Multiple sequence alignment - TraesCS3A01G516000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G516000 chr3A 100.000 4038 0 0 1 4038 733882109 733878072 0.000000e+00 7457
1 TraesCS3A01G516000 chr3A 94.657 3163 130 12 1 3132 615139046 615135892 0.000000e+00 4868
2 TraesCS3A01G516000 chr3A 95.188 2930 119 8 1 2912 233469245 233466320 0.000000e+00 4610
3 TraesCS3A01G516000 chr2A 96.465 4045 114 13 1 4036 605784025 605788049 0.000000e+00 6650
4 TraesCS3A01G516000 chr2A 94.566 2963 110 8 1098 4038 340611171 340608238 0.000000e+00 4532
5 TraesCS3A01G516000 chr2A 91.887 604 28 10 3454 4038 538620864 538620263 0.000000e+00 824
6 TraesCS3A01G516000 chr2A 85.124 605 41 26 3471 4038 15510819 15510227 1.260000e-159 573
7 TraesCS3A01G516000 chr6A 96.192 3519 114 4 1 3517 136658846 136662346 0.000000e+00 5738
8 TraesCS3A01G516000 chr6A 95.802 2930 101 8 1 2912 11914530 11911605 0.000000e+00 4710
9 TraesCS3A01G516000 chr6A 94.963 536 15 2 3515 4038 136675188 136675723 0.000000e+00 830
10 TraesCS3A01G516000 chr6A 96.246 293 6 1 3746 4038 529365435 529365722 3.650000e-130 475
11 TraesCS3A01G516000 chr2B 94.271 3718 160 13 1 3694 539883828 539887516 0.000000e+00 5637
12 TraesCS3A01G516000 chr2B 91.887 3365 169 30 355 3693 738346960 738343674 0.000000e+00 4606
13 TraesCS3A01G516000 chr2B 89.762 3409 221 46 355 3694 149801182 149804531 0.000000e+00 4244
14 TraesCS3A01G516000 chr2B 91.960 796 44 9 3247 4038 750617348 750618127 0.000000e+00 1098
15 TraesCS3A01G516000 chr2B 85.213 798 58 27 3247 4038 103757531 103756788 0.000000e+00 765
16 TraesCS3A01G516000 chr2B 89.978 449 28 7 3247 3694 739862660 739862228 7.580000e-157 564
17 TraesCS3A01G516000 chr2B 89.362 376 24 5 3145 3519 123794300 123793940 3.680000e-125 459
18 TraesCS3A01G516000 chr2B 83.083 532 57 18 3152 3673 316250160 316249652 1.710000e-123 453
19 TraesCS3A01G516000 chr2B 88.342 386 29 2 3310 3694 780655095 780655465 2.210000e-122 449
20 TraesCS3A01G516000 chr2B 91.892 296 7 6 2918 3213 739862935 739862657 8.130000e-107 398
21 TraesCS3A01G516000 chr2B 91.189 227 3 7 2987 3213 67280993 67280784 3.950000e-75 292
22 TraesCS3A01G516000 chr2B 91.189 227 3 7 2987 3213 121619692 121619483 3.950000e-75 292
23 TraesCS3A01G516000 chr7A 93.982 3506 134 17 534 4021 734440992 734444438 0.000000e+00 5234
24 TraesCS3A01G516000 chr7A 93.353 346 10 4 3698 4038 493525431 493525768 2.170000e-137 499
25 TraesCS3A01G516000 chr5D 95.967 3149 107 7 1 3132 384514446 384511301 0.000000e+00 5094
26 TraesCS3A01G516000 chr5D 94.970 3161 127 15 1 3132 401777973 401781130 0.000000e+00 4927
27 TraesCS3A01G516000 chr2D 95.446 3162 113 8 1 3132 645238996 645235836 0.000000e+00 5012
28 TraesCS3A01G516000 chr5A 94.695 3148 113 16 534 3679 27045469 27042374 0.000000e+00 4839
29 TraesCS3A01G516000 chr5A 94.358 3013 120 12 418 3428 530200071 530197107 0.000000e+00 4577
30 TraesCS3A01G516000 chr5A 92.883 548 23 6 3148 3694 178859780 178859248 0.000000e+00 782
31 TraesCS3A01G516000 chr5A 93.645 299 14 3 3145 3439 384030403 384030700 3.700000e-120 442
32 TraesCS3A01G516000 chr7D 95.784 2846 114 6 1 2842 17939584 17936741 0.000000e+00 4586
33 TraesCS3A01G516000 chr3B 92.780 2313 114 14 1400 3694 753432208 753429931 0.000000e+00 3297
34 TraesCS3A01G516000 chr3B 89.664 803 49 10 3251 4038 29817209 29817992 0.000000e+00 992
35 TraesCS3A01G516000 chr6B 92.422 1412 64 15 2290 3694 152340196 152341571 0.000000e+00 1975
36 TraesCS3A01G516000 chr6B 91.421 1084 55 4 2627 3687 244348029 244346961 0.000000e+00 1452
37 TraesCS3A01G516000 chr6B 91.173 793 45 8 3247 4038 630177019 630176251 0.000000e+00 1053
38 TraesCS3A01G516000 chr4A 93.901 951 28 8 3099 4038 29673360 29672429 0.000000e+00 1408
39 TraesCS3A01G516000 chr4A 89.889 811 47 8 3247 4038 677749565 677748771 0.000000e+00 1011
40 TraesCS3A01G516000 chr7B 91.069 795 42 11 3247 4038 46780927 46781695 0.000000e+00 1048
41 TraesCS3A01G516000 chr7B 90.136 811 45 10 3247 4038 715337423 715336629 0.000000e+00 1022
42 TraesCS3A01G516000 chr7B 89.766 811 48 8 3247 4038 655320151 655319357 0.000000e+00 1005
43 TraesCS3A01G516000 chr4B 90.211 807 48 12 3247 4038 668342812 668342022 0.000000e+00 1024


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G516000 chr3A 733878072 733882109 4037 True 7457 7457 100.000 1 4038 1 chr3A.!!$R3 4037
1 TraesCS3A01G516000 chr3A 615135892 615139046 3154 True 4868 4868 94.657 1 3132 1 chr3A.!!$R2 3131
2 TraesCS3A01G516000 chr3A 233466320 233469245 2925 True 4610 4610 95.188 1 2912 1 chr3A.!!$R1 2911
3 TraesCS3A01G516000 chr2A 605784025 605788049 4024 False 6650 6650 96.465 1 4036 1 chr2A.!!$F1 4035
4 TraesCS3A01G516000 chr2A 340608238 340611171 2933 True 4532 4532 94.566 1098 4038 1 chr2A.!!$R2 2940
5 TraesCS3A01G516000 chr2A 538620263 538620864 601 True 824 824 91.887 3454 4038 1 chr2A.!!$R3 584
6 TraesCS3A01G516000 chr2A 15510227 15510819 592 True 573 573 85.124 3471 4038 1 chr2A.!!$R1 567
7 TraesCS3A01G516000 chr6A 136658846 136662346 3500 False 5738 5738 96.192 1 3517 1 chr6A.!!$F1 3516
8 TraesCS3A01G516000 chr6A 11911605 11914530 2925 True 4710 4710 95.802 1 2912 1 chr6A.!!$R1 2911
9 TraesCS3A01G516000 chr6A 136675188 136675723 535 False 830 830 94.963 3515 4038 1 chr6A.!!$F2 523
10 TraesCS3A01G516000 chr2B 539883828 539887516 3688 False 5637 5637 94.271 1 3694 1 chr2B.!!$F2 3693
11 TraesCS3A01G516000 chr2B 738343674 738346960 3286 True 4606 4606 91.887 355 3693 1 chr2B.!!$R6 3338
12 TraesCS3A01G516000 chr2B 149801182 149804531 3349 False 4244 4244 89.762 355 3694 1 chr2B.!!$F1 3339
13 TraesCS3A01G516000 chr2B 750617348 750618127 779 False 1098 1098 91.960 3247 4038 1 chr2B.!!$F3 791
14 TraesCS3A01G516000 chr2B 103756788 103757531 743 True 765 765 85.213 3247 4038 1 chr2B.!!$R2 791
15 TraesCS3A01G516000 chr2B 739862228 739862935 707 True 481 564 90.935 2918 3694 2 chr2B.!!$R7 776
16 TraesCS3A01G516000 chr2B 316249652 316250160 508 True 453 453 83.083 3152 3673 1 chr2B.!!$R5 521
17 TraesCS3A01G516000 chr7A 734440992 734444438 3446 False 5234 5234 93.982 534 4021 1 chr7A.!!$F2 3487
18 TraesCS3A01G516000 chr5D 384511301 384514446 3145 True 5094 5094 95.967 1 3132 1 chr5D.!!$R1 3131
19 TraesCS3A01G516000 chr5D 401777973 401781130 3157 False 4927 4927 94.970 1 3132 1 chr5D.!!$F1 3131
20 TraesCS3A01G516000 chr2D 645235836 645238996 3160 True 5012 5012 95.446 1 3132 1 chr2D.!!$R1 3131
21 TraesCS3A01G516000 chr5A 27042374 27045469 3095 True 4839 4839 94.695 534 3679 1 chr5A.!!$R1 3145
22 TraesCS3A01G516000 chr5A 530197107 530200071 2964 True 4577 4577 94.358 418 3428 1 chr5A.!!$R3 3010
23 TraesCS3A01G516000 chr5A 178859248 178859780 532 True 782 782 92.883 3148 3694 1 chr5A.!!$R2 546
24 TraesCS3A01G516000 chr7D 17936741 17939584 2843 True 4586 4586 95.784 1 2842 1 chr7D.!!$R1 2841
25 TraesCS3A01G516000 chr3B 753429931 753432208 2277 True 3297 3297 92.780 1400 3694 1 chr3B.!!$R1 2294
26 TraesCS3A01G516000 chr3B 29817209 29817992 783 False 992 992 89.664 3251 4038 1 chr3B.!!$F1 787
27 TraesCS3A01G516000 chr6B 152340196 152341571 1375 False 1975 1975 92.422 2290 3694 1 chr6B.!!$F1 1404
28 TraesCS3A01G516000 chr6B 244346961 244348029 1068 True 1452 1452 91.421 2627 3687 1 chr6B.!!$R1 1060
29 TraesCS3A01G516000 chr6B 630176251 630177019 768 True 1053 1053 91.173 3247 4038 1 chr6B.!!$R2 791
30 TraesCS3A01G516000 chr4A 29672429 29673360 931 True 1408 1408 93.901 3099 4038 1 chr4A.!!$R1 939
31 TraesCS3A01G516000 chr4A 677748771 677749565 794 True 1011 1011 89.889 3247 4038 1 chr4A.!!$R2 791
32 TraesCS3A01G516000 chr7B 46780927 46781695 768 False 1048 1048 91.069 3247 4038 1 chr7B.!!$F1 791
33 TraesCS3A01G516000 chr7B 715336629 715337423 794 True 1022 1022 90.136 3247 4038 1 chr7B.!!$R2 791
34 TraesCS3A01G516000 chr7B 655319357 655320151 794 True 1005 1005 89.766 3247 4038 1 chr7B.!!$R1 791
35 TraesCS3A01G516000 chr4B 668342022 668342812 790 True 1024 1024 90.211 3247 4038 1 chr4B.!!$R1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 117 2.026542 TGGCAGTGCTGATCTCTCATTT 60.027 45.455 16.11 0.0 0.00 2.32 F
748 752 4.225042 TGCTCCTTGTGGTTATACTGTCAT 59.775 41.667 0.00 0.0 34.23 3.06 F
1708 1730 0.825010 CTCAGCCCTGTTGCACCTTT 60.825 55.000 0.00 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 1578 1.105457 CATCACCCATTTGCACCGAT 58.895 50.000 0.00 0.0 0.00 4.18 R
2259 2295 1.153349 GCGGTCTTGATGGTCTCCC 60.153 63.158 0.00 0.0 0.00 4.30 R
3433 3678 0.036388 TGCCGGAGTTCCTAGCTTTG 60.036 55.000 5.05 0.0 34.99 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 117 2.026542 TGGCAGTGCTGATCTCTCATTT 60.027 45.455 16.11 0.00 0.00 2.32
199 201 9.367444 GTAGTTAATGTAGGTGTGATATATGCC 57.633 37.037 0.00 0.00 0.00 4.40
267 269 6.560003 TTAAGTCCATCTGCCATTTCTCTA 57.440 37.500 0.00 0.00 0.00 2.43
455 457 6.398234 TGTTTAGTGCAATTACATGGTTGT 57.602 33.333 0.00 0.00 39.98 3.32
748 752 4.225042 TGCTCCTTGTGGTTATACTGTCAT 59.775 41.667 0.00 0.00 34.23 3.06
946 950 8.986477 TCACCTAATAGTTACGTTTCCTTTAC 57.014 34.615 0.00 0.00 0.00 2.01
1067 1071 4.876107 AGCGTCGATGATTAGGAAAACAAT 59.124 37.500 9.31 0.00 0.00 2.71
1556 1578 1.216444 GCGCATGGACTCTGAGACA 59.784 57.895 12.44 10.20 0.00 3.41
1677 1699 2.745821 TGCATTGATGAAGCAGACACTC 59.254 45.455 0.00 0.00 33.75 3.51
1708 1730 0.825010 CTCAGCCCTGTTGCACCTTT 60.825 55.000 0.00 0.00 0.00 3.11
1723 1745 5.076182 TGCACCTTTTATTGACAGGAATGA 58.924 37.500 0.00 0.00 0.00 2.57
1858 1891 4.873259 TCGATTCCTGCATTTGTCGATTTA 59.127 37.500 9.42 0.00 33.73 1.40
2082 2115 3.503365 TCTTCCGGTTCTTCCTCACTTA 58.497 45.455 0.00 0.00 0.00 2.24
2118 2153 9.520515 AAGAAAAATGCTAGTCTATTGGAGAAA 57.479 29.630 0.00 0.00 35.37 2.52
2141 2177 4.584327 ACATTGGGAAAGTTGCTGTAAC 57.416 40.909 0.00 0.00 39.65 2.50
2208 2244 8.663025 CACCTATGCATGATCACTAATATTGTC 58.337 37.037 10.16 0.00 0.00 3.18
2259 2295 5.362556 AATTTTGAGATGAACACGGACTG 57.637 39.130 0.00 0.00 0.00 3.51
2348 2384 9.877178 AGATCAAGAAGAAGTATTTTGATACGT 57.123 29.630 0.00 0.00 38.28 3.57
2671 2714 9.284968 CCTTACCGTTTGATCCTCATTAAATAT 57.715 33.333 0.00 0.00 0.00 1.28
2979 3092 6.500684 TCAACAAAGATATCAGAACTTGCC 57.499 37.500 5.32 0.00 0.00 4.52
2985 3098 2.203800 TATCAGAACTTGCCGTAGCG 57.796 50.000 0.00 0.00 44.31 4.26
3234 3400 2.079925 TGCTTGGTTTGGTTTGCAAAC 58.920 42.857 30.09 30.09 40.64 2.93
3249 3415 6.803807 GGTTTGCAAACTGTGAAATAGATCTC 59.196 38.462 34.39 13.60 38.89 2.75
3342 3584 2.050144 AGGTGAAGAGCCAAAGTCTGA 58.950 47.619 0.00 0.00 0.00 3.27
3351 3593 4.276926 AGAGCCAAAGTCTGATGTTGAAAC 59.723 41.667 5.21 0.00 0.00 2.78
3428 3673 2.393646 GGCTCCAGTCATCTAGGAACT 58.606 52.381 0.00 0.00 46.37 3.01
3429 3674 2.364002 GGCTCCAGTCATCTAGGAACTC 59.636 54.545 0.00 0.00 41.75 3.01
3430 3675 2.364002 GCTCCAGTCATCTAGGAACTCC 59.636 54.545 0.00 0.00 41.75 3.85
3431 3676 2.621055 CTCCAGTCATCTAGGAACTCCG 59.379 54.545 0.00 0.00 41.75 4.63
3432 3677 1.683917 CCAGTCATCTAGGAACTCCGG 59.316 57.143 0.00 0.00 41.75 5.14
3433 3678 1.067821 CAGTCATCTAGGAACTCCGGC 59.932 57.143 0.00 0.00 41.75 6.13
3434 3679 1.112113 GTCATCTAGGAACTCCGGCA 58.888 55.000 0.00 0.00 41.75 5.69
3435 3680 1.480954 GTCATCTAGGAACTCCGGCAA 59.519 52.381 0.00 0.00 41.75 4.52
3436 3681 2.093658 GTCATCTAGGAACTCCGGCAAA 60.094 50.000 0.00 0.00 41.75 3.68
3437 3682 2.168521 TCATCTAGGAACTCCGGCAAAG 59.831 50.000 0.00 0.00 41.75 2.77
3438 3683 0.249398 TCTAGGAACTCCGGCAAAGC 59.751 55.000 0.00 0.00 41.75 3.51
3439 3684 0.250513 CTAGGAACTCCGGCAAAGCT 59.749 55.000 0.00 0.00 41.75 3.74
3440 3685 1.480954 CTAGGAACTCCGGCAAAGCTA 59.519 52.381 0.00 0.00 41.75 3.32
3441 3686 0.250513 AGGAACTCCGGCAAAGCTAG 59.749 55.000 0.00 0.00 42.08 3.42
3442 3687 0.744771 GGAACTCCGGCAAAGCTAGG 60.745 60.000 0.00 0.00 0.00 3.02
3572 3818 4.753516 TCAAGATGAAGGCGGAAGAATA 57.246 40.909 0.00 0.00 0.00 1.75
3854 4240 5.705441 TGTGAAGTTATGATCTTGTGAACCC 59.295 40.000 0.00 0.00 0.00 4.11
3866 4252 6.210287 TCTTGTGAACCCGTGTTTATTTTT 57.790 33.333 0.00 0.00 33.97 1.94
3867 4253 6.267070 TCTTGTGAACCCGTGTTTATTTTTC 58.733 36.000 0.00 0.00 33.97 2.29
3894 4281 4.592942 AGTTATGTGGATCACTTGTGCAT 58.407 39.130 0.00 0.00 35.11 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.034380 AAGCATGCAGGAGCTCACAT 60.034 50.000 21.98 12.77 40.90 3.21
115 117 3.791320 ACAACAGAGTCCCATAGGAAGA 58.209 45.455 0.00 0.00 46.38 2.87
199 201 5.045869 TGAATTAACTAGACCAACCCAGAGG 60.046 44.000 0.00 0.00 40.04 3.69
267 269 9.359653 AGCCATACAATCAATAGAATAAAGCTT 57.640 29.630 0.00 0.00 0.00 3.74
288 290 6.096282 ACAAAGTAACAAACTAACACAGCCAT 59.904 34.615 0.00 0.00 37.50 4.40
536 540 2.728007 TGAACCAACATCCACACACAA 58.272 42.857 0.00 0.00 0.00 3.33
946 950 2.015587 GAGAGGCTCTTCTTTGCATGG 58.984 52.381 19.80 0.00 0.00 3.66
1067 1071 5.364446 TCACTTCTACCTTCTTGTACACCAA 59.636 40.000 0.00 0.00 0.00 3.67
1502 1524 1.509463 GTCCGTCGCAGTCACCATA 59.491 57.895 0.00 0.00 0.00 2.74
1507 1529 2.212900 CTGATGGTCCGTCGCAGTCA 62.213 60.000 6.60 0.00 0.00 3.41
1556 1578 1.105457 CATCACCCATTTGCACCGAT 58.895 50.000 0.00 0.00 0.00 4.18
1672 1694 1.333177 GAGGTCTGTGTGGAGAGTGT 58.667 55.000 0.00 0.00 0.00 3.55
1677 1699 1.294780 GGCTGAGGTCTGTGTGGAG 59.705 63.158 0.00 0.00 0.00 3.86
1723 1745 5.708697 TGCTGTTCTTCTTCATTGATGACAT 59.291 36.000 1.95 0.00 36.36 3.06
2082 2115 9.454859 AGACTAGCATTTTTCTTGTATAGCTTT 57.545 29.630 0.00 0.00 32.70 3.51
2118 2153 5.185056 GGTTACAGCAACTTTCCCAATGTAT 59.815 40.000 0.00 0.00 37.30 2.29
2141 2177 8.268850 AGCACATTAACTATGAAACAAGTAGG 57.731 34.615 0.00 0.00 37.69 3.18
2208 2244 3.317993 CCAAGACAACAAACAAGGTAGGG 59.682 47.826 0.00 0.00 0.00 3.53
2259 2295 1.153349 GCGGTCTTGATGGTCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
2347 2383 3.119990 TGCTGACTTTATTTGCGGCTAAC 60.120 43.478 0.00 0.00 33.89 2.34
2348 2384 3.078097 TGCTGACTTTATTTGCGGCTAA 58.922 40.909 0.00 0.00 33.89 3.09
2979 3092 4.884257 AAAAATGCAACAAATCGCTACG 57.116 36.364 0.00 0.00 0.00 3.51
3234 3400 6.426328 GCATTAGTGGGAGATCTATTTCACAG 59.574 42.308 15.08 7.02 0.00 3.66
3249 3415 5.388654 AGGAAAATGATAGGCATTAGTGGG 58.611 41.667 0.00 0.00 46.25 4.61
3319 3561 2.155279 GACTTTGGCTCTTCACCTTCC 58.845 52.381 0.00 0.00 0.00 3.46
3342 3584 4.260784 GCACTTCTTCGACAGTTTCAACAT 60.261 41.667 0.00 0.00 0.00 2.71
3351 3593 2.728839 GTCTTGAGCACTTCTTCGACAG 59.271 50.000 0.00 0.00 0.00 3.51
3428 3673 0.249398 GAGTTCCTAGCTTTGCCGGA 59.751 55.000 5.05 0.00 0.00 5.14
3429 3674 0.744771 GGAGTTCCTAGCTTTGCCGG 60.745 60.000 0.00 0.00 0.00 6.13
3430 3675 1.084370 CGGAGTTCCTAGCTTTGCCG 61.084 60.000 0.00 0.00 0.00 5.69
3431 3676 0.744771 CCGGAGTTCCTAGCTTTGCC 60.745 60.000 0.00 0.00 0.00 4.52
3432 3677 1.369839 GCCGGAGTTCCTAGCTTTGC 61.370 60.000 5.05 0.00 32.29 3.68
3433 3678 0.036388 TGCCGGAGTTCCTAGCTTTG 60.036 55.000 5.05 0.00 34.99 2.77
3434 3679 0.690762 TTGCCGGAGTTCCTAGCTTT 59.309 50.000 5.05 0.00 34.99 3.51
3435 3680 0.690762 TTTGCCGGAGTTCCTAGCTT 59.309 50.000 5.05 0.00 34.99 3.74
3436 3681 0.250513 CTTTGCCGGAGTTCCTAGCT 59.749 55.000 5.05 0.00 34.99 3.32
3437 3682 1.369839 GCTTTGCCGGAGTTCCTAGC 61.370 60.000 5.05 0.00 34.64 3.42
3438 3683 0.036388 TGCTTTGCCGGAGTTCCTAG 60.036 55.000 5.05 0.00 0.00 3.02
3439 3684 0.398696 TTGCTTTGCCGGAGTTCCTA 59.601 50.000 5.05 0.00 0.00 2.94
3440 3685 1.150536 TTGCTTTGCCGGAGTTCCT 59.849 52.632 5.05 0.00 0.00 3.36
3441 3686 1.172812 AGTTGCTTTGCCGGAGTTCC 61.173 55.000 5.05 0.00 0.00 3.62
3442 3687 0.040067 CAGTTGCTTTGCCGGAGTTC 60.040 55.000 5.05 0.00 0.00 3.01
3527 3772 3.831333 TGCCACCAATTCTTCTTGCATTA 59.169 39.130 0.00 0.00 0.00 1.90
3528 3773 2.633967 TGCCACCAATTCTTCTTGCATT 59.366 40.909 0.00 0.00 0.00 3.56
3572 3818 1.904852 CTTGTCGCGTGCAGCTTCAT 61.905 55.000 5.77 0.00 45.59 2.57
3854 4240 8.406716 CACATAACTTCACGAAAAATAAACACG 58.593 33.333 0.00 0.00 0.00 4.49
3866 4252 4.801330 AGTGATCCACATAACTTCACGA 57.199 40.909 0.00 0.00 41.15 4.35
3867 4253 4.690748 ACAAGTGATCCACATAACTTCACG 59.309 41.667 0.00 0.00 41.15 4.35
3894 4281 0.106268 TTCAAACAGCAAGGCCCAGA 60.106 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.