCTATATAA 57.350 37.500 0.00 0.00 0.00 0.98
70 71 7.233389 AGCCACGACATGTTCTCTATATAAT 57.767 36.000 0.00 0.00 0.00 1.28
71 72 8.349568 AGCCACGACATGTTCTCTATATAATA 57.650 34.615 0.00 0.00 0.00 0.98
72 73 8.244802 AGCCACGACATGTTCTCTATATAATAC 58.755 37.037 0.00 0.00 0.00 1.89
73 74 8.027189 GCCACGACATGTTCTCTATATAATACA 58.973 37.037 0.00 0.00 0.00 2.29
74 75 9.908152 CCACGACATGTTCTCTATATAATACAA 57.092 33.333 0.00 0.00 0.00 2.41
79 80 9.371136 ACATGTTCTCTATATAATACAATGCGG 57.629 33.333 0.00 0.00 0.00 5.69
80 81 7.827819 TGTTCTCTATATAATACAATGCGGC 57.172 36.000 0.00 0.00 0.00 6.53
81 82 6.816640 TGTTCTCTATATAATACAATGCGGCC 59.183 38.462 0.00 0.00 0.00 6.13
82 83 5.914033 TCTCTATATAATACAATGCGGCCC 58.086 41.667 0.00 0.00 0.00 5.80
83 84 5.423931 TCTCTATATAATACAATGCGGCCCA 59.576 40.000 0.00 0.00 0.00 5.36
84 85 5.670485 TCTATATAATACAATGCGGCCCAG 58.330 41.667 0.00 0.00 0.00 4.45
85 86 2.949177 ATAATACAATGCGGCCCAGA 57.051 45.000 0.00 0.00 0.00 3.86
86 87 1.961793 TAATACAATGCGGCCCAGAC 58.038 50.000 0.00 0.00 0.00 3.51
87 88 1.095228 AATACAATGCGGCCCAGACG 61.095 55.000 0.00 0.00 36.98 4.18
88 89 1.966901 ATACAATGCGGCCCAGACGA 61.967 55.000 0.00 0.00 35.20 4.20
89 90 2.173758 TACAATGCGGCCCAGACGAA 62.174 55.000 0.00 0.00 35.20 3.85
90 91 2.436646 AATGCGGCCCAGACGAAG 60.437 61.111 0.00 0.00 35.20 3.79
91 92 3.976701 AATGCGGCCCAGACGAAGG 62.977 63.158 0.00 0.00 35.20 3.46
99 100 0.172803 CCCAGACGAAGGGTTCTACG 59.827 60.000 0.00 0.00 41.61 3.51
100 101 0.458025 CCAGACGAAGGGTTCTACGC 60.458 60.000 0.00 0.00 0.00 4.42
101 102 0.526662 CAGACGAAGGGTTCTACGCT 59.473 55.000 0.00 0.00 43.70 5.07
106 107 2.768046 AAGGGTTCTACGCTTCCCA 58.232 52.632 3.61 0.00 46.59 4.37
107 108 1.061546 AAGGGTTCTACGCTTCCCAA 58.938 50.000 3.61 0.00 46.59 4.12
108 109 1.286248 AGGGTTCTACGCTTCCCAAT 58.714 50.000 0.00 0.00 38.28 3.16
109 110 1.633945 AGGGTTCTACGCTTCCCAATT 59.366 47.619 0.00 0.00 38.28 2.32
110 111 2.014857 GGGTTCTACGCTTCCCAATTC 58.985 52.381 0.00 0.00 39.68 2.17
111 112 2.617021 GGGTTCTACGCTTCCCAATTCA 60.617 50.000 0.00 0.00 39.68 2.57
112 113 3.279434 GGTTCTACGCTTCCCAATTCAT 58.721 45.455 0.00 0.00 0.00 2.57
113 114 3.312697 GGTTCTACGCTTCCCAATTCATC 59.687 47.826 0.00 0.00 0.00 2.92
114 115 4.192317 GTTCTACGCTTCCCAATTCATCT 58.808 43.478 0.00 0.00 0.00 2.90
115 116 4.060038 TCTACGCTTCCCAATTCATCTC 57.940 45.455 0.00 0.00 0.00 2.75
116 117 2.787473 ACGCTTCCCAATTCATCTCA 57.213 45.000 0.00 0.00 0.00 3.27
117 118 2.359900 ACGCTTCCCAATTCATCTCAC 58.640 47.619 0.00 0.00 0.00 3.51
118 119 2.290260 ACGCTTCCCAATTCATCTCACA 60.290 45.455 0.00 0.00 0.00 3.58
119 120 2.947652 CGCTTCCCAATTCATCTCACAT 59.052 45.455 0.00 0.00 0.00 3.21
120 121 4.129380 CGCTTCCCAATTCATCTCACATA 58.871 43.478 0.00 0.00 0.00 2.29
121 122 4.212847 CGCTTCCCAATTCATCTCACATAG 59.787 45.833 0.00 0.00 0.00 2.23
122 123 4.023365 GCTTCCCAATTCATCTCACATAGC 60.023 45.833 0.00 0.00 0.00 2.97
123 124 4.776435 TCCCAATTCATCTCACATAGCA 57.224 40.909 0.00 0.00 0.00 3.49
124 125 4.711399 TCCCAATTCATCTCACATAGCAG 58.289 43.478 0.00 0.00 0.00 4.24
125 126 4.164796 TCCCAATTCATCTCACATAGCAGT 59.835 41.667 0.00 0.00 0.00 4.40
126 127 4.514441 CCCAATTCATCTCACATAGCAGTC 59.486 45.833 0.00 0.00 0.00 3.51
127 128 5.121105 CCAATTCATCTCACATAGCAGTCA 58.879 41.667 0.00 0.00 0.00 3.41
128 129 5.763698 CCAATTCATCTCACATAGCAGTCAT 59.236 40.000 0.00 0.00 0.00 3.06
129 130 6.073167 CCAATTCATCTCACATAGCAGTCATC 60.073 42.308 0.00 0.00 0.00 2.92
130 131 5.866159 TTCATCTCACATAGCAGTCATCT 57.134 39.130 0.00 0.00 0.00 2.90
131 132 5.866159 TCATCTCACATAGCAGTCATCTT 57.134 39.130 0.00 0.00 0.00 2.40
132 133 5.840715 TCATCTCACATAGCAGTCATCTTC 58.159 41.667 0.00 0.00 0.00 2.87
133 134 5.597594 TCATCTCACATAGCAGTCATCTTCT 59.402 40.000 0.00 0.00 0.00 2.85
134 135 5.512753 TCTCACATAGCAGTCATCTTCTC 57.487 43.478 0.00 0.00 0.00 2.87
135 136 4.340666 TCTCACATAGCAGTCATCTTCTCC 59.659 45.833 0.00 0.00 0.00 3.71
136 137 4.285020 TCACATAGCAGTCATCTTCTCCT 58.715 43.478 0.00 0.00 0.00 3.69
137 138 4.713814 TCACATAGCAGTCATCTTCTCCTT 59.286 41.667 0.00 0.00 0.00 3.36
138 139 5.188555 TCACATAGCAGTCATCTTCTCCTTT 59.811 40.000 0.00 0.00 0.00 3.11
139 140 5.293814 CACATAGCAGTCATCTTCTCCTTTG 59.706 44.000 0.00 0.00 0.00 2.77
140 141 3.347077 AGCAGTCATCTTCTCCTTTGG 57.653 47.619 0.00 0.00 0.00 3.28
141 142 1.742268 GCAGTCATCTTCTCCTTTGGC 59.258 52.381 0.00 0.00 0.00 4.52
142 143 2.363683 CAGTCATCTTCTCCTTTGGCC 58.636 52.381 0.00 0.00 0.00 5.36
143 144 1.283321 AGTCATCTTCTCCTTTGGCCC 59.717 52.381 0.00 0.00 0.00 5.80
144 145 0.253044 TCATCTTCTCCTTTGGCCCG 59.747 55.000 0.00 0.00 0.00 6.13
145 146 0.253044 CATCTTCTCCTTTGGCCCGA 59.747 55.000 0.00 0.00 0.00 5.14
146 147 0.543749 ATCTTCTCCTTTGGCCCGAG 59.456 55.000 0.00 0.00 0.00 4.63
147 148 1.746991 CTTCTCCTTTGGCCCGAGC 60.747 63.158 0.00 0.00 38.76 5.03
148 149 2.469465 CTTCTCCTTTGGCCCGAGCA 62.469 60.000 0.00 0.00 42.56 4.26
149 150 2.034066 CTCCTTTGGCCCGAGCAA 59.966 61.111 0.00 0.00 42.56 3.91
150 151 2.282180 TCCTTTGGCCCGAGCAAC 60.282 61.111 0.00 0.00 42.56 4.17
151 152 3.373565 CCTTTGGCCCGAGCAACC 61.374 66.667 0.00 0.00 42.56 3.77
152 153 3.373565 CTTTGGCCCGAGCAACCC 61.374 66.667 0.00 0.00 42.56 4.11
153 154 4.211330 TTTGGCCCGAGCAACCCA 62.211 61.111 0.00 0.00 42.56 4.51
154 155 3.740495 TTTGGCCCGAGCAACCCAA 62.740 57.895 0.00 0.00 42.56 4.12
155 156 4.659172 TGGCCCGAGCAACCCAAG 62.659 66.667 0.00 0.00 42.56 3.61
156 157 4.660938 GGCCCGAGCAACCCAAGT 62.661 66.667 0.00 0.00 42.56 3.16
157 158 3.056328 GCCCGAGCAACCCAAGTC 61.056 66.667 0.00 0.00 39.53 3.01
158 159 2.359975 CCCGAGCAACCCAAGTCC 60.360 66.667 0.00 0.00 0.00 3.85
159 160 2.750350 CCGAGCAACCCAAGTCCT 59.250 61.111 0.00 0.00 0.00 3.85
160 161 1.073199 CCGAGCAACCCAAGTCCTT 59.927 57.895 0.00 0.00 0.00 3.36
161 162 1.237285 CCGAGCAACCCAAGTCCTTG 61.237 60.000 0.00 0.00 40.13 3.61
162 163 1.856265 CGAGCAACCCAAGTCCTTGC 61.856 60.000 1.40 0.00 40.55 4.01
163 164 0.823356 GAGCAACCCAAGTCCTTGCA 60.823 55.000 1.40 0.00 42.32 4.08
164 165 1.109323 AGCAACCCAAGTCCTTGCAC 61.109 55.000 1.40 0.00 42.32 4.57
165 166 2.041153 CAACCCAAGTCCTTGCACC 58.959 57.895 1.40 0.00 39.16 5.01
166 167 0.754957 CAACCCAAGTCCTTGCACCA 60.755 55.000 1.40 0.00 39.16 4.17
167 168 0.032615 AACCCAAGTCCTTGCACCAA 60.033 50.000 1.40 0.00 39.16 3.67
168 169 0.468029 ACCCAAGTCCTTGCACCAAG 60.468 55.000 1.40 0.00 40.75 3.61
169 170 1.662044 CCAAGTCCTTGCACCAAGC 59.338 57.895 1.40 0.00 39.85 4.01
251 252 2.052237 GTTGCGTGGAACTGTGCG 60.052 61.111 0.00 0.00 31.75 5.34
256 257 0.942410 GCGTGGAACTGTGCGAAGTA 60.942 55.000 0.00 0.00 31.75 2.24
274 275 2.061028 GTAACGGTTTCCAGGTACGTG 58.939 52.381 8.61 8.61 37.87 4.49
275 276 0.465287 AACGGTTTCCAGGTACGTGT 59.535 50.000 14.08 0.00 37.87 4.49
319 320 3.329743 CATGCTTTGCACTCGGATTAG 57.670 47.619 0.00 0.00 43.04 1.73
320 321 1.737838 TGCTTTGCACTCGGATTAGG 58.262 50.000 0.00 0.00 31.71 2.69
321 322 0.378610 GCTTTGCACTCGGATTAGGC 59.621 55.000 0.00 0.00 0.00 3.93
322 323 2.014068 GCTTTGCACTCGGATTAGGCT 61.014 52.381 0.00 0.00 0.00 4.58
323 324 2.741878 GCTTTGCACTCGGATTAGGCTA 60.742 50.000 0.00 0.00 0.00 3.93
324 325 2.890808 TTGCACTCGGATTAGGCTAG 57.109 50.000 0.00 0.00 0.00 3.42
325 326 1.776662 TGCACTCGGATTAGGCTAGT 58.223 50.000 0.00 0.00 0.00 2.57
326 327 1.681793 TGCACTCGGATTAGGCTAGTC 59.318 52.381 8.42 8.42 0.00 2.59
327 328 1.681793 GCACTCGGATTAGGCTAGTCA 59.318 52.381 17.44 0.00 0.00 3.41
328 329 2.297597 GCACTCGGATTAGGCTAGTCAT 59.702 50.000 17.44 0.00 0.00 3.06
329 330 3.506455 GCACTCGGATTAGGCTAGTCATA 59.494 47.826 17.44 5.17 0.00 2.15
330 331 4.380023 GCACTCGGATTAGGCTAGTCATAG 60.380 50.000 17.44 14.96 0.00 2.23
331 332 4.762765 CACTCGGATTAGGCTAGTCATAGT 59.237 45.833 17.44 15.50 0.00 2.12
332 333 4.762765 ACTCGGATTAGGCTAGTCATAGTG 59.237 45.833 17.44 11.26 0.00 2.74
333 334 4.079970 TCGGATTAGGCTAGTCATAGTGG 58.920 47.826 17.44 1.61 0.00 4.00
334 335 3.193691 CGGATTAGGCTAGTCATAGTGGG 59.806 52.174 17.44 0.00 0.00 4.61
335 336 4.417437 GGATTAGGCTAGTCATAGTGGGA 58.583 47.826 17.44 0.00 0.00 4.37
336 337 4.464597 GGATTAGGCTAGTCATAGTGGGAG 59.535 50.000 17.44 0.00 0.00 4.30
337 338 4.537945 TTAGGCTAGTCATAGTGGGAGT 57.462 45.455 0.00 0.00 0.00 3.85
338 339 5.658198 TTAGGCTAGTCATAGTGGGAGTA 57.342 43.478 0.00 0.00 0.00 2.59
339 340 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
340 341 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
341 342 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
342 343 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
343 344 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
344 345 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
345 346 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
346 347 5.269991 AGTCATAGTGGGAGTAACTTAGCA 58.730 41.667 0.00 0.00 0.00 3.49
347 348 5.720041 AGTCATAGTGGGAGTAACTTAGCAA 59.280 40.000 0.00 0.00 0.00 3.91
348 349 6.043411 GTCATAGTGGGAGTAACTTAGCAAG 58.957 44.000 0.00 0.00 0.00 4.01
349 350 5.720041 TCATAGTGGGAGTAACTTAGCAAGT 59.280 40.000 0.00 0.00 45.46 3.16
350 351 6.893554 TCATAGTGGGAGTAACTTAGCAAGTA 59.106 38.462 2.60 0.00 41.91 2.24
351 352 7.398047 TCATAGTGGGAGTAACTTAGCAAGTAA 59.602 37.037 2.60 0.00 41.91 2.24
352 353 5.791666 AGTGGGAGTAACTTAGCAAGTAAC 58.208 41.667 2.60 0.00 41.91 2.50
353 354 5.306160 AGTGGGAGTAACTTAGCAAGTAACA 59.694 40.000 2.60 0.00 41.91 2.41
354 355 6.013639 AGTGGGAGTAACTTAGCAAGTAACAT 60.014 38.462 2.60 0.00 41.91 2.71
355 356 7.179694 AGTGGGAGTAACTTAGCAAGTAACATA 59.820 37.037 2.60 0.00 41.91 2.29
356 357 7.491696 GTGGGAGTAACTTAGCAAGTAACATAG 59.508 40.741 2.60 0.00 41.91 2.23
357 358 6.479331 GGGAGTAACTTAGCAAGTAACATAGC 59.521 42.308 2.60 0.00 41.91 2.97
358 359 7.039882 GGAGTAACTTAGCAAGTAACATAGCA 58.960 38.462 2.60 0.00 41.91 3.49
359 360 7.010275 GGAGTAACTTAGCAAGTAACATAGCAC 59.990 40.741 2.60 0.00 41.91 4.40
360 361 7.383687 AGTAACTTAGCAAGTAACATAGCACA 58.616 34.615 2.60 0.00 41.91 4.57
361 362 6.481954 AACTTAGCAAGTAACATAGCACAC 57.518 37.500 2.60 0.00 41.91 3.82
362 363 5.794894 ACTTAGCAAGTAACATAGCACACT 58.205 37.500 0.44 0.00 40.69 3.55
363 364 5.869888 ACTTAGCAAGTAACATAGCACACTC 59.130 40.000 0.44 0.00 40.69 3.51
364 365 3.600388 AGCAAGTAACATAGCACACTCC 58.400 45.455 0.00 0.00 0.00 3.85
365 366 3.007940 AGCAAGTAACATAGCACACTCCA 59.992 43.478 0.00 0.00 0.00 3.86
366 367 3.751175 GCAAGTAACATAGCACACTCCAA 59.249 43.478 0.00 0.00 0.00 3.53
367 368 4.142816 GCAAGTAACATAGCACACTCCAAG 60.143 45.833 0.00 0.00 0.00 3.61
368 369 5.237815 CAAGTAACATAGCACACTCCAAGA 58.762 41.667 0.00 0.00 0.00 3.02
369 370 5.483685 AGTAACATAGCACACTCCAAGAA 57.516 39.130 0.00 0.00 0.00 2.52
370 371 5.865085 AGTAACATAGCACACTCCAAGAAA 58.135 37.500 0.00 0.00 0.00 2.52
371 372 6.476378 AGTAACATAGCACACTCCAAGAAAT 58.524 36.000 0.00 0.00 0.00 2.17
372 373 6.942576 AGTAACATAGCACACTCCAAGAAATT 59.057 34.615 0.00 0.00 0.00 1.82
373 374 6.655078 AACATAGCACACTCCAAGAAATTT 57.345 33.333 0.00 0.00 0.00 1.82
374 375 6.655078 ACATAGCACACTCCAAGAAATTTT 57.345 33.333 0.00 0.00 0.00 1.82
375 376 7.054491 ACATAGCACACTCCAAGAAATTTTT 57.946 32.000 0.00 0.00 0.00 1.94
376 377 6.925165 ACATAGCACACTCCAAGAAATTTTTG 59.075 34.615 0.00 0.00 0.00 2.44
377 378 4.122046 AGCACACTCCAAGAAATTTTTGC 58.878 39.130 0.00 0.00 0.00 3.68
378 379 4.122046 GCACACTCCAAGAAATTTTTGCT 58.878 39.130 0.00 0.00 0.00 3.91
379 380 4.571984 GCACACTCCAAGAAATTTTTGCTT 59.428 37.500 0.00 0.00 0.00 3.91
380 381 5.752955 GCACACTCCAAGAAATTTTTGCTTA 59.247 36.000 0.00 0.00 0.00 3.09
381 382 6.424812 GCACACTCCAAGAAATTTTTGCTTAT 59.575 34.615 0.00 0.00 0.00 1.73
382 383 7.569957 GCACACTCCAAGAAATTTTTGCTTATG 60.570 37.037 0.00 0.00 0.00 1.90
383 384 7.439056 CACACTCCAAGAAATTTTTGCTTATGT 59.561 33.333 0.00 0.37 0.00 2.29
384 385 7.439056 ACACTCCAAGAAATTTTTGCTTATGTG 59.561 33.333 0.00 4.56 0.00 3.21
385 386 6.930722 ACTCCAAGAAATTTTTGCTTATGTGG 59.069 34.615 0.00 0.00 0.00 4.17
386 387 5.700373 TCCAAGAAATTTTTGCTTATGTGGC 59.300 36.000 0.00 0.00 0.00 5.01
387 388 5.469421 CCAAGAAATTTTTGCTTATGTGGCA 59.531 36.000 0.00 0.00 37.97 4.92
388 389 6.017275 CCAAGAAATTTTTGCTTATGTGGCAA 60.017 34.615 0.00 0.00 46.12 4.52
398 399 6.435430 TGCTTATGTGGCAAGTAGTTAATG 57.565 37.500 0.00 0.00 36.71 1.90
399 400 6.176896 TGCTTATGTGGCAAGTAGTTAATGA 58.823 36.000 0.00 0.00 36.71 2.57
400 401 6.316140 TGCTTATGTGGCAAGTAGTTAATGAG 59.684 38.462 0.00 0.00 36.71 2.90
401 402 6.538742 GCTTATGTGGCAAGTAGTTAATGAGA 59.461 38.462 0.00 0.00 0.00 3.27
402 403 7.254590 GCTTATGTGGCAAGTAGTTAATGAGAG 60.255 40.741 0.00 0.00 0.00 3.20
403 404 4.832248 TGTGGCAAGTAGTTAATGAGAGG 58.168 43.478 0.00 0.00 0.00 3.69
404 405 4.286032 TGTGGCAAGTAGTTAATGAGAGGT 59.714 41.667 0.00 0.00 0.00 3.85
405 406 4.631813 GTGGCAAGTAGTTAATGAGAGGTG 59.368 45.833 0.00 0.00 0.00 4.00
406 407 4.192317 GGCAAGTAGTTAATGAGAGGTGG 58.808 47.826 0.00 0.00 0.00 4.61
407 408 4.323562 GGCAAGTAGTTAATGAGAGGTGGT 60.324 45.833 0.00 0.00 0.00 4.16
408 409 5.105064 GGCAAGTAGTTAATGAGAGGTGGTA 60.105 44.000 0.00 0.00 0.00 3.25
409 410 6.403878 GCAAGTAGTTAATGAGAGGTGGTAA 58.596 40.000 0.00 0.00 0.00 2.85
410 411 6.313164 GCAAGTAGTTAATGAGAGGTGGTAAC 59.687 42.308 0.00 0.00 0.00 2.50
439 440 8.928270 ATATGTTACTATAACATAGCGCTTCC 57.072 34.615 18.68 0.00 43.73 3.46
440 441 5.535333 TGTTACTATAACATAGCGCTTCCC 58.465 41.667 18.68 0.00 0.00 3.97
441 442 5.069383 TGTTACTATAACATAGCGCTTCCCA 59.931 40.000 18.68 0.00 0.00 4.37
442 443 4.682778 ACTATAACATAGCGCTTCCCAA 57.317 40.909 18.68 0.00 0.00 4.12
443 444 4.632153 ACTATAACATAGCGCTTCCCAAG 58.368 43.478 18.68 7.77 0.00 3.61
444 445 3.838244 ATAACATAGCGCTTCCCAAGA 57.162 42.857 18.68 0.00 0.00 3.02
445 446 2.717639 AACATAGCGCTTCCCAAGAT 57.282 45.000 18.68 0.00 0.00 2.40
446 447 3.838244 AACATAGCGCTTCCCAAGATA 57.162 42.857 18.68 0.00 0.00 1.98
447 448 3.393089 ACATAGCGCTTCCCAAGATAG 57.607 47.619 18.68 0.00 0.00 2.08
448 449 2.965831 ACATAGCGCTTCCCAAGATAGA 59.034 45.455 18.68 0.00 0.00 1.98
449 450 3.388024 ACATAGCGCTTCCCAAGATAGAA 59.612 43.478 18.68 0.00 0.00 2.10
450 451 4.040952 ACATAGCGCTTCCCAAGATAGAAT 59.959 41.667 18.68 0.00 0.00 2.40
451 452 2.843701 AGCGCTTCCCAAGATAGAATG 58.156 47.619 2.64 0.00 0.00 2.67
452 453 2.435805 AGCGCTTCCCAAGATAGAATGA 59.564 45.455 2.64 0.00 0.00 2.57
453 454 2.805099 GCGCTTCCCAAGATAGAATGAG 59.195 50.000 0.00 0.00 0.00 2.90
454 455 3.742640 GCGCTTCCCAAGATAGAATGAGT 60.743 47.826 0.00 0.00 0.00 3.41
455 456 4.054671 CGCTTCCCAAGATAGAATGAGTC 58.945 47.826 0.00 0.00 0.00 3.36
456 457 4.202202 CGCTTCCCAAGATAGAATGAGTCT 60.202 45.833 0.00 0.00 40.71 3.24
457 458 5.010112 CGCTTCCCAAGATAGAATGAGTCTA 59.990 44.000 0.00 0.00 43.14 2.59
458 459 6.220201 GCTTCCCAAGATAGAATGAGTCTAC 58.780 44.000 0.00 0.00 41.75 2.59
459 460 6.183360 GCTTCCCAAGATAGAATGAGTCTACA 60.183 42.308 0.00 0.00 41.75 2.74
460 461 7.633772 GCTTCCCAAGATAGAATGAGTCTACAA 60.634 40.741 0.00 0.00 41.75 2.41
461 462 7.353414 TCCCAAGATAGAATGAGTCTACAAG 57.647 40.000 0.00 0.00 41.75 3.16
462 463 5.988561 CCCAAGATAGAATGAGTCTACAAGC 59.011 44.000 0.00 0.00 41.75 4.01
463 464 6.183360 CCCAAGATAGAATGAGTCTACAAGCT 60.183 42.308 0.00 0.00 41.75 3.74
464 465 7.014711 CCCAAGATAGAATGAGTCTACAAGCTA 59.985 40.741 0.00 0.00 41.75 3.32
465 466 8.417106 CCAAGATAGAATGAGTCTACAAGCTAA 58.583 37.037 0.00 0.00 41.75 3.09
466 467 9.979578 CAAGATAGAATGAGTCTACAAGCTAAT 57.020 33.333 0.00 0.00 41.75 1.73
476 477 9.162764 TGAGTCTACAAGCTAATAAATGAAACC 57.837 33.333 0.00 0.00 0.00 3.27
477 478 9.162764 GAGTCTACAAGCTAATAAATGAAACCA 57.837 33.333 0.00 0.00 0.00 3.67
478 479 9.686683 AGTCTACAAGCTAATAAATGAAACCAT 57.313 29.630 0.00 0.00 0.00 3.55
507 508 8.341892 TGACACTAATACCATGTTATTTTGCA 57.658 30.769 0.42 0.00 0.00 4.08
508 509 8.240682 TGACACTAATACCATGTTATTTTGCAC 58.759 33.333 0.42 0.23 0.00 4.57
509 510 8.348285 ACACTAATACCATGTTATTTTGCACT 57.652 30.769 0.42 0.00 0.00 4.40
510 511 9.456147 ACACTAATACCATGTTATTTTGCACTA 57.544 29.630 0.42 0.00 0.00 2.74
516 517 7.701539 ACCATGTTATTTTGCACTATGAAGA 57.298 32.000 0.00 0.00 0.00 2.87
517 518 8.297470 ACCATGTTATTTTGCACTATGAAGAT 57.703 30.769 0.00 0.00 0.00 2.40
518 519 9.407380 ACCATGTTATTTTGCACTATGAAGATA 57.593 29.630 0.00 0.00 0.00 1.98
519 520 9.888878 CCATGTTATTTTGCACTATGAAGATAG 57.111 33.333 0.00 0.00 38.06 2.08
530 531 9.409918 TGCACTATGAAGATAGTAACTTAGACT 57.590 33.333 0.00 0.00 42.55 3.24
537 538 9.955102 TGAAGATAGTAACTTAGACTAGTGTCA 57.045 33.333 0.00 0.00 45.20 3.58
540 541 8.842280 AGATAGTAACTTAGACTAGTGTCATGC 58.158 37.037 0.00 0.00 45.20 4.06
541 542 6.835819 AGTAACTTAGACTAGTGTCATGCA 57.164 37.500 0.00 0.00 45.20 3.96
542 543 7.411486 AGTAACTTAGACTAGTGTCATGCAT 57.589 36.000 0.00 0.00 45.20 3.96
543 544 8.521170 AGTAACTTAGACTAGTGTCATGCATA 57.479 34.615 0.00 0.00 45.20 3.14
544 545 9.137459 AGTAACTTAGACTAGTGTCATGCATAT 57.863 33.333 0.00 0.00 45.20 1.78
545 546 9.186323 GTAACTTAGACTAGTGTCATGCATATG 57.814 37.037 0.00 0.00 45.20 1.78
546 547 7.588497 ACTTAGACTAGTGTCATGCATATGA 57.412 36.000 6.97 0.00 45.20 2.15
565 566 9.843334 GCATATGACACTAGTATAAGTTACTCC 57.157 37.037 6.97 0.00 0.00 3.85
567 568 7.836479 ATGACACTAGTATAAGTTACTCCCC 57.164 40.000 0.00 0.00 0.00 4.81
568 569 6.734532 TGACACTAGTATAAGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
569 570 6.604795 TGACACTAGTATAAGTTACTCCCCAC 59.395 42.308 0.00 0.00 0.00 4.61
570 571 6.739664 ACACTAGTATAAGTTACTCCCCACT 58.260 40.000 0.00 0.00 0.00 4.00
571 572 7.876371 ACACTAGTATAAGTTACTCCCCACTA 58.124 38.462 0.00 0.00 0.00 2.74
572 573 8.509441 ACACTAGTATAAGTTACTCCCCACTAT 58.491 37.037 0.00 0.00 0.00 2.12
573 574 8.794553 CACTAGTATAAGTTACTCCCCACTATG 58.205 40.741 0.00 0.00 0.00 2.23
574 575 8.730948 ACTAGTATAAGTTACTCCCCACTATGA 58.269 37.037 0.00 0.00 0.00 2.15
575 576 7.836479 AGTATAAGTTACTCCCCACTATGAC 57.164 40.000 0.00 0.00 0.00 3.06
576 577 6.781507 AGTATAAGTTACTCCCCACTATGACC 59.218 42.308 0.00 0.00 0.00 4.02
577 578 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
578 579 3.798515 AGTTACTCCCCACTATGACCAA 58.201 45.455 0.00 0.00 0.00 3.67
579 580 3.518303 AGTTACTCCCCACTATGACCAAC 59.482 47.826 0.00 0.00 0.00 3.77
580 581 1.286248 ACTCCCCACTATGACCAACC 58.714 55.000 0.00 0.00 0.00 3.77
624 625 2.990740 AAGGGGCAATACTTCCAACA 57.009 45.000 0.00 0.00 0.00 3.33
629 630 3.561313 GGGGCAATACTTCCAACAGAGAA 60.561 47.826 0.00 0.00 0.00 2.87
633 634 6.152379 GGCAATACTTCCAACAGAGAAAAAG 58.848 40.000 0.00 0.00 0.00 2.27
635 636 6.239036 GCAATACTTCCAACAGAGAAAAAGGT 60.239 38.462 0.00 0.00 0.00 3.50
636 637 7.040686 GCAATACTTCCAACAGAGAAAAAGGTA 60.041 37.037 0.00 0.00 0.00 3.08
637 638 7.981102 ATACTTCCAACAGAGAAAAAGGTAC 57.019 36.000 0.00 0.00 0.00 3.34
674 1148 8.943002 AGTTCTTTCTTCGTCTTTCTTAAACAA 58.057 29.630 0.00 0.00 0.00 2.83
708 1303 1.651737 TCGTCTTTCCCCATTCCTCA 58.348 50.000 0.00 0.00 0.00 3.86
714 1309 2.826674 TTCCCCATTCCTCATCCAAC 57.173 50.000 0.00 0.00 0.00 3.77
838 1437 0.253044 TGCATGCACCTAGGAAGTCC 59.747 55.000 18.46 0.00 0.00 3.85
890 1491 0.459585 TAATTCGAGTGCACGAGGCC 60.460 55.000 12.01 0.00 43.04 5.19
986 1595 3.828875 AGCCATCTACTTCTAAGCACC 57.171 47.619 0.00 0.00 0.00 5.01
994 1603 6.092955 TCTACTTCTAAGCACCGAGAAAAA 57.907 37.500 0.00 0.00 31.46 1.94
1035 1657 4.374702 CTGAAGTGTGCACGCGGC 62.375 66.667 23.74 19.21 45.13 6.53
1348 2316 4.329545 TGCACGAAGACCCTGGCC 62.330 66.667 0.00 0.00 0.00 5.36
1382 2356 1.706866 TGGCTATGGCTATGGCAGATT 59.293 47.619 19.66 0.00 42.06 2.40
1543 2520 1.949525 ACATGCGACTGAAAAACTGCT 59.050 42.857 0.00 0.00 0.00 4.24
1551 2528 4.447724 CGACTGAAAAACTGCTGCTACTTA 59.552 41.667 0.00 0.00 0.00 2.24
1562 2539 2.093106 CTGCTACTTACTCACCGAGGT 58.907 52.381 0.00 0.00 33.35 3.85
1568 2545 1.616865 CTTACTCACCGAGGTCACCAA 59.383 52.381 0.00 0.00 33.35 3.67
1814 2803 1.003545 CAGCAATGAAGATAACGGCCG 60.004 52.381 26.86 26.86 0.00 6.13
2034 3029 2.079925 GAGGTGATGCTGGTCTGTTTC 58.920 52.381 0.00 0.00 0.00 2.78
2166 3161 3.594775 TGCGCTGTTGCAAGGTGG 61.595 61.111 9.73 0.00 43.02 4.61
2256 3266 3.121929 TCCCAACAGCTCTTAGATCCT 57.878 47.619 0.00 0.00 0.00 3.24
2409 3449 7.728847 TCATATACCAGAAAAATGACGATGG 57.271 36.000 0.00 0.00 0.00 3.51
2496 3536 4.609295 CGAGATCACTAAAGTCGATTAGCG 59.391 45.833 5.83 0.00 36.54 4.26
2526 3585 7.148069 CCGTATCCATATGTCAGCTTGTCTATA 60.148 40.741 1.24 0.00 0.00 1.31
2580 3648 3.754323 TGTATCGCAAGGTTACCTTTTGG 59.246 43.478 14.80 4.74 41.69 3.28
2799 6112 2.669300 TTAAGGCCGTGCGTTATGTA 57.331 45.000 0.00 0.00 38.40 2.29
2800 6113 2.212869 TAAGGCCGTGCGTTATGTAG 57.787 50.000 0.00 0.00 37.76 2.74
2801 6114 0.533491 AAGGCCGTGCGTTATGTAGA 59.467 50.000 0.00 0.00 34.83 2.59
2802 6115 0.750850 AGGCCGTGCGTTATGTAGAT 59.249 50.000 0.00 0.00 0.00 1.98
2803 6116 1.138266 AGGCCGTGCGTTATGTAGATT 59.862 47.619 0.00 0.00 0.00 2.40
2804 6117 2.363038 AGGCCGTGCGTTATGTAGATTA 59.637 45.455 0.00 0.00 0.00 1.75
2805 6118 3.006537 AGGCCGTGCGTTATGTAGATTAT 59.993 43.478 0.00 0.00 0.00 1.28
2806 6119 3.122948 GGCCGTGCGTTATGTAGATTATG 59.877 47.826 0.00 0.00 0.00 1.90
2807 6120 3.739300 GCCGTGCGTTATGTAGATTATGT 59.261 43.478 0.00 0.00 0.00 2.29
2808 6121 4.210537 GCCGTGCGTTATGTAGATTATGTT 59.789 41.667 0.00 0.00 0.00 2.71
2809 6122 5.611844 GCCGTGCGTTATGTAGATTATGTTC 60.612 44.000 0.00 0.00 0.00 3.18
2810 6123 5.107607 CCGTGCGTTATGTAGATTATGTTCC 60.108 44.000 0.00 0.00 0.00 3.62
2811 6124 5.107607 CGTGCGTTATGTAGATTATGTTCCC 60.108 44.000 0.00 0.00 0.00 3.97
2813 6126 4.143179 GCGTTATGTAGATTATGTTCCCGC 60.143 45.833 0.00 0.00 0.00 6.13
2815 6128 5.464057 CGTTATGTAGATTATGTTCCCGCAA 59.536 40.000 0.00 0.00 0.00 4.85
2816 6129 6.018588 CGTTATGTAGATTATGTTCCCGCAAA 60.019 38.462 0.00 0.00 0.00 3.68
2817 6130 7.466185 CGTTATGTAGATTATGTTCCCGCAAAA 60.466 37.037 0.00 0.00 0.00 2.44
2818 6131 6.767524 ATGTAGATTATGTTCCCGCAAAAA 57.232 33.333 0.00 0.00 0.00 1.94
2895 6209 8.648557 TCATTAGGAAGATTATGTTCTTGACG 57.351 34.615 2.20 0.00 36.10 4.35
2957 6271 5.514274 TTTTCTCTGGGTGTTTGAATGAC 57.486 39.130 0.00 0.00 0.00 3.06
3003 6321 3.214328 GGACACACACAACTTTCCTGAT 58.786 45.455 0.00 0.00 0.00 2.90
3066 6386 7.290014 ACATTAACTGTTTCCCATTTTCTCCTT 59.710 33.333 0.00 0.00 32.90 3.36
3114 6435 6.144402 ACACGTCCTTTGTACAATAGTTAACG 59.856 38.462 9.56 17.19 0.00 3.18
3192 6513 3.670625 TGAGTTATGGGGAAGAAACACG 58.329 45.455 0.00 0.00 0.00 4.49
3198 6519 2.294074 TGGGGAAGAAACACGAAGTTG 58.706 47.619 0.00 0.00 41.61 3.16
3340 6662 3.140623 GCAAAGAAAACACCATGGCAAT 58.859 40.909 13.04 0.00 0.00 3.56
3596 6926 6.887626 AATTTTTGCCATGCTCAAAGATTT 57.112 29.167 15.37 8.17 35.84 2.17
3598 6928 6.696441 TTTTTGCCATGCTCAAAGATTTTT 57.304 29.167 10.05 0.00 35.21 1.94
3654 6984 9.520204 AGACAGATAAAAACAGTCAAACATTTG 57.480 29.630 0.00 0.00 39.48 2.32
3794 7133 1.968540 GTGTGTCTCAAGCAGGGGC 60.969 63.158 0.00 0.00 41.61 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.102663 GGGAAGAGATCGACCCGTTC 59.897 60.000 0.00 0.00 32.73 3.95
3 4 1.328430 GGGGAAGAGATCGACCCGTT 61.328 60.000 11.33 0.00 42.90 4.44
4 5 1.757340 GGGGAAGAGATCGACCCGT 60.757 63.158 11.33 0.00 42.90 5.28
5 6 1.455959 AGGGGAAGAGATCGACCCG 60.456 63.158 11.33 0.00 46.10 5.28
6 7 0.105913 AGAGGGGAAGAGATCGACCC 60.106 60.000 9.83 9.83 41.80 4.46
7 8 1.324383 GAGAGGGGAAGAGATCGACC 58.676 60.000 0.00 0.00 0.00 4.79
8 9 0.948678 CGAGAGGGGAAGAGATCGAC 59.051 60.000 0.00 0.00 32.13 4.20
9 10 0.837940 TCGAGAGGGGAAGAGATCGA 59.162 55.000 0.00 0.00 36.90 3.59
10 11 1.810151 GATCGAGAGGGGAAGAGATCG 59.190 57.143 0.00 0.00 0.00 3.69
11 12 1.810151 CGATCGAGAGGGGAAGAGATC 59.190 57.143 10.26 0.00 33.28 2.75
12 13 1.422024 TCGATCGAGAGGGGAAGAGAT 59.578 52.381 15.15 0.00 0.00 2.75
13 14 0.837940 TCGATCGAGAGGGGAAGAGA 59.162 55.000 15.15 0.00 0.00 3.10
14 15 1.810151 GATCGATCGAGAGGGGAAGAG 59.190 57.143 23.84 0.00 0.00 2.85
15 16 1.422024 AGATCGATCGAGAGGGGAAGA 59.578 52.381 23.84 0.00 0.00 2.87
16 17 1.810151 GAGATCGATCGAGAGGGGAAG 59.190 57.143 23.84 0.00 0.00 3.46
17 18 1.422024 AGAGATCGATCGAGAGGGGAA 59.578 52.381 23.84 0.00 0.00 3.97
18 19 1.002659 GAGAGATCGATCGAGAGGGGA 59.997 57.143 23.84 0.00 0.00 4.81
19 20 1.003118 AGAGAGATCGATCGAGAGGGG 59.997 57.143 23.84 0.00 0.00 4.79
20 21 2.028112 AGAGAGAGATCGATCGAGAGGG 60.028 54.545 23.84 0.00 0.00 4.30
21 22 3.319137 AGAGAGAGATCGATCGAGAGG 57.681 52.381 23.84 0.00 0.00 3.69
22 23 4.058124 ACAAGAGAGAGATCGATCGAGAG 58.942 47.826 23.84 8.14 0.00 3.20
23 24 4.066646 ACAAGAGAGAGATCGATCGAGA 57.933 45.455 23.84 0.68 0.00 4.04
24 25 5.614668 GCTTACAAGAGAGAGATCGATCGAG 60.615 48.000 23.84 7.97 0.00 4.04
25 26 4.212425 GCTTACAAGAGAGAGATCGATCGA 59.788 45.833 21.86 21.86 0.00 3.59
26 27 4.463209 GCTTACAAGAGAGAGATCGATCG 58.537 47.826 19.33 9.36 0.00 3.69
27 28 4.277174 TGGCTTACAAGAGAGAGATCGATC 59.723 45.833 17.91 17.91 0.00 3.69
28 29 4.037446 GTGGCTTACAAGAGAGAGATCGAT 59.963 45.833 0.00 0.00 0.00 3.59
29 30 3.378742 GTGGCTTACAAGAGAGAGATCGA 59.621 47.826 0.00 0.00 0.00 3.59
30 31 3.701241 GTGGCTTACAAGAGAGAGATCG 58.299 50.000 0.00 0.00 0.00 3.69
31 32 3.378742 TCGTGGCTTACAAGAGAGAGATC 59.621 47.826 0.00 0.00 32.51 2.75
32 33 3.129638 GTCGTGGCTTACAAGAGAGAGAT 59.870 47.826 0.00 0.00 38.26 2.75
33 34 2.488545 GTCGTGGCTTACAAGAGAGAGA 59.511 50.000 0.00 0.00 38.26 3.10
34 35 2.229062 TGTCGTGGCTTACAAGAGAGAG 59.771 50.000 0.00 0.00 38.26 3.20
35 36 2.235891 TGTCGTGGCTTACAAGAGAGA 58.764 47.619 0.00 0.00 38.26 3.10
36 37 2.724977 TGTCGTGGCTTACAAGAGAG 57.275 50.000 0.00 0.00 38.26 3.20
37 38 2.299013 ACATGTCGTGGCTTACAAGAGA 59.701 45.455 0.00 0.00 38.26 3.10
38 39 2.688507 ACATGTCGTGGCTTACAAGAG 58.311 47.619 0.00 0.00 38.26 2.85
39 40 2.831685 ACATGTCGTGGCTTACAAGA 57.168 45.000 0.00 0.00 35.16 3.02
40 41 3.067106 AGAACATGTCGTGGCTTACAAG 58.933 45.455 0.00 0.00 0.00 3.16
41 42 3.064207 GAGAACATGTCGTGGCTTACAA 58.936 45.455 0.00 0.00 0.00 2.41
42 43 2.299013 AGAGAACATGTCGTGGCTTACA 59.701 45.455 0.00 0.00 0.00 2.41
43 44 2.960819 AGAGAACATGTCGTGGCTTAC 58.039 47.619 0.00 0.00 0.00 2.34
44 45 6.650427 ATATAGAGAACATGTCGTGGCTTA 57.350 37.500 0.00 0.00 0.00 3.09
45 46 3.895232 ATAGAGAACATGTCGTGGCTT 57.105 42.857 0.00 0.00 0.00 4.35
46 47 6.650427 TTATATAGAGAACATGTCGTGGCT 57.350 37.500 0.00 0.00 0.00 4.75
47 48 8.027189 TGTATTATATAGAGAACATGTCGTGGC 58.973 37.037 0.00 0.00 0.00 5.01
48 49 9.908152 TTGTATTATATAGAGAACATGTCGTGG 57.092 33.333 0.00 0.00 0.00 4.94
53 54 9.371136 CCGCATTGTATTATATAGAGAACATGT 57.629 33.333 0.00 0.00 0.00 3.21
54 55 8.331022 GCCGCATTGTATTATATAGAGAACATG 58.669 37.037 0.00 0.00 0.00 3.21
55 56 7.495934 GGCCGCATTGTATTATATAGAGAACAT 59.504 37.037 0.00 0.00 0.00 2.71
56 57 6.816640 GGCCGCATTGTATTATATAGAGAACA 59.183 38.462 0.00 0.00 0.00 3.18
57 58 6.258068 GGGCCGCATTGTATTATATAGAGAAC 59.742 42.308 0.00 0.00 0.00 3.01
58 59 6.070481 TGGGCCGCATTGTATTATATAGAGAA 60.070 38.462 0.00 0.00 0.00 2.87
59 60 5.423931 TGGGCCGCATTGTATTATATAGAGA 59.576 40.000 0.00 0.00 0.00 3.10
60 61 5.670485 TGGGCCGCATTGTATTATATAGAG 58.330 41.667 0.00 0.00 0.00 2.43
61 62 5.423931 TCTGGGCCGCATTGTATTATATAGA 59.576 40.000 0.00 0.00 0.00 1.98
62 63 5.523916 GTCTGGGCCGCATTGTATTATATAG 59.476 44.000 0.00 0.00 0.00 1.31
63 64 5.424757 GTCTGGGCCGCATTGTATTATATA 58.575 41.667 0.00 0.00 0.00 0.86
64 65 4.261801 GTCTGGGCCGCATTGTATTATAT 58.738 43.478 0.00 0.00 0.00 0.86
65 66 3.670625 GTCTGGGCCGCATTGTATTATA 58.329 45.455 0.00 0.00 0.00 0.98
66 67 2.504367 GTCTGGGCCGCATTGTATTAT 58.496 47.619 0.00 0.00 0.00 1.28
67 68 1.808512 CGTCTGGGCCGCATTGTATTA 60.809 52.381 0.00 0.00 0.00 0.98
68 69 1.095228 CGTCTGGGCCGCATTGTATT 61.095 55.000 0.00 0.00 0.00 1.89
69 70 1.523711 CGTCTGGGCCGCATTGTAT 60.524 57.895 0.00 0.00 0.00 2.29
70 71 2.125310 CGTCTGGGCCGCATTGTA 60.125 61.111 0.00 0.00 0.00 2.41
71 72 3.545124 TTCGTCTGGGCCGCATTGT 62.545 57.895 0.00 0.00 0.00 2.71
72 73 2.745884 TTCGTCTGGGCCGCATTG 60.746 61.111 0.00 0.00 0.00 2.82
73 74 2.436646 CTTCGTCTGGGCCGCATT 60.437 61.111 0.00 0.00 0.00 3.56
74 75 4.473520 CCTTCGTCTGGGCCGCAT 62.474 66.667 0.00 0.00 0.00 4.73
81 82 0.458025 GCGTAGAACCCTTCGTCTGG 60.458 60.000 0.00 0.00 35.90 3.86
82 83 0.526662 AGCGTAGAACCCTTCGTCTG 59.473 55.000 0.00 0.00 35.90 3.51
83 84 1.201880 GAAGCGTAGAACCCTTCGTCT 59.798 52.381 0.00 0.00 35.90 4.18
84 85 1.626747 GAAGCGTAGAACCCTTCGTC 58.373 55.000 0.00 0.00 35.90 4.20
85 86 0.245813 GGAAGCGTAGAACCCTTCGT 59.754 55.000 0.00 0.00 36.66 3.85
86 87 0.459759 GGGAAGCGTAGAACCCTTCG 60.460 60.000 0.00 0.00 39.28 3.79
87 88 0.611714 TGGGAAGCGTAGAACCCTTC 59.388 55.000 0.00 0.00 42.49 3.46
88 89 1.061546 TTGGGAAGCGTAGAACCCTT 58.938 50.000 0.00 0.00 42.49 3.95
89 90 1.286248 ATTGGGAAGCGTAGAACCCT 58.714 50.000 0.00 0.00 42.49 4.34
90 91 2.014857 GAATTGGGAAGCGTAGAACCC 58.985 52.381 0.00 0.00 42.37 4.11
91 92 2.706890 TGAATTGGGAAGCGTAGAACC 58.293 47.619 0.00 0.00 0.00 3.62
92 93 4.192317 AGATGAATTGGGAAGCGTAGAAC 58.808 43.478 0.00 0.00 0.00 3.01
93 94 4.081142 TGAGATGAATTGGGAAGCGTAGAA 60.081 41.667 0.00 0.00 0.00 2.10
94 95 3.450817 TGAGATGAATTGGGAAGCGTAGA 59.549 43.478 0.00 0.00 0.00 2.59
95 96 3.557595 GTGAGATGAATTGGGAAGCGTAG 59.442 47.826 0.00 0.00 0.00 3.51
96 97 3.055458 TGTGAGATGAATTGGGAAGCGTA 60.055 43.478 0.00 0.00 0.00 4.42
97 98 2.290260 TGTGAGATGAATTGGGAAGCGT 60.290 45.455 0.00 0.00 0.00 5.07
98 99 2.358957 TGTGAGATGAATTGGGAAGCG 58.641 47.619 0.00 0.00 0.00 4.68
99 100 4.023365 GCTATGTGAGATGAATTGGGAAGC 60.023 45.833 0.00 0.00 0.00 3.86
100 101 5.128205 TGCTATGTGAGATGAATTGGGAAG 58.872 41.667 0.00 0.00 0.00 3.46
101 102 5.114764 TGCTATGTGAGATGAATTGGGAA 57.885 39.130 0.00 0.00 0.00 3.97
102 103 4.164796 ACTGCTATGTGAGATGAATTGGGA 59.835 41.667 0.00 0.00 0.00 4.37
103 104 4.458397 ACTGCTATGTGAGATGAATTGGG 58.542 43.478 0.00 0.00 0.00 4.12
104 105 5.121105 TGACTGCTATGTGAGATGAATTGG 58.879 41.667 0.00 0.00 0.00 3.16
105 106 6.706716 AGATGACTGCTATGTGAGATGAATTG 59.293 38.462 0.00 0.00 0.00 2.32
106 107 6.828788 AGATGACTGCTATGTGAGATGAATT 58.171 36.000 0.00 0.00 0.00 2.17
107 108 6.422344 AGATGACTGCTATGTGAGATGAAT 57.578 37.500 0.00 0.00 0.00 2.57
108 109 5.866159 AGATGACTGCTATGTGAGATGAA 57.134 39.130 0.00 0.00 0.00 2.57
109 110 5.597594 AGAAGATGACTGCTATGTGAGATGA 59.402 40.000 0.00 0.00 28.64 2.92
110 111 5.845103 AGAAGATGACTGCTATGTGAGATG 58.155 41.667 0.00 0.00 28.64 2.90
111 112 5.010922 GGAGAAGATGACTGCTATGTGAGAT 59.989 44.000 0.00 0.00 31.04 2.75
112 113 4.340666 GGAGAAGATGACTGCTATGTGAGA 59.659 45.833 0.00 0.00 31.04 3.27
113 114 4.341806 AGGAGAAGATGACTGCTATGTGAG 59.658 45.833 0.00 0.00 34.50 3.51
114 115 4.285020 AGGAGAAGATGACTGCTATGTGA 58.715 43.478 0.00 0.00 34.50 3.58
115 116 4.669206 AGGAGAAGATGACTGCTATGTG 57.331 45.455 0.00 0.00 34.50 3.21
116 117 5.426504 CAAAGGAGAAGATGACTGCTATGT 58.573 41.667 0.00 0.00 35.15 2.29
117 118 4.815308 CCAAAGGAGAAGATGACTGCTATG 59.185 45.833 0.00 0.00 35.15 2.23
118 119 4.685575 GCCAAAGGAGAAGATGACTGCTAT 60.686 45.833 0.00 0.00 35.15 2.97
119 120 3.369892 GCCAAAGGAGAAGATGACTGCTA 60.370 47.826 0.00 0.00 35.15 3.49
120 121 2.617532 GCCAAAGGAGAAGATGACTGCT 60.618 50.000 0.00 0.00 37.64 4.24
121 122 1.742268 GCCAAAGGAGAAGATGACTGC 59.258 52.381 0.00 0.00 0.00 4.40
122 123 2.363683 GGCCAAAGGAGAAGATGACTG 58.636 52.381 0.00 0.00 0.00 3.51
123 124 1.283321 GGGCCAAAGGAGAAGATGACT 59.717 52.381 4.39 0.00 0.00 3.41
124 125 1.756430 GGGCCAAAGGAGAAGATGAC 58.244 55.000 4.39 0.00 0.00 3.06
125 126 0.253044 CGGGCCAAAGGAGAAGATGA 59.747 55.000 4.39 0.00 0.00 2.92
126 127 0.253044 TCGGGCCAAAGGAGAAGATG 59.747 55.000 4.39 0.00 0.00 2.90
127 128 0.543749 CTCGGGCCAAAGGAGAAGAT 59.456 55.000 4.39 0.00 0.00 2.40
128 129 1.983224 CTCGGGCCAAAGGAGAAGA 59.017 57.895 4.39 0.00 0.00 2.87
129 130 1.746991 GCTCGGGCCAAAGGAGAAG 60.747 63.158 4.39 0.00 0.00 2.85
130 131 2.063015 TTGCTCGGGCCAAAGGAGAA 62.063 55.000 3.94 0.00 37.74 2.87
131 132 2.525124 TTGCTCGGGCCAAAGGAGA 61.525 57.895 3.94 0.00 37.74 3.71
132 133 2.034066 TTGCTCGGGCCAAAGGAG 59.966 61.111 3.94 6.53 37.74 3.69
133 134 2.282180 GTTGCTCGGGCCAAAGGA 60.282 61.111 3.94 0.00 37.74 3.36
134 135 3.373565 GGTTGCTCGGGCCAAAGG 61.374 66.667 3.94 0.00 37.74 3.11
135 136 3.373565 GGGTTGCTCGGGCCAAAG 61.374 66.667 3.94 1.36 37.74 2.77
136 137 3.740495 TTGGGTTGCTCGGGCCAAA 62.740 57.895 3.94 0.00 37.74 3.28
137 138 4.211330 TTGGGTTGCTCGGGCCAA 62.211 61.111 3.94 0.00 37.74 4.52
138 139 4.659172 CTTGGGTTGCTCGGGCCA 62.659 66.667 3.94 0.00 37.74 5.36
139 140 4.660938 ACTTGGGTTGCTCGGGCC 62.661 66.667 3.94 0.00 37.74 5.80
140 141 3.056328 GACTTGGGTTGCTCGGGC 61.056 66.667 0.00 0.00 39.26 6.13
141 142 2.359975 GGACTTGGGTTGCTCGGG 60.360 66.667 0.00 0.00 0.00 5.14
142 143 1.073199 AAGGACTTGGGTTGCTCGG 59.927 57.895 0.00 0.00 0.00 4.63
143 144 1.856265 GCAAGGACTTGGGTTGCTCG 61.856 60.000 13.41 0.00 42.70 5.03
144 145 0.823356 TGCAAGGACTTGGGTTGCTC 60.823 55.000 13.41 0.00 45.56 4.26
145 146 1.109323 GTGCAAGGACTTGGGTTGCT 61.109 55.000 13.41 0.00 45.56 3.91
146 147 1.363807 GTGCAAGGACTTGGGTTGC 59.636 57.895 13.41 0.00 45.56 4.17
147 148 0.754957 TGGTGCAAGGACTTGGGTTG 60.755 55.000 13.41 0.00 40.74 3.77
148 149 0.032615 TTGGTGCAAGGACTTGGGTT 60.033 50.000 13.41 0.00 40.74 4.11
149 150 0.468029 CTTGGTGCAAGGACTTGGGT 60.468 55.000 13.41 0.00 40.74 4.51
150 151 1.809567 GCTTGGTGCAAGGACTTGGG 61.810 60.000 13.41 0.00 41.31 4.12
151 152 1.662044 GCTTGGTGCAAGGACTTGG 59.338 57.895 13.41 0.00 41.31 3.61
152 153 1.283793 CGCTTGGTGCAAGGACTTG 59.716 57.895 7.67 7.67 41.31 3.16
153 154 1.898574 CCGCTTGGTGCAAGGACTT 60.899 57.895 0.00 0.00 41.31 3.01
154 155 2.281761 CCGCTTGGTGCAAGGACT 60.282 61.111 0.00 0.00 41.31 3.85
155 156 2.281484 TCCGCTTGGTGCAAGGAC 60.281 61.111 0.00 0.00 41.31 3.85
156 157 2.032528 CTCCGCTTGGTGCAAGGA 59.967 61.111 0.00 0.00 41.31 3.36
192 193 4.704833 CAGCACTCCACCACCCCG 62.705 72.222 0.00 0.00 0.00 5.73
194 195 3.909086 GAGCAGCACTCCACCACCC 62.909 68.421 0.00 0.00 39.75 4.61
195 196 2.359230 GAGCAGCACTCCACCACC 60.359 66.667 0.00 0.00 39.75 4.61
196 197 1.002868 ATGAGCAGCACTCCACCAC 60.003 57.895 0.00 0.00 45.61 4.16
197 198 1.002990 CATGAGCAGCACTCCACCA 60.003 57.895 0.00 0.00 45.61 4.17
198 199 2.404995 GCATGAGCAGCACTCCACC 61.405 63.158 0.00 0.00 45.61 4.61
199 200 2.404995 GGCATGAGCAGCACTCCAC 61.405 63.158 0.00 0.00 45.61 4.02
200 201 2.045634 GGCATGAGCAGCACTCCA 60.046 61.111 0.00 0.00 45.61 3.86
201 202 1.976132 TAGGGCATGAGCAGCACTCC 61.976 60.000 0.00 0.00 43.58 3.85
202 203 0.532417 CTAGGGCATGAGCAGCACTC 60.532 60.000 0.00 0.02 43.58 3.51
251 252 2.989166 CGTACCTGGAAACCGTTACTTC 59.011 50.000 0.00 0.00 0.00 3.01
256 257 0.465287 ACACGTACCTGGAAACCGTT 59.535 50.000 0.00 0.00 0.00 4.44
274 275 2.268298 CACAGTACAATCTGGGCGTAC 58.732 52.381 0.00 0.00 39.48 3.67
275 276 1.206132 CCACAGTACAATCTGGGCGTA 59.794 52.381 0.00 0.00 37.51 4.42
316 317 4.537945 ACTCCCACTATGACTAGCCTAA 57.462 45.455 0.00 0.00 0.00 2.69
317 318 5.133999 AGTTACTCCCACTATGACTAGCCTA 59.866 44.000 0.00 0.00 0.00 3.93
318 319 4.079096 AGTTACTCCCACTATGACTAGCCT 60.079 45.833 0.00 0.00 0.00 4.58
319 320 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
320 321 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
321 322 6.546403 TGCTAAGTTACTCCCACTATGACTAG 59.454 42.308 0.00 0.00 0.00 2.57
322 323 6.429151 TGCTAAGTTACTCCCACTATGACTA 58.571 40.000 0.00 0.00 0.00 2.59
323 324 5.269991 TGCTAAGTTACTCCCACTATGACT 58.730 41.667 0.00 0.00 0.00 3.41
324 325 5.593679 TGCTAAGTTACTCCCACTATGAC 57.406 43.478 0.00 0.00 0.00 3.06
325 326 5.720041 ACTTGCTAAGTTACTCCCACTATGA 59.280 40.000 0.00 0.00 39.04 2.15
326 327 5.978814 ACTTGCTAAGTTACTCCCACTATG 58.021 41.667 0.00 0.00 39.04 2.23
327 328 7.179694 TGTTACTTGCTAAGTTACTCCCACTAT 59.820 37.037 14.64 0.00 40.62 2.12
328 329 6.494491 TGTTACTTGCTAAGTTACTCCCACTA 59.506 38.462 14.64 0.00 40.62 2.74
329 330 5.306160 TGTTACTTGCTAAGTTACTCCCACT 59.694 40.000 14.64 0.00 40.62 4.00
330 331 5.544650 TGTTACTTGCTAAGTTACTCCCAC 58.455 41.667 14.64 0.00 40.62 4.61
331 332 5.811796 TGTTACTTGCTAAGTTACTCCCA 57.188 39.130 14.64 0.00 40.62 4.37
332 333 6.479331 GCTATGTTACTTGCTAAGTTACTCCC 59.521 42.308 14.64 3.51 40.62 4.30
333 334 7.010275 GTGCTATGTTACTTGCTAAGTTACTCC 59.990 40.741 14.64 5.90 40.62 3.85
334 335 7.544566 TGTGCTATGTTACTTGCTAAGTTACTC 59.455 37.037 14.64 6.57 40.62 2.59
335 336 7.331193 GTGTGCTATGTTACTTGCTAAGTTACT 59.669 37.037 14.64 0.00 40.62 2.24
336 337 7.331193 AGTGTGCTATGTTACTTGCTAAGTTAC 59.669 37.037 6.82 8.42 42.81 2.50
337 338 7.383687 AGTGTGCTATGTTACTTGCTAAGTTA 58.616 34.615 6.82 0.00 42.81 2.24
338 339 6.231211 AGTGTGCTATGTTACTTGCTAAGTT 58.769 36.000 6.82 0.00 42.81 2.66
339 340 5.794894 AGTGTGCTATGTTACTTGCTAAGT 58.205 37.500 6.74 6.74 45.40 2.24
340 341 5.292101 GGAGTGTGCTATGTTACTTGCTAAG 59.708 44.000 0.00 0.00 0.00 2.18
341 342 5.175859 GGAGTGTGCTATGTTACTTGCTAA 58.824 41.667 0.00 0.00 0.00 3.09
342 343 4.221924 TGGAGTGTGCTATGTTACTTGCTA 59.778 41.667 0.00 0.00 0.00 3.49
343 344 3.007940 TGGAGTGTGCTATGTTACTTGCT 59.992 43.478 0.00 0.00 0.00 3.91
344 345 3.334691 TGGAGTGTGCTATGTTACTTGC 58.665 45.455 0.00 0.00 0.00 4.01
345 346 5.237815 TCTTGGAGTGTGCTATGTTACTTG 58.762 41.667 0.00 0.00 0.00 3.16
346 347 5.483685 TCTTGGAGTGTGCTATGTTACTT 57.516 39.130 0.00 0.00 0.00 2.24
347 348 5.483685 TTCTTGGAGTGTGCTATGTTACT 57.516 39.130 0.00 0.00 0.00 2.24
348 349 6.743575 ATTTCTTGGAGTGTGCTATGTTAC 57.256 37.500 0.00 0.00 0.00 2.50
349 350 7.759489 AAATTTCTTGGAGTGTGCTATGTTA 57.241 32.000 0.00 0.00 0.00 2.41
350 351 6.655078 AAATTTCTTGGAGTGTGCTATGTT 57.345 33.333 0.00 0.00 0.00 2.71
351 352 6.655078 AAAATTTCTTGGAGTGTGCTATGT 57.345 33.333 0.00 0.00 0.00 2.29
352 353 6.128742 GCAAAAATTTCTTGGAGTGTGCTATG 60.129 38.462 12.13 0.00 0.00 2.23
353 354 5.928264 GCAAAAATTTCTTGGAGTGTGCTAT 59.072 36.000 12.13 0.00 0.00 2.97
354 355 5.068987 AGCAAAAATTTCTTGGAGTGTGCTA 59.931 36.000 12.13 0.00 36.88 3.49
355 356 4.122046 GCAAAAATTTCTTGGAGTGTGCT 58.878 39.130 12.13 0.00 0.00 4.40
356 357 4.122046 AGCAAAAATTTCTTGGAGTGTGC 58.878 39.130 12.13 0.00 0.00 4.57
357 358 7.439056 ACATAAGCAAAAATTTCTTGGAGTGTG 59.561 33.333 12.13 0.00 0.00 3.82
358 359 7.439056 CACATAAGCAAAAATTTCTTGGAGTGT 59.561 33.333 12.13 3.38 0.00 3.55
359 360 7.095523 CCACATAAGCAAAAATTTCTTGGAGTG 60.096 37.037 12.13 10.82 0.00 3.51
360 361 6.930722 CCACATAAGCAAAAATTTCTTGGAGT 59.069 34.615 12.13 2.73 0.00 3.85
361 362 6.128472 GCCACATAAGCAAAAATTTCTTGGAG 60.128 38.462 12.13 2.29 0.00 3.86
362 363 5.700373 GCCACATAAGCAAAAATTTCTTGGA 59.300 36.000 12.13 0.00 0.00 3.53
363 364 5.469421 TGCCACATAAGCAAAAATTTCTTGG 59.531 36.000 12.13 3.67 37.28 3.61
364 365 6.542574 TGCCACATAAGCAAAAATTTCTTG 57.457 33.333 0.00 0.33 37.28 3.02
375 376 6.176896 TCATTAACTACTTGCCACATAAGCA 58.823 36.000 0.00 0.00 38.81 3.91
376 377 6.538742 TCTCATTAACTACTTGCCACATAAGC 59.461 38.462 0.00 0.00 0.00 3.09
377 378 7.225538 CCTCTCATTAACTACTTGCCACATAAG 59.774 40.741 0.00 0.00 0.00 1.73
378 379 7.047891 CCTCTCATTAACTACTTGCCACATAA 58.952 38.462 0.00 0.00 0.00 1.90
379 380 6.156256 ACCTCTCATTAACTACTTGCCACATA 59.844 38.462 0.00 0.00 0.00 2.29
380 381 5.045578 ACCTCTCATTAACTACTTGCCACAT 60.046 40.000 0.00 0.00 0.00 3.21
381 382 4.286032 ACCTCTCATTAACTACTTGCCACA 59.714 41.667 0.00 0.00 0.00 4.17
382 383 4.631813 CACCTCTCATTAACTACTTGCCAC 59.368 45.833 0.00 0.00 0.00 5.01
383 384 4.323485 CCACCTCTCATTAACTACTTGCCA 60.323 45.833 0.00 0.00 0.00 4.92
384 385 4.192317 CCACCTCTCATTAACTACTTGCC 58.808 47.826 0.00 0.00 0.00 4.52
385 386 4.833390 ACCACCTCTCATTAACTACTTGC 58.167 43.478 0.00 0.00 0.00 4.01
386 387 7.383687 TGTTACCACCTCTCATTAACTACTTG 58.616 38.462 0.00 0.00 0.00 3.16
387 388 7.549147 TGTTACCACCTCTCATTAACTACTT 57.451 36.000 0.00 0.00 0.00 2.24
388 389 7.735326 ATGTTACCACCTCTCATTAACTACT 57.265 36.000 0.00 0.00 0.00 2.57
413 414 9.367444 GGAAGCGCTATGTTATAGTAACATATT 57.633 33.333 12.05 11.86 40.91 1.28
414 415 7.980099 GGGAAGCGCTATGTTATAGTAACATAT 59.020 37.037 12.05 7.46 40.91 1.78
415 416 7.039574 TGGGAAGCGCTATGTTATAGTAACATA 60.040 37.037 12.05 17.06 40.87 2.29
416 417 6.164176 GGGAAGCGCTATGTTATAGTAACAT 58.836 40.000 12.05 16.71 42.82 2.71
417 418 5.069383 TGGGAAGCGCTATGTTATAGTAACA 59.931 40.000 12.05 5.15 34.31 2.41
418 419 5.535333 TGGGAAGCGCTATGTTATAGTAAC 58.465 41.667 12.05 0.00 0.00 2.50
419 420 5.794726 TGGGAAGCGCTATGTTATAGTAA 57.205 39.130 12.05 0.00 0.00 2.24
420 421 5.537295 TCTTGGGAAGCGCTATGTTATAGTA 59.463 40.000 12.05 0.00 0.00 1.82
421 422 4.344102 TCTTGGGAAGCGCTATGTTATAGT 59.656 41.667 12.05 0.00 0.00 2.12
422 423 4.883083 TCTTGGGAAGCGCTATGTTATAG 58.117 43.478 12.05 2.84 0.00 1.31
423 424 4.948341 TCTTGGGAAGCGCTATGTTATA 57.052 40.909 12.05 0.00 0.00 0.98
424 425 3.838244 TCTTGGGAAGCGCTATGTTAT 57.162 42.857 12.05 0.00 0.00 1.89
425 426 3.838244 ATCTTGGGAAGCGCTATGTTA 57.162 42.857 12.05 0.00 0.00 2.41
426 427 2.717639 ATCTTGGGAAGCGCTATGTT 57.282 45.000 12.05 0.00 0.00 2.71
427 428 2.965831 TCTATCTTGGGAAGCGCTATGT 59.034 45.455 12.05 0.00 0.00 2.29
428 429 3.667497 TCTATCTTGGGAAGCGCTATG 57.333 47.619 12.05 0.00 0.00 2.23
429 430 4.284490 TCATTCTATCTTGGGAAGCGCTAT 59.716 41.667 12.05 0.00 0.00 2.97
430 431 3.641436 TCATTCTATCTTGGGAAGCGCTA 59.359 43.478 12.05 0.00 0.00 4.26
431 432 2.435805 TCATTCTATCTTGGGAAGCGCT 59.564 45.455 2.64 2.64 0.00 5.92
432 433 2.805099 CTCATTCTATCTTGGGAAGCGC 59.195 50.000 0.00 0.00 0.00 5.92
433 434 4.054671 GACTCATTCTATCTTGGGAAGCG 58.945 47.826 0.00 0.00 0.00 4.68
434 435 5.289083 AGACTCATTCTATCTTGGGAAGC 57.711 43.478 0.00 0.00 30.17 3.86
435 436 7.353414 TGTAGACTCATTCTATCTTGGGAAG 57.647 40.000 0.00 0.00 39.13 3.46
436 437 7.633772 GCTTGTAGACTCATTCTATCTTGGGAA 60.634 40.741 0.00 0.00 39.13 3.97
437 438 6.183360 GCTTGTAGACTCATTCTATCTTGGGA 60.183 42.308 0.00 0.00 39.13 4.37
438 439 5.988561 GCTTGTAGACTCATTCTATCTTGGG 59.011 44.000 0.00 0.00 39.13 4.12
439 440 6.815089 AGCTTGTAGACTCATTCTATCTTGG 58.185 40.000 0.00 0.00 39.13 3.61
440 441 9.979578 ATTAGCTTGTAGACTCATTCTATCTTG 57.020 33.333 0.00 0.00 39.13 3.02
450 451 9.162764 GGTTTCATTTATTAGCTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
451 452 9.162764 TGGTTTCATTTATTAGCTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
452 453 9.686683 ATGGTTTCATTTATTAGCTTGTAGACT 57.313 29.630 0.00 0.00 0.00 3.24
481 482 8.965819 TGCAAAATAACATGGTATTAGTGTCAT 58.034 29.630 16.28 0.00 0.00 3.06
482 483 8.240682 GTGCAAAATAACATGGTATTAGTGTCA 58.759 33.333 16.28 14.69 0.00 3.58
483 484 8.458843 AGTGCAAAATAACATGGTATTAGTGTC 58.541 33.333 16.28 12.82 0.00 3.67
484 485 8.348285 AGTGCAAAATAACATGGTATTAGTGT 57.652 30.769 16.28 0.00 0.00 3.55
490 491 9.407380 TCTTCATAGTGCAAAATAACATGGTAT 57.593 29.630 0.00 0.00 0.00 2.73
491 492 8.800370 TCTTCATAGTGCAAAATAACATGGTA 57.200 30.769 0.00 0.00 0.00 3.25
492 493 7.701539 TCTTCATAGTGCAAAATAACATGGT 57.298 32.000 0.00 0.00 0.00 3.55
493 494 9.888878 CTATCTTCATAGTGCAAAATAACATGG 57.111 33.333 0.00 0.00 0.00 3.66
504 505 9.409918 AGTCTAAGTTACTATCTTCATAGTGCA 57.590 33.333 5.12 0.00 44.33 4.57
511 512 9.955102 TGACACTAGTCTAAGTTACTATCTTCA 57.045 33.333 0.00 0.00 45.20 3.02
514 515 8.842280 GCATGACACTAGTCTAAGTTACTATCT 58.158 37.037 0.00 0.00 45.20 1.98
515 516 8.622157 TGCATGACACTAGTCTAAGTTACTATC 58.378 37.037 0.00 0.00 45.20 2.08
516 517 8.521170 TGCATGACACTAGTCTAAGTTACTAT 57.479 34.615 0.00 0.00 45.20 2.12
517 518 7.933215 TGCATGACACTAGTCTAAGTTACTA 57.067 36.000 0.00 0.00 45.20 1.82
518 519 6.835819 TGCATGACACTAGTCTAAGTTACT 57.164 37.500 0.00 0.00 45.20 2.24
519 520 9.186323 CATATGCATGACACTAGTCTAAGTTAC 57.814 37.037 10.16 0.00 45.20 2.50
520 521 9.131791 TCATATGCATGACACTAGTCTAAGTTA 57.868 33.333 10.16 0.00 45.20 2.24
521 522 8.011844 TCATATGCATGACACTAGTCTAAGTT 57.988 34.615 10.16 0.00 45.20 2.66
522 523 7.588497 TCATATGCATGACACTAGTCTAAGT 57.412 36.000 10.16 0.00 45.20 2.24
539 540 9.843334 GGAGTAACTTATACTAGTGTCATATGC 57.157 37.037 5.39 0.00 0.00 3.14
541 542 9.531158 GGGGAGTAACTTATACTAGTGTCATAT 57.469 37.037 5.39 0.00 0.00 1.78
542 543 8.505246 TGGGGAGTAACTTATACTAGTGTCATA 58.495 37.037 5.39 0.00 0.00 2.15
543 544 7.287235 GTGGGGAGTAACTTATACTAGTGTCAT 59.713 40.741 5.39 0.00 0.00 3.06
544 545 6.604795 GTGGGGAGTAACTTATACTAGTGTCA 59.395 42.308 5.39 0.00 0.00 3.58
545 546 6.832900 AGTGGGGAGTAACTTATACTAGTGTC 59.167 42.308 5.39 0.00 0.00 3.67
546 547 6.739664 AGTGGGGAGTAACTTATACTAGTGT 58.260 40.000 5.39 0.39 0.00 3.55
547 548 8.794553 CATAGTGGGGAGTAACTTATACTAGTG 58.205 40.741 5.39 0.00 0.00 2.74
548 549 8.730948 TCATAGTGGGGAGTAACTTATACTAGT 58.269 37.037 0.00 0.00 0.00 2.57
549 550 9.012161 GTCATAGTGGGGAGTAACTTATACTAG 57.988 40.741 0.00 0.00 0.00 2.57
550 551 7.946776 GGTCATAGTGGGGAGTAACTTATACTA 59.053 40.741 0.00 0.00 0.00 1.82
551 552 6.781507 GGTCATAGTGGGGAGTAACTTATACT 59.218 42.308 0.00 0.00 0.00 2.12
552 553 6.552350 TGGTCATAGTGGGGAGTAACTTATAC 59.448 42.308 0.00 0.00 0.00 1.47
553 554 6.685541 TGGTCATAGTGGGGAGTAACTTATA 58.314 40.000 0.00 0.00 0.00 0.98
554 555 5.535029 TGGTCATAGTGGGGAGTAACTTAT 58.465 41.667 0.00 0.00 0.00 1.73
555 556 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
556 557 3.798515 TGGTCATAGTGGGGAGTAACTT 58.201 45.455 0.00 0.00 0.00 2.66
557 558 3.484953 TGGTCATAGTGGGGAGTAACT 57.515 47.619 0.00 0.00 0.00 2.24
558 559 3.370209 GGTTGGTCATAGTGGGGAGTAAC 60.370 52.174 0.00 0.00 0.00 2.50
559 560 2.841881 GGTTGGTCATAGTGGGGAGTAA 59.158 50.000 0.00 0.00 0.00 2.24
560 561 2.045326 AGGTTGGTCATAGTGGGGAGTA 59.955 50.000 0.00 0.00 0.00 2.59
561 562 1.203440 AGGTTGGTCATAGTGGGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
562 563 1.584724 AGGTTGGTCATAGTGGGGAG 58.415 55.000 0.00 0.00 0.00 4.30
563 564 2.053747 AAGGTTGGTCATAGTGGGGA 57.946 50.000 0.00 0.00 0.00 4.81
564 565 3.820557 CATAAGGTTGGTCATAGTGGGG 58.179 50.000 0.00 0.00 0.00 4.96
565 566 3.117888 AGCATAAGGTTGGTCATAGTGGG 60.118 47.826 0.00 0.00 0.00 4.61
566 567 3.879295 CAGCATAAGGTTGGTCATAGTGG 59.121 47.826 0.00 0.00 0.00 4.00
567 568 4.769688 TCAGCATAAGGTTGGTCATAGTG 58.230 43.478 0.00 0.00 0.00 2.74
568 569 4.716784 TCTCAGCATAAGGTTGGTCATAGT 59.283 41.667 0.00 0.00 0.00 2.12
569 570 5.282055 TCTCAGCATAAGGTTGGTCATAG 57.718 43.478 0.00 0.00 0.00 2.23
570 571 5.894298 ATCTCAGCATAAGGTTGGTCATA 57.106 39.130 0.00 0.00 0.00 2.15
571 572 4.785346 ATCTCAGCATAAGGTTGGTCAT 57.215 40.909 0.00 0.00 0.00 3.06
572 573 5.894298 ATATCTCAGCATAAGGTTGGTCA 57.106 39.130 0.00 0.00 0.00 4.02
573 574 9.539825 CATATATATCTCAGCATAAGGTTGGTC 57.460 37.037 0.00 0.00 0.00 4.02
574 575 9.271921 TCATATATATCTCAGCATAAGGTTGGT 57.728 33.333 0.00 0.00 0.00 3.67
624 625 5.537674 TGGTCGAGTAAGTACCTTTTTCTCT 59.462 40.000 0.00 0.00 34.23 3.10
629 630 5.303845 AGAACTGGTCGAGTAAGTACCTTTT 59.696 40.000 0.00 0.00 33.09 2.27
633 634 4.780275 AAGAACTGGTCGAGTAAGTACC 57.220 45.455 0.00 0.00 33.09 3.34
635 636 6.567321 CGAAGAAAGAACTGGTCGAGTAAGTA 60.567 42.308 0.00 0.00 33.09 2.24
636 637 5.530712 GAAGAAAGAACTGGTCGAGTAAGT 58.469 41.667 0.00 0.00 33.09 2.24
637 638 4.617645 CGAAGAAAGAACTGGTCGAGTAAG 59.382 45.833 0.00 0.00 33.09 2.34
638 639 4.037208 ACGAAGAAAGAACTGGTCGAGTAA 59.963 41.667 0.00 0.00 33.09 2.24
643 644 3.014604 AGACGAAGAAAGAACTGGTCG 57.985 47.619 0.00 0.00 32.90 4.79
674 1148 0.318445 GACGAACTGGCTGTACACGT 60.318 55.000 17.97 17.97 36.44 4.49
708 1303 0.324645 GCATGTGAAGGGGGTTGGAT 60.325 55.000 0.00 0.00 0.00 3.41
714 1309 1.683025 TGCATGCATGTGAAGGGGG 60.683 57.895 26.79 0.00 0.00 5.40
838 1437 2.411031 GCGTGTTTACACTTGACGGATG 60.411 50.000 10.92 0.00 44.34 3.51
867 1468 2.930040 CCTCGTGCACTCGAATTAATGT 59.070 45.455 16.19 0.00 39.34 2.71
872 1473 1.741770 GGCCTCGTGCACTCGAATT 60.742 57.895 16.19 0.00 43.89 2.17
986 1595 1.394917 CGTCCATGGAGCTTTTTCTCG 59.605 52.381 16.81 8.01 33.98 4.04
994 1603 3.474570 GGAGCCGTCCATGGAGCT 61.475 66.667 24.45 24.45 43.31 4.09
1242 2210 3.062466 CTCTCGACGAGGGTGCCA 61.062 66.667 23.92 3.32 36.06 4.92
1348 2316 1.279496 TAGCCATAGCCATAGCCAGG 58.721 55.000 0.00 0.00 41.25 4.45
1349 2317 2.421107 CCATAGCCATAGCCATAGCCAG 60.421 54.545 0.00 0.00 41.25 4.85
1382 2356 2.189191 GACCCAGCTGTCAGCATGGA 62.189 60.000 29.81 0.00 45.56 3.41
1543 2520 2.089980 GACCTCGGTGAGTAAGTAGCA 58.910 52.381 0.00 0.00 0.00 3.49
1551 2528 0.469331 TCTTGGTGACCTCGGTGAGT 60.469 55.000 2.11 0.00 0.00 3.41
1562 2539 1.079490 AGGAGGAGGTGATCTTGGTGA 59.921 52.381 0.00 0.00 0.00 4.02
1568 2545 0.847373 TAGCGAGGAGGAGGTGATCT 59.153 55.000 0.00 0.00 0.00 2.75
1842 2831 3.466836 ACTCGTCACATTGAAAAGCTCA 58.533 40.909 0.00 0.00 0.00 4.26
1985 2975 9.520515 AGGACAAGAAACTGAAACATACATATT 57.479 29.630 0.00 0.00 0.00 1.28
2034 3029 2.152016 GAGGTTTTTGAACTCGGGGAG 58.848 52.381 0.00 0.00 35.52 4.30
2166 3161 7.209475 AGTAGTAGTAGTAGTAGTAGCAGCAC 58.791 42.308 0.00 0.00 0.00 4.40
2256 3266 6.785963 TCTCCTTTCTAGAACTTTTAGGTCCA 59.214 38.462 16.34 1.57 30.45 4.02
2320 3360 3.495806 CCTGGGAATATGAGTGAGCCTTC 60.496 52.174 0.00 0.00 0.00 3.46
2496 3536 5.584253 AGCTGACATATGGATACGGTATC 57.416 43.478 17.85 17.85 42.51 2.24
2526 3585 3.797559 AAGCTAGGAAGGCTTCAAACT 57.202 42.857 27.17 17.54 45.45 2.66
2580 3648 6.539103 AGACACAACTTGGACTTAAAGAAGAC 59.461 38.462 0.00 0.00 36.45 3.01
2786 6099 5.107607 GGAACATAATCTACATAACGCACGG 60.108 44.000 0.00 0.00 0.00 4.94
2787 6100 5.107607 GGGAACATAATCTACATAACGCACG 60.108 44.000 0.00 0.00 0.00 5.34
2876 6190 7.591006 TTGTACGTCAAGAACATAATCTTCC 57.409 36.000 0.00 0.00 37.56 3.46
2895 6209 2.097466 ACTTGCAACACTGTGCTTGTAC 59.903 45.455 7.90 1.84 45.17 2.90
2957 6271 6.250819 CGAGTTTCCAACTAAATACATGCAG 58.749 40.000 0.00 0.00 43.03 4.41
3003 6321 6.320164 AGACTGTACCAAGTGCATTTTTACAA 59.680 34.615 11.92 1.44 0.00 2.41
3066 6386 4.897076 TCCACTTGTTTACTGAGTGTCCTA 59.103 41.667 0.00 0.00 39.23 2.94
3114 6435 5.343307 AATGCAACATTGTAGGGGAATTC 57.657 39.130 0.00 0.00 0.00 2.17
3314 6636 4.739137 GCCATGGTGTTTTCTTTGCTTGTA 60.739 41.667 14.67 0.00 0.00 2.41
3340 6662 8.592809 ACTCCAAACATTTGCCATCTTAATAAA 58.407 29.630 0.00 0.00 36.86 1.40
3596 6926 4.749099 GCATGGCAACTTTGTACATGAAAA 59.251 37.500 22.15 0.00 42.64 2.29
3598 6928 3.573538 AGCATGGCAACTTTGTACATGAA 59.426 39.130 22.15 0.00 42.64 2.57
3665 6995 6.071447 TGTGTTCTGTAAAATAGCATGGCAAT 60.071 34.615 0.00 0.00 0.00 3.56
3794 7133 1.571215 GCGTTGAACACCCCCTAACG 61.571 60.000 0.00 0.00 44.77 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.