Multiple sequence alignment - TraesCS3A01G517000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G517000 chr3A 100.000 4225 0 0 1 4225 734138339 734134115 0.000000e+00 7803.0
1 TraesCS3A01G517000 chr3A 97.667 3429 76 3 797 4225 18252352 18248928 0.000000e+00 5886.0
2 TraesCS3A01G517000 chr3A 98.237 3233 51 3 993 4225 550991818 550995044 0.000000e+00 5650.0
3 TraesCS3A01G517000 chr3A 88.094 2419 261 16 1816 4225 706253112 706255512 0.000000e+00 2846.0
4 TraesCS3A01G517000 chr3A 96.985 199 6 0 799 997 550978207 550978405 6.770000e-88 335.0
5 TraesCS3A01G517000 chr4A 98.512 3427 50 1 799 4225 584413613 584410188 0.000000e+00 6045.0
6 TraesCS3A01G517000 chr6A 98.105 3430 49 4 797 4225 5066950 5070364 0.000000e+00 5960.0
7 TraesCS3A01G517000 chr2A 97.725 3428 69 5 798 4225 152005306 152001888 0.000000e+00 5890.0
8 TraesCS3A01G517000 chr5D 91.475 2440 162 16 1816 4225 432138392 432135969 0.000000e+00 3312.0
9 TraesCS3A01G517000 chr5D 84.753 728 80 18 800 1502 432139542 432138821 0.000000e+00 701.0
10 TraesCS3A01G517000 chr5D 82.298 322 33 14 1500 1810 432138744 432138436 1.510000e-64 257.0
11 TraesCS3A01G517000 chr1D 92.941 2054 126 9 2176 4225 13203606 13201568 0.000000e+00 2972.0
12 TraesCS3A01G517000 chr1D 91.862 1794 111 17 2461 4225 316630652 316628865 0.000000e+00 2471.0
13 TraesCS3A01G517000 chr1D 85.054 736 77 18 797 1502 13204482 13203750 0.000000e+00 719.0
14 TraesCS3A01G517000 chr1D 87.293 362 42 3 799 1159 316631007 316630649 1.090000e-110 411.0
15 TraesCS3A01G517000 chr3B 87.737 2422 265 18 1816 4225 3118209 3115808 0.000000e+00 2798.0
16 TraesCS3A01G517000 chr3B 87.734 587 45 16 219 799 811461580 811461015 0.000000e+00 660.0
17 TraesCS3A01G517000 chr3B 81.070 729 101 24 797 1502 3119490 3118776 7.990000e-152 547.0
18 TraesCS3A01G517000 chr3B 89.617 183 9 1 46 218 811461878 811461696 1.530000e-54 224.0
19 TraesCS3A01G517000 chr6D 82.216 731 71 30 797 1502 325709712 325709016 3.660000e-160 575.0
20 TraesCS3A01G517000 chr6D 81.585 467 43 22 1500 1933 325708939 325708483 3.130000e-91 346.0
21 TraesCS3A01G517000 chr6B 76.983 517 109 8 1855 2368 183306185 183306694 1.920000e-73 287.0
22 TraesCS3A01G517000 chr5B 100.000 30 0 0 1 30 611527909 611527938 5.900000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G517000 chr3A 734134115 734138339 4224 True 7803.000000 7803 100.000000 1 4225 1 chr3A.!!$R2 4224
1 TraesCS3A01G517000 chr3A 18248928 18252352 3424 True 5886.000000 5886 97.667000 797 4225 1 chr3A.!!$R1 3428
2 TraesCS3A01G517000 chr3A 550991818 550995044 3226 False 5650.000000 5650 98.237000 993 4225 1 chr3A.!!$F2 3232
3 TraesCS3A01G517000 chr3A 706253112 706255512 2400 False 2846.000000 2846 88.094000 1816 4225 1 chr3A.!!$F3 2409
4 TraesCS3A01G517000 chr4A 584410188 584413613 3425 True 6045.000000 6045 98.512000 799 4225 1 chr4A.!!$R1 3426
5 TraesCS3A01G517000 chr6A 5066950 5070364 3414 False 5960.000000 5960 98.105000 797 4225 1 chr6A.!!$F1 3428
6 TraesCS3A01G517000 chr2A 152001888 152005306 3418 True 5890.000000 5890 97.725000 798 4225 1 chr2A.!!$R1 3427
7 TraesCS3A01G517000 chr5D 432135969 432139542 3573 True 1423.333333 3312 86.175333 800 4225 3 chr5D.!!$R1 3425
8 TraesCS3A01G517000 chr1D 13201568 13204482 2914 True 1845.500000 2972 88.997500 797 4225 2 chr1D.!!$R1 3428
9 TraesCS3A01G517000 chr1D 316628865 316631007 2142 True 1441.000000 2471 89.577500 799 4225 2 chr1D.!!$R2 3426
10 TraesCS3A01G517000 chr3B 3115808 3119490 3682 True 1672.500000 2798 84.403500 797 4225 2 chr3B.!!$R1 3428
11 TraesCS3A01G517000 chr3B 811461015 811461878 863 True 442.000000 660 88.675500 46 799 2 chr3B.!!$R2 753
12 TraesCS3A01G517000 chr6D 325708483 325709712 1229 True 460.500000 575 81.900500 797 1933 2 chr6D.!!$R1 1136
13 TraesCS3A01G517000 chr6B 183306185 183306694 509 False 287.000000 287 76.983000 1855 2368 1 chr6B.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 231 0.035056 ACACAGGTTAGGCAGATGGC 60.035 55.0 0.0 0.0 43.74 4.40 F
369 380 0.037734 GGGGTGGTCCAGTAAAGTGG 59.962 60.0 0.0 0.0 39.19 4.00 F
413 424 0.393820 TTTTAGAACCTCCCGTGCGT 59.606 50.0 0.0 0.0 0.00 5.24 F
415 426 0.393820 TTAGAACCTCCCGTGCGTTT 59.606 50.0 0.0 0.0 0.00 3.60 F
417 428 0.464916 AGAACCTCCCGTGCGTTTTT 60.465 50.0 0.0 0.0 0.00 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 2545 0.394899 GCCTCTAGTGCAGCCCAAAT 60.395 55.000 0.00 0.00 0.00 2.32 R
2515 2991 9.722056 CTGAATGTATTATTGCTAGAAAACCAC 57.278 33.333 0.00 0.00 0.00 4.16 R
2560 3036 6.966534 AATGTCAAGTCATTTCCTTGAGTT 57.033 33.333 3.25 0.45 46.51 3.01 R
2631 3107 4.778534 ATTTCATGCAAAGTCTGTCCAG 57.221 40.909 0.00 0.00 0.00 3.86 R
3324 3809 5.717078 TGGTTGTACTGTACTCCACTTAG 57.283 43.478 21.80 0.00 32.08 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
20 21 1.755380 AGTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
21 22 1.479730 GTATTTCCGAACGGAGGGAGT 59.520 52.381 15.34 1.96 46.06 3.85
22 23 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
23 24 1.180029 TTTCCGAACGGAGGGAGTAG 58.820 55.000 15.34 0.00 46.06 2.57
24 25 0.682209 TTCCGAACGGAGGGAGTAGG 60.682 60.000 15.34 0.00 46.06 3.18
25 26 1.379576 CCGAACGGAGGGAGTAGGT 60.380 63.158 7.53 0.00 37.50 3.08
26 27 0.969409 CCGAACGGAGGGAGTAGGTT 60.969 60.000 7.53 0.00 37.50 3.50
27 28 0.455005 CGAACGGAGGGAGTAGGTTC 59.545 60.000 0.00 0.00 34.99 3.62
28 29 0.822811 GAACGGAGGGAGTAGGTTCC 59.177 60.000 0.00 0.00 36.46 3.62
29 30 0.115745 AACGGAGGGAGTAGGTTCCA 59.884 55.000 0.00 0.00 39.09 3.53
30 31 0.115745 ACGGAGGGAGTAGGTTCCAA 59.884 55.000 0.00 0.00 39.09 3.53
31 32 0.824759 CGGAGGGAGTAGGTTCCAAG 59.175 60.000 0.00 0.00 39.09 3.61
32 33 1.618888 CGGAGGGAGTAGGTTCCAAGA 60.619 57.143 0.00 0.00 39.09 3.02
33 34 1.832366 GGAGGGAGTAGGTTCCAAGAC 59.168 57.143 0.00 0.00 39.09 3.01
34 35 2.537143 GAGGGAGTAGGTTCCAAGACA 58.463 52.381 0.00 0.00 39.09 3.41
35 36 2.498078 GAGGGAGTAGGTTCCAAGACAG 59.502 54.545 0.00 0.00 39.09 3.51
36 37 1.066071 GGGAGTAGGTTCCAAGACAGC 60.066 57.143 0.00 0.00 39.09 4.40
37 38 1.623811 GGAGTAGGTTCCAAGACAGCA 59.376 52.381 0.00 0.00 37.20 4.41
38 39 2.354203 GGAGTAGGTTCCAAGACAGCAG 60.354 54.545 0.00 0.00 37.20 4.24
39 40 1.625818 AGTAGGTTCCAAGACAGCAGG 59.374 52.381 0.00 0.00 0.00 4.85
40 41 0.324943 TAGGTTCCAAGACAGCAGGC 59.675 55.000 0.00 0.00 0.00 4.85
41 42 1.228245 GGTTCCAAGACAGCAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
42 43 1.239968 GGTTCCAAGACAGCAGGCAG 61.240 60.000 0.00 0.00 0.00 4.85
43 44 0.250467 GTTCCAAGACAGCAGGCAGA 60.250 55.000 0.00 0.00 0.00 4.26
44 45 0.694771 TTCCAAGACAGCAGGCAGAT 59.305 50.000 0.00 0.00 0.00 2.90
134 145 4.244066 GACTCGATCTCCATCCAATGATG 58.756 47.826 0.00 0.00 46.61 3.07
175 186 1.734117 GTTTCGGTCGGGTACACGG 60.734 63.158 19.08 1.17 0.00 4.94
194 205 1.730451 GCTCGACCACTCCTAGCTCC 61.730 65.000 0.00 0.00 0.00 4.70
199 210 4.338815 CACTCCTAGCTCCGTGGA 57.661 61.111 0.00 0.00 0.00 4.02
200 211 2.814023 CACTCCTAGCTCCGTGGAT 58.186 57.895 0.00 0.00 0.00 3.41
201 212 1.982660 CACTCCTAGCTCCGTGGATA 58.017 55.000 0.00 0.00 0.00 2.59
202 213 1.609555 CACTCCTAGCTCCGTGGATAC 59.390 57.143 0.00 0.00 0.00 2.24
216 227 2.827755 TGGATACACAGGTTAGGCAGA 58.172 47.619 0.00 0.00 46.17 4.26
217 228 3.384168 TGGATACACAGGTTAGGCAGAT 58.616 45.455 0.00 0.00 46.17 2.90
218 229 3.134623 TGGATACACAGGTTAGGCAGATG 59.865 47.826 0.00 0.00 46.17 2.90
219 230 3.495100 GGATACACAGGTTAGGCAGATGG 60.495 52.174 0.00 0.00 0.00 3.51
220 231 0.035056 ACACAGGTTAGGCAGATGGC 60.035 55.000 0.00 0.00 43.74 4.40
233 244 4.149910 GCAGATGGCCAAAACAAAATTG 57.850 40.909 10.96 0.00 36.11 2.32
234 245 3.565063 GCAGATGGCCAAAACAAAATTGT 59.435 39.130 10.96 0.00 38.92 2.71
235 246 4.319694 GCAGATGGCCAAAACAAAATTGTC 60.320 41.667 10.96 0.00 37.12 3.18
236 247 4.057432 AGATGGCCAAAACAAAATTGTCG 58.943 39.130 10.96 0.00 41.31 4.35
237 248 3.252974 TGGCCAAAACAAAATTGTCGT 57.747 38.095 0.61 0.00 41.31 4.34
238 249 3.600388 TGGCCAAAACAAAATTGTCGTT 58.400 36.364 0.61 0.00 41.31 3.85
239 250 3.372206 TGGCCAAAACAAAATTGTCGTTG 59.628 39.130 0.61 12.36 41.31 4.10
240 251 3.350043 GCCAAAACAAAATTGTCGTTGC 58.650 40.909 13.28 6.26 41.31 4.17
241 252 3.592309 CCAAAACAAAATTGTCGTTGCG 58.408 40.909 13.28 6.81 41.31 4.85
242 253 3.304559 CCAAAACAAAATTGTCGTTGCGA 59.695 39.130 13.28 0.00 41.31 5.10
251 262 2.974717 TCGTTGCGACTGGGCATA 59.025 55.556 1.84 0.00 43.52 3.14
252 263 1.447140 TCGTTGCGACTGGGCATAC 60.447 57.895 1.84 0.00 43.52 2.39
253 264 1.739929 CGTTGCGACTGGGCATACA 60.740 57.895 1.84 0.00 43.52 2.29
254 265 1.295357 CGTTGCGACTGGGCATACAA 61.295 55.000 1.84 0.00 43.52 2.41
255 266 0.447801 GTTGCGACTGGGCATACAAG 59.552 55.000 0.00 0.00 43.52 3.16
256 267 1.305219 TTGCGACTGGGCATACAAGC 61.305 55.000 0.00 0.00 43.52 4.01
257 268 2.813179 GCGACTGGGCATACAAGCG 61.813 63.158 0.00 0.00 34.64 4.68
258 269 1.153647 CGACTGGGCATACAAGCGA 60.154 57.895 0.00 0.00 34.64 4.93
259 270 1.148157 CGACTGGGCATACAAGCGAG 61.148 60.000 0.00 0.00 34.64 5.03
260 271 1.432270 GACTGGGCATACAAGCGAGC 61.432 60.000 0.00 0.00 34.64 5.03
261 272 2.124736 TGGGCATACAAGCGAGCC 60.125 61.111 0.00 0.00 46.28 4.70
263 274 2.124736 GGCATACAAGCGAGCCCA 60.125 61.111 0.00 0.00 41.25 5.36
264 275 1.748879 GGCATACAAGCGAGCCCAA 60.749 57.895 0.00 0.00 41.25 4.12
265 276 1.429423 GCATACAAGCGAGCCCAAC 59.571 57.895 0.00 0.00 0.00 3.77
266 277 1.305219 GCATACAAGCGAGCCCAACA 61.305 55.000 0.00 0.00 0.00 3.33
267 278 1.382522 CATACAAGCGAGCCCAACAT 58.617 50.000 0.00 0.00 0.00 2.71
268 279 1.064505 CATACAAGCGAGCCCAACATG 59.935 52.381 0.00 0.00 0.00 3.21
269 280 0.676466 TACAAGCGAGCCCAACATGG 60.676 55.000 0.00 0.00 37.25 3.66
286 297 3.359002 GCTCTGCCAACCACAAGG 58.641 61.111 0.00 0.00 42.21 3.61
287 298 1.228245 GCTCTGCCAACCACAAGGA 60.228 57.895 0.00 0.00 38.69 3.36
288 299 1.239968 GCTCTGCCAACCACAAGGAG 61.240 60.000 0.00 0.00 38.69 3.69
289 300 0.397941 CTCTGCCAACCACAAGGAGA 59.602 55.000 0.00 0.00 38.69 3.71
290 301 0.108585 TCTGCCAACCACAAGGAGAC 59.891 55.000 0.00 0.00 38.69 3.36
291 302 0.890996 CTGCCAACCACAAGGAGACC 60.891 60.000 0.00 0.00 38.69 3.85
292 303 1.603739 GCCAACCACAAGGAGACCC 60.604 63.158 0.00 0.00 38.69 4.46
293 304 1.302511 CCAACCACAAGGAGACCCG 60.303 63.158 0.00 0.00 38.69 5.28
294 305 1.302511 CAACCACAAGGAGACCCGG 60.303 63.158 0.00 0.00 38.69 5.73
295 306 3.192103 AACCACAAGGAGACCCGGC 62.192 63.158 0.00 0.00 38.69 6.13
296 307 4.410400 CCACAAGGAGACCCGGCC 62.410 72.222 0.00 0.00 36.89 6.13
297 308 4.760047 CACAAGGAGACCCGGCCG 62.760 72.222 21.04 21.04 37.58 6.13
315 326 4.201951 CCGTATGGCGCAGAAGTT 57.798 55.556 10.83 0.00 39.71 2.66
316 327 3.355816 CCGTATGGCGCAGAAGTTA 57.644 52.632 10.83 0.00 39.71 2.24
317 328 1.865865 CCGTATGGCGCAGAAGTTAT 58.134 50.000 10.83 0.00 39.71 1.89
318 329 1.526887 CCGTATGGCGCAGAAGTTATG 59.473 52.381 10.83 0.00 39.71 1.90
319 330 2.201732 CGTATGGCGCAGAAGTTATGT 58.798 47.619 10.83 0.00 0.00 2.29
320 331 2.218759 CGTATGGCGCAGAAGTTATGTC 59.781 50.000 10.83 0.00 0.00 3.06
321 332 2.698855 ATGGCGCAGAAGTTATGTCT 57.301 45.000 10.83 0.00 0.00 3.41
322 333 2.010145 TGGCGCAGAAGTTATGTCTC 57.990 50.000 10.83 0.00 0.00 3.36
323 334 0.924090 GGCGCAGAAGTTATGTCTCG 59.076 55.000 10.83 0.00 0.00 4.04
324 335 0.299003 GCGCAGAAGTTATGTCTCGC 59.701 55.000 0.30 5.47 35.84 5.03
325 336 1.914634 CGCAGAAGTTATGTCTCGCT 58.085 50.000 0.00 0.00 0.00 4.93
326 337 2.263077 CGCAGAAGTTATGTCTCGCTT 58.737 47.619 0.00 0.00 0.00 4.68
327 338 2.028523 CGCAGAAGTTATGTCTCGCTTG 59.971 50.000 0.00 0.00 0.00 4.01
328 339 2.349886 GCAGAAGTTATGTCTCGCTTGG 59.650 50.000 0.00 0.00 0.00 3.61
329 340 2.932614 CAGAAGTTATGTCTCGCTTGGG 59.067 50.000 0.00 0.00 0.00 4.12
330 341 1.666189 GAAGTTATGTCTCGCTTGGGC 59.334 52.381 0.00 0.00 0.00 5.36
331 342 0.613260 AGTTATGTCTCGCTTGGGCA 59.387 50.000 0.00 0.00 38.60 5.36
332 343 1.210478 AGTTATGTCTCGCTTGGGCAT 59.790 47.619 0.00 0.00 38.60 4.40
333 344 2.017049 GTTATGTCTCGCTTGGGCATT 58.983 47.619 0.00 0.00 38.60 3.56
334 345 1.667236 TATGTCTCGCTTGGGCATTG 58.333 50.000 0.00 0.00 38.60 2.82
335 346 1.033746 ATGTCTCGCTTGGGCATTGG 61.034 55.000 0.00 0.00 38.60 3.16
336 347 2.751436 TCTCGCTTGGGCATTGGC 60.751 61.111 0.70 0.70 38.60 4.52
346 357 3.364441 GCATTGGCCACACTCGCA 61.364 61.111 3.88 0.00 0.00 5.10
347 358 2.703798 GCATTGGCCACACTCGCAT 61.704 57.895 3.88 0.00 0.00 4.73
348 359 1.885157 CATTGGCCACACTCGCATT 59.115 52.632 3.88 0.00 0.00 3.56
349 360 1.093972 CATTGGCCACACTCGCATTA 58.906 50.000 3.88 0.00 0.00 1.90
350 361 1.064505 CATTGGCCACACTCGCATTAG 59.935 52.381 3.88 0.00 0.00 1.73
351 362 0.676466 TTGGCCACACTCGCATTAGG 60.676 55.000 3.88 0.00 0.00 2.69
352 363 1.819632 GGCCACACTCGCATTAGGG 60.820 63.158 0.00 0.00 0.00 3.53
353 364 1.819632 GCCACACTCGCATTAGGGG 60.820 63.158 0.00 0.00 0.00 4.79
354 365 1.602237 CCACACTCGCATTAGGGGT 59.398 57.895 0.00 0.00 0.00 4.95
355 366 0.744414 CCACACTCGCATTAGGGGTG 60.744 60.000 0.00 0.00 36.05 4.61
356 367 0.744414 CACACTCGCATTAGGGGTGG 60.744 60.000 0.00 0.00 35.06 4.61
357 368 1.198759 ACACTCGCATTAGGGGTGGT 61.199 55.000 0.00 0.00 35.06 4.16
358 369 0.462047 CACTCGCATTAGGGGTGGTC 60.462 60.000 0.00 0.00 0.00 4.02
359 370 1.146263 CTCGCATTAGGGGTGGTCC 59.854 63.158 0.00 0.00 0.00 4.46
360 371 1.613928 TCGCATTAGGGGTGGTCCA 60.614 57.895 0.00 0.00 37.22 4.02
361 372 1.153168 CGCATTAGGGGTGGTCCAG 60.153 63.158 0.00 0.00 37.22 3.86
362 373 1.910580 CGCATTAGGGGTGGTCCAGT 61.911 60.000 0.00 0.00 37.22 4.00
363 374 1.209621 GCATTAGGGGTGGTCCAGTA 58.790 55.000 0.00 0.00 37.22 2.74
364 375 1.562475 GCATTAGGGGTGGTCCAGTAA 59.438 52.381 0.00 0.00 37.22 2.24
365 376 2.025699 GCATTAGGGGTGGTCCAGTAAA 60.026 50.000 0.00 0.00 37.22 2.01
366 377 3.886123 CATTAGGGGTGGTCCAGTAAAG 58.114 50.000 0.00 0.00 37.22 1.85
367 378 2.727429 TAGGGGTGGTCCAGTAAAGT 57.273 50.000 0.00 0.00 37.22 2.66
368 379 1.064825 AGGGGTGGTCCAGTAAAGTG 58.935 55.000 0.00 0.00 37.22 3.16
369 380 0.037734 GGGGTGGTCCAGTAAAGTGG 59.962 60.000 0.00 0.00 39.19 4.00
370 381 0.769247 GGGTGGTCCAGTAAAGTGGT 59.231 55.000 3.80 0.00 38.88 4.16
371 382 1.144298 GGGTGGTCCAGTAAAGTGGTT 59.856 52.381 3.80 0.00 38.88 3.67
372 383 2.423803 GGGTGGTCCAGTAAAGTGGTTT 60.424 50.000 3.80 0.00 38.88 3.27
373 384 3.293337 GGTGGTCCAGTAAAGTGGTTTT 58.707 45.455 3.80 0.00 38.88 2.43
374 385 3.067601 GGTGGTCCAGTAAAGTGGTTTTG 59.932 47.826 3.80 0.00 38.88 2.44
375 386 3.067601 GTGGTCCAGTAAAGTGGTTTTGG 59.932 47.826 3.80 0.00 38.88 3.28
376 387 3.053544 TGGTCCAGTAAAGTGGTTTTGGA 60.054 43.478 3.80 0.00 38.88 3.53
377 388 3.955551 GGTCCAGTAAAGTGGTTTTGGAA 59.044 43.478 3.80 0.00 38.88 3.53
378 389 4.403113 GGTCCAGTAAAGTGGTTTTGGAAA 59.597 41.667 3.80 0.00 38.88 3.13
379 390 5.451381 GGTCCAGTAAAGTGGTTTTGGAAAG 60.451 44.000 3.80 0.00 38.88 2.62
380 391 4.647399 TCCAGTAAAGTGGTTTTGGAAAGG 59.353 41.667 3.80 0.00 38.88 3.11
381 392 4.404394 CCAGTAAAGTGGTTTTGGAAAGGT 59.596 41.667 0.00 0.00 32.32 3.50
382 393 5.105106 CCAGTAAAGTGGTTTTGGAAAGGTT 60.105 40.000 0.00 0.00 32.32 3.50
383 394 6.403049 CAGTAAAGTGGTTTTGGAAAGGTTT 58.597 36.000 0.00 0.00 0.00 3.27
384 395 6.876789 CAGTAAAGTGGTTTTGGAAAGGTTTT 59.123 34.615 0.00 0.00 0.00 2.43
385 396 6.876789 AGTAAAGTGGTTTTGGAAAGGTTTTG 59.123 34.615 0.00 0.00 0.00 2.44
386 397 4.901197 AGTGGTTTTGGAAAGGTTTTGT 57.099 36.364 0.00 0.00 0.00 2.83
387 398 6.361768 AAGTGGTTTTGGAAAGGTTTTGTA 57.638 33.333 0.00 0.00 0.00 2.41
388 399 5.972935 AGTGGTTTTGGAAAGGTTTTGTAG 58.027 37.500 0.00 0.00 0.00 2.74
389 400 5.717654 AGTGGTTTTGGAAAGGTTTTGTAGA 59.282 36.000 0.00 0.00 0.00 2.59
390 401 6.040247 GTGGTTTTGGAAAGGTTTTGTAGAG 58.960 40.000 0.00 0.00 0.00 2.43
391 402 5.717654 TGGTTTTGGAAAGGTTTTGTAGAGT 59.282 36.000 0.00 0.00 0.00 3.24
392 403 6.040247 GGTTTTGGAAAGGTTTTGTAGAGTG 58.960 40.000 0.00 0.00 0.00 3.51
393 404 5.845391 TTTGGAAAGGTTTTGTAGAGTGG 57.155 39.130 0.00 0.00 0.00 4.00
394 405 4.513406 TGGAAAGGTTTTGTAGAGTGGT 57.487 40.909 0.00 0.00 0.00 4.16
395 406 4.862371 TGGAAAGGTTTTGTAGAGTGGTT 58.138 39.130 0.00 0.00 0.00 3.67
396 407 5.265989 TGGAAAGGTTTTGTAGAGTGGTTT 58.734 37.500 0.00 0.00 0.00 3.27
397 408 5.717654 TGGAAAGGTTTTGTAGAGTGGTTTT 59.282 36.000 0.00 0.00 0.00 2.43
398 409 6.890814 TGGAAAGGTTTTGTAGAGTGGTTTTA 59.109 34.615 0.00 0.00 0.00 1.52
399 410 7.067737 TGGAAAGGTTTTGTAGAGTGGTTTTAG 59.932 37.037 0.00 0.00 0.00 1.85
400 411 7.283807 GGAAAGGTTTTGTAGAGTGGTTTTAGA 59.716 37.037 0.00 0.00 0.00 2.10
401 412 8.584063 AAAGGTTTTGTAGAGTGGTTTTAGAA 57.416 30.769 0.00 0.00 0.00 2.10
402 413 7.563888 AGGTTTTGTAGAGTGGTTTTAGAAC 57.436 36.000 0.00 0.00 34.96 3.01
412 423 0.794473 GTTTTAGAACCTCCCGTGCG 59.206 55.000 0.00 0.00 0.00 5.34
413 424 0.393820 TTTTAGAACCTCCCGTGCGT 59.606 50.000 0.00 0.00 0.00 5.24
414 425 0.393820 TTTAGAACCTCCCGTGCGTT 59.606 50.000 0.00 0.00 0.00 4.84
415 426 0.393820 TTAGAACCTCCCGTGCGTTT 59.606 50.000 0.00 0.00 0.00 3.60
416 427 0.393820 TAGAACCTCCCGTGCGTTTT 59.606 50.000 0.00 0.00 0.00 2.43
417 428 0.464916 AGAACCTCCCGTGCGTTTTT 60.465 50.000 0.00 0.00 0.00 1.94
511 522 9.829507 TTTTTCTTTTGTCCAAATACATGTCAT 57.170 25.926 0.00 0.00 0.00 3.06
512 523 9.474920 TTTTCTTTTGTCCAAATACATGTCATC 57.525 29.630 0.00 0.00 0.00 2.92
513 524 7.757941 TCTTTTGTCCAAATACATGTCATCA 57.242 32.000 0.00 0.00 0.00 3.07
514 525 8.352137 TCTTTTGTCCAAATACATGTCATCAT 57.648 30.769 0.00 0.00 34.21 2.45
515 526 8.805175 TCTTTTGTCCAAATACATGTCATCATT 58.195 29.630 0.00 0.00 31.15 2.57
516 527 9.426837 CTTTTGTCCAAATACATGTCATCATTT 57.573 29.630 0.00 0.00 31.15 2.32
517 528 9.775854 TTTTGTCCAAATACATGTCATCATTTT 57.224 25.926 0.00 0.00 31.15 1.82
518 529 8.760103 TTGTCCAAATACATGTCATCATTTTG 57.240 30.769 0.00 0.00 33.05 2.44
519 530 8.120140 TGTCCAAATACATGTCATCATTTTGA 57.880 30.769 0.00 1.60 34.15 2.69
520 531 8.583296 TGTCCAAATACATGTCATCATTTTGAA 58.417 29.630 0.00 0.00 34.15 2.69
521 532 9.590451 GTCCAAATACATGTCATCATTTTGAAT 57.410 29.630 0.00 0.00 34.15 2.57
548 559 8.427012 ACAAGTTATACGTTGTTTGTATACACG 58.573 33.333 4.68 8.12 35.19 4.49
549 560 8.427012 CAAGTTATACGTTGTTTGTATACACGT 58.573 33.333 18.59 18.59 38.41 4.49
550 561 7.941865 AGTTATACGTTGTTTGTATACACGTG 58.058 34.615 21.79 15.48 36.85 4.49
551 562 7.807433 AGTTATACGTTGTTTGTATACACGTGA 59.193 33.333 25.01 6.34 36.85 4.35
552 563 8.423973 GTTATACGTTGTTTGTATACACGTGAA 58.576 33.333 25.01 15.07 36.85 3.18
553 564 5.715429 ACGTTGTTTGTATACACGTGAAA 57.285 34.783 25.01 9.00 35.79 2.69
554 565 5.491973 ACGTTGTTTGTATACACGTGAAAC 58.508 37.500 25.01 20.65 35.79 2.78
555 566 5.063186 ACGTTGTTTGTATACACGTGAAACA 59.937 36.000 25.01 22.91 35.79 2.83
556 567 6.130723 CGTTGTTTGTATACACGTGAAACAT 58.869 36.000 24.38 14.31 36.64 2.71
557 568 6.629649 CGTTGTTTGTATACACGTGAAACATT 59.370 34.615 24.38 6.37 36.64 2.71
558 569 7.164498 CGTTGTTTGTATACACGTGAAACATTT 59.836 33.333 24.38 5.72 36.64 2.32
559 570 8.800031 GTTGTTTGTATACACGTGAAACATTTT 58.200 29.630 24.38 5.07 36.64 1.82
560 571 8.912787 TGTTTGTATACACGTGAAACATTTTT 57.087 26.923 25.01 0.00 35.74 1.94
605 616 9.774742 GTCAAATACATGTTTGATACTTCTTCC 57.225 33.333 14.41 0.00 46.33 3.46
606 617 9.513906 TCAAATACATGTTTGATACTTCTTCCA 57.486 29.630 2.30 0.00 41.70 3.53
609 620 8.862325 ATACATGTTTGATACTTCTTCCAACA 57.138 30.769 2.30 0.00 0.00 3.33
610 621 6.970484 ACATGTTTGATACTTCTTCCAACAC 58.030 36.000 0.00 0.00 0.00 3.32
611 622 6.545666 ACATGTTTGATACTTCTTCCAACACA 59.454 34.615 0.00 0.00 0.00 3.72
612 623 7.231317 ACATGTTTGATACTTCTTCCAACACAT 59.769 33.333 0.00 0.00 0.00 3.21
613 624 8.729756 CATGTTTGATACTTCTTCCAACACATA 58.270 33.333 0.00 0.00 0.00 2.29
614 625 8.094798 TGTTTGATACTTCTTCCAACACATAC 57.905 34.615 0.00 0.00 0.00 2.39
615 626 7.936847 TGTTTGATACTTCTTCCAACACATACT 59.063 33.333 0.00 0.00 0.00 2.12
616 627 9.431887 GTTTGATACTTCTTCCAACACATACTA 57.568 33.333 0.00 0.00 0.00 1.82
618 629 9.653287 TTGATACTTCTTCCAACACATACTAAG 57.347 33.333 0.00 0.00 0.00 2.18
619 630 7.764443 TGATACTTCTTCCAACACATACTAAGC 59.236 37.037 0.00 0.00 0.00 3.09
620 631 5.865085 ACTTCTTCCAACACATACTAAGCA 58.135 37.500 0.00 0.00 0.00 3.91
621 632 6.296026 ACTTCTTCCAACACATACTAAGCAA 58.704 36.000 0.00 0.00 0.00 3.91
622 633 6.942576 ACTTCTTCCAACACATACTAAGCAAT 59.057 34.615 0.00 0.00 0.00 3.56
623 634 7.448469 ACTTCTTCCAACACATACTAAGCAATT 59.552 33.333 0.00 0.00 0.00 2.32
624 635 7.759489 TCTTCCAACACATACTAAGCAATTT 57.241 32.000 0.00 0.00 0.00 1.82
625 636 7.816640 TCTTCCAACACATACTAAGCAATTTC 58.183 34.615 0.00 0.00 0.00 2.17
626 637 7.446931 TCTTCCAACACATACTAAGCAATTTCA 59.553 33.333 0.00 0.00 0.00 2.69
627 638 7.517614 TCCAACACATACTAAGCAATTTCAA 57.482 32.000 0.00 0.00 0.00 2.69
628 639 7.946207 TCCAACACATACTAAGCAATTTCAAA 58.054 30.769 0.00 0.00 0.00 2.69
629 640 7.865385 TCCAACACATACTAAGCAATTTCAAAC 59.135 33.333 0.00 0.00 0.00 2.93
630 641 7.651304 CCAACACATACTAAGCAATTTCAAACA 59.349 33.333 0.00 0.00 0.00 2.83
631 642 8.479280 CAACACATACTAAGCAATTTCAAACAC 58.521 33.333 0.00 0.00 0.00 3.32
632 643 7.711846 ACACATACTAAGCAATTTCAAACACA 58.288 30.769 0.00 0.00 0.00 3.72
633 644 7.647715 ACACATACTAAGCAATTTCAAACACAC 59.352 33.333 0.00 0.00 0.00 3.82
634 645 7.647318 CACATACTAAGCAATTTCAAACACACA 59.353 33.333 0.00 0.00 0.00 3.72
635 646 8.359642 ACATACTAAGCAATTTCAAACACACAT 58.640 29.630 0.00 0.00 0.00 3.21
636 647 9.195411 CATACTAAGCAATTTCAAACACACATT 57.805 29.630 0.00 0.00 0.00 2.71
637 648 7.698836 ACTAAGCAATTTCAAACACACATTC 57.301 32.000 0.00 0.00 0.00 2.67
638 649 7.264221 ACTAAGCAATTTCAAACACACATTCA 58.736 30.769 0.00 0.00 0.00 2.57
639 650 6.981762 AAGCAATTTCAAACACACATTCAA 57.018 29.167 0.00 0.00 0.00 2.69
640 651 7.556733 AAGCAATTTCAAACACACATTCAAT 57.443 28.000 0.00 0.00 0.00 2.57
641 652 7.556733 AGCAATTTCAAACACACATTCAATT 57.443 28.000 0.00 0.00 0.00 2.32
642 653 7.987649 AGCAATTTCAAACACACATTCAATTT 58.012 26.923 0.00 0.00 0.00 1.82
643 654 8.460428 AGCAATTTCAAACACACATTCAATTTT 58.540 25.926 0.00 0.00 0.00 1.82
644 655 9.074443 GCAATTTCAAACACACATTCAATTTTT 57.926 25.926 0.00 0.00 0.00 1.94
648 659 9.823098 TTTCAAACACACATTCAATTTTTCTTG 57.177 25.926 0.00 0.00 0.00 3.02
649 660 8.768957 TCAAACACACATTCAATTTTTCTTGA 57.231 26.923 0.00 0.00 33.42 3.02
650 661 9.212641 TCAAACACACATTCAATTTTTCTTGAA 57.787 25.926 2.11 2.11 46.13 2.69
651 662 9.264782 CAAACACACATTCAATTTTTCTTGAAC 57.735 29.630 1.68 0.00 45.21 3.18
652 663 7.538303 ACACACATTCAATTTTTCTTGAACC 57.462 32.000 1.68 0.00 45.21 3.62
653 664 7.102346 ACACACATTCAATTTTTCTTGAACCA 58.898 30.769 1.68 0.00 45.21 3.67
654 665 7.769970 ACACACATTCAATTTTTCTTGAACCAT 59.230 29.630 1.68 0.00 45.21 3.55
655 666 9.258826 CACACATTCAATTTTTCTTGAACCATA 57.741 29.630 1.68 0.00 45.21 2.74
656 667 9.829507 ACACATTCAATTTTTCTTGAACCATAA 57.170 25.926 1.68 0.00 45.21 1.90
658 669 9.829507 ACATTCAATTTTTCTTGAACCATAACA 57.170 25.926 1.68 0.00 45.21 2.41
662 673 9.658799 TCAATTTTTCTTGAACCATAACAAACA 57.341 25.926 0.00 0.00 32.35 2.83
666 677 9.883142 TTTTTCTTGAACCATAACAAACATTCT 57.117 25.926 0.00 0.00 0.00 2.40
667 678 9.883142 TTTTCTTGAACCATAACAAACATTCTT 57.117 25.926 0.00 0.00 0.00 2.52
668 679 9.883142 TTTCTTGAACCATAACAAACATTCTTT 57.117 25.926 0.00 0.00 0.00 2.52
669 680 9.883142 TTCTTGAACCATAACAAACATTCTTTT 57.117 25.926 0.00 0.00 0.00 2.27
670 681 9.528018 TCTTGAACCATAACAAACATTCTTTTC 57.472 29.630 0.00 0.00 0.00 2.29
671 682 9.311916 CTTGAACCATAACAAACATTCTTTTCA 57.688 29.630 0.00 0.00 0.00 2.69
672 683 8.641499 TGAACCATAACAAACATTCTTTTCAC 57.359 30.769 0.00 0.00 0.00 3.18
673 684 8.253810 TGAACCATAACAAACATTCTTTTCACA 58.746 29.630 0.00 0.00 0.00 3.58
674 685 9.092876 GAACCATAACAAACATTCTTTTCACAA 57.907 29.630 0.00 0.00 0.00 3.33
675 686 9.612066 AACCATAACAAACATTCTTTTCACAAT 57.388 25.926 0.00 0.00 0.00 2.71
676 687 9.612066 ACCATAACAAACATTCTTTTCACAATT 57.388 25.926 0.00 0.00 0.00 2.32
709 720 9.947433 AATTTCAGGAGCATATTTTTGAAATGA 57.053 25.926 10.04 0.00 41.66 2.57
710 721 8.991243 TTTCAGGAGCATATTTTTGAAATGAG 57.009 30.769 0.00 0.00 31.72 2.90
711 722 7.707624 TCAGGAGCATATTTTTGAAATGAGT 57.292 32.000 0.00 0.00 0.00 3.41
712 723 7.541162 TCAGGAGCATATTTTTGAAATGAGTG 58.459 34.615 0.00 0.00 0.00 3.51
713 724 7.394077 TCAGGAGCATATTTTTGAAATGAGTGA 59.606 33.333 0.00 0.00 0.00 3.41
714 725 8.030692 CAGGAGCATATTTTTGAAATGAGTGAA 58.969 33.333 0.00 0.00 0.00 3.18
715 726 8.031277 AGGAGCATATTTTTGAAATGAGTGAAC 58.969 33.333 0.00 0.00 0.00 3.18
716 727 7.814107 GGAGCATATTTTTGAAATGAGTGAACA 59.186 33.333 0.00 0.00 0.00 3.18
717 728 9.362539 GAGCATATTTTTGAAATGAGTGAACAT 57.637 29.630 0.00 0.00 0.00 2.71
718 729 9.715121 AGCATATTTTTGAAATGAGTGAACATT 57.285 25.926 0.00 0.00 41.43 2.71
723 734 8.783833 TTTTTGAAATGAGTGAACATTTTCCA 57.216 26.923 0.00 0.00 46.18 3.53
724 735 8.783833 TTTTGAAATGAGTGAACATTTTCCAA 57.216 26.923 0.00 0.00 46.18 3.53
725 736 8.783833 TTTGAAATGAGTGAACATTTTCCAAA 57.216 26.923 0.00 0.00 46.18 3.28
726 737 8.961294 TTGAAATGAGTGAACATTTTCCAAAT 57.039 26.923 0.00 0.00 46.18 2.32
727 738 8.367943 TGAAATGAGTGAACATTTTCCAAATG 57.632 30.769 7.52 7.52 46.18 2.32
728 739 7.986320 TGAAATGAGTGAACATTTTCCAAATGT 59.014 29.630 8.71 8.71 46.18 2.71
729 740 7.718272 AATGAGTGAACATTTTCCAAATGTG 57.282 32.000 14.11 0.00 40.43 3.21
730 741 6.462552 TGAGTGAACATTTTCCAAATGTGA 57.537 33.333 14.11 3.69 40.43 3.58
731 742 7.053316 TGAGTGAACATTTTCCAAATGTGAT 57.947 32.000 14.11 1.74 40.43 3.06
732 743 6.924612 TGAGTGAACATTTTCCAAATGTGATG 59.075 34.615 14.11 0.00 40.43 3.07
733 744 7.053316 AGTGAACATTTTCCAAATGTGATGA 57.947 32.000 14.11 0.00 40.43 2.92
734 745 6.925165 AGTGAACATTTTCCAAATGTGATGAC 59.075 34.615 14.11 5.81 40.43 3.06
735 746 6.700960 GTGAACATTTTCCAAATGTGATGACA 59.299 34.615 14.11 8.22 40.43 3.58
736 747 7.224362 GTGAACATTTTCCAAATGTGATGACAA 59.776 33.333 14.11 0.00 40.43 3.18
737 748 7.767659 TGAACATTTTCCAAATGTGATGACAAA 59.232 29.630 14.11 0.00 40.43 2.83
738 749 8.503458 AACATTTTCCAAATGTGATGACAAAA 57.497 26.923 14.11 0.00 40.43 2.44
739 750 8.503458 ACATTTTCCAAATGTGATGACAAAAA 57.497 26.923 12.91 0.00 39.22 1.94
740 751 8.397148 ACATTTTCCAAATGTGATGACAAAAAC 58.603 29.630 12.91 0.00 39.22 2.43
741 752 8.614346 CATTTTCCAAATGTGATGACAAAAACT 58.386 29.630 0.00 0.00 35.11 2.66
742 753 8.558973 TTTTCCAAATGTGATGACAAAAACTT 57.441 26.923 0.00 0.00 35.11 2.66
743 754 9.658799 TTTTCCAAATGTGATGACAAAAACTTA 57.341 25.926 0.00 0.00 35.11 2.24
744 755 9.829507 TTTCCAAATGTGATGACAAAAACTTAT 57.170 25.926 0.00 0.00 35.11 1.73
745 756 8.815141 TCCAAATGTGATGACAAAAACTTATG 57.185 30.769 0.00 0.00 35.11 1.90
746 757 8.637099 TCCAAATGTGATGACAAAAACTTATGA 58.363 29.630 0.00 0.00 35.11 2.15
747 758 9.258826 CCAAATGTGATGACAAAAACTTATGAA 57.741 29.630 0.00 0.00 35.11 2.57
778 789 9.829507 ACAAAACATTTTCCTTTCAATATGTCA 57.170 25.926 0.00 0.00 0.00 3.58
845 857 9.661563 ATTTATCACAGGAATCGTACAACTTTA 57.338 29.630 0.00 0.00 0.00 1.85
874 887 6.392842 TCCTATGGATATTTTCCTTTGGAGGT 59.607 38.462 7.66 0.00 43.71 3.85
1193 1234 0.478072 ATCCACACAAGGGCTTGACA 59.522 50.000 0.00 0.00 42.93 3.58
1831 2245 6.275335 CCCTAATATGCACTTTTCATGTTGG 58.725 40.000 0.00 0.00 0.00 3.77
2131 2545 1.070105 GTGGTGGCGCCCGATAATA 59.930 57.895 26.77 0.00 36.04 0.98
2335 2769 0.747255 GACGCTATGCTCAGGGAAGA 59.253 55.000 8.75 0.00 33.01 2.87
2515 2991 7.496529 TGAAGAGGATAGTGAAAACACAAAG 57.503 36.000 0.00 0.00 0.00 2.77
2560 3036 0.467290 GTCAAGTGGAGGCAAACCCA 60.467 55.000 0.00 0.00 36.11 4.51
2631 3107 0.109597 CCAATTTCCTCACAGCACGC 60.110 55.000 0.00 0.00 0.00 5.34
3324 3809 9.190858 TGCAGTGTTTGACAAAAATAATCATAC 57.809 29.630 1.27 0.00 0.00 2.39
3353 3865 7.606456 AGTGGAGTACAGTACAACCAAATAATG 59.394 37.037 22.74 0.00 38.42 1.90
3509 4022 5.596836 TTTTGTATTTGGCATCTCCATCC 57.403 39.130 0.00 0.00 46.04 3.51
3658 4171 7.174772 TGTGTCAATATCAAACATTGTAGCTGT 59.825 33.333 0.00 0.00 35.36 4.40
3871 4384 8.397906 CGCATCTACAAGATAAAATTTTCCAGA 58.602 33.333 6.72 1.90 32.12 3.86
3974 4487 3.725740 GCACAAACTTCATGTCAAAGTCG 59.274 43.478 0.00 0.00 35.96 4.18
4068 4581 3.650942 AGTCATGGGAAAGTGAGTACCAA 59.349 43.478 0.00 0.00 34.45 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
1 2 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
2 3 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
3 4 1.755380 CTACTCCCTCCGTTCGGAAAT 59.245 52.381 14.79 2.39 33.41 2.17
4 5 1.180029 CTACTCCCTCCGTTCGGAAA 58.820 55.000 14.79 3.49 33.41 3.13
5 6 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
6 7 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
7 8 0.969409 AACCTACTCCCTCCGTTCGG 60.969 60.000 4.74 4.74 0.00 4.30
8 9 0.455005 GAACCTACTCCCTCCGTTCG 59.545 60.000 0.00 0.00 0.00 3.95
9 10 0.822811 GGAACCTACTCCCTCCGTTC 59.177 60.000 0.00 0.00 33.63 3.95
10 11 0.115745 TGGAACCTACTCCCTCCGTT 59.884 55.000 0.00 0.00 34.22 4.44
11 12 0.115745 TTGGAACCTACTCCCTCCGT 59.884 55.000 0.00 0.00 34.22 4.69
12 13 0.824759 CTTGGAACCTACTCCCTCCG 59.175 60.000 0.00 0.00 34.22 4.63
13 14 1.832366 GTCTTGGAACCTACTCCCTCC 59.168 57.143 0.00 0.00 34.22 4.30
14 15 2.498078 CTGTCTTGGAACCTACTCCCTC 59.502 54.545 0.00 0.00 34.22 4.30
15 16 2.541466 CTGTCTTGGAACCTACTCCCT 58.459 52.381 0.00 0.00 34.22 4.20
16 17 1.066071 GCTGTCTTGGAACCTACTCCC 60.066 57.143 0.00 0.00 34.22 4.30
17 18 1.623811 TGCTGTCTTGGAACCTACTCC 59.376 52.381 0.00 0.00 35.88 3.85
18 19 2.354203 CCTGCTGTCTTGGAACCTACTC 60.354 54.545 0.00 0.00 0.00 2.59
19 20 1.625818 CCTGCTGTCTTGGAACCTACT 59.374 52.381 0.00 0.00 0.00 2.57
20 21 1.946283 GCCTGCTGTCTTGGAACCTAC 60.946 57.143 0.00 0.00 0.00 3.18
21 22 0.324943 GCCTGCTGTCTTGGAACCTA 59.675 55.000 0.00 0.00 0.00 3.08
22 23 1.073897 GCCTGCTGTCTTGGAACCT 59.926 57.895 0.00 0.00 0.00 3.50
23 24 1.228245 TGCCTGCTGTCTTGGAACC 60.228 57.895 0.00 0.00 0.00 3.62
24 25 0.250467 TCTGCCTGCTGTCTTGGAAC 60.250 55.000 0.00 0.00 0.00 3.62
25 26 0.694771 ATCTGCCTGCTGTCTTGGAA 59.305 50.000 0.00 0.00 0.00 3.53
26 27 0.035725 CATCTGCCTGCTGTCTTGGA 60.036 55.000 0.00 0.00 0.00 3.53
27 28 1.030488 CCATCTGCCTGCTGTCTTGG 61.030 60.000 0.00 0.00 0.00 3.61
28 29 1.654954 GCCATCTGCCTGCTGTCTTG 61.655 60.000 0.00 0.00 0.00 3.02
29 30 1.378250 GCCATCTGCCTGCTGTCTT 60.378 57.895 0.00 0.00 0.00 3.01
30 31 2.271497 GCCATCTGCCTGCTGTCT 59.729 61.111 0.00 0.00 0.00 3.41
39 40 1.527844 GGTCCATGAGGCCATCTGC 60.528 63.158 5.01 0.00 40.16 4.26
40 41 0.477204 ATGGTCCATGAGGCCATCTG 59.523 55.000 12.86 0.00 43.75 2.90
41 42 0.477204 CATGGTCCATGAGGCCATCT 59.523 55.000 25.39 0.00 44.67 2.90
42 43 0.475475 TCATGGTCCATGAGGCCATC 59.525 55.000 27.61 0.00 44.60 3.51
43 44 2.636644 TCATGGTCCATGAGGCCAT 58.363 52.632 27.61 12.86 44.60 4.40
44 45 4.167720 TCATGGTCCATGAGGCCA 57.832 55.556 27.61 8.19 44.60 5.36
65 66 4.578928 ACTTGTTCAAGTGCTTATTCCGTT 59.421 37.500 15.98 0.00 0.00 4.44
134 145 3.089284 AGGACGGAATTCAAATGTTCCC 58.911 45.455 7.93 0.00 40.61 3.97
150 161 2.503375 CCGACCGAAACGAGGACG 60.503 66.667 0.00 0.00 44.16 4.79
175 186 1.730451 GGAGCTAGGAGTGGTCGAGC 61.730 65.000 7.89 7.89 34.14 5.03
177 188 1.451567 CGGAGCTAGGAGTGGTCGA 60.452 63.158 0.00 0.00 33.26 4.20
194 205 1.206132 TGCCTAACCTGTGTATCCACG 59.794 52.381 0.00 0.00 44.92 4.94
199 210 2.158755 GCCATCTGCCTAACCTGTGTAT 60.159 50.000 0.00 0.00 0.00 2.29
200 211 1.209504 GCCATCTGCCTAACCTGTGTA 59.790 52.381 0.00 0.00 0.00 2.90
201 212 0.035056 GCCATCTGCCTAACCTGTGT 60.035 55.000 0.00 0.00 0.00 3.72
202 213 2.785868 GCCATCTGCCTAACCTGTG 58.214 57.895 0.00 0.00 0.00 3.66
212 223 3.565063 ACAATTTTGTTTTGGCCATCTGC 59.435 39.130 6.09 0.00 38.47 4.26
213 224 4.084433 CGACAATTTTGTTTTGGCCATCTG 60.084 41.667 6.09 0.00 42.43 2.90
214 225 4.057432 CGACAATTTTGTTTTGGCCATCT 58.943 39.130 6.09 0.00 42.43 2.90
215 226 3.807071 ACGACAATTTTGTTTTGGCCATC 59.193 39.130 6.09 0.54 42.43 3.51
216 227 3.802866 ACGACAATTTTGTTTTGGCCAT 58.197 36.364 6.09 0.00 42.43 4.40
217 228 3.252974 ACGACAATTTTGTTTTGGCCA 57.747 38.095 0.00 0.00 42.43 5.36
218 229 3.787146 GCAACGACAATTTTGTTTTGGCC 60.787 43.478 15.11 0.00 42.43 5.36
219 230 3.350043 GCAACGACAATTTTGTTTTGGC 58.650 40.909 15.11 7.58 42.43 4.52
220 231 3.304559 TCGCAACGACAATTTTGTTTTGG 59.695 39.130 15.11 9.03 42.43 3.28
221 232 4.491554 TCGCAACGACAATTTTGTTTTG 57.508 36.364 11.51 11.51 42.43 2.44
234 245 1.447140 GTATGCCCAGTCGCAACGA 60.447 57.895 0.00 0.00 43.24 3.85
235 246 1.295357 TTGTATGCCCAGTCGCAACG 61.295 55.000 0.00 0.00 43.24 4.10
236 247 0.447801 CTTGTATGCCCAGTCGCAAC 59.552 55.000 0.00 0.00 43.24 4.17
237 248 1.305219 GCTTGTATGCCCAGTCGCAA 61.305 55.000 0.00 0.00 43.24 4.85
238 249 1.745115 GCTTGTATGCCCAGTCGCA 60.745 57.895 0.00 0.00 44.35 5.10
239 250 2.813179 CGCTTGTATGCCCAGTCGC 61.813 63.158 0.00 0.00 0.00 5.19
240 251 1.148157 CTCGCTTGTATGCCCAGTCG 61.148 60.000 0.00 0.00 0.00 4.18
241 252 1.432270 GCTCGCTTGTATGCCCAGTC 61.432 60.000 0.00 0.00 0.00 3.51
242 253 1.450312 GCTCGCTTGTATGCCCAGT 60.450 57.895 0.00 0.00 0.00 4.00
243 254 2.182842 GGCTCGCTTGTATGCCCAG 61.183 63.158 0.00 0.00 39.49 4.45
244 255 2.124736 GGCTCGCTTGTATGCCCA 60.125 61.111 0.00 0.00 39.49 5.36
246 257 1.748879 TTGGGCTCGCTTGTATGCC 60.749 57.895 0.00 0.00 44.22 4.40
247 258 1.305219 TGTTGGGCTCGCTTGTATGC 61.305 55.000 0.00 0.00 0.00 3.14
248 259 1.064505 CATGTTGGGCTCGCTTGTATG 59.935 52.381 0.00 0.00 0.00 2.39
249 260 1.382522 CATGTTGGGCTCGCTTGTAT 58.617 50.000 0.00 0.00 0.00 2.29
250 261 0.676466 CCATGTTGGGCTCGCTTGTA 60.676 55.000 0.00 0.00 32.67 2.41
251 262 1.973281 CCATGTTGGGCTCGCTTGT 60.973 57.895 0.00 0.00 32.67 3.16
252 263 2.879907 CCATGTTGGGCTCGCTTG 59.120 61.111 0.00 0.00 32.67 4.01
268 279 2.697147 TCCTTGTGGTTGGCAGAGCC 62.697 60.000 0.00 0.00 41.09 4.70
269 280 1.228245 TCCTTGTGGTTGGCAGAGC 60.228 57.895 0.00 0.00 34.23 4.09
270 281 0.397941 TCTCCTTGTGGTTGGCAGAG 59.602 55.000 0.00 0.00 34.23 3.35
271 282 0.108585 GTCTCCTTGTGGTTGGCAGA 59.891 55.000 0.00 0.00 34.23 4.26
272 283 0.890996 GGTCTCCTTGTGGTTGGCAG 60.891 60.000 0.00 0.00 34.23 4.85
273 284 1.150536 GGTCTCCTTGTGGTTGGCA 59.849 57.895 0.00 0.00 34.23 4.92
274 285 1.603739 GGGTCTCCTTGTGGTTGGC 60.604 63.158 0.00 0.00 34.23 4.52
275 286 1.302511 CGGGTCTCCTTGTGGTTGG 60.303 63.158 0.00 0.00 34.23 3.77
276 287 1.302511 CCGGGTCTCCTTGTGGTTG 60.303 63.158 0.00 0.00 34.23 3.77
277 288 3.157680 CCGGGTCTCCTTGTGGTT 58.842 61.111 0.00 0.00 34.23 3.67
278 289 3.637273 GCCGGGTCTCCTTGTGGT 61.637 66.667 2.18 0.00 34.23 4.16
279 290 4.410400 GGCCGGGTCTCCTTGTGG 62.410 72.222 2.18 0.00 0.00 4.17
280 291 4.760047 CGGCCGGGTCTCCTTGTG 62.760 72.222 20.10 0.00 0.00 3.33
298 309 1.526887 CATAACTTCTGCGCCATACGG 59.473 52.381 4.18 0.00 43.93 4.02
300 311 3.458189 AGACATAACTTCTGCGCCATAC 58.542 45.455 4.18 0.00 0.00 2.39
301 312 3.717707 GAGACATAACTTCTGCGCCATA 58.282 45.455 4.18 0.00 0.00 2.74
302 313 2.555199 GAGACATAACTTCTGCGCCAT 58.445 47.619 4.18 0.00 0.00 4.40
303 314 1.735700 CGAGACATAACTTCTGCGCCA 60.736 52.381 4.18 0.00 0.00 5.69
304 315 0.924090 CGAGACATAACTTCTGCGCC 59.076 55.000 4.18 0.00 0.00 6.53
305 316 0.299003 GCGAGACATAACTTCTGCGC 59.701 55.000 0.00 0.00 34.71 6.09
306 317 1.914634 AGCGAGACATAACTTCTGCG 58.085 50.000 0.00 0.00 0.00 5.18
307 318 2.349886 CCAAGCGAGACATAACTTCTGC 59.650 50.000 0.00 0.00 0.00 4.26
308 319 2.932614 CCCAAGCGAGACATAACTTCTG 59.067 50.000 0.00 0.00 0.00 3.02
309 320 2.678190 GCCCAAGCGAGACATAACTTCT 60.678 50.000 0.00 0.00 0.00 2.85
310 321 1.666189 GCCCAAGCGAGACATAACTTC 59.334 52.381 0.00 0.00 0.00 3.01
311 322 1.003118 TGCCCAAGCGAGACATAACTT 59.997 47.619 0.00 0.00 44.31 2.66
312 323 0.613260 TGCCCAAGCGAGACATAACT 59.387 50.000 0.00 0.00 44.31 2.24
313 324 1.668419 ATGCCCAAGCGAGACATAAC 58.332 50.000 0.00 0.00 44.31 1.89
314 325 2.016318 CAATGCCCAAGCGAGACATAA 58.984 47.619 0.00 0.00 44.31 1.90
315 326 1.667236 CAATGCCCAAGCGAGACATA 58.333 50.000 0.00 0.00 44.31 2.29
316 327 1.033746 CCAATGCCCAAGCGAGACAT 61.034 55.000 0.00 0.00 44.31 3.06
317 328 1.675310 CCAATGCCCAAGCGAGACA 60.675 57.895 0.00 0.00 44.31 3.41
318 329 3.056313 GCCAATGCCCAAGCGAGAC 62.056 63.158 0.00 0.00 44.31 3.36
319 330 2.751436 GCCAATGCCCAAGCGAGA 60.751 61.111 0.00 0.00 44.31 4.04
329 340 2.216750 AATGCGAGTGTGGCCAATGC 62.217 55.000 7.24 8.07 0.00 3.56
330 341 1.064505 CTAATGCGAGTGTGGCCAATG 59.935 52.381 7.24 0.00 0.00 2.82
331 342 1.382522 CTAATGCGAGTGTGGCCAAT 58.617 50.000 7.24 0.00 0.00 3.16
332 343 0.676466 CCTAATGCGAGTGTGGCCAA 60.676 55.000 7.24 0.00 0.00 4.52
333 344 1.078497 CCTAATGCGAGTGTGGCCA 60.078 57.895 0.00 0.00 0.00 5.36
334 345 1.819632 CCCTAATGCGAGTGTGGCC 60.820 63.158 0.00 0.00 0.00 5.36
335 346 1.819632 CCCCTAATGCGAGTGTGGC 60.820 63.158 0.00 0.00 0.00 5.01
336 347 0.744414 CACCCCTAATGCGAGTGTGG 60.744 60.000 0.00 0.00 0.00 4.17
337 348 0.744414 CCACCCCTAATGCGAGTGTG 60.744 60.000 0.00 0.00 0.00 3.82
338 349 1.198759 ACCACCCCTAATGCGAGTGT 61.199 55.000 0.00 0.00 0.00 3.55
339 350 0.462047 GACCACCCCTAATGCGAGTG 60.462 60.000 0.00 0.00 0.00 3.51
340 351 1.623542 GGACCACCCCTAATGCGAGT 61.624 60.000 0.00 0.00 0.00 4.18
341 352 1.146263 GGACCACCCCTAATGCGAG 59.854 63.158 0.00 0.00 0.00 5.03
342 353 1.613928 TGGACCACCCCTAATGCGA 60.614 57.895 0.00 0.00 34.81 5.10
343 354 1.153168 CTGGACCACCCCTAATGCG 60.153 63.158 0.00 0.00 34.81 4.73
344 355 1.209621 TACTGGACCACCCCTAATGC 58.790 55.000 0.00 0.00 34.81 3.56
345 356 3.265995 ACTTTACTGGACCACCCCTAATG 59.734 47.826 0.00 0.00 34.81 1.90
346 357 3.265995 CACTTTACTGGACCACCCCTAAT 59.734 47.826 0.00 0.00 34.81 1.73
347 358 2.640826 CACTTTACTGGACCACCCCTAA 59.359 50.000 0.00 0.00 34.81 2.69
348 359 2.262637 CACTTTACTGGACCACCCCTA 58.737 52.381 0.00 0.00 34.81 3.53
349 360 1.064825 CACTTTACTGGACCACCCCT 58.935 55.000 0.00 0.00 34.81 4.79
350 361 0.037734 CCACTTTACTGGACCACCCC 59.962 60.000 0.00 0.00 32.30 4.95
351 362 0.769247 ACCACTTTACTGGACCACCC 59.231 55.000 0.00 0.00 35.04 4.61
352 363 2.651382 AACCACTTTACTGGACCACC 57.349 50.000 0.00 0.00 35.04 4.61
353 364 3.067601 CCAAAACCACTTTACTGGACCAC 59.932 47.826 0.00 0.00 35.04 4.16
354 365 3.053544 TCCAAAACCACTTTACTGGACCA 60.054 43.478 0.00 0.00 35.04 4.02
355 366 3.558033 TCCAAAACCACTTTACTGGACC 58.442 45.455 0.00 0.00 35.04 4.46
356 367 5.451381 CCTTTCCAAAACCACTTTACTGGAC 60.451 44.000 0.00 0.00 31.78 4.02
357 368 4.647399 CCTTTCCAAAACCACTTTACTGGA 59.353 41.667 0.00 0.00 35.04 3.86
358 369 4.404394 ACCTTTCCAAAACCACTTTACTGG 59.596 41.667 0.00 0.00 37.33 4.00
359 370 5.592104 ACCTTTCCAAAACCACTTTACTG 57.408 39.130 0.00 0.00 0.00 2.74
360 371 6.614694 AAACCTTTCCAAAACCACTTTACT 57.385 33.333 0.00 0.00 0.00 2.24
361 372 6.651643 ACAAAACCTTTCCAAAACCACTTTAC 59.348 34.615 0.00 0.00 0.00 2.01
362 373 6.770542 ACAAAACCTTTCCAAAACCACTTTA 58.229 32.000 0.00 0.00 0.00 1.85
363 374 5.626142 ACAAAACCTTTCCAAAACCACTTT 58.374 33.333 0.00 0.00 0.00 2.66
364 375 5.235850 ACAAAACCTTTCCAAAACCACTT 57.764 34.783 0.00 0.00 0.00 3.16
365 376 4.901197 ACAAAACCTTTCCAAAACCACT 57.099 36.364 0.00 0.00 0.00 4.00
366 377 5.968254 TCTACAAAACCTTTCCAAAACCAC 58.032 37.500 0.00 0.00 0.00 4.16
367 378 5.717654 ACTCTACAAAACCTTTCCAAAACCA 59.282 36.000 0.00 0.00 0.00 3.67
368 379 6.040247 CACTCTACAAAACCTTTCCAAAACC 58.960 40.000 0.00 0.00 0.00 3.27
369 380 6.040247 CCACTCTACAAAACCTTTCCAAAAC 58.960 40.000 0.00 0.00 0.00 2.43
370 381 5.717654 ACCACTCTACAAAACCTTTCCAAAA 59.282 36.000 0.00 0.00 0.00 2.44
371 382 5.265989 ACCACTCTACAAAACCTTTCCAAA 58.734 37.500 0.00 0.00 0.00 3.28
372 383 4.862371 ACCACTCTACAAAACCTTTCCAA 58.138 39.130 0.00 0.00 0.00 3.53
373 384 4.513406 ACCACTCTACAAAACCTTTCCA 57.487 40.909 0.00 0.00 0.00 3.53
374 385 5.847111 AAACCACTCTACAAAACCTTTCC 57.153 39.130 0.00 0.00 0.00 3.13
375 386 8.217131 TCTAAAACCACTCTACAAAACCTTTC 57.783 34.615 0.00 0.00 0.00 2.62
376 387 8.464404 GTTCTAAAACCACTCTACAAAACCTTT 58.536 33.333 0.00 0.00 0.00 3.11
377 388 7.993101 GTTCTAAAACCACTCTACAAAACCTT 58.007 34.615 0.00 0.00 0.00 3.50
378 389 7.563888 GTTCTAAAACCACTCTACAAAACCT 57.436 36.000 0.00 0.00 0.00 3.50
393 404 0.794473 CGCACGGGAGGTTCTAAAAC 59.206 55.000 0.00 0.00 34.46 2.43
394 405 0.393820 ACGCACGGGAGGTTCTAAAA 59.606 50.000 0.00 0.00 0.00 1.52
395 406 0.393820 AACGCACGGGAGGTTCTAAA 59.606 50.000 0.00 0.00 0.00 1.85
396 407 0.393820 AAACGCACGGGAGGTTCTAA 59.606 50.000 0.00 0.00 0.00 2.10
397 408 0.393820 AAAACGCACGGGAGGTTCTA 59.606 50.000 0.00 0.00 0.00 2.10
398 409 0.464916 AAAAACGCACGGGAGGTTCT 60.465 50.000 0.00 0.00 0.00 3.01
399 410 2.027325 AAAAACGCACGGGAGGTTC 58.973 52.632 0.00 0.00 0.00 3.62
400 411 4.246053 AAAAACGCACGGGAGGTT 57.754 50.000 0.00 0.00 0.00 3.50
485 496 9.829507 ATGACATGTATTTGGACAAAAGAAAAA 57.170 25.926 0.00 0.00 33.56 1.94
486 497 9.474920 GATGACATGTATTTGGACAAAAGAAAA 57.525 29.630 0.00 0.00 33.56 2.29
487 498 8.637099 TGATGACATGTATTTGGACAAAAGAAA 58.363 29.630 0.00 0.00 33.56 2.52
488 499 8.175925 TGATGACATGTATTTGGACAAAAGAA 57.824 30.769 0.00 0.00 33.56 2.52
489 500 7.757941 TGATGACATGTATTTGGACAAAAGA 57.242 32.000 0.00 0.00 33.56 2.52
490 501 8.991243 AATGATGACATGTATTTGGACAAAAG 57.009 30.769 0.00 0.00 36.79 2.27
491 502 9.775854 AAAATGATGACATGTATTTGGACAAAA 57.224 25.926 0.00 0.00 36.79 2.44
492 503 9.205719 CAAAATGATGACATGTATTTGGACAAA 57.794 29.630 0.00 0.00 36.79 2.83
493 504 8.583296 TCAAAATGATGACATGTATTTGGACAA 58.417 29.630 0.00 0.00 34.85 3.18
494 505 8.120140 TCAAAATGATGACATGTATTTGGACA 57.880 30.769 0.00 0.00 34.85 4.02
495 506 8.984891 TTCAAAATGATGACATGTATTTGGAC 57.015 30.769 7.96 0.00 34.85 4.02
522 533 8.427012 CGTGTATACAAACAACGTATAACTTGT 58.573 33.333 7.25 0.00 34.46 3.16
523 534 8.427012 ACGTGTATACAAACAACGTATAACTTG 58.573 33.333 14.58 0.00 36.26 3.16
524 535 8.427012 CACGTGTATACAAACAACGTATAACTT 58.573 33.333 15.44 0.00 36.26 2.66
525 536 7.807433 TCACGTGTATACAAACAACGTATAACT 59.193 33.333 16.51 0.00 36.26 2.24
526 537 7.937704 TCACGTGTATACAAACAACGTATAAC 58.062 34.615 16.51 0.00 36.26 1.89
527 538 8.512800 TTCACGTGTATACAAACAACGTATAA 57.487 30.769 16.51 11.25 36.26 0.98
528 539 8.423973 GTTTCACGTGTATACAAACAACGTATA 58.576 33.333 16.51 6.98 36.26 1.47
529 540 7.042858 TGTTTCACGTGTATACAAACAACGTAT 60.043 33.333 22.67 0.00 36.26 3.06
530 541 6.254373 TGTTTCACGTGTATACAAACAACGTA 59.746 34.615 22.67 6.42 36.26 3.57
531 542 5.063186 TGTTTCACGTGTATACAAACAACGT 59.937 36.000 22.67 13.11 37.49 3.99
532 543 5.491092 TGTTTCACGTGTATACAAACAACG 58.509 37.500 22.67 12.57 34.76 4.10
533 544 7.901874 AATGTTTCACGTGTATACAAACAAC 57.098 32.000 26.30 12.87 39.66 3.32
534 545 8.912787 AAAATGTTTCACGTGTATACAAACAA 57.087 26.923 26.30 15.44 39.66 2.83
535 546 8.912787 AAAAATGTTTCACGTGTATACAAACA 57.087 26.923 25.34 25.34 40.31 2.83
583 594 9.295825 TGTTGGAAGAAGTATCAAACATGTATT 57.704 29.630 0.00 0.00 0.00 1.89
584 595 8.730680 GTGTTGGAAGAAGTATCAAACATGTAT 58.269 33.333 0.00 0.00 0.00 2.29
585 596 7.717436 TGTGTTGGAAGAAGTATCAAACATGTA 59.283 33.333 0.00 0.00 0.00 2.29
586 597 6.545666 TGTGTTGGAAGAAGTATCAAACATGT 59.454 34.615 0.00 0.00 0.00 3.21
587 598 6.969366 TGTGTTGGAAGAAGTATCAAACATG 58.031 36.000 0.29 0.00 0.00 3.21
588 599 7.765695 ATGTGTTGGAAGAAGTATCAAACAT 57.234 32.000 0.29 0.00 0.00 2.71
589 600 7.936847 AGTATGTGTTGGAAGAAGTATCAAACA 59.063 33.333 0.00 0.00 0.00 2.83
590 601 8.324163 AGTATGTGTTGGAAGAAGTATCAAAC 57.676 34.615 0.00 0.00 0.00 2.93
592 603 9.653287 CTTAGTATGTGTTGGAAGAAGTATCAA 57.347 33.333 0.00 0.00 0.00 2.57
593 604 7.764443 GCTTAGTATGTGTTGGAAGAAGTATCA 59.236 37.037 0.00 0.00 0.00 2.15
594 605 7.764443 TGCTTAGTATGTGTTGGAAGAAGTATC 59.236 37.037 0.00 0.00 0.00 2.24
595 606 7.620880 TGCTTAGTATGTGTTGGAAGAAGTAT 58.379 34.615 0.00 0.00 0.00 2.12
596 607 6.999950 TGCTTAGTATGTGTTGGAAGAAGTA 58.000 36.000 0.00 0.00 0.00 2.24
597 608 5.865085 TGCTTAGTATGTGTTGGAAGAAGT 58.135 37.500 0.00 0.00 0.00 3.01
598 609 6.801539 TTGCTTAGTATGTGTTGGAAGAAG 57.198 37.500 0.00 0.00 0.00 2.85
599 610 7.759489 AATTGCTTAGTATGTGTTGGAAGAA 57.241 32.000 0.00 0.00 0.00 2.52
600 611 7.446931 TGAAATTGCTTAGTATGTGTTGGAAGA 59.553 33.333 0.00 0.00 0.00 2.87
601 612 7.592938 TGAAATTGCTTAGTATGTGTTGGAAG 58.407 34.615 0.00 0.00 0.00 3.46
602 613 7.517614 TGAAATTGCTTAGTATGTGTTGGAA 57.482 32.000 0.00 0.00 0.00 3.53
603 614 7.517614 TTGAAATTGCTTAGTATGTGTTGGA 57.482 32.000 0.00 0.00 0.00 3.53
604 615 7.651304 TGTTTGAAATTGCTTAGTATGTGTTGG 59.349 33.333 0.00 0.00 0.00 3.77
605 616 8.479280 GTGTTTGAAATTGCTTAGTATGTGTTG 58.521 33.333 0.00 0.00 0.00 3.33
606 617 8.194104 TGTGTTTGAAATTGCTTAGTATGTGTT 58.806 29.630 0.00 0.00 0.00 3.32
607 618 7.647715 GTGTGTTTGAAATTGCTTAGTATGTGT 59.352 33.333 0.00 0.00 0.00 3.72
608 619 7.647318 TGTGTGTTTGAAATTGCTTAGTATGTG 59.353 33.333 0.00 0.00 0.00 3.21
609 620 7.711846 TGTGTGTTTGAAATTGCTTAGTATGT 58.288 30.769 0.00 0.00 0.00 2.29
610 621 8.746922 ATGTGTGTTTGAAATTGCTTAGTATG 57.253 30.769 0.00 0.00 0.00 2.39
611 622 9.410556 GAATGTGTGTTTGAAATTGCTTAGTAT 57.589 29.630 0.00 0.00 0.00 2.12
612 623 8.409371 TGAATGTGTGTTTGAAATTGCTTAGTA 58.591 29.630 0.00 0.00 0.00 1.82
613 624 7.264221 TGAATGTGTGTTTGAAATTGCTTAGT 58.736 30.769 0.00 0.00 0.00 2.24
614 625 7.697352 TGAATGTGTGTTTGAAATTGCTTAG 57.303 32.000 0.00 0.00 0.00 2.18
615 626 8.659925 ATTGAATGTGTGTTTGAAATTGCTTA 57.340 26.923 0.00 0.00 0.00 3.09
616 627 6.981762 TTGAATGTGTGTTTGAAATTGCTT 57.018 29.167 0.00 0.00 0.00 3.91
617 628 7.556733 AATTGAATGTGTGTTTGAAATTGCT 57.443 28.000 0.00 0.00 0.00 3.91
618 629 8.617761 AAAATTGAATGTGTGTTTGAAATTGC 57.382 26.923 0.00 0.00 0.00 3.56
622 633 9.823098 CAAGAAAAATTGAATGTGTGTTTGAAA 57.177 25.926 0.00 0.00 31.55 2.69
623 634 9.212641 TCAAGAAAAATTGAATGTGTGTTTGAA 57.787 25.926 0.00 0.00 36.28 2.69
624 635 8.768957 TCAAGAAAAATTGAATGTGTGTTTGA 57.231 26.923 0.00 0.00 36.28 2.69
636 647 9.658799 TGTTTGTTATGGTTCAAGAAAAATTGA 57.341 25.926 0.00 0.00 37.41 2.57
640 651 9.883142 AGAATGTTTGTTATGGTTCAAGAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
641 652 9.883142 AAGAATGTTTGTTATGGTTCAAGAAAA 57.117 25.926 0.00 0.00 0.00 2.29
642 653 9.883142 AAAGAATGTTTGTTATGGTTCAAGAAA 57.117 25.926 0.00 0.00 0.00 2.52
643 654 9.883142 AAAAGAATGTTTGTTATGGTTCAAGAA 57.117 25.926 0.00 0.00 0.00 2.52
644 655 9.528018 GAAAAGAATGTTTGTTATGGTTCAAGA 57.472 29.630 0.00 0.00 0.00 3.02
645 656 9.311916 TGAAAAGAATGTTTGTTATGGTTCAAG 57.688 29.630 0.00 0.00 0.00 3.02
646 657 9.092876 GTGAAAAGAATGTTTGTTATGGTTCAA 57.907 29.630 0.00 0.00 0.00 2.69
647 658 8.253810 TGTGAAAAGAATGTTTGTTATGGTTCA 58.746 29.630 0.00 0.00 0.00 3.18
648 659 8.641499 TGTGAAAAGAATGTTTGTTATGGTTC 57.359 30.769 0.00 0.00 0.00 3.62
649 660 9.612066 ATTGTGAAAAGAATGTTTGTTATGGTT 57.388 25.926 0.00 0.00 0.00 3.67
650 661 9.612066 AATTGTGAAAAGAATGTTTGTTATGGT 57.388 25.926 0.00 0.00 0.00 3.55
683 694 9.947433 TCATTTCAAAAATATGCTCCTGAAATT 57.053 25.926 5.36 0.00 39.99 1.82
684 695 9.595823 CTCATTTCAAAAATATGCTCCTGAAAT 57.404 29.630 0.00 0.00 41.69 2.17
685 696 8.587608 ACTCATTTCAAAAATATGCTCCTGAAA 58.412 29.630 0.00 0.00 37.24 2.69
686 697 8.030692 CACTCATTTCAAAAATATGCTCCTGAA 58.969 33.333 0.00 0.00 0.00 3.02
687 698 7.394077 TCACTCATTTCAAAAATATGCTCCTGA 59.606 33.333 0.00 0.00 0.00 3.86
688 699 7.541162 TCACTCATTTCAAAAATATGCTCCTG 58.459 34.615 0.00 0.00 0.00 3.86
689 700 7.707624 TCACTCATTTCAAAAATATGCTCCT 57.292 32.000 0.00 0.00 0.00 3.69
690 701 7.814107 TGTTCACTCATTTCAAAAATATGCTCC 59.186 33.333 0.00 0.00 0.00 4.70
691 702 8.746922 TGTTCACTCATTTCAAAAATATGCTC 57.253 30.769 0.00 0.00 0.00 4.26
692 703 9.715121 AATGTTCACTCATTTCAAAAATATGCT 57.285 25.926 0.00 0.00 34.86 3.79
697 708 9.393512 TGGAAAATGTTCACTCATTTCAAAAAT 57.606 25.926 0.00 0.00 44.10 1.82
698 709 8.783833 TGGAAAATGTTCACTCATTTCAAAAA 57.216 26.923 0.00 0.00 44.10 1.94
699 710 8.783833 TTGGAAAATGTTCACTCATTTCAAAA 57.216 26.923 0.00 0.00 44.10 2.44
700 711 8.783833 TTTGGAAAATGTTCACTCATTTCAAA 57.216 26.923 0.00 11.36 44.10 2.69
701 712 8.828644 CATTTGGAAAATGTTCACTCATTTCAA 58.171 29.630 0.00 4.46 44.10 2.69
702 713 7.986320 ACATTTGGAAAATGTTCACTCATTTCA 59.014 29.630 11.58 0.00 44.10 2.69
703 714 8.277713 CACATTTGGAAAATGTTCACTCATTTC 58.722 33.333 14.11 0.00 44.10 2.17
704 715 7.986320 TCACATTTGGAAAATGTTCACTCATTT 59.014 29.630 14.11 0.00 45.94 2.32
705 716 7.499292 TCACATTTGGAAAATGTTCACTCATT 58.501 30.769 14.11 0.00 38.69 2.57
706 717 7.053316 TCACATTTGGAAAATGTTCACTCAT 57.947 32.000 14.11 0.00 38.69 2.90
707 718 6.462552 TCACATTTGGAAAATGTTCACTCA 57.537 33.333 14.11 0.00 38.69 3.41
708 719 7.115378 GTCATCACATTTGGAAAATGTTCACTC 59.885 37.037 14.11 4.36 38.69 3.51
709 720 6.925165 GTCATCACATTTGGAAAATGTTCACT 59.075 34.615 14.11 0.00 38.69 3.41
710 721 6.700960 TGTCATCACATTTGGAAAATGTTCAC 59.299 34.615 14.11 9.58 38.69 3.18
711 722 6.814043 TGTCATCACATTTGGAAAATGTTCA 58.186 32.000 14.11 6.26 38.69 3.18
712 723 7.712264 TTGTCATCACATTTGGAAAATGTTC 57.288 32.000 14.11 0.00 38.69 3.18
713 724 8.503458 TTTTGTCATCACATTTGGAAAATGTT 57.497 26.923 14.11 0.94 38.69 2.71
714 725 8.397148 GTTTTTGTCATCACATTTGGAAAATGT 58.603 29.630 11.58 11.58 41.18 2.71
715 726 8.614346 AGTTTTTGTCATCACATTTGGAAAATG 58.386 29.630 10.41 10.41 30.55 2.32
716 727 8.735692 AGTTTTTGTCATCACATTTGGAAAAT 57.264 26.923 0.00 0.00 30.55 1.82
717 728 8.558973 AAGTTTTTGTCATCACATTTGGAAAA 57.441 26.923 0.00 0.00 30.55 2.29
718 729 9.829507 ATAAGTTTTTGTCATCACATTTGGAAA 57.170 25.926 0.00 0.00 30.55 3.13
719 730 9.258826 CATAAGTTTTTGTCATCACATTTGGAA 57.741 29.630 0.00 0.00 30.55 3.53
720 731 8.637099 TCATAAGTTTTTGTCATCACATTTGGA 58.363 29.630 0.00 0.00 30.55 3.53
721 732 8.815141 TCATAAGTTTTTGTCATCACATTTGG 57.185 30.769 0.00 0.00 30.55 3.28
752 763 9.829507 TGACATATTGAAAGGAAAATGTTTTGT 57.170 25.926 0.00 0.00 0.00 2.83
784 795 8.788806 CCGAACATGGCCTTATTATAAAATGTA 58.211 33.333 3.32 0.00 0.00 2.29
785 796 7.255801 CCCGAACATGGCCTTATTATAAAATGT 60.256 37.037 3.32 0.00 0.00 2.71
786 797 7.040062 TCCCGAACATGGCCTTATTATAAAATG 60.040 37.037 3.32 0.00 0.00 2.32
787 798 7.007723 TCCCGAACATGGCCTTATTATAAAAT 58.992 34.615 3.32 0.00 0.00 1.82
788 799 6.263617 GTCCCGAACATGGCCTTATTATAAAA 59.736 38.462 3.32 0.00 0.00 1.52
789 800 5.766174 GTCCCGAACATGGCCTTATTATAAA 59.234 40.000 3.32 0.00 0.00 1.40
790 801 5.310451 GTCCCGAACATGGCCTTATTATAA 58.690 41.667 3.32 0.00 0.00 0.98
791 802 4.561938 CGTCCCGAACATGGCCTTATTATA 60.562 45.833 3.32 0.00 0.00 0.98
792 803 3.751518 GTCCCGAACATGGCCTTATTAT 58.248 45.455 3.32 0.00 0.00 1.28
793 804 2.484065 CGTCCCGAACATGGCCTTATTA 60.484 50.000 3.32 0.00 0.00 0.98
794 805 1.745827 CGTCCCGAACATGGCCTTATT 60.746 52.381 3.32 0.00 0.00 1.40
795 806 0.179056 CGTCCCGAACATGGCCTTAT 60.179 55.000 3.32 0.00 0.00 1.73
874 887 2.846193 CTCTTTCCTTTGTCCCGAACA 58.154 47.619 0.00 0.00 35.59 3.18
1193 1234 3.239449 GACTTCCCCCAAATTTCTGGTT 58.761 45.455 0.00 0.00 34.33 3.67
1522 1752 6.780457 AAATCAGAAAATGGATACCCTGTG 57.220 37.500 0.00 0.00 0.00 3.66
1714 2082 5.680619 TGTGGTATTGAAGGCAGGTAATAG 58.319 41.667 0.00 0.00 0.00 1.73
2131 2545 0.394899 GCCTCTAGTGCAGCCCAAAT 60.395 55.000 0.00 0.00 0.00 2.32
2515 2991 9.722056 CTGAATGTATTATTGCTAGAAAACCAC 57.278 33.333 0.00 0.00 0.00 4.16
2560 3036 6.966534 AATGTCAAGTCATTTCCTTGAGTT 57.033 33.333 3.25 0.45 46.51 3.01
2631 3107 4.778534 ATTTCATGCAAAGTCTGTCCAG 57.221 40.909 0.00 0.00 0.00 3.86
3324 3809 5.717078 TGGTTGTACTGTACTCCACTTAG 57.283 43.478 21.80 0.00 32.08 2.18
3554 4067 4.776435 TGGAGATATGACATTGCCTGAA 57.224 40.909 0.00 0.00 0.00 3.02
3658 4171 6.824958 AAGCAAGGTATCCCATACTAAAGA 57.175 37.500 0.00 0.00 36.04 2.52
3871 4384 4.843728 AGAACATGGATTCAATGTACCGT 58.156 39.130 7.11 0.00 0.00 4.83
3974 4487 4.689812 TCACAAAATGTAATGGTTGCATGC 59.310 37.500 11.82 11.82 36.09 4.06
4068 4581 4.878397 GCAGAACTGTATTGGAGCTATTGT 59.122 41.667 3.77 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.