Multiple sequence alignment - TraesCS3A01G516300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G516300 chr3A 100.000 2717 0 0 1 2717 733963319 733966035 0.000000e+00 5018.0
1 TraesCS3A01G516300 chr3A 94.004 567 23 8 1 566 733929715 733930271 0.000000e+00 848.0
2 TraesCS3A01G516300 chr3D 91.873 1292 52 27 786 2049 604303004 604304270 0.000000e+00 1755.0
3 TraesCS3A01G516300 chr3D 85.281 231 30 2 2068 2295 604304353 604304582 4.520000e-58 235.0
4 TraesCS3A01G516300 chr3D 82.031 256 33 9 2042 2295 394066686 394066442 3.550000e-49 206.0
5 TraesCS3A01G516300 chr3D 92.800 125 9 0 604 728 604302293 604302417 5.980000e-42 182.0
6 TraesCS3A01G516300 chr3D 85.333 150 20 2 2568 2716 604304579 604304727 1.300000e-33 154.0
7 TraesCS3A01G516300 chr3D 96.296 54 2 0 567 620 604302219 604302272 3.730000e-14 89.8
8 TraesCS3A01G516300 chrUn 87.835 1307 81 34 786 2049 42211860 42210589 0.000000e+00 1461.0
9 TraesCS3A01G516300 chr4A 94.533 567 24 5 1 566 581323940 581323380 0.000000e+00 869.0
10 TraesCS3A01G516300 chr4A 93.368 573 29 7 3 567 581318353 581317782 0.000000e+00 839.0
11 TraesCS3A01G516300 chr4A 92.807 570 35 5 1 566 513362334 513362901 0.000000e+00 821.0
12 TraesCS3A01G516300 chr4A 92.807 570 32 6 1 566 4491408 4491972 0.000000e+00 817.0
13 TraesCS3A01G516300 chr4A 96.364 275 10 0 2294 2568 541775913 541775639 1.150000e-123 453.0
14 TraesCS3A01G516300 chr4A 82.512 406 39 12 1757 2152 201600472 201600855 7.250000e-86 327.0
15 TraesCS3A01G516300 chr4A 86.364 88 9 2 1340 1427 743713035 743712951 2.880000e-15 93.5
16 TraesCS3A01G516300 chr5A 93.007 572 32 5 1 566 54472355 54471786 0.000000e+00 828.0
17 TraesCS3A01G516300 chr5A 92.721 577 29 11 1 566 42665623 42666197 0.000000e+00 821.0
18 TraesCS3A01G516300 chr5A 92.794 569 34 5 1 566 374637000 374636436 0.000000e+00 817.0
19 TraesCS3A01G516300 chr6A 92.769 567 33 5 1 566 181431700 181432259 0.000000e+00 813.0
20 TraesCS3A01G516300 chr3B 97.091 275 8 0 2294 2568 811980636 811980362 5.300000e-127 464.0
21 TraesCS3A01G516300 chr3B 96.727 275 9 0 2294 2568 811899127 811898853 2.470000e-125 459.0
22 TraesCS3A01G516300 chr2D 96.715 274 9 0 2295 2568 429430536 429430809 8.870000e-125 457.0
23 TraesCS3A01G516300 chr7A 95.760 283 10 2 2294 2576 383183722 383184002 3.190000e-124 455.0
24 TraesCS3A01G516300 chr7A 96.364 275 10 0 2294 2568 22164419 22164693 1.150000e-123 453.0
25 TraesCS3A01G516300 chr7A 95.699 279 12 0 2290 2568 463647258 463647536 1.480000e-122 449.0
26 TraesCS3A01G516300 chr6D 96.057 279 11 0 2294 2572 448351519 448351797 3.190000e-124 455.0
27 TraesCS3A01G516300 chr1D 96.071 280 10 1 2290 2568 12328198 12327919 3.190000e-124 455.0
28 TraesCS3A01G516300 chr1D 85.227 88 10 2 1340 1427 408519124 408519208 1.340000e-13 87.9
29 TraesCS3A01G516300 chr2B 83.708 178 17 8 2121 2295 247941518 247941350 1.010000e-34 158.0
30 TraesCS3A01G516300 chr1A 92.857 84 5 1 567 649 473970840 473970757 1.320000e-23 121.0
31 TraesCS3A01G516300 chr1A 85.227 88 10 2 1340 1427 564330049 564329965 1.340000e-13 87.9
32 TraesCS3A01G516300 chr5B 89.610 77 5 2 1350 1426 693923670 693923597 8.010000e-16 95.3
33 TraesCS3A01G516300 chr4D 85.227 88 10 2 1340 1427 486439075 486438991 1.340000e-13 87.9
34 TraesCS3A01G516300 chr4B 85.227 88 10 2 1340 1427 370708797 370708713 1.340000e-13 87.9
35 TraesCS3A01G516300 chr4B 85.227 88 10 2 1340 1427 580963744 580963828 1.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G516300 chr3A 733963319 733966035 2716 False 5018.00 5018 100.0000 1 2717 1 chr3A.!!$F2 2716
1 TraesCS3A01G516300 chr3A 733929715 733930271 556 False 848.00 848 94.0040 1 566 1 chr3A.!!$F1 565
2 TraesCS3A01G516300 chr3D 604302219 604304727 2508 False 483.16 1755 90.3166 567 2716 5 chr3D.!!$F1 2149
3 TraesCS3A01G516300 chrUn 42210589 42211860 1271 True 1461.00 1461 87.8350 786 2049 1 chrUn.!!$R1 1263
4 TraesCS3A01G516300 chr4A 581323380 581323940 560 True 869.00 869 94.5330 1 566 1 chr4A.!!$R3 565
5 TraesCS3A01G516300 chr4A 581317782 581318353 571 True 839.00 839 93.3680 3 567 1 chr4A.!!$R2 564
6 TraesCS3A01G516300 chr4A 513362334 513362901 567 False 821.00 821 92.8070 1 566 1 chr4A.!!$F3 565
7 TraesCS3A01G516300 chr4A 4491408 4491972 564 False 817.00 817 92.8070 1 566 1 chr4A.!!$F1 565
8 TraesCS3A01G516300 chr5A 54471786 54472355 569 True 828.00 828 93.0070 1 566 1 chr5A.!!$R1 565
9 TraesCS3A01G516300 chr5A 42665623 42666197 574 False 821.00 821 92.7210 1 566 1 chr5A.!!$F1 565
10 TraesCS3A01G516300 chr5A 374636436 374637000 564 True 817.00 817 92.7940 1 566 1 chr5A.!!$R2 565
11 TraesCS3A01G516300 chr6A 181431700 181432259 559 False 813.00 813 92.7690 1 566 1 chr6A.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 810 0.107643 TTTGGGACATGTGTGAGCGA 59.892 50.0 1.15 0.0 39.3 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2565 3296 0.036732 AAGGCAAATGGTCGCTCAGA 59.963 50.0 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.630878 GGGGATCTTCTGGTGTGTCTT 59.369 52.381 0.00 0.00 0.00 3.01
85 86 3.648067 TCTTCTGGTGTGTCTTTCTGGAT 59.352 43.478 0.00 0.00 0.00 3.41
232 234 4.989168 GTCCACTACAGAAGACGTTTCAAT 59.011 41.667 11.33 3.79 0.00 2.57
267 269 1.429021 GTATACCCGTCGTGCGTGA 59.571 57.895 0.00 0.00 39.32 4.35
288 290 7.517734 GCGTGACAAAAATTTAGATATCGGCTA 60.518 37.037 0.00 0.00 0.00 3.93
515 543 6.841781 AAGTGGGCCTCTAGGATTTATTAA 57.158 37.500 8.81 0.00 37.39 1.40
544 572 6.013554 TCTAAAATAGTTATTGGGCTGCCT 57.986 37.500 19.68 0.70 0.00 4.75
581 609 2.630872 CACAACGTGCGTGCATGA 59.369 55.556 20.13 0.00 36.80 3.07
591 619 1.264020 TGCGTGCATGAAGTTTCAGTC 59.736 47.619 10.93 0.00 41.08 3.51
671 736 7.770201 CATGTGTCCATGTAATATTTCCAACA 58.230 34.615 0.00 0.00 42.92 3.33
689 754 4.218417 CCAACACATTTCTGTTCCCTAAGG 59.782 45.833 0.00 0.00 31.73 2.69
690 755 4.724279 ACACATTTCTGTTCCCTAAGGT 57.276 40.909 0.00 0.00 31.62 3.50
693 758 6.002082 ACACATTTCTGTTCCCTAAGGTTAC 58.998 40.000 0.00 0.00 31.62 2.50
703 768 2.611224 CCCTAAGGTTACGAAACACGCT 60.611 50.000 0.00 0.00 46.94 5.07
732 797 3.084536 TGCACTGCATAGATTTTGGGA 57.915 42.857 0.00 0.00 31.71 4.37
733 798 2.754552 TGCACTGCATAGATTTTGGGAC 59.245 45.455 0.00 0.00 31.71 4.46
734 799 2.754552 GCACTGCATAGATTTTGGGACA 59.245 45.455 0.00 0.00 0.00 4.02
735 800 3.382546 GCACTGCATAGATTTTGGGACAT 59.617 43.478 0.00 0.00 39.30 3.06
736 801 4.735578 GCACTGCATAGATTTTGGGACATG 60.736 45.833 0.00 0.00 39.30 3.21
738 803 4.400251 ACTGCATAGATTTTGGGACATGTG 59.600 41.667 1.15 0.00 39.30 3.21
740 805 4.158209 TGCATAGATTTTGGGACATGTGTG 59.842 41.667 1.15 0.00 39.30 3.82
741 806 4.398988 GCATAGATTTTGGGACATGTGTGA 59.601 41.667 1.15 0.00 39.30 3.58
742 807 5.449588 GCATAGATTTTGGGACATGTGTGAG 60.450 44.000 1.15 0.00 39.30 3.51
743 808 2.821969 AGATTTTGGGACATGTGTGAGC 59.178 45.455 1.15 0.00 39.30 4.26
744 809 0.950836 TTTTGGGACATGTGTGAGCG 59.049 50.000 1.15 0.00 39.30 5.03
745 810 0.107643 TTTGGGACATGTGTGAGCGA 59.892 50.000 1.15 0.00 39.30 4.93
748 813 0.517316 GGGACATGTGTGAGCGAAAC 59.483 55.000 1.15 0.00 0.00 2.78
750 815 1.601903 GGACATGTGTGAGCGAAACAA 59.398 47.619 1.15 0.00 0.00 2.83
752 817 2.287915 GACATGTGTGAGCGAAACAAGT 59.712 45.455 1.15 0.00 0.00 3.16
753 818 3.462982 ACATGTGTGAGCGAAACAAGTA 58.537 40.909 0.00 0.00 0.00 2.24
754 819 3.874543 ACATGTGTGAGCGAAACAAGTAA 59.125 39.130 0.00 0.00 0.00 2.24
755 820 4.024893 ACATGTGTGAGCGAAACAAGTAAG 60.025 41.667 0.00 0.00 0.00 2.34
756 821 3.787785 TGTGTGAGCGAAACAAGTAAGA 58.212 40.909 0.00 0.00 0.00 2.10
757 822 3.554324 TGTGTGAGCGAAACAAGTAAGAC 59.446 43.478 0.00 0.00 0.00 3.01
758 823 3.554324 GTGTGAGCGAAACAAGTAAGACA 59.446 43.478 0.00 0.00 0.00 3.41
759 824 3.802139 TGTGAGCGAAACAAGTAAGACAG 59.198 43.478 0.00 0.00 0.00 3.51
760 825 4.049186 GTGAGCGAAACAAGTAAGACAGA 58.951 43.478 0.00 0.00 0.00 3.41
761 826 4.149046 GTGAGCGAAACAAGTAAGACAGAG 59.851 45.833 0.00 0.00 0.00 3.35
762 827 4.202121 TGAGCGAAACAAGTAAGACAGAGT 60.202 41.667 0.00 0.00 0.00 3.24
763 828 4.299978 AGCGAAACAAGTAAGACAGAGTC 58.700 43.478 0.00 0.00 0.00 3.36
764 829 4.049186 GCGAAACAAGTAAGACAGAGTCA 58.951 43.478 0.00 0.00 34.60 3.41
765 830 4.686554 GCGAAACAAGTAAGACAGAGTCAT 59.313 41.667 0.00 0.00 34.60 3.06
766 831 5.177696 GCGAAACAAGTAAGACAGAGTCATT 59.822 40.000 0.00 0.00 34.60 2.57
767 832 6.365247 GCGAAACAAGTAAGACAGAGTCATTA 59.635 38.462 0.00 0.00 34.60 1.90
768 833 7.095774 GCGAAACAAGTAAGACAGAGTCATTAA 60.096 37.037 0.00 0.00 34.60 1.40
796 1390 3.349022 CATTTTCCTTACACCGCCCTTA 58.651 45.455 0.00 0.00 0.00 2.69
809 1403 1.571773 GCCCTTAGACCACACCCCAT 61.572 60.000 0.00 0.00 0.00 4.00
843 1442 2.040544 GCGATCCCCACACACTTGG 61.041 63.158 0.00 0.00 36.26 3.61
888 1500 0.741915 CTCTCCTCTCGCCTTGTACC 59.258 60.000 0.00 0.00 0.00 3.34
895 1507 0.179161 CTCGCCTTGTACCAGTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
896 1508 0.892358 TCGCCTTGTACCAGTCTCGT 60.892 55.000 0.00 0.00 0.00 4.18
897 1509 0.456312 CGCCTTGTACCAGTCTCGTC 60.456 60.000 0.00 0.00 0.00 4.20
898 1510 0.889306 GCCTTGTACCAGTCTCGTCT 59.111 55.000 0.00 0.00 0.00 4.18
899 1511 1.135344 GCCTTGTACCAGTCTCGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
962 1579 1.705186 CCCCAAAGTCTCCTCCTTTCA 59.295 52.381 0.00 0.00 29.89 2.69
963 1580 2.310052 CCCCAAAGTCTCCTCCTTTCAT 59.690 50.000 0.00 0.00 29.89 2.57
964 1581 3.615155 CCCAAAGTCTCCTCCTTTCATC 58.385 50.000 0.00 0.00 29.89 2.92
965 1582 3.615155 CCAAAGTCTCCTCCTTTCATCC 58.385 50.000 0.00 0.00 29.89 3.51
990 1607 2.518112 TCAGCCAAGCAAACGCCA 60.518 55.556 0.00 0.00 0.00 5.69
994 1611 2.354539 CCAAGCAAACGCCAACCG 60.355 61.111 0.00 0.00 44.21 4.44
1428 2053 3.210528 GCCGAGGACGAGGACGAT 61.211 66.667 0.00 0.00 42.66 3.73
1623 2257 3.118482 AGGATGCTGAAATCACTGACGAT 60.118 43.478 0.00 0.00 0.00 3.73
1625 2259 3.044235 TGCTGAAATCACTGACGATGT 57.956 42.857 0.00 0.00 0.00 3.06
1651 2294 2.915659 AGGACGACGGGTTCTGCA 60.916 61.111 0.00 0.00 31.38 4.41
1765 2423 1.837051 AACAGAGGTCAGCCGTCCA 60.837 57.895 0.00 0.00 40.50 4.02
1787 2445 4.834453 CCTCCGCCTCTGCTGCTG 62.834 72.222 0.00 0.00 34.43 4.41
1836 2497 5.448360 GCATCTGCTCTGTTCCTGTTAATTC 60.448 44.000 0.00 0.00 38.21 2.17
1847 2508 3.517901 TCCTGTTAATTCATCGTGTCCCT 59.482 43.478 0.00 0.00 0.00 4.20
1848 2509 3.623060 CCTGTTAATTCATCGTGTCCCTG 59.377 47.826 0.00 0.00 0.00 4.45
1883 2548 3.366374 GCTCTGTTGCTGTTAATTGGTCC 60.366 47.826 0.00 0.00 0.00 4.46
1958 2623 9.288576 TCATGGATTATCATGACCTGAATTTAC 57.711 33.333 0.00 0.00 45.81 2.01
2020 2685 3.060602 CGTCTTCAGACCCTGTTTCTTC 58.939 50.000 1.25 0.00 41.86 2.87
2023 2688 3.325135 TCTTCAGACCCTGTTTCTTCCTC 59.675 47.826 0.00 0.00 32.61 3.71
2049 2714 6.328410 TCTGATTGACTGAATGGATGGATACT 59.672 38.462 0.00 0.00 37.61 2.12
2050 2715 6.293698 TGATTGACTGAATGGATGGATACTG 58.706 40.000 0.00 0.00 37.61 2.74
2051 2716 4.694760 TGACTGAATGGATGGATACTGG 57.305 45.455 0.00 0.00 37.61 4.00
2061 2746 3.392616 GGATGGATACTGGTGTGGATTCT 59.607 47.826 0.00 0.00 37.61 2.40
2064 2749 3.199946 TGGATACTGGTGTGGATTCTTCC 59.800 47.826 0.00 0.00 39.26 3.46
2065 2750 3.433740 GGATACTGGTGTGGATTCTTCCC 60.434 52.174 0.00 0.00 41.83 3.97
2066 2751 0.698818 ACTGGTGTGGATTCTTCCCC 59.301 55.000 0.00 0.00 41.83 4.81
2074 2803 4.225267 GTGTGGATTCTTCCCCTCTTTCTA 59.775 45.833 0.00 0.00 41.83 2.10
2075 2804 4.849810 TGTGGATTCTTCCCCTCTTTCTAA 59.150 41.667 0.00 0.00 41.83 2.10
2077 2806 6.011628 TGTGGATTCTTCCCCTCTTTCTAAAT 60.012 38.462 0.00 0.00 41.83 1.40
2079 2808 5.300539 GGATTCTTCCCCTCTTTCTAAATGC 59.699 44.000 0.00 0.00 35.84 3.56
2087 2816 4.406943 CCTCTTTCTAAATGCGCACTTTC 58.593 43.478 14.90 0.00 0.00 2.62
2092 2821 7.589395 TCTTTCTAAATGCGCACTTTCAATTA 58.411 30.769 14.90 3.10 0.00 1.40
2101 2830 5.404968 TGCGCACTTTCAATTAATTTCCTTG 59.595 36.000 5.66 0.00 0.00 3.61
2103 2832 6.399986 GCGCACTTTCAATTAATTTCCTTGTC 60.400 38.462 0.30 0.00 0.00 3.18
2104 2833 6.640499 CGCACTTTCAATTAATTTCCTTGTCA 59.360 34.615 0.00 0.00 0.00 3.58
2105 2834 7.148918 CGCACTTTCAATTAATTTCCTTGTCAG 60.149 37.037 0.00 0.00 0.00 3.51
2118 2849 7.642082 TTTCCTTGTCAGTAGAGACTATACC 57.358 40.000 3.62 0.00 39.27 2.73
2152 2883 2.343101 CTGATCGGCTTTCGGTTTGTA 58.657 47.619 0.00 0.00 39.77 2.41
2165 2896 7.574217 GCTTTCGGTTTGTAATGAAATCTGGTA 60.574 37.037 0.00 0.00 30.68 3.25
2182 2913 6.500684 TCTGGTAAATTCAGTTCTTGATGC 57.499 37.500 0.00 0.00 35.27 3.91
2183 2914 6.003326 TCTGGTAAATTCAGTTCTTGATGCA 58.997 36.000 0.00 0.00 35.27 3.96
2186 2917 4.859304 AAATTCAGTTCTTGATGCAGCA 57.141 36.364 0.00 0.00 35.27 4.41
2192 2923 4.038282 TCAGTTCTTGATGCAGCAATGTTT 59.962 37.500 19.07 2.00 0.00 2.83
2194 2925 5.921976 CAGTTCTTGATGCAGCAATGTTTTA 59.078 36.000 19.07 0.00 0.00 1.52
2196 2927 7.117236 CAGTTCTTGATGCAGCAATGTTTTATT 59.883 33.333 19.07 0.00 0.00 1.40
2204 2935 6.689554 TGCAGCAATGTTTTATTGAGAATGA 58.310 32.000 0.00 0.00 0.00 2.57
2206 2937 8.468399 TGCAGCAATGTTTTATTGAGAATGATA 58.532 29.630 0.00 0.00 0.00 2.15
2216 2947 8.454570 TTTATTGAGAATGATAGATGCAAGCA 57.545 30.769 0.00 0.00 0.00 3.91
2217 2948 8.631480 TTATTGAGAATGATAGATGCAAGCAT 57.369 30.769 7.35 7.35 39.69 3.79
2278 3009 9.683069 CTTTATAACAAGAAGCAAATTGTGTCT 57.317 29.630 0.00 0.00 39.50 3.41
2280 3011 4.989279 ACAAGAAGCAAATTGTGTCTGT 57.011 36.364 0.00 0.00 38.19 3.41
2295 3026 7.857734 TTGTGTCTGTAATTTTTCTGTGAGA 57.142 32.000 0.00 0.00 0.00 3.27
2296 3027 7.246674 TGTGTCTGTAATTTTTCTGTGAGAC 57.753 36.000 0.00 0.00 0.00 3.36
2297 3028 7.047891 TGTGTCTGTAATTTTTCTGTGAGACT 58.952 34.615 0.00 0.00 31.76 3.24
2298 3029 8.201464 TGTGTCTGTAATTTTTCTGTGAGACTA 58.799 33.333 0.00 0.00 31.76 2.59
2299 3030 8.704234 GTGTCTGTAATTTTTCTGTGAGACTAG 58.296 37.037 0.00 0.00 31.76 2.57
2300 3031 7.385205 TGTCTGTAATTTTTCTGTGAGACTAGC 59.615 37.037 0.00 0.00 31.76 3.42
2301 3032 6.874134 TCTGTAATTTTTCTGTGAGACTAGCC 59.126 38.462 0.00 0.00 0.00 3.93
2302 3033 6.530120 TGTAATTTTTCTGTGAGACTAGCCA 58.470 36.000 0.00 0.00 0.00 4.75
2303 3034 7.168219 TGTAATTTTTCTGTGAGACTAGCCAT 58.832 34.615 0.00 0.00 0.00 4.40
2304 3035 8.318412 TGTAATTTTTCTGTGAGACTAGCCATA 58.682 33.333 0.00 0.00 0.00 2.74
2305 3036 9.162764 GTAATTTTTCTGTGAGACTAGCCATAA 57.837 33.333 0.00 0.00 0.00 1.90
2306 3037 8.814038 AATTTTTCTGTGAGACTAGCCATAAT 57.186 30.769 0.00 0.00 0.00 1.28
2307 3038 7.615582 TTTTTCTGTGAGACTAGCCATAATG 57.384 36.000 0.00 0.00 0.00 1.90
2308 3039 4.944619 TCTGTGAGACTAGCCATAATGG 57.055 45.455 0.00 0.00 41.55 3.16
2309 3040 3.643320 TCTGTGAGACTAGCCATAATGGG 59.357 47.826 0.00 0.00 38.19 4.00
2310 3041 3.643320 CTGTGAGACTAGCCATAATGGGA 59.357 47.826 0.00 0.00 38.19 4.37
2311 3042 3.643320 TGTGAGACTAGCCATAATGGGAG 59.357 47.826 0.00 0.00 38.19 4.30
2312 3043 3.643792 GTGAGACTAGCCATAATGGGAGT 59.356 47.826 0.00 0.00 38.19 3.85
2313 3044 4.833380 GTGAGACTAGCCATAATGGGAGTA 59.167 45.833 0.00 0.00 38.19 2.59
2314 3045 5.304614 GTGAGACTAGCCATAATGGGAGTAA 59.695 44.000 0.00 0.00 38.19 2.24
2315 3046 5.304614 TGAGACTAGCCATAATGGGAGTAAC 59.695 44.000 0.00 0.00 38.19 2.50
2316 3047 5.468658 AGACTAGCCATAATGGGAGTAACT 58.531 41.667 0.00 0.00 38.19 2.24
2317 3048 5.905913 AGACTAGCCATAATGGGAGTAACTT 59.094 40.000 0.00 0.00 38.19 2.66
2318 3049 7.073854 AGACTAGCCATAATGGGAGTAACTTA 58.926 38.462 0.00 0.00 38.19 2.24
2319 3050 7.567622 AGACTAGCCATAATGGGAGTAACTTAA 59.432 37.037 0.00 0.00 38.19 1.85
2320 3051 7.506971 ACTAGCCATAATGGGAGTAACTTAAC 58.493 38.462 0.00 0.00 38.19 2.01
2321 3052 6.576778 AGCCATAATGGGAGTAACTTAACT 57.423 37.500 0.00 0.00 38.19 2.24
2322 3053 7.685849 AGCCATAATGGGAGTAACTTAACTA 57.314 36.000 0.00 0.00 38.19 2.24
2323 3054 7.736893 AGCCATAATGGGAGTAACTTAACTAG 58.263 38.462 0.00 0.00 38.19 2.57
2324 3055 7.347485 AGCCATAATGGGAGTAACTTAACTAGT 59.653 37.037 0.00 0.00 38.19 2.57
2325 3056 8.645110 GCCATAATGGGAGTAACTTAACTAGTA 58.355 37.037 0.00 0.00 38.19 1.82
2331 3062 8.654485 TGGGAGTAACTTAACTAGTAACATCA 57.346 34.615 0.00 0.00 35.54 3.07
2332 3063 8.526147 TGGGAGTAACTTAACTAGTAACATCAC 58.474 37.037 0.00 0.00 35.54 3.06
2333 3064 8.526147 GGGAGTAACTTAACTAGTAACATCACA 58.474 37.037 0.00 0.00 35.54 3.58
2334 3065 9.351570 GGAGTAACTTAACTAGTAACATCACAC 57.648 37.037 0.00 0.00 35.54 3.82
2335 3066 9.903682 GAGTAACTTAACTAGTAACATCACACA 57.096 33.333 0.00 0.00 35.54 3.72
2340 3071 9.772973 ACTTAACTAGTAACATCACACATTTCA 57.227 29.630 0.00 0.00 34.56 2.69
2345 3076 9.719355 ACTAGTAACATCACACATTTCAATACA 57.281 29.630 0.00 0.00 0.00 2.29
2348 3079 9.283768 AGTAACATCACACATTTCAATACAAGA 57.716 29.630 0.00 0.00 0.00 3.02
2351 3082 8.975410 ACATCACACATTTCAATACAAGATTG 57.025 30.769 0.00 0.00 0.00 2.67
2352 3083 7.543172 ACATCACACATTTCAATACAAGATTGC 59.457 33.333 0.00 0.00 0.00 3.56
2353 3084 7.218228 TCACACATTTCAATACAAGATTGCT 57.782 32.000 0.00 0.00 0.00 3.91
2354 3085 7.660112 TCACACATTTCAATACAAGATTGCTT 58.340 30.769 0.00 0.00 33.74 3.91
2355 3086 8.791675 TCACACATTTCAATACAAGATTGCTTA 58.208 29.630 0.00 0.00 31.81 3.09
2356 3087 9.577110 CACACATTTCAATACAAGATTGCTTAT 57.423 29.630 0.00 0.00 31.81 1.73
2357 3088 9.577110 ACACATTTCAATACAAGATTGCTTATG 57.423 29.630 0.00 0.00 31.81 1.90
2358 3089 9.577110 CACATTTCAATACAAGATTGCTTATGT 57.423 29.630 0.00 0.00 31.81 2.29
2359 3090 9.577110 ACATTTCAATACAAGATTGCTTATGTG 57.423 29.630 0.00 0.00 31.81 3.21
2360 3091 9.027129 CATTTCAATACAAGATTGCTTATGTGG 57.973 33.333 0.00 0.00 31.81 4.17
2361 3092 6.135290 TCAATACAAGATTGCTTATGTGGC 57.865 37.500 0.00 0.00 31.81 5.01
2362 3093 5.651576 TCAATACAAGATTGCTTATGTGGCA 59.348 36.000 0.00 0.00 37.97 4.92
2363 3094 5.762825 ATACAAGATTGCTTATGTGGCAG 57.237 39.130 0.00 0.00 40.90 4.85
2364 3095 2.165030 ACAAGATTGCTTATGTGGCAGC 59.835 45.455 0.00 0.00 40.90 5.25
2365 3096 2.426024 CAAGATTGCTTATGTGGCAGCT 59.574 45.455 0.00 0.00 40.90 4.24
2366 3097 3.565764 AGATTGCTTATGTGGCAGCTA 57.434 42.857 0.00 0.00 40.90 3.32
2367 3098 3.889815 AGATTGCTTATGTGGCAGCTAA 58.110 40.909 0.00 0.00 40.90 3.09
2368 3099 4.467769 AGATTGCTTATGTGGCAGCTAAT 58.532 39.130 0.00 0.00 40.90 1.73
2369 3100 4.891756 AGATTGCTTATGTGGCAGCTAATT 59.108 37.500 0.00 0.00 40.90 1.40
2370 3101 6.064060 AGATTGCTTATGTGGCAGCTAATTA 58.936 36.000 0.00 0.00 40.90 1.40
2371 3102 6.547141 AGATTGCTTATGTGGCAGCTAATTAA 59.453 34.615 0.00 0.00 40.90 1.40
2372 3103 6.713762 TTGCTTATGTGGCAGCTAATTAAT 57.286 33.333 0.00 0.00 40.90 1.40
2373 3104 6.075762 TGCTTATGTGGCAGCTAATTAATG 57.924 37.500 0.00 0.00 36.92 1.90
2374 3105 5.827267 TGCTTATGTGGCAGCTAATTAATGA 59.173 36.000 0.00 0.00 36.92 2.57
2375 3106 6.016860 TGCTTATGTGGCAGCTAATTAATGAG 60.017 38.462 0.00 0.00 36.92 2.90
2376 3107 6.569226 GCTTATGTGGCAGCTAATTAATGAGG 60.569 42.308 1.84 0.00 32.87 3.86
2377 3108 4.502105 TGTGGCAGCTAATTAATGAGGA 57.498 40.909 1.84 0.00 0.00 3.71
2378 3109 4.454678 TGTGGCAGCTAATTAATGAGGAG 58.545 43.478 1.84 0.00 0.00 3.69
2379 3110 4.164030 TGTGGCAGCTAATTAATGAGGAGA 59.836 41.667 1.84 0.00 0.00 3.71
2380 3111 4.754114 GTGGCAGCTAATTAATGAGGAGAG 59.246 45.833 1.84 0.00 0.00 3.20
2381 3112 4.655649 TGGCAGCTAATTAATGAGGAGAGA 59.344 41.667 1.84 0.00 0.00 3.10
2382 3113 5.221601 TGGCAGCTAATTAATGAGGAGAGAG 60.222 44.000 1.84 0.00 0.00 3.20
2383 3114 5.237048 GCAGCTAATTAATGAGGAGAGAGG 58.763 45.833 1.84 0.00 0.00 3.69
2384 3115 5.792741 CAGCTAATTAATGAGGAGAGAGGG 58.207 45.833 1.84 0.00 0.00 4.30
2385 3116 4.843516 AGCTAATTAATGAGGAGAGAGGGG 59.156 45.833 1.84 0.00 0.00 4.79
2386 3117 4.595350 GCTAATTAATGAGGAGAGAGGGGT 59.405 45.833 1.84 0.00 0.00 4.95
2387 3118 5.072464 GCTAATTAATGAGGAGAGAGGGGTT 59.928 44.000 1.84 0.00 0.00 4.11
2388 3119 6.409810 GCTAATTAATGAGGAGAGAGGGGTTT 60.410 42.308 1.84 0.00 0.00 3.27
2389 3120 4.844349 TTAATGAGGAGAGAGGGGTTTG 57.156 45.455 0.00 0.00 0.00 2.93
2390 3121 2.350863 ATGAGGAGAGAGGGGTTTGT 57.649 50.000 0.00 0.00 0.00 2.83
2391 3122 1.352083 TGAGGAGAGAGGGGTTTGTG 58.648 55.000 0.00 0.00 0.00 3.33
2392 3123 0.615850 GAGGAGAGAGGGGTTTGTGG 59.384 60.000 0.00 0.00 0.00 4.17
2393 3124 0.104409 AGGAGAGAGGGGTTTGTGGT 60.104 55.000 0.00 0.00 0.00 4.16
2394 3125 1.151413 AGGAGAGAGGGGTTTGTGGTA 59.849 52.381 0.00 0.00 0.00 3.25
2395 3126 1.982958 GGAGAGAGGGGTTTGTGGTAA 59.017 52.381 0.00 0.00 0.00 2.85
2396 3127 2.290134 GGAGAGAGGGGTTTGTGGTAAC 60.290 54.545 0.00 0.00 0.00 2.50
2397 3128 2.638363 GAGAGAGGGGTTTGTGGTAACT 59.362 50.000 0.00 0.00 37.61 2.24
2398 3129 3.053826 AGAGAGGGGTTTGTGGTAACTT 58.946 45.455 0.00 0.00 37.61 2.66
2399 3130 4.237018 AGAGAGGGGTTTGTGGTAACTTA 58.763 43.478 0.00 0.00 37.61 2.24
2400 3131 4.286291 AGAGAGGGGTTTGTGGTAACTTAG 59.714 45.833 0.00 0.00 37.61 2.18
2401 3132 3.079578 GAGGGGTTTGTGGTAACTTAGC 58.920 50.000 0.00 0.00 37.61 3.09
2402 3133 2.714793 AGGGGTTTGTGGTAACTTAGCT 59.285 45.455 0.00 0.00 37.61 3.32
2403 3134 3.911894 AGGGGTTTGTGGTAACTTAGCTA 59.088 43.478 0.00 0.00 37.61 3.32
2404 3135 4.019591 AGGGGTTTGTGGTAACTTAGCTAG 60.020 45.833 0.00 0.00 37.61 3.42
2405 3136 4.263199 GGGGTTTGTGGTAACTTAGCTAGT 60.263 45.833 0.00 0.00 39.32 2.57
2407 3138 6.466812 GGGTTTGTGGTAACTTAGCTAGTTA 58.533 40.000 10.09 10.09 45.22 2.24
2419 3150 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
2420 3151 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
2421 3152 8.027771 ACTTAGCTAGTTACTGTAACATCACAC 58.972 37.037 27.12 13.16 41.07 3.82
2422 3153 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
2423 3154 6.936279 AGCTAGTTACTGTAACATCACACAT 58.064 36.000 27.12 10.64 41.07 3.21
2424 3155 7.386851 AGCTAGTTACTGTAACATCACACATT 58.613 34.615 27.12 10.04 41.07 2.71
2425 3156 7.878127 AGCTAGTTACTGTAACATCACACATTT 59.122 33.333 27.12 9.43 41.07 2.32
2426 3157 8.169268 GCTAGTTACTGTAACATCACACATTTC 58.831 37.037 27.12 1.55 41.07 2.17
2427 3158 9.203421 CTAGTTACTGTAACATCACACATTTCA 57.797 33.333 27.12 0.05 41.07 2.69
2428 3159 8.445275 AGTTACTGTAACATCACACATTTCAA 57.555 30.769 27.12 0.00 41.07 2.69
2429 3160 8.559536 AGTTACTGTAACATCACACATTTCAAG 58.440 33.333 27.12 0.00 41.07 3.02
2430 3161 6.317789 ACTGTAACATCACACATTTCAAGG 57.682 37.500 0.00 0.00 0.00 3.61
2431 3162 5.119931 TGTAACATCACACATTTCAAGGC 57.880 39.130 0.00 0.00 0.00 4.35
2432 3163 4.582240 TGTAACATCACACATTTCAAGGCA 59.418 37.500 0.00 0.00 0.00 4.75
2433 3164 4.877378 AACATCACACATTTCAAGGCAT 57.123 36.364 0.00 0.00 0.00 4.40
2434 3165 5.981088 AACATCACACATTTCAAGGCATA 57.019 34.783 0.00 0.00 0.00 3.14
2435 3166 5.981088 ACATCACACATTTCAAGGCATAA 57.019 34.783 0.00 0.00 0.00 1.90
2436 3167 6.534475 ACATCACACATTTCAAGGCATAAT 57.466 33.333 0.00 0.00 0.00 1.28
2437 3168 6.334989 ACATCACACATTTCAAGGCATAATG 58.665 36.000 0.00 0.00 35.82 1.90
2438 3169 6.153170 ACATCACACATTTCAAGGCATAATGA 59.847 34.615 0.00 0.00 34.28 2.57
2439 3170 6.198650 TCACACATTTCAAGGCATAATGAG 57.801 37.500 0.00 0.00 34.28 2.90
2440 3171 5.711506 TCACACATTTCAAGGCATAATGAGT 59.288 36.000 0.00 0.00 34.77 3.41
2441 3172 6.032094 CACACATTTCAAGGCATAATGAGTC 58.968 40.000 0.00 0.00 33.04 3.36
2442 3173 5.948162 ACACATTTCAAGGCATAATGAGTCT 59.052 36.000 0.00 0.00 30.71 3.24
2443 3174 7.066163 CACACATTTCAAGGCATAATGAGTCTA 59.934 37.037 0.00 0.00 33.04 2.59
2444 3175 7.776969 ACACATTTCAAGGCATAATGAGTCTAT 59.223 33.333 0.00 0.00 30.71 1.98
2445 3176 9.276590 CACATTTCAAGGCATAATGAGTCTATA 57.723 33.333 0.00 0.00 34.28 1.31
2446 3177 9.851686 ACATTTCAAGGCATAATGAGTCTATAA 57.148 29.630 0.00 0.00 34.28 0.98
2448 3179 8.677148 TTTCAAGGCATAATGAGTCTATAACC 57.323 34.615 0.00 0.00 0.00 2.85
2449 3180 7.618019 TCAAGGCATAATGAGTCTATAACCT 57.382 36.000 0.00 0.00 0.00 3.50
2450 3181 8.721133 TCAAGGCATAATGAGTCTATAACCTA 57.279 34.615 0.00 0.00 0.00 3.08
2451 3182 9.154632 TCAAGGCATAATGAGTCTATAACCTAA 57.845 33.333 0.00 0.00 0.00 2.69
2452 3183 9.950496 CAAGGCATAATGAGTCTATAACCTAAT 57.050 33.333 0.00 0.00 0.00 1.73
2479 3210 9.739276 AAATAAACTCTTTCATGATACCACTCA 57.261 29.630 0.00 0.00 0.00 3.41
2480 3211 9.911788 AATAAACTCTTTCATGATACCACTCAT 57.088 29.630 0.00 0.00 36.29 2.90
2483 3214 8.899427 AACTCTTTCATGATACCACTCATATG 57.101 34.615 0.00 0.00 34.11 1.78
2484 3215 8.027524 ACTCTTTCATGATACCACTCATATGT 57.972 34.615 1.90 0.00 34.11 2.29
2485 3216 8.489489 ACTCTTTCATGATACCACTCATATGTT 58.511 33.333 1.90 0.00 34.11 2.71
2486 3217 9.987272 CTCTTTCATGATACCACTCATATGTTA 57.013 33.333 1.90 0.00 34.11 2.41
2487 3218 9.764363 TCTTTCATGATACCACTCATATGTTAC 57.236 33.333 1.90 0.00 34.11 2.50
2488 3219 9.770097 CTTTCATGATACCACTCATATGTTACT 57.230 33.333 1.90 0.00 34.11 2.24
2491 3222 8.803235 TCATGATACCACTCATATGTTACTACC 58.197 37.037 1.90 0.00 34.11 3.18
2492 3223 7.534723 TGATACCACTCATATGTTACTACCC 57.465 40.000 1.90 0.00 0.00 3.69
2493 3224 7.070629 TGATACCACTCATATGTTACTACCCA 58.929 38.462 1.90 0.00 0.00 4.51
2494 3225 7.733047 TGATACCACTCATATGTTACTACCCAT 59.267 37.037 1.90 0.00 0.00 4.00
2495 3226 6.824958 ACCACTCATATGTTACTACCCATT 57.175 37.500 1.90 0.00 0.00 3.16
2496 3227 7.924358 ACCACTCATATGTTACTACCCATTA 57.076 36.000 1.90 0.00 0.00 1.90
2497 3228 8.506196 ACCACTCATATGTTACTACCCATTAT 57.494 34.615 1.90 0.00 0.00 1.28
2498 3229 8.375506 ACCACTCATATGTTACTACCCATTATG 58.624 37.037 1.90 0.00 0.00 1.90
2499 3230 7.824289 CCACTCATATGTTACTACCCATTATGG 59.176 40.741 3.85 3.85 37.25 2.74
2500 3231 8.593679 CACTCATATGTTACTACCCATTATGGA 58.406 37.037 13.63 0.00 40.96 3.41
2501 3232 8.816894 ACTCATATGTTACTACCCATTATGGAG 58.183 37.037 13.63 5.60 40.96 3.86
2502 3233 8.146053 TCATATGTTACTACCCATTATGGAGG 57.854 38.462 13.63 4.82 40.96 4.30
2503 3234 7.737607 TCATATGTTACTACCCATTATGGAGGT 59.262 37.037 13.63 10.27 40.96 3.85
2504 3235 9.042450 CATATGTTACTACCCATTATGGAGGTA 57.958 37.037 13.63 9.34 40.96 3.08
2515 3246 9.490083 ACCCATTATGGAGGTAGTAATATAGAC 57.510 37.037 13.63 0.00 40.96 2.59
2516 3247 9.716556 CCCATTATGGAGGTAGTAATATAGACT 57.283 37.037 13.63 0.00 40.96 3.24
2544 3275 9.435802 GTAACATCGACAAGTTACTACTCTATG 57.564 37.037 21.04 0.00 44.04 2.23
2545 3276 7.627298 ACATCGACAAGTTACTACTCTATGT 57.373 36.000 0.00 4.55 31.99 2.29
2546 3277 8.053026 ACATCGACAAGTTACTACTCTATGTT 57.947 34.615 0.00 0.00 31.99 2.71
2547 3278 9.170734 ACATCGACAAGTTACTACTCTATGTTA 57.829 33.333 0.00 0.00 31.99 2.41
2548 3279 9.435802 CATCGACAAGTTACTACTCTATGTTAC 57.564 37.037 0.00 0.00 31.99 2.50
2549 3280 8.783833 TCGACAAGTTACTACTCTATGTTACT 57.216 34.615 0.00 0.00 31.99 2.24
2550 3281 8.877779 TCGACAAGTTACTACTCTATGTTACTC 58.122 37.037 0.00 0.00 31.99 2.59
2551 3282 8.121708 CGACAAGTTACTACTCTATGTTACTCC 58.878 40.741 0.00 0.00 31.99 3.85
2552 3283 8.291191 ACAAGTTACTACTCTATGTTACTCCC 57.709 38.462 0.00 0.00 31.99 4.30
2553 3284 7.341512 ACAAGTTACTACTCTATGTTACTCCCC 59.658 40.741 0.00 0.00 31.99 4.81
2554 3285 6.978261 AGTTACTACTCTATGTTACTCCCCA 58.022 40.000 0.00 0.00 0.00 4.96
2555 3286 6.832900 AGTTACTACTCTATGTTACTCCCCAC 59.167 42.308 0.00 0.00 0.00 4.61
2556 3287 5.469210 ACTACTCTATGTTACTCCCCACT 57.531 43.478 0.00 0.00 0.00 4.00
2557 3288 5.202004 ACTACTCTATGTTACTCCCCACTG 58.798 45.833 0.00 0.00 0.00 3.66
2558 3289 4.062490 ACTCTATGTTACTCCCCACTGT 57.938 45.455 0.00 0.00 0.00 3.55
2559 3290 3.769844 ACTCTATGTTACTCCCCACTGTG 59.230 47.826 0.00 0.00 0.00 3.66
2560 3291 4.023980 CTCTATGTTACTCCCCACTGTGA 58.976 47.826 9.86 0.00 0.00 3.58
2561 3292 4.023980 TCTATGTTACTCCCCACTGTGAG 58.976 47.826 9.86 1.17 34.73 3.51
2562 3293 0.685097 TGTTACTCCCCACTGTGAGC 59.315 55.000 9.86 0.00 31.65 4.26
2563 3294 0.685097 GTTACTCCCCACTGTGAGCA 59.315 55.000 9.86 0.00 31.65 4.26
2572 3303 4.165866 CTGTGAGCAGTCTGAGCG 57.834 61.111 3.32 0.00 37.92 5.03
2573 3304 1.583477 CTGTGAGCAGTCTGAGCGA 59.417 57.895 3.32 0.00 37.92 4.93
2589 3320 1.501741 CGACCATTTGCCTTCACCG 59.498 57.895 0.00 0.00 0.00 4.94
2590 3321 1.883021 GACCATTTGCCTTCACCGG 59.117 57.895 0.00 0.00 0.00 5.28
2605 3336 2.438954 CCGGCCGACGTTAGTTTCG 61.439 63.158 30.73 0.00 42.24 3.46
2635 3366 3.064207 TCGTGATACCAAAGCAACAGTC 58.936 45.455 0.00 0.00 0.00 3.51
2637 3368 3.498397 CGTGATACCAAAGCAACAGTCTT 59.502 43.478 0.00 0.00 0.00 3.01
2639 3370 3.820467 TGATACCAAAGCAACAGTCTTGG 59.180 43.478 0.00 0.00 0.00 3.61
2646 3377 1.941812 CAACAGTCTTGGTGCGACC 59.058 57.895 0.00 0.00 34.76 4.79
2650 3381 1.594293 AGTCTTGGTGCGACCGTTG 60.594 57.895 0.00 0.00 42.58 4.10
2651 3382 1.593209 GTCTTGGTGCGACCGTTGA 60.593 57.895 0.00 0.00 42.58 3.18
2652 3383 0.949105 GTCTTGGTGCGACCGTTGAT 60.949 55.000 0.00 0.00 42.58 2.57
2655 3386 0.533085 TTGGTGCGACCGTTGATTCA 60.533 50.000 0.00 0.00 42.58 2.57
2657 3388 0.669318 GGTGCGACCGTTGATTCAGA 60.669 55.000 0.00 0.00 0.00 3.27
2659 3390 2.536365 GTGCGACCGTTGATTCAGATA 58.464 47.619 0.00 0.00 0.00 1.98
2661 3392 3.182572 GTGCGACCGTTGATTCAGATATC 59.817 47.826 0.00 0.00 0.00 1.63
2665 3396 2.963101 ACCGTTGATTCAGATATCGGGA 59.037 45.455 2.90 0.00 40.60 5.14
2667 3398 4.040461 ACCGTTGATTCAGATATCGGGAAT 59.960 41.667 19.31 19.31 40.60 3.01
2675 3406 5.614324 TCAGATATCGGGAATGTGTTCTT 57.386 39.130 2.90 0.00 34.68 2.52
2683 3414 3.181480 CGGGAATGTGTTCTTTGTTGGTT 60.181 43.478 0.00 0.00 34.68 3.67
2690 3421 6.870971 TGTGTTCTTTGTTGGTTAGTATCC 57.129 37.500 0.00 0.00 0.00 2.59
2716 3447 3.290948 TGGCTGTTTTACCTTGACACT 57.709 42.857 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 3.926729 AGGTCGCTCCTATCCAGAA 57.073 52.632 0.00 0.00 46.10 3.02
232 234 1.039068 TACGAAAGGTCACGTGGGAA 58.961 50.000 17.00 0.00 42.61 3.97
267 269 6.998673 AGCCTAGCCGATATCTAAATTTTTGT 59.001 34.615 0.00 0.00 0.00 2.83
288 290 2.044946 GGTTGCGGGAATGAGCCT 60.045 61.111 0.00 0.00 0.00 4.58
524 552 7.489239 TTTTAGGCAGCCCAATAACTATTTT 57.511 32.000 8.22 0.00 0.00 1.82
544 572 8.447833 CGTTGTGCTGGAATTTAGTCTATTTTA 58.552 33.333 0.00 0.00 0.00 1.52
581 609 4.751060 TGTCACGTAACAGACTGAAACTT 58.249 39.130 10.08 0.00 35.81 2.66
591 619 4.045104 GAGCATATCCTGTCACGTAACAG 58.955 47.826 12.20 12.20 45.10 3.16
624 689 6.441093 TGCATCAGTTCAGATAATTCCAAC 57.559 37.500 0.00 0.00 0.00 3.77
626 691 6.038936 CACATGCATCAGTTCAGATAATTCCA 59.961 38.462 0.00 0.00 0.00 3.53
658 723 8.527810 GGGAACAGAAATGTGTTGGAAATATTA 58.472 33.333 0.18 0.00 40.83 0.98
671 736 5.012354 TCGTAACCTTAGGGAACAGAAATGT 59.988 40.000 2.32 0.00 36.25 2.71
689 754 2.536803 TCTTCACAGCGTGTTTCGTAAC 59.463 45.455 8.22 0.00 42.13 2.50
690 755 2.811855 TCTTCACAGCGTGTTTCGTAA 58.188 42.857 8.22 0.00 42.13 3.18
693 758 2.563976 CATTCTTCACAGCGTGTTTCG 58.436 47.619 8.22 0.00 43.12 3.46
716 781 4.400251 ACACATGTCCCAAAATCTATGCAG 59.600 41.667 0.00 0.00 0.00 4.41
728 793 0.107643 TTTCGCTCACACATGTCCCA 59.892 50.000 0.00 0.00 0.00 4.37
729 794 0.517316 GTTTCGCTCACACATGTCCC 59.483 55.000 0.00 0.00 0.00 4.46
731 796 2.287915 ACTTGTTTCGCTCACACATGTC 59.712 45.455 0.00 0.00 0.00 3.06
732 797 2.288666 ACTTGTTTCGCTCACACATGT 58.711 42.857 0.00 0.00 0.00 3.21
733 798 4.211164 TCTTACTTGTTTCGCTCACACATG 59.789 41.667 0.00 0.00 0.00 3.21
734 799 4.211374 GTCTTACTTGTTTCGCTCACACAT 59.789 41.667 0.00 0.00 0.00 3.21
735 800 3.554324 GTCTTACTTGTTTCGCTCACACA 59.446 43.478 0.00 0.00 0.00 3.72
736 801 3.554324 TGTCTTACTTGTTTCGCTCACAC 59.446 43.478 0.00 0.00 0.00 3.82
738 803 4.049186 TCTGTCTTACTTGTTTCGCTCAC 58.951 43.478 0.00 0.00 0.00 3.51
740 805 4.299978 ACTCTGTCTTACTTGTTTCGCTC 58.700 43.478 0.00 0.00 0.00 5.03
741 806 4.202121 TGACTCTGTCTTACTTGTTTCGCT 60.202 41.667 0.00 0.00 33.15 4.93
742 807 4.049186 TGACTCTGTCTTACTTGTTTCGC 58.951 43.478 0.00 0.00 33.15 4.70
743 808 6.771188 AATGACTCTGTCTTACTTGTTTCG 57.229 37.500 0.00 0.00 33.15 3.46
768 833 4.627058 CGGTGTAAGGAAAATGGCTTTTT 58.373 39.130 10.49 10.49 40.25 1.94
781 1333 0.177373 GGTCTAAGGGCGGTGTAAGG 59.823 60.000 0.00 0.00 0.00 2.69
782 1334 0.899720 TGGTCTAAGGGCGGTGTAAG 59.100 55.000 0.00 0.00 0.00 2.34
796 1390 1.065410 TTGGTGATGGGGTGTGGTCT 61.065 55.000 0.00 0.00 0.00 3.85
821 1420 2.033448 TGTGTGGGGATCGCCAAC 59.967 61.111 31.10 26.99 35.15 3.77
843 1442 0.102300 GACAAGTGTGGTTGGTTGGC 59.898 55.000 0.00 0.00 0.00 4.52
888 1500 0.389166 GGCAAGGTGAGACGAGACTG 60.389 60.000 0.00 0.00 0.00 3.51
911 1523 1.677633 GGTCGGTGGTTGGATTGGG 60.678 63.158 0.00 0.00 0.00 4.12
914 1526 0.034477 GGATGGTCGGTGGTTGGATT 60.034 55.000 0.00 0.00 0.00 3.01
962 1579 1.211456 CTTGGCTGAGAAGGGAGGAT 58.789 55.000 0.00 0.00 0.00 3.24
963 1580 1.557269 GCTTGGCTGAGAAGGGAGGA 61.557 60.000 0.00 0.00 0.00 3.71
964 1581 1.077858 GCTTGGCTGAGAAGGGAGG 60.078 63.158 0.00 0.00 0.00 4.30
965 1582 0.037303 TTGCTTGGCTGAGAAGGGAG 59.963 55.000 0.00 0.00 0.00 4.30
990 1607 2.509336 CTCTTCATCGGCGCGGTT 60.509 61.111 15.06 3.57 0.00 4.44
994 1611 2.279784 CTCCCTCTTCATCGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
1033 1658 2.193536 GCTTGTTGCGGTTGACCCT 61.194 57.895 0.00 0.00 0.00 4.34
1344 1969 4.832608 GCGCCCTTGTAGTCGGGG 62.833 72.222 0.00 0.00 40.95 5.73
1428 2053 1.313091 CGTCCTGGTCCTCATCGTCA 61.313 60.000 0.00 0.00 0.00 4.35
1482 2110 1.092348 CGATGAGGTCGTACAGGTCA 58.908 55.000 0.00 0.00 45.19 4.02
1623 2257 2.344872 TCGTCCTCCTCGTCGACA 59.655 61.111 17.16 1.87 0.00 4.35
1625 2259 2.812609 CGTCGTCCTCCTCGTCGA 60.813 66.667 0.00 0.00 40.70 4.20
1688 2331 4.779733 TCCAGTCCTCCTCCCCGC 62.780 72.222 0.00 0.00 0.00 6.13
1765 2423 3.474570 GCAGAGGCGGAGGGATGT 61.475 66.667 0.00 0.00 0.00 3.06
1836 2497 0.249868 ACACACACAGGGACACGATG 60.250 55.000 0.00 0.00 0.00 3.84
1847 2508 4.306600 CAACAGAGCAGTATACACACACA 58.693 43.478 5.50 0.00 0.00 3.72
1848 2509 3.123621 GCAACAGAGCAGTATACACACAC 59.876 47.826 5.50 0.00 0.00 3.82
1883 2548 5.775195 TCACCAGATATATACACAGGGACAG 59.225 44.000 0.00 0.00 0.00 3.51
1990 2655 5.493353 CAGGGTCTGAAGACGAATGAATCG 61.493 50.000 4.44 0.00 44.98 3.34
2000 2665 3.071747 AGGAAGAAACAGGGTCTGAAGAC 59.928 47.826 1.63 1.63 44.04 3.01
2020 2685 4.750021 TCCATTCAGTCAATCAGAGAGG 57.250 45.455 0.00 0.00 0.00 3.69
2023 2688 5.032327 TCCATCCATTCAGTCAATCAGAG 57.968 43.478 0.00 0.00 0.00 3.35
2061 2746 2.290641 TGCGCATTTAGAAAGAGGGGAA 60.291 45.455 5.66 0.00 0.00 3.97
2064 2749 2.359900 AGTGCGCATTTAGAAAGAGGG 58.640 47.619 15.91 0.00 0.00 4.30
2065 2750 4.083324 TGAAAGTGCGCATTTAGAAAGAGG 60.083 41.667 19.04 0.00 0.00 3.69
2066 2751 5.034554 TGAAAGTGCGCATTTAGAAAGAG 57.965 39.130 19.04 0.00 0.00 2.85
2074 2803 6.650390 AGGAAATTAATTGAAAGTGCGCATTT 59.350 30.769 15.91 14.23 0.00 2.32
2075 2804 6.165577 AGGAAATTAATTGAAAGTGCGCATT 58.834 32.000 15.91 6.43 0.00 3.56
2077 2806 5.132897 AGGAAATTAATTGAAAGTGCGCA 57.867 34.783 5.66 5.66 0.00 6.09
2079 2808 6.640499 TGACAAGGAAATTAATTGAAAGTGCG 59.360 34.615 0.39 0.00 0.00 5.34
2087 2816 9.442047 AGTCTCTACTGACAAGGAAATTAATTG 57.558 33.333 0.39 0.00 39.27 2.32
2092 2821 8.697292 GGTATAGTCTCTACTGACAAGGAAATT 58.303 37.037 0.00 0.00 39.27 1.82
2101 2830 7.880713 TCAGATCATGGTATAGTCTCTACTGAC 59.119 40.741 0.00 0.00 36.36 3.51
2103 2832 8.628630 TTCAGATCATGGTATAGTCTCTACTG 57.371 38.462 0.00 0.00 36.36 2.74
2104 2833 9.241919 CATTCAGATCATGGTATAGTCTCTACT 57.758 37.037 0.00 0.00 39.91 2.57
2105 2834 8.465999 CCATTCAGATCATGGTATAGTCTCTAC 58.534 40.741 0.00 0.00 37.07 2.59
2115 2846 4.562143 CGATCAGCCATTCAGATCATGGTA 60.562 45.833 11.17 0.55 43.01 3.25
2117 2848 2.742589 CGATCAGCCATTCAGATCATGG 59.257 50.000 6.24 6.24 43.81 3.66
2118 2849 2.742589 CCGATCAGCCATTCAGATCATG 59.257 50.000 0.00 0.00 37.51 3.07
2152 2883 9.918630 CAAGAACTGAATTTACCAGATTTCATT 57.081 29.630 0.00 0.00 35.69 2.57
2165 2896 4.859304 TGCTGCATCAAGAACTGAATTT 57.141 36.364 0.00 0.00 37.67 1.82
2192 2923 8.631480 ATGCTTGCATCTATCATTCTCAATAA 57.369 30.769 1.81 0.00 0.00 1.40
2194 2925 7.371159 CAATGCTTGCATCTATCATTCTCAAT 58.629 34.615 8.64 0.00 0.00 2.57
2196 2927 6.313744 CAATGCTTGCATCTATCATTCTCA 57.686 37.500 8.64 0.00 0.00 3.27
2216 2947 3.553922 GCTAGAGATGCTCTAACCGCAAT 60.554 47.826 5.75 0.00 41.74 3.56
2217 2948 2.223829 GCTAGAGATGCTCTAACCGCAA 60.224 50.000 5.75 0.00 41.74 4.85
2220 2951 1.957177 TGGCTAGAGATGCTCTAACCG 59.043 52.381 15.39 3.28 46.54 4.44
2243 2974 8.635765 TGCTTCTTGTTATAAAGATTTGAGGT 57.364 30.769 0.00 0.00 36.12 3.85
2265 2996 7.981225 ACAGAAAAATTACAGACACAATTTGCT 59.019 29.630 0.00 0.00 35.19 3.91
2278 3009 6.530120 TGGCTAGTCTCACAGAAAAATTACA 58.470 36.000 0.00 0.00 0.00 2.41
2280 3011 9.905713 ATTATGGCTAGTCTCACAGAAAAATTA 57.094 29.630 0.00 0.00 0.00 1.40
2295 3026 7.347485 AGTTAAGTTACTCCCATTATGGCTAGT 59.653 37.037 17.50 17.50 35.79 2.57
2296 3027 7.736893 AGTTAAGTTACTCCCATTATGGCTAG 58.263 38.462 5.57 7.90 35.79 3.42
2297 3028 7.685849 AGTTAAGTTACTCCCATTATGGCTA 57.314 36.000 5.57 0.00 35.79 3.93
2298 3029 6.576778 AGTTAAGTTACTCCCATTATGGCT 57.423 37.500 5.57 0.00 35.79 4.75
2299 3030 7.506971 ACTAGTTAAGTTACTCCCATTATGGC 58.493 38.462 5.57 0.00 32.77 4.40
2305 3036 9.263446 TGATGTTACTAGTTAAGTTACTCCCAT 57.737 33.333 0.00 0.00 38.33 4.00
2306 3037 8.526147 GTGATGTTACTAGTTAAGTTACTCCCA 58.474 37.037 0.00 0.00 38.33 4.37
2307 3038 8.526147 TGTGATGTTACTAGTTAAGTTACTCCC 58.474 37.037 0.00 0.00 38.33 4.30
2308 3039 9.351570 GTGTGATGTTACTAGTTAAGTTACTCC 57.648 37.037 0.00 0.00 38.33 3.85
2309 3040 9.903682 TGTGTGATGTTACTAGTTAAGTTACTC 57.096 33.333 0.00 0.00 38.33 2.59
2314 3045 9.772973 TGAAATGTGTGATGTTACTAGTTAAGT 57.227 29.630 0.00 0.00 42.62 2.24
2319 3050 9.719355 TGTATTGAAATGTGTGATGTTACTAGT 57.281 29.630 0.00 0.00 0.00 2.57
2322 3053 9.283768 TCTTGTATTGAAATGTGTGATGTTACT 57.716 29.630 0.00 0.00 0.00 2.24
2325 3056 9.414295 CAATCTTGTATTGAAATGTGTGATGTT 57.586 29.630 0.00 0.00 0.00 2.71
2326 3057 7.543172 GCAATCTTGTATTGAAATGTGTGATGT 59.457 33.333 2.01 0.00 0.00 3.06
2327 3058 7.758076 AGCAATCTTGTATTGAAATGTGTGATG 59.242 33.333 2.01 0.00 0.00 3.07
2328 3059 7.833786 AGCAATCTTGTATTGAAATGTGTGAT 58.166 30.769 2.01 0.00 0.00 3.06
2329 3060 7.218228 AGCAATCTTGTATTGAAATGTGTGA 57.782 32.000 2.01 0.00 0.00 3.58
2330 3061 7.878477 AAGCAATCTTGTATTGAAATGTGTG 57.122 32.000 2.01 0.00 0.00 3.82
2331 3062 9.577110 CATAAGCAATCTTGTATTGAAATGTGT 57.423 29.630 2.01 0.00 33.85 3.72
2332 3063 9.577110 ACATAAGCAATCTTGTATTGAAATGTG 57.423 29.630 2.01 0.00 31.88 3.21
2333 3064 9.577110 CACATAAGCAATCTTGTATTGAAATGT 57.423 29.630 2.01 5.07 32.55 2.71
2334 3065 9.027129 CCACATAAGCAATCTTGTATTGAAATG 57.973 33.333 2.01 4.57 33.85 2.32
2335 3066 7.707893 GCCACATAAGCAATCTTGTATTGAAAT 59.292 33.333 2.01 0.00 33.85 2.17
2336 3067 7.035004 GCCACATAAGCAATCTTGTATTGAAA 58.965 34.615 2.01 0.00 33.85 2.69
2337 3068 6.152492 TGCCACATAAGCAATCTTGTATTGAA 59.848 34.615 2.01 0.00 37.28 2.69
2338 3069 5.651576 TGCCACATAAGCAATCTTGTATTGA 59.348 36.000 2.01 0.00 37.28 2.57
2339 3070 5.893687 TGCCACATAAGCAATCTTGTATTG 58.106 37.500 0.00 0.00 37.28 1.90
2340 3071 5.450965 GCTGCCACATAAGCAATCTTGTATT 60.451 40.000 0.00 0.00 40.35 1.89
2341 3072 4.037208 GCTGCCACATAAGCAATCTTGTAT 59.963 41.667 0.00 0.00 40.35 2.29
2342 3073 3.378112 GCTGCCACATAAGCAATCTTGTA 59.622 43.478 0.00 0.00 40.35 2.41
2343 3074 2.165030 GCTGCCACATAAGCAATCTTGT 59.835 45.455 0.00 0.00 40.35 3.16
2344 3075 2.426024 AGCTGCCACATAAGCAATCTTG 59.574 45.455 0.00 0.00 42.06 3.02
2345 3076 2.731572 AGCTGCCACATAAGCAATCTT 58.268 42.857 0.00 0.00 42.06 2.40
2346 3077 2.431954 AGCTGCCACATAAGCAATCT 57.568 45.000 0.00 0.00 42.06 2.40
2347 3078 4.843220 ATTAGCTGCCACATAAGCAATC 57.157 40.909 0.00 0.00 42.06 2.67
2348 3079 6.713762 TTAATTAGCTGCCACATAAGCAAT 57.286 33.333 0.00 0.00 42.06 3.56
2349 3080 6.320926 TCATTAATTAGCTGCCACATAAGCAA 59.679 34.615 0.00 0.00 42.06 3.91
2350 3081 5.827267 TCATTAATTAGCTGCCACATAAGCA 59.173 36.000 0.00 0.00 42.06 3.91
2351 3082 6.317789 TCATTAATTAGCTGCCACATAAGC 57.682 37.500 0.00 0.00 39.82 3.09
2352 3083 6.712095 TCCTCATTAATTAGCTGCCACATAAG 59.288 38.462 0.00 0.00 0.00 1.73
2353 3084 6.600388 TCCTCATTAATTAGCTGCCACATAA 58.400 36.000 0.00 0.00 0.00 1.90
2354 3085 6.043127 TCTCCTCATTAATTAGCTGCCACATA 59.957 38.462 0.00 0.00 0.00 2.29
2355 3086 5.052693 TCCTCATTAATTAGCTGCCACAT 57.947 39.130 0.00 0.00 0.00 3.21
2356 3087 4.164030 TCTCCTCATTAATTAGCTGCCACA 59.836 41.667 0.00 0.00 0.00 4.17
2357 3088 4.708177 TCTCCTCATTAATTAGCTGCCAC 58.292 43.478 0.00 0.00 0.00 5.01
2358 3089 4.655649 TCTCTCCTCATTAATTAGCTGCCA 59.344 41.667 0.00 0.00 0.00 4.92
2359 3090 5.220710 TCTCTCCTCATTAATTAGCTGCC 57.779 43.478 0.00 0.00 0.00 4.85
2360 3091 5.237048 CCTCTCTCCTCATTAATTAGCTGC 58.763 45.833 0.00 0.00 0.00 5.25
2361 3092 5.279910 CCCCTCTCTCCTCATTAATTAGCTG 60.280 48.000 0.00 0.00 0.00 4.24
2362 3093 4.843516 CCCCTCTCTCCTCATTAATTAGCT 59.156 45.833 0.00 0.00 0.00 3.32
2363 3094 4.595350 ACCCCTCTCTCCTCATTAATTAGC 59.405 45.833 0.00 0.00 0.00 3.09
2364 3095 6.755542 AACCCCTCTCTCCTCATTAATTAG 57.244 41.667 0.00 0.00 0.00 1.73
2365 3096 6.447084 ACAAACCCCTCTCTCCTCATTAATTA 59.553 38.462 0.00 0.00 0.00 1.40
2366 3097 5.254032 ACAAACCCCTCTCTCCTCATTAATT 59.746 40.000 0.00 0.00 0.00 1.40
2367 3098 4.790790 ACAAACCCCTCTCTCCTCATTAAT 59.209 41.667 0.00 0.00 0.00 1.40
2368 3099 4.019321 CACAAACCCCTCTCTCCTCATTAA 60.019 45.833 0.00 0.00 0.00 1.40
2369 3100 3.519510 CACAAACCCCTCTCTCCTCATTA 59.480 47.826 0.00 0.00 0.00 1.90
2370 3101 2.307098 CACAAACCCCTCTCTCCTCATT 59.693 50.000 0.00 0.00 0.00 2.57
2371 3102 1.912043 CACAAACCCCTCTCTCCTCAT 59.088 52.381 0.00 0.00 0.00 2.90
2372 3103 1.352083 CACAAACCCCTCTCTCCTCA 58.648 55.000 0.00 0.00 0.00 3.86
2373 3104 0.615850 CCACAAACCCCTCTCTCCTC 59.384 60.000 0.00 0.00 0.00 3.71
2374 3105 0.104409 ACCACAAACCCCTCTCTCCT 60.104 55.000 0.00 0.00 0.00 3.69
2375 3106 1.652947 TACCACAAACCCCTCTCTCC 58.347 55.000 0.00 0.00 0.00 3.71
2376 3107 2.638363 AGTTACCACAAACCCCTCTCTC 59.362 50.000 0.00 0.00 0.00 3.20
2377 3108 2.702748 AGTTACCACAAACCCCTCTCT 58.297 47.619 0.00 0.00 0.00 3.10
2378 3109 3.503800 AAGTTACCACAAACCCCTCTC 57.496 47.619 0.00 0.00 0.00 3.20
2379 3110 3.244805 GCTAAGTTACCACAAACCCCTCT 60.245 47.826 0.00 0.00 0.00 3.69
2380 3111 3.079578 GCTAAGTTACCACAAACCCCTC 58.920 50.000 0.00 0.00 0.00 4.30
2381 3112 2.714793 AGCTAAGTTACCACAAACCCCT 59.285 45.455 0.00 0.00 0.00 4.79
2382 3113 3.150458 AGCTAAGTTACCACAAACCCC 57.850 47.619 0.00 0.00 0.00 4.95
2383 3114 4.903054 ACTAGCTAAGTTACCACAAACCC 58.097 43.478 0.00 0.00 33.35 4.11
2395 3126 8.027771 GTGTGATGTTACAGTAACTAGCTAAGT 58.972 37.037 21.56 0.00 41.49 2.24
2396 3127 8.027189 TGTGTGATGTTACAGTAACTAGCTAAG 58.973 37.037 21.56 0.00 39.38 2.18
2397 3128 7.888424 TGTGTGATGTTACAGTAACTAGCTAA 58.112 34.615 21.56 3.59 39.38 3.09
2398 3129 7.457024 TGTGTGATGTTACAGTAACTAGCTA 57.543 36.000 21.56 4.25 39.38 3.32
2399 3130 6.340962 TGTGTGATGTTACAGTAACTAGCT 57.659 37.500 21.56 6.57 39.38 3.32
2400 3131 7.596749 AATGTGTGATGTTACAGTAACTAGC 57.403 36.000 21.56 12.59 39.38 3.42
2401 3132 9.203421 TGAAATGTGTGATGTTACAGTAACTAG 57.797 33.333 21.56 0.00 39.38 2.57
2402 3133 9.549078 TTGAAATGTGTGATGTTACAGTAACTA 57.451 29.630 21.56 10.50 39.38 2.24
2403 3134 8.445275 TTGAAATGTGTGATGTTACAGTAACT 57.555 30.769 21.56 9.41 39.38 2.24
2404 3135 7.803189 CCTTGAAATGTGTGATGTTACAGTAAC 59.197 37.037 15.58 15.58 39.11 2.50
2405 3136 7.521423 GCCTTGAAATGTGTGATGTTACAGTAA 60.521 37.037 0.00 0.00 0.00 2.24
2406 3137 6.072728 GCCTTGAAATGTGTGATGTTACAGTA 60.073 38.462 0.00 0.00 0.00 2.74
2407 3138 5.278463 GCCTTGAAATGTGTGATGTTACAGT 60.278 40.000 0.00 0.00 0.00 3.55
2408 3139 5.156355 GCCTTGAAATGTGTGATGTTACAG 58.844 41.667 0.00 0.00 0.00 2.74
2409 3140 4.582240 TGCCTTGAAATGTGTGATGTTACA 59.418 37.500 0.00 0.00 0.00 2.41
2410 3141 5.119931 TGCCTTGAAATGTGTGATGTTAC 57.880 39.130 0.00 0.00 0.00 2.50
2411 3142 5.981088 ATGCCTTGAAATGTGTGATGTTA 57.019 34.783 0.00 0.00 0.00 2.41
2412 3143 4.877378 ATGCCTTGAAATGTGTGATGTT 57.123 36.364 0.00 0.00 0.00 2.71
2413 3144 5.981088 TTATGCCTTGAAATGTGTGATGT 57.019 34.783 0.00 0.00 0.00 3.06
2414 3145 6.566141 TCATTATGCCTTGAAATGTGTGATG 58.434 36.000 0.00 0.00 33.35 3.07
2415 3146 6.379133 ACTCATTATGCCTTGAAATGTGTGAT 59.621 34.615 0.00 0.00 36.51 3.06
2416 3147 5.711506 ACTCATTATGCCTTGAAATGTGTGA 59.288 36.000 0.00 0.00 36.51 3.58
2417 3148 5.957798 ACTCATTATGCCTTGAAATGTGTG 58.042 37.500 0.00 0.00 36.51 3.82
2418 3149 5.948162 AGACTCATTATGCCTTGAAATGTGT 59.052 36.000 0.00 0.00 39.01 3.72
2419 3150 6.446781 AGACTCATTATGCCTTGAAATGTG 57.553 37.500 0.00 0.00 33.35 3.21
2420 3151 9.851686 TTATAGACTCATTATGCCTTGAAATGT 57.148 29.630 0.00 0.00 33.35 2.71
2422 3153 9.289782 GGTTATAGACTCATTATGCCTTGAAAT 57.710 33.333 0.00 0.00 0.00 2.17
2423 3154 8.494433 AGGTTATAGACTCATTATGCCTTGAAA 58.506 33.333 0.00 0.00 0.00 2.69
2424 3155 8.034313 AGGTTATAGACTCATTATGCCTTGAA 57.966 34.615 0.00 0.00 0.00 2.69
2425 3156 7.618019 AGGTTATAGACTCATTATGCCTTGA 57.382 36.000 0.00 0.00 0.00 3.02
2426 3157 9.950496 ATTAGGTTATAGACTCATTATGCCTTG 57.050 33.333 0.00 0.00 0.00 3.61
2453 3184 9.739276 TGAGTGGTATCATGAAAGAGTTTATTT 57.261 29.630 0.00 0.00 0.00 1.40
2454 3185 9.911788 ATGAGTGGTATCATGAAAGAGTTTATT 57.088 29.630 0.00 0.00 38.49 1.40
2457 3188 9.334947 CATATGAGTGGTATCATGAAAGAGTTT 57.665 33.333 0.00 0.00 40.16 2.66
2458 3189 8.489489 ACATATGAGTGGTATCATGAAAGAGTT 58.511 33.333 10.38 0.00 40.16 3.01
2459 3190 8.027524 ACATATGAGTGGTATCATGAAAGAGT 57.972 34.615 10.38 0.00 40.16 3.24
2460 3191 8.899427 AACATATGAGTGGTATCATGAAAGAG 57.101 34.615 10.38 0.00 40.16 2.85
2461 3192 9.764363 GTAACATATGAGTGGTATCATGAAAGA 57.236 33.333 10.38 0.00 40.16 2.52
2462 3193 9.770097 AGTAACATATGAGTGGTATCATGAAAG 57.230 33.333 10.38 0.00 40.16 2.62
2465 3196 8.803235 GGTAGTAACATATGAGTGGTATCATGA 58.197 37.037 10.38 0.00 40.16 3.07
2466 3197 8.035394 GGGTAGTAACATATGAGTGGTATCATG 58.965 40.741 10.38 0.00 40.16 3.07
2467 3198 7.733047 TGGGTAGTAACATATGAGTGGTATCAT 59.267 37.037 10.38 0.00 42.52 2.45
2468 3199 7.070629 TGGGTAGTAACATATGAGTGGTATCA 58.929 38.462 10.38 0.00 0.00 2.15
2469 3200 7.534723 TGGGTAGTAACATATGAGTGGTATC 57.465 40.000 10.38 0.00 0.00 2.24
2470 3201 8.506196 AATGGGTAGTAACATATGAGTGGTAT 57.494 34.615 10.38 0.00 0.00 2.73
2471 3202 7.924358 AATGGGTAGTAACATATGAGTGGTA 57.076 36.000 10.38 0.00 0.00 3.25
2472 3203 6.824958 AATGGGTAGTAACATATGAGTGGT 57.175 37.500 10.38 0.00 0.00 4.16
2473 3204 7.824289 CCATAATGGGTAGTAACATATGAGTGG 59.176 40.741 10.38 0.00 32.67 4.00
2474 3205 8.593679 TCCATAATGGGTAGTAACATATGAGTG 58.406 37.037 10.38 0.00 38.32 3.51
2475 3206 8.736097 TCCATAATGGGTAGTAACATATGAGT 57.264 34.615 10.38 0.00 38.32 3.41
2476 3207 8.260818 CCTCCATAATGGGTAGTAACATATGAG 58.739 40.741 10.38 0.00 38.32 2.90
2477 3208 7.737607 ACCTCCATAATGGGTAGTAACATATGA 59.262 37.037 10.38 0.00 38.32 2.15
2478 3209 7.918076 ACCTCCATAATGGGTAGTAACATATG 58.082 38.462 0.00 0.00 38.32 1.78
2479 3210 9.268282 CTACCTCCATAATGGGTAGTAACATAT 57.732 37.037 9.46 0.00 44.30 1.78
2480 3211 8.660295 CTACCTCCATAATGGGTAGTAACATA 57.340 38.462 9.46 0.00 44.30 2.29
2481 3212 7.554959 CTACCTCCATAATGGGTAGTAACAT 57.445 40.000 9.46 0.00 44.30 2.71
2482 3213 6.989155 CTACCTCCATAATGGGTAGTAACA 57.011 41.667 9.46 0.00 44.30 2.41
2489 3220 9.490083 GTCTATATTACTACCTCCATAATGGGT 57.510 37.037 0.00 0.00 38.32 4.51
2490 3221 9.716556 AGTCTATATTACTACCTCCATAATGGG 57.283 37.037 0.00 0.00 38.32 4.00
2518 3249 9.435802 CATAGAGTAGTAACTTGTCGATGTTAC 57.564 37.037 21.04 21.04 45.03 2.50
2519 3250 9.170734 ACATAGAGTAGTAACTTGTCGATGTTA 57.829 33.333 0.00 0.00 35.56 2.41
2520 3251 8.053026 ACATAGAGTAGTAACTTGTCGATGTT 57.947 34.615 0.00 0.00 35.56 2.71
2521 3252 7.627298 ACATAGAGTAGTAACTTGTCGATGT 57.373 36.000 0.00 0.00 35.56 3.06
2522 3253 9.435802 GTAACATAGAGTAGTAACTTGTCGATG 57.564 37.037 0.00 0.00 35.56 3.84
2523 3254 9.393512 AGTAACATAGAGTAGTAACTTGTCGAT 57.606 33.333 0.00 0.00 35.56 3.59
2524 3255 8.783833 AGTAACATAGAGTAGTAACTTGTCGA 57.216 34.615 0.00 0.00 35.56 4.20
2525 3256 8.121708 GGAGTAACATAGAGTAGTAACTTGTCG 58.878 40.741 0.00 0.00 35.56 4.35
2526 3257 8.404765 GGGAGTAACATAGAGTAGTAACTTGTC 58.595 40.741 0.00 0.00 35.56 3.18
2527 3258 7.341512 GGGGAGTAACATAGAGTAGTAACTTGT 59.658 40.741 0.00 0.00 35.56 3.16
2528 3259 7.341256 TGGGGAGTAACATAGAGTAGTAACTTG 59.659 40.741 0.00 0.00 35.56 3.16
2529 3260 7.341512 GTGGGGAGTAACATAGAGTAGTAACTT 59.658 40.741 0.00 0.00 35.56 2.66
2530 3261 6.832900 GTGGGGAGTAACATAGAGTAGTAACT 59.167 42.308 0.00 0.00 39.21 2.24
2531 3262 6.832900 AGTGGGGAGTAACATAGAGTAGTAAC 59.167 42.308 0.00 0.00 0.00 2.50
2532 3263 6.832384 CAGTGGGGAGTAACATAGAGTAGTAA 59.168 42.308 0.00 0.00 0.00 2.24
2533 3264 6.069206 ACAGTGGGGAGTAACATAGAGTAGTA 60.069 42.308 0.00 0.00 0.00 1.82
2534 3265 5.202004 CAGTGGGGAGTAACATAGAGTAGT 58.798 45.833 0.00 0.00 0.00 2.73
2535 3266 5.067936 CACAGTGGGGAGTAACATAGAGTAG 59.932 48.000 0.00 0.00 0.00 2.57
2536 3267 4.954202 CACAGTGGGGAGTAACATAGAGTA 59.046 45.833 0.00 0.00 0.00 2.59
2537 3268 3.769844 CACAGTGGGGAGTAACATAGAGT 59.230 47.826 0.00 0.00 0.00 3.24
2538 3269 4.023980 TCACAGTGGGGAGTAACATAGAG 58.976 47.826 0.00 0.00 0.00 2.43
2539 3270 4.023980 CTCACAGTGGGGAGTAACATAGA 58.976 47.826 0.00 0.00 0.00 1.98
2540 3271 3.430929 GCTCACAGTGGGGAGTAACATAG 60.431 52.174 1.60 0.00 33.66 2.23
2541 3272 2.500098 GCTCACAGTGGGGAGTAACATA 59.500 50.000 1.60 0.00 33.66 2.29
2542 3273 1.279271 GCTCACAGTGGGGAGTAACAT 59.721 52.381 1.60 0.00 33.66 2.71
2543 3274 0.685097 GCTCACAGTGGGGAGTAACA 59.315 55.000 1.60 0.00 33.66 2.41
2544 3275 0.685097 TGCTCACAGTGGGGAGTAAC 59.315 55.000 1.60 1.34 33.66 2.50
2545 3276 0.976641 CTGCTCACAGTGGGGAGTAA 59.023 55.000 13.80 4.52 39.22 2.24
2546 3277 2.671145 CTGCTCACAGTGGGGAGTA 58.329 57.895 13.80 9.42 39.22 2.59
2547 3278 3.476386 CTGCTCACAGTGGGGAGT 58.524 61.111 13.80 0.00 39.22 3.85
2556 3287 1.287191 GTCGCTCAGACTGCTCACA 59.713 57.895 0.00 0.00 46.13 3.58
2557 3288 4.161030 GTCGCTCAGACTGCTCAC 57.839 61.111 0.00 0.00 46.13 3.51
2565 3296 0.036732 AAGGCAAATGGTCGCTCAGA 59.963 50.000 0.00 0.00 0.00 3.27
2566 3297 0.449388 GAAGGCAAATGGTCGCTCAG 59.551 55.000 0.00 0.00 0.00 3.35
2567 3298 0.250684 TGAAGGCAAATGGTCGCTCA 60.251 50.000 0.00 0.00 0.00 4.26
2568 3299 0.169009 GTGAAGGCAAATGGTCGCTC 59.831 55.000 0.00 0.00 0.00 5.03
2569 3300 1.244019 GGTGAAGGCAAATGGTCGCT 61.244 55.000 0.00 0.00 0.00 4.93
2570 3301 1.212751 GGTGAAGGCAAATGGTCGC 59.787 57.895 0.00 0.00 0.00 5.19
2571 3302 1.501741 CGGTGAAGGCAAATGGTCG 59.498 57.895 0.00 0.00 0.00 4.79
2572 3303 1.883021 CCGGTGAAGGCAAATGGTC 59.117 57.895 0.00 0.00 0.00 4.02
2573 3304 4.095590 CCGGTGAAGGCAAATGGT 57.904 55.556 0.00 0.00 0.00 3.55
2589 3320 0.643820 CATCGAAACTAACGTCGGCC 59.356 55.000 0.00 0.00 37.84 6.13
2590 3321 0.643820 CCATCGAAACTAACGTCGGC 59.356 55.000 0.00 0.00 37.84 5.54
2595 3326 1.997606 GACCCACCATCGAAACTAACG 59.002 52.381 0.00 0.00 0.00 3.18
2605 3336 0.828022 TGGTATCACGACCCACCATC 59.172 55.000 0.00 0.00 38.89 3.51
2635 3366 0.165944 GAATCAACGGTCGCACCAAG 59.834 55.000 6.21 0.00 38.47 3.61
2637 3368 0.948623 CTGAATCAACGGTCGCACCA 60.949 55.000 6.21 0.00 38.47 4.17
2639 3370 1.359848 ATCTGAATCAACGGTCGCAC 58.640 50.000 0.00 0.00 0.00 5.34
2645 3376 3.660501 TCCCGATATCTGAATCAACGG 57.339 47.619 0.34 0.00 38.83 4.44
2646 3377 4.991056 ACATTCCCGATATCTGAATCAACG 59.009 41.667 12.08 6.45 0.00 4.10
2650 3381 6.226787 AGAACACATTCCCGATATCTGAATC 58.773 40.000 12.08 5.08 35.18 2.52
2651 3382 6.179906 AGAACACATTCCCGATATCTGAAT 57.820 37.500 10.10 10.10 35.18 2.57
2652 3383 5.614324 AGAACACATTCCCGATATCTGAA 57.386 39.130 0.34 4.27 35.18 3.02
2655 3386 5.745227 ACAAAGAACACATTCCCGATATCT 58.255 37.500 0.34 0.00 35.18 1.98
2657 3388 5.125417 CCAACAAAGAACACATTCCCGATAT 59.875 40.000 0.00 0.00 35.18 1.63
2659 3390 3.255642 CCAACAAAGAACACATTCCCGAT 59.744 43.478 0.00 0.00 35.18 4.18
2661 3392 2.360801 ACCAACAAAGAACACATTCCCG 59.639 45.455 0.00 0.00 35.18 5.14
2665 3396 7.308348 CGGATACTAACCAACAAAGAACACATT 60.308 37.037 0.00 0.00 0.00 2.71
2667 3398 5.467399 CGGATACTAACCAACAAAGAACACA 59.533 40.000 0.00 0.00 0.00 3.72
2675 3406 4.938832 CCAATGACGGATACTAACCAACAA 59.061 41.667 0.00 0.00 0.00 2.83
2683 3414 4.481368 AAACAGCCAATGACGGATACTA 57.519 40.909 0.00 0.00 0.00 1.82
2690 3421 3.252215 TCAAGGTAAAACAGCCAATGACG 59.748 43.478 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.