Multiple sequence alignment - TraesCS3A01G514600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G514600 chr3A 100.000 3494 0 0 1 3494 733332371 733335864 0.000000e+00 6453.0
1 TraesCS3A01G514600 chr3A 91.146 3230 217 35 1 3215 733464618 733467793 0.000000e+00 4316.0
2 TraesCS3A01G514600 chr3A 87.385 2608 249 34 627 3215 733436121 733438667 0.000000e+00 2920.0
3 TraesCS3A01G514600 chr3A 89.443 2084 168 16 627 2703 733411326 733413364 0.000000e+00 2582.0
4 TraesCS3A01G514600 chr3A 90.702 1667 115 14 1234 2882 733185892 733187536 0.000000e+00 2183.0
5 TraesCS3A01G514600 chr3A 85.762 2093 235 29 718 2786 733039218 733041271 0.000000e+00 2156.0
6 TraesCS3A01G514600 chr3A 83.460 1844 264 28 686 2508 733860380 733858557 0.000000e+00 1677.0
7 TraesCS3A01G514600 chr3A 92.254 284 22 0 1 284 733464046 733464329 1.510000e-108 403.0
8 TraesCS3A01G514600 chr3D 91.089 2884 179 28 1 2876 603942804 603945617 0.000000e+00 3831.0
9 TraesCS3A01G514600 chr3D 90.557 1938 162 10 627 2559 602781749 602779828 0.000000e+00 2545.0
10 TraesCS3A01G514600 chr3D 85.864 2094 239 27 718 2789 602803981 602801923 0.000000e+00 2174.0
11 TraesCS3A01G514600 chr3D 92.254 284 22 0 1 284 603942126 603942409 1.510000e-108 403.0
12 TraesCS3A01G514600 chr3D 82.738 336 35 5 2884 3215 602779618 602779302 9.550000e-71 278.0
13 TraesCS3A01G514600 chr3D 83.060 183 20 4 2700 2882 602779821 602779650 4.670000e-34 156.0
14 TraesCS3A01G514600 chr3D 82.353 187 11 4 3029 3215 603945769 603945933 3.640000e-30 143.0
15 TraesCS3A01G514600 chr3B 96.016 2058 67 4 592 2636 810977717 810979772 0.000000e+00 3332.0
16 TraesCS3A01G514600 chr3B 87.980 2629 214 37 627 3215 810970220 810972786 0.000000e+00 3011.0
17 TraesCS3A01G514600 chr3B 89.174 1949 153 21 932 2876 811040914 811042808 0.000000e+00 2377.0
18 TraesCS3A01G514600 chr3B 95.829 911 27 10 1 906 811040014 811040918 0.000000e+00 1461.0
19 TraesCS3A01G514600 chr3B 88.036 560 41 13 2 554 810977177 810977717 1.060000e-179 640.0
20 TraesCS3A01G514600 chr3B 82.705 451 45 11 1 445 810976592 810977015 1.530000e-98 370.0
21 TraesCS3A01G514600 chr3B 91.016 256 22 1 29 284 811039364 811039618 9.290000e-91 344.0
22 TraesCS3A01G514600 chr3B 82.888 187 10 4 3029 3215 811042960 811043124 7.810000e-32 148.0
23 TraesCS3A01G514600 chr7D 90.164 61 4 2 523 582 79518086 79518027 1.040000e-10 78.7
24 TraesCS3A01G514600 chr7D 88.333 60 5 2 523 581 79210468 79210410 1.740000e-08 71.3
25 TraesCS3A01G514600 chr7D 88.333 60 5 2 523 581 79267581 79267523 1.740000e-08 71.3
26 TraesCS3A01G514600 chr7D 88.333 60 5 2 523 581 79301753 79301695 1.740000e-08 71.3
27 TraesCS3A01G514600 chr5A 100.000 39 0 0 540 578 552234059 552234021 4.840000e-09 73.1
28 TraesCS3A01G514600 chr7A 88.333 60 5 2 523 581 82168563 82168505 1.740000e-08 71.3
29 TraesCS3A01G514600 chr4D 90.196 51 1 3 457 504 298282766 298282815 2.910000e-06 63.9
30 TraesCS3A01G514600 chr2D 100.000 34 0 0 470 503 353340707 353340740 2.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G514600 chr3A 733332371 733335864 3493 False 6453.00 6453 100.000000 1 3494 1 chr3A.!!$F3 3493
1 TraesCS3A01G514600 chr3A 733436121 733438667 2546 False 2920.00 2920 87.385000 627 3215 1 chr3A.!!$F5 2588
2 TraesCS3A01G514600 chr3A 733411326 733413364 2038 False 2582.00 2582 89.443000 627 2703 1 chr3A.!!$F4 2076
3 TraesCS3A01G514600 chr3A 733464046 733467793 3747 False 2359.50 4316 91.700000 1 3215 2 chr3A.!!$F6 3214
4 TraesCS3A01G514600 chr3A 733185892 733187536 1644 False 2183.00 2183 90.702000 1234 2882 1 chr3A.!!$F2 1648
5 TraesCS3A01G514600 chr3A 733039218 733041271 2053 False 2156.00 2156 85.762000 718 2786 1 chr3A.!!$F1 2068
6 TraesCS3A01G514600 chr3A 733858557 733860380 1823 True 1677.00 1677 83.460000 686 2508 1 chr3A.!!$R1 1822
7 TraesCS3A01G514600 chr3D 602801923 602803981 2058 True 2174.00 2174 85.864000 718 2789 1 chr3D.!!$R1 2071
8 TraesCS3A01G514600 chr3D 603942126 603945933 3807 False 1459.00 3831 88.565333 1 3215 3 chr3D.!!$F1 3214
9 TraesCS3A01G514600 chr3D 602779302 602781749 2447 True 993.00 2545 85.451667 627 3215 3 chr3D.!!$R2 2588
10 TraesCS3A01G514600 chr3B 810970220 810979772 9552 False 1838.25 3332 88.684250 1 3215 4 chr3B.!!$F1 3214
11 TraesCS3A01G514600 chr3B 811039364 811043124 3760 False 1082.50 2377 89.726750 1 3215 4 chr3B.!!$F2 3214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 7306 3.255969 TGGAAACATAGTCCGGCTTAC 57.744 47.619 0.0 0.0 38.06 2.34 F
386 7419 4.101448 AGTCCGTGGGCAGGCATC 62.101 66.667 0.0 0.0 0.00 3.91 F
1482 8570 2.416836 CCTGCAAAACTGCATCATCAGG 60.417 50.000 0.0 0.0 44.47 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 8570 1.000646 TTGGAATACCCGGGGCAAC 60.001 57.895 27.92 13.3 37.93 4.17 R
2243 9380 2.283298 GAATGCTCGCCTGATCTTGAA 58.717 47.619 0.00 0.0 0.00 2.69 R
3261 10468 0.252012 CGCCTCCTCATCCTAGGGAT 60.252 60.000 9.46 0.0 44.21 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
274 7306 3.255969 TGGAAACATAGTCCGGCTTAC 57.744 47.619 0.00 0.00 38.06 2.34
386 7419 4.101448 AGTCCGTGGGCAGGCATC 62.101 66.667 0.00 0.00 0.00 3.91
714 7773 4.379339 TCAACAAAAGAAACCCCTTTCG 57.621 40.909 0.00 0.00 40.79 3.46
769 7828 9.613428 TCAAGATCACAAATTAGGGTATTGTAG 57.387 33.333 0.00 0.00 35.63 2.74
820 7879 4.651778 AGCTTACCAATGCAGTAGTCAAA 58.348 39.130 0.00 0.00 0.00 2.69
1279 8367 4.402829 AGTCGATATGGTGCTATCACTCT 58.597 43.478 0.00 0.00 42.72 3.24
1482 8570 2.416836 CCTGCAAAACTGCATCATCAGG 60.417 50.000 0.00 0.00 44.47 3.86
1605 8693 6.551736 CCCCGTACTGAATTATTTGAAACTG 58.448 40.000 0.00 0.00 0.00 3.16
1681 8772 7.340256 ACATATTTATGTTGTCGGGGACTTTA 58.660 34.615 0.00 0.00 43.99 1.85
1770 8861 5.305902 AGCATATCATTTGGATCCAATTGCA 59.694 36.000 31.41 24.43 37.28 4.08
1912 9011 5.241403 TCTTTTGGCTCCTGACTAATCAA 57.759 39.130 0.00 0.00 33.30 2.57
2243 9380 1.842562 CTCATGGGTTCAGGATCAGGT 59.157 52.381 0.00 0.00 32.96 4.00
2460 9614 1.689273 CTATTAGCTCTGCCGAGGGTT 59.311 52.381 7.30 0.00 37.75 4.11
2534 9688 2.113233 TCTAGAGAGCATCCCCCATCAT 59.887 50.000 0.00 0.00 33.66 2.45
2631 9788 2.988493 GTGTGCATTGACGCAAATCATT 59.012 40.909 0.00 0.00 45.14 2.57
2650 9807 5.716979 TCATTAGGCAGAGGGAGTACTTAT 58.283 41.667 0.00 0.00 0.00 1.73
2662 9822 7.785506 AGAGGGAGTACTTATTGTGCTATTAGT 59.214 37.037 0.00 0.00 41.66 2.24
2678 9838 8.827677 GTGCTATTAGTAAGTGTTATCCTTTGG 58.172 37.037 0.00 0.00 0.00 3.28
2680 9840 9.043079 GCTATTAGTAAGTGTTATCCTTTGGTC 57.957 37.037 0.00 0.00 0.00 4.02
2684 9844 4.373156 AAGTGTTATCCTTTGGTCAGCT 57.627 40.909 0.00 0.00 0.00 4.24
2728 9890 0.031585 TCCTCAACCGTGTCAGTTCG 59.968 55.000 0.00 0.00 0.00 3.95
2763 9925 1.885388 CCTGTTGTTCCGCGTGTCA 60.885 57.895 4.92 0.00 0.00 3.58
2855 10027 8.868522 ATAAGAATGAAGGTGTGAATCAAAGA 57.131 30.769 0.00 0.00 0.00 2.52
2871 10043 6.808008 ATCAAAGACATGAAACTGTACCTG 57.192 37.500 0.00 0.00 32.06 4.00
2898 10100 3.001533 GTGTGTTTGGAAAGCAAAGCATG 59.998 43.478 0.00 0.00 39.26 4.06
2917 10119 4.274459 GCATGTATCAGATTGGTTCCAGAC 59.726 45.833 0.00 0.00 0.00 3.51
2944 10146 3.627577 ACGAGTGTTCAATGTTTCTTGCT 59.372 39.130 0.00 0.00 0.00 3.91
3042 10247 7.094805 TGTGCTTCAGTATTATTCACTGGTTTC 60.095 37.037 2.90 0.00 42.98 2.78
3052 10257 7.921786 TTATTCACTGGTTTCTCAGGTATTG 57.078 36.000 0.00 0.00 38.98 1.90
3086 10291 3.686016 TCTTGGAAAGCCTGGATTACAC 58.314 45.455 0.00 0.00 45.70 2.90
3135 10342 4.887071 TGGAACACAGATATGGCCATTTAC 59.113 41.667 26.37 11.53 0.00 2.01
3136 10343 5.133221 GGAACACAGATATGGCCATTTACT 58.867 41.667 26.37 17.27 0.00 2.24
3137 10344 5.594317 GGAACACAGATATGGCCATTTACTT 59.406 40.000 26.37 0.29 0.00 2.24
3138 10345 6.455360 AACACAGATATGGCCATTTACTTG 57.545 37.500 26.37 17.71 0.00 3.16
3177 10384 5.961395 AACGTAATACAAATAGGAGCACG 57.039 39.130 0.00 0.00 0.00 5.34
3178 10385 4.365723 ACGTAATACAAATAGGAGCACGG 58.634 43.478 0.00 0.00 0.00 4.94
3179 10386 3.739300 CGTAATACAAATAGGAGCACGGG 59.261 47.826 0.00 0.00 0.00 5.28
3187 10394 0.970937 TAGGAGCACGGGTGAAGGAG 60.971 60.000 2.38 0.00 0.00 3.69
3215 10422 1.205893 GTTTCACTCGAGGCTCCAGAT 59.794 52.381 16.33 0.00 0.00 2.90
3216 10423 0.820226 TTCACTCGAGGCTCCAGATG 59.180 55.000 16.33 10.10 0.00 2.90
3217 10424 1.227205 CACTCGAGGCTCCAGATGC 60.227 63.158 16.33 0.00 0.00 3.91
3218 10425 1.381056 ACTCGAGGCTCCAGATGCT 60.381 57.895 16.33 0.00 0.00 3.79
3219 10426 0.975040 ACTCGAGGCTCCAGATGCTT 60.975 55.000 16.33 0.00 0.00 3.91
3220 10427 0.530211 CTCGAGGCTCCAGATGCTTG 60.530 60.000 9.32 0.00 0.00 4.01
3221 10428 1.220206 CGAGGCTCCAGATGCTTGT 59.780 57.895 9.32 0.00 0.00 3.16
3222 10429 1.088340 CGAGGCTCCAGATGCTTGTG 61.088 60.000 9.32 0.00 0.00 3.33
3223 10430 0.035630 GAGGCTCCAGATGCTTGTGT 60.036 55.000 2.15 0.00 0.00 3.72
3224 10431 0.403271 AGGCTCCAGATGCTTGTGTT 59.597 50.000 0.00 0.00 0.00 3.32
3225 10432 1.630369 AGGCTCCAGATGCTTGTGTTA 59.370 47.619 0.00 0.00 0.00 2.41
3226 10433 2.240667 AGGCTCCAGATGCTTGTGTTAT 59.759 45.455 0.00 0.00 0.00 1.89
3227 10434 2.357009 GGCTCCAGATGCTTGTGTTATG 59.643 50.000 0.00 0.00 0.00 1.90
3228 10435 3.273434 GCTCCAGATGCTTGTGTTATGA 58.727 45.455 0.00 0.00 0.00 2.15
3229 10436 3.691118 GCTCCAGATGCTTGTGTTATGAA 59.309 43.478 0.00 0.00 0.00 2.57
3230 10437 4.201891 GCTCCAGATGCTTGTGTTATGAAG 60.202 45.833 0.00 0.00 0.00 3.02
3231 10438 5.164620 TCCAGATGCTTGTGTTATGAAGA 57.835 39.130 0.00 0.00 0.00 2.87
3232 10439 5.559770 TCCAGATGCTTGTGTTATGAAGAA 58.440 37.500 0.00 0.00 0.00 2.52
3233 10440 6.003326 TCCAGATGCTTGTGTTATGAAGAAA 58.997 36.000 0.00 0.00 0.00 2.52
3234 10441 6.489700 TCCAGATGCTTGTGTTATGAAGAAAA 59.510 34.615 0.00 0.00 0.00 2.29
3235 10442 7.014134 TCCAGATGCTTGTGTTATGAAGAAAAA 59.986 33.333 0.00 0.00 0.00 1.94
3264 10471 7.977789 AAAACCATATCCAAACAAACAATCC 57.022 32.000 0.00 0.00 0.00 3.01
3265 10472 5.675684 ACCATATCCAAACAAACAATCCC 57.324 39.130 0.00 0.00 0.00 3.85
3266 10473 5.341169 ACCATATCCAAACAAACAATCCCT 58.659 37.500 0.00 0.00 0.00 4.20
3267 10474 6.498538 ACCATATCCAAACAAACAATCCCTA 58.501 36.000 0.00 0.00 0.00 3.53
3268 10475 6.607198 ACCATATCCAAACAAACAATCCCTAG 59.393 38.462 0.00 0.00 0.00 3.02
3269 10476 6.040842 CCATATCCAAACAAACAATCCCTAGG 59.959 42.308 0.06 0.06 0.00 3.02
3270 10477 4.733077 TCCAAACAAACAATCCCTAGGA 57.267 40.909 11.48 0.00 35.55 2.94
3271 10478 5.269554 TCCAAACAAACAATCCCTAGGAT 57.730 39.130 11.48 0.00 45.46 3.24
3272 10479 5.016173 TCCAAACAAACAATCCCTAGGATG 58.984 41.667 11.48 8.94 42.27 3.51
3273 10480 5.016173 CCAAACAAACAATCCCTAGGATGA 58.984 41.667 11.48 0.00 42.27 2.92
3274 10481 5.126061 CCAAACAAACAATCCCTAGGATGAG 59.874 44.000 11.48 0.00 42.27 2.90
3275 10482 4.510167 ACAAACAATCCCTAGGATGAGG 57.490 45.455 11.48 0.00 42.27 3.86
3276 10483 4.111577 ACAAACAATCCCTAGGATGAGGA 58.888 43.478 11.48 0.00 42.27 3.71
3277 10484 4.164988 ACAAACAATCCCTAGGATGAGGAG 59.835 45.833 11.48 0.00 42.27 3.69
3278 10485 2.983296 ACAATCCCTAGGATGAGGAGG 58.017 52.381 11.48 0.00 42.27 4.30
3279 10486 1.627834 CAATCCCTAGGATGAGGAGGC 59.372 57.143 11.48 0.00 42.27 4.70
3280 10487 0.252012 ATCCCTAGGATGAGGAGGCG 60.252 60.000 11.48 0.00 41.43 5.52
3281 10488 1.910772 CCCTAGGATGAGGAGGCGG 60.911 68.421 11.48 0.00 39.15 6.13
3282 10489 2.578714 CCTAGGATGAGGAGGCGGC 61.579 68.421 1.05 0.00 39.15 6.53
3283 10490 2.524394 TAGGATGAGGAGGCGGCC 60.524 66.667 12.11 12.11 0.00 6.13
3300 10507 3.787001 CGGAGAGGCTTGGGGGTC 61.787 72.222 0.00 0.00 0.00 4.46
3301 10508 3.412408 GGAGAGGCTTGGGGGTCC 61.412 72.222 0.00 0.00 0.00 4.46
3302 10509 2.610859 GAGAGGCTTGGGGGTCCA 60.611 66.667 0.00 0.00 42.25 4.02
3303 10510 2.003548 GAGAGGCTTGGGGGTCCAT 61.004 63.158 0.00 0.00 43.63 3.41
3304 10511 1.544917 AGAGGCTTGGGGGTCCATT 60.545 57.895 0.00 0.00 43.63 3.16
3305 10512 1.149133 AGAGGCTTGGGGGTCCATTT 61.149 55.000 0.00 0.00 43.63 2.32
3306 10513 0.252239 GAGGCTTGGGGGTCCATTTT 60.252 55.000 0.00 0.00 43.63 1.82
3307 10514 0.545071 AGGCTTGGGGGTCCATTTTG 60.545 55.000 0.00 0.00 43.63 2.44
3308 10515 1.296392 GCTTGGGGGTCCATTTTGC 59.704 57.895 0.00 0.00 43.63 3.68
3309 10516 1.982430 CTTGGGGGTCCATTTTGCC 59.018 57.895 0.00 0.00 43.63 4.52
3310 10517 0.545071 CTTGGGGGTCCATTTTGCCT 60.545 55.000 0.00 0.00 43.63 4.75
3311 10518 0.835543 TTGGGGGTCCATTTTGCCTG 60.836 55.000 0.00 0.00 43.63 4.85
3312 10519 1.229177 GGGGGTCCATTTTGCCTGT 60.229 57.895 0.00 0.00 0.00 4.00
3313 10520 0.835971 GGGGGTCCATTTTGCCTGTT 60.836 55.000 0.00 0.00 0.00 3.16
3314 10521 1.055849 GGGGTCCATTTTGCCTGTTT 58.944 50.000 0.00 0.00 0.00 2.83
3315 10522 2.252714 GGGGTCCATTTTGCCTGTTTA 58.747 47.619 0.00 0.00 0.00 2.01
3316 10523 2.837591 GGGGTCCATTTTGCCTGTTTAT 59.162 45.455 0.00 0.00 0.00 1.40
3317 10524 3.263170 GGGGTCCATTTTGCCTGTTTATT 59.737 43.478 0.00 0.00 0.00 1.40
3318 10525 4.252878 GGGTCCATTTTGCCTGTTTATTG 58.747 43.478 0.00 0.00 0.00 1.90
3319 10526 4.020662 GGGTCCATTTTGCCTGTTTATTGA 60.021 41.667 0.00 0.00 0.00 2.57
3320 10527 5.512232 GGGTCCATTTTGCCTGTTTATTGAA 60.512 40.000 0.00 0.00 0.00 2.69
3321 10528 5.408299 GGTCCATTTTGCCTGTTTATTGAAC 59.592 40.000 0.00 0.00 38.78 3.18
3322 10529 5.118510 GTCCATTTTGCCTGTTTATTGAACG 59.881 40.000 0.00 0.00 41.29 3.95
3323 10530 4.388469 CCATTTTGCCTGTTTATTGAACGG 59.612 41.667 0.00 0.00 43.05 4.44
3324 10531 4.920640 TTTTGCCTGTTTATTGAACGGA 57.079 36.364 1.89 0.00 45.70 4.69
3325 10532 3.907894 TTGCCTGTTTATTGAACGGAC 57.092 42.857 1.89 0.00 45.70 4.79
3326 10533 1.801771 TGCCTGTTTATTGAACGGACG 59.198 47.619 1.89 0.00 45.70 4.79
3327 10534 1.465187 GCCTGTTTATTGAACGGACGC 60.465 52.381 1.89 0.00 45.70 5.19
3328 10535 1.801771 CCTGTTTATTGAACGGACGCA 59.198 47.619 1.89 0.00 45.70 5.24
3329 10536 2.159707 CCTGTTTATTGAACGGACGCAG 60.160 50.000 1.89 0.00 45.70 5.18
3330 10537 1.195900 TGTTTATTGAACGGACGCAGC 59.804 47.619 0.00 0.00 41.29 5.25
3331 10538 0.440758 TTTATTGAACGGACGCAGCG 59.559 50.000 14.82 14.82 0.00 5.18
3332 10539 0.668096 TTATTGAACGGACGCAGCGT 60.668 50.000 23.23 23.23 45.10 5.07
3342 10549 3.920144 ACGCAGCGTCAGTACTATC 57.080 52.632 16.61 0.00 33.69 2.08
3343 10550 1.380524 ACGCAGCGTCAGTACTATCT 58.619 50.000 16.61 0.00 33.69 1.98
3344 10551 1.743958 ACGCAGCGTCAGTACTATCTT 59.256 47.619 16.61 0.00 33.69 2.40
3345 10552 2.223294 ACGCAGCGTCAGTACTATCTTC 60.223 50.000 16.61 0.00 33.69 2.87
3346 10553 2.032302 CGCAGCGTCAGTACTATCTTCT 59.968 50.000 6.65 0.00 0.00 2.85
3347 10554 3.623863 GCAGCGTCAGTACTATCTTCTC 58.376 50.000 0.00 0.00 0.00 2.87
3348 10555 3.846744 GCAGCGTCAGTACTATCTTCTCG 60.847 52.174 0.00 0.00 0.00 4.04
3349 10556 2.288458 AGCGTCAGTACTATCTTCTCGC 59.712 50.000 0.00 4.91 41.11 5.03
3350 10557 2.288458 GCGTCAGTACTATCTTCTCGCT 59.712 50.000 0.00 0.00 38.46 4.93
3351 10558 3.605231 GCGTCAGTACTATCTTCTCGCTC 60.605 52.174 0.00 0.00 38.46 5.03
3352 10559 3.556365 CGTCAGTACTATCTTCTCGCTCA 59.444 47.826 0.00 0.00 0.00 4.26
3353 10560 4.212425 CGTCAGTACTATCTTCTCGCTCAT 59.788 45.833 0.00 0.00 0.00 2.90
3354 10561 5.448438 GTCAGTACTATCTTCTCGCTCATG 58.552 45.833 0.00 0.00 0.00 3.07
3355 10562 5.237561 GTCAGTACTATCTTCTCGCTCATGA 59.762 44.000 0.00 0.00 0.00 3.07
3356 10563 6.000840 TCAGTACTATCTTCTCGCTCATGAT 58.999 40.000 0.00 0.00 0.00 2.45
3357 10564 6.488344 TCAGTACTATCTTCTCGCTCATGATT 59.512 38.462 0.00 0.00 0.00 2.57
3358 10565 6.801377 CAGTACTATCTTCTCGCTCATGATTC 59.199 42.308 0.00 0.00 0.00 2.52
3359 10566 5.781210 ACTATCTTCTCGCTCATGATTCA 57.219 39.130 0.00 0.00 0.00 2.57
3360 10567 6.154203 ACTATCTTCTCGCTCATGATTCAA 57.846 37.500 0.00 0.00 0.00 2.69
3361 10568 6.215121 ACTATCTTCTCGCTCATGATTCAAG 58.785 40.000 0.00 0.00 0.00 3.02
3362 10569 3.790091 TCTTCTCGCTCATGATTCAAGG 58.210 45.455 0.00 0.00 0.00 3.61
3363 10570 3.448660 TCTTCTCGCTCATGATTCAAGGA 59.551 43.478 0.00 0.00 0.00 3.36
3364 10571 3.170791 TCTCGCTCATGATTCAAGGAC 57.829 47.619 0.00 0.00 0.00 3.85
3365 10572 2.497273 TCTCGCTCATGATTCAAGGACA 59.503 45.455 0.00 0.00 0.00 4.02
3366 10573 2.864946 CTCGCTCATGATTCAAGGACAG 59.135 50.000 0.00 0.00 0.00 3.51
3367 10574 1.329906 CGCTCATGATTCAAGGACAGC 59.670 52.381 0.00 0.00 0.00 4.40
3368 10575 2.641305 GCTCATGATTCAAGGACAGCT 58.359 47.619 0.00 0.00 0.00 4.24
3369 10576 2.355132 GCTCATGATTCAAGGACAGCTG 59.645 50.000 13.48 13.48 0.00 4.24
3370 10577 2.943690 CTCATGATTCAAGGACAGCTGG 59.056 50.000 19.93 0.00 0.00 4.85
3371 10578 2.306805 TCATGATTCAAGGACAGCTGGT 59.693 45.455 19.93 3.31 0.00 4.00
3372 10579 2.479566 TGATTCAAGGACAGCTGGTC 57.520 50.000 19.93 12.72 46.20 4.02
3379 10586 4.625800 GACAGCTGGTCCACATCC 57.374 61.111 19.93 0.00 40.83 3.51
3380 10587 1.448540 GACAGCTGGTCCACATCCG 60.449 63.158 19.93 0.00 40.83 4.18
3381 10588 2.124983 CAGCTGGTCCACATCCGG 60.125 66.667 5.57 0.00 34.70 5.14
3400 10607 3.712881 GCCACACGAACACGAGCC 61.713 66.667 0.00 0.00 0.00 4.70
3401 10608 3.403057 CCACACGAACACGAGCCG 61.403 66.667 0.00 0.00 0.00 5.52
3402 10609 2.354188 CACACGAACACGAGCCGA 60.354 61.111 1.50 0.00 0.00 5.54
3403 10610 2.354305 ACACGAACACGAGCCGAC 60.354 61.111 1.50 0.00 0.00 4.79
3404 10611 3.458579 CACGAACACGAGCCGACG 61.459 66.667 1.50 0.00 39.31 5.12
3405 10612 4.695231 ACGAACACGAGCCGACGG 62.695 66.667 10.29 10.29 37.61 4.79
3416 10623 3.437795 CCGACGGGCGTCAGTACT 61.438 66.667 5.81 0.00 44.77 2.73
3417 10624 2.108514 CCGACGGGCGTCAGTACTA 61.109 63.158 5.81 0.00 44.77 1.82
3418 10625 1.442526 CCGACGGGCGTCAGTACTAT 61.443 60.000 5.81 0.00 44.77 2.12
3419 10626 0.041488 CGACGGGCGTCAGTACTATC 60.041 60.000 0.00 0.00 44.77 2.08
3420 10627 1.307097 GACGGGCGTCAGTACTATCT 58.693 55.000 0.00 0.00 44.02 1.98
3421 10628 1.002684 GACGGGCGTCAGTACTATCTG 60.003 57.143 0.00 0.00 44.02 2.90
3422 10629 1.022735 CGGGCGTCAGTACTATCTGT 58.977 55.000 0.00 0.00 36.85 3.41
3423 10630 1.002684 CGGGCGTCAGTACTATCTGTC 60.003 57.143 0.00 0.00 36.85 3.51
3424 10631 2.299521 GGGCGTCAGTACTATCTGTCT 58.700 52.381 0.00 0.00 36.85 3.41
3425 10632 2.291190 GGGCGTCAGTACTATCTGTCTC 59.709 54.545 0.00 0.00 36.85 3.36
3426 10633 3.207778 GGCGTCAGTACTATCTGTCTCT 58.792 50.000 0.00 0.00 36.85 3.10
3427 10634 3.249080 GGCGTCAGTACTATCTGTCTCTC 59.751 52.174 0.00 0.00 36.85 3.20
3428 10635 3.249080 GCGTCAGTACTATCTGTCTCTCC 59.751 52.174 0.00 0.00 36.85 3.71
3429 10636 3.491639 CGTCAGTACTATCTGTCTCTCCG 59.508 52.174 0.00 0.00 36.85 4.63
3430 10637 3.810941 GTCAGTACTATCTGTCTCTCCGG 59.189 52.174 0.00 0.00 36.85 5.14
3431 10638 2.550606 CAGTACTATCTGTCTCTCCGGC 59.449 54.545 0.00 0.00 0.00 6.13
3432 10639 1.881324 GTACTATCTGTCTCTCCGGCC 59.119 57.143 0.00 0.00 0.00 6.13
3433 10640 0.820074 ACTATCTGTCTCTCCGGCCG 60.820 60.000 21.04 21.04 0.00 6.13
3434 10641 2.136196 CTATCTGTCTCTCCGGCCGC 62.136 65.000 22.85 5.24 0.00 6.53
3446 10653 4.115199 GGCCGCCACCTCTCCATT 62.115 66.667 3.91 0.00 0.00 3.16
3447 10654 2.825836 GCCGCCACCTCTCCATTG 60.826 66.667 0.00 0.00 0.00 2.82
3448 10655 2.671070 CCGCCACCTCTCCATTGT 59.329 61.111 0.00 0.00 0.00 2.71
3449 10656 1.450312 CCGCCACCTCTCCATTGTC 60.450 63.158 0.00 0.00 0.00 3.18
3450 10657 1.811266 CGCCACCTCTCCATTGTCG 60.811 63.158 0.00 0.00 0.00 4.35
3451 10658 1.450312 GCCACCTCTCCATTGTCGG 60.450 63.158 0.00 0.00 0.00 4.79
3452 10659 1.450312 CCACCTCTCCATTGTCGGC 60.450 63.158 0.00 0.00 0.00 5.54
3453 10660 1.450312 CACCTCTCCATTGTCGGCC 60.450 63.158 0.00 0.00 0.00 6.13
3454 10661 1.918293 ACCTCTCCATTGTCGGCCA 60.918 57.895 2.24 0.00 0.00 5.36
3455 10662 1.153289 CCTCTCCATTGTCGGCCAG 60.153 63.158 2.24 0.00 0.00 4.85
3456 10663 1.153289 CTCTCCATTGTCGGCCAGG 60.153 63.158 2.24 0.00 0.00 4.45
3457 10664 2.825836 CTCCATTGTCGGCCAGGC 60.826 66.667 1.26 1.26 0.00 4.85
3458 10665 4.776322 TCCATTGTCGGCCAGGCG 62.776 66.667 5.00 7.36 0.00 5.52
3460 10667 3.055719 CATTGTCGGCCAGGCGTT 61.056 61.111 13.55 0.00 0.00 4.84
3461 10668 2.746277 ATTGTCGGCCAGGCGTTC 60.746 61.111 13.55 8.68 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 5087 5.242838 TGTTTCCGGAATCAATTAGCAAAGT 59.757 36.000 22.68 0.00 0.00 2.66
206 7238 2.677524 GCTTGCATGGCCTGGACA 60.678 61.111 3.79 3.79 0.00 4.02
625 7684 7.224362 TGTGGATTTAGCAGTTTTGTCATTTTG 59.776 33.333 0.00 0.00 0.00 2.44
714 7773 2.613691 CATTTCCCATGCTGCAAGTTC 58.386 47.619 6.36 0.00 35.30 3.01
769 7828 6.270815 AGCTTGATTATCATTTGACATGTGC 58.729 36.000 1.15 0.00 0.00 4.57
958 8046 4.873746 ATATTAGCGTGCAGTCTACCAT 57.126 40.909 0.00 0.00 0.00 3.55
1279 8367 5.561532 CGAACTTCTCTACAGTTCCGTTGTA 60.562 44.000 7.13 0.00 45.07 2.41
1482 8570 1.000646 TTGGAATACCCGGGGCAAC 60.001 57.895 27.92 13.30 37.93 4.17
1605 8693 4.462483 TGGTTGATGCCCTCAAAATAAGAC 59.538 41.667 0.79 0.00 45.27 3.01
1681 8772 5.250313 TGGGGGCATCAAAATTAATGTCTTT 59.750 36.000 0.00 0.00 0.00 2.52
1770 8861 4.973168 TGACATAGCTTTCCTTGTGAAGT 58.027 39.130 0.00 0.00 33.63 3.01
2243 9380 2.283298 GAATGCTCGCCTGATCTTGAA 58.717 47.619 0.00 0.00 0.00 2.69
2460 9614 2.121506 ACCTTGGCCCTGGGAGAA 60.122 61.111 19.27 6.81 0.00 2.87
2534 9688 2.545946 GCTGCAAATTAAACCGGCAAAA 59.454 40.909 0.00 0.00 33.58 2.44
2631 9788 4.649674 CACAATAAGTACTCCCTCTGCCTA 59.350 45.833 0.00 0.00 0.00 3.93
2650 9807 9.953565 AAAGGATAACACTTACTAATAGCACAA 57.046 29.630 0.00 0.00 0.00 3.33
2662 9822 5.245531 CAGCTGACCAAAGGATAACACTTA 58.754 41.667 8.42 0.00 0.00 2.24
2678 9838 1.968540 GCTTGTGTCCCCAGCTGAC 60.969 63.158 17.39 6.14 0.00 3.51
2680 9840 2.674380 GGCTTGTGTCCCCAGCTG 60.674 66.667 6.78 6.78 0.00 4.24
2684 9844 4.641645 CAGCGGCTTGTGTCCCCA 62.642 66.667 0.00 0.00 0.00 4.96
2842 10014 6.498304 ACAGTTTCATGTCTTTGATTCACAC 58.502 36.000 0.00 0.00 0.00 3.82
2855 10027 2.154462 GCAGCAGGTACAGTTTCATGT 58.846 47.619 0.00 0.00 37.19 3.21
2871 10043 1.208642 GCTTTCCAAACACACGCAGC 61.209 55.000 0.00 0.00 0.00 5.25
2989 10194 2.878406 GCTGAATATTAAAGGCGGCAGA 59.122 45.455 13.08 0.00 0.00 4.26
2993 10198 6.017109 ACACAATAGCTGAATATTAAAGGCGG 60.017 38.462 0.00 0.00 0.00 6.13
3042 10247 5.295950 AGCGAGATTTGATCAATACCTGAG 58.704 41.667 9.40 4.93 37.52 3.35
3052 10257 4.495514 GCTTTCCAAGAGCGAGATTTGATC 60.496 45.833 0.00 0.00 0.00 2.92
3114 10319 6.498304 CAAGTAAATGGCCATATCTGTGTTC 58.502 40.000 21.15 2.51 0.00 3.18
3177 10384 0.680061 ACTCGTTCACTCCTTCACCC 59.320 55.000 0.00 0.00 0.00 4.61
3178 10385 2.528041 AACTCGTTCACTCCTTCACC 57.472 50.000 0.00 0.00 0.00 4.02
3179 10386 3.454375 TGAAACTCGTTCACTCCTTCAC 58.546 45.455 0.00 0.00 41.47 3.18
3238 10445 9.665719 GGATTGTTTGTTTGGATATGGTTTTAT 57.334 29.630 0.00 0.00 0.00 1.40
3239 10446 8.097662 GGGATTGTTTGTTTGGATATGGTTTTA 58.902 33.333 0.00 0.00 0.00 1.52
3240 10447 6.939730 GGGATTGTTTGTTTGGATATGGTTTT 59.060 34.615 0.00 0.00 0.00 2.43
3241 10448 6.272090 AGGGATTGTTTGTTTGGATATGGTTT 59.728 34.615 0.00 0.00 0.00 3.27
3242 10449 5.784906 AGGGATTGTTTGTTTGGATATGGTT 59.215 36.000 0.00 0.00 0.00 3.67
3243 10450 5.341169 AGGGATTGTTTGTTTGGATATGGT 58.659 37.500 0.00 0.00 0.00 3.55
3244 10451 5.937975 AGGGATTGTTTGTTTGGATATGG 57.062 39.130 0.00 0.00 0.00 2.74
3245 10452 6.833416 TCCTAGGGATTGTTTGTTTGGATATG 59.167 38.462 9.46 0.00 0.00 1.78
3246 10453 6.980577 TCCTAGGGATTGTTTGTTTGGATAT 58.019 36.000 9.46 0.00 0.00 1.63
3247 10454 6.395780 TCCTAGGGATTGTTTGTTTGGATA 57.604 37.500 9.46 0.00 0.00 2.59
3248 10455 5.269554 TCCTAGGGATTGTTTGTTTGGAT 57.730 39.130 9.46 0.00 0.00 3.41
3249 10456 4.733077 TCCTAGGGATTGTTTGTTTGGA 57.267 40.909 9.46 0.00 0.00 3.53
3250 10457 5.016173 TCATCCTAGGGATTGTTTGTTTGG 58.984 41.667 9.46 0.00 39.79 3.28
3251 10458 5.126061 CCTCATCCTAGGGATTGTTTGTTTG 59.874 44.000 9.46 0.00 39.79 2.93
3252 10459 5.015178 TCCTCATCCTAGGGATTGTTTGTTT 59.985 40.000 9.46 0.00 39.79 2.83
3253 10460 4.540099 TCCTCATCCTAGGGATTGTTTGTT 59.460 41.667 9.46 0.00 39.79 2.83
3254 10461 4.111577 TCCTCATCCTAGGGATTGTTTGT 58.888 43.478 9.46 0.00 39.79 2.83
3255 10462 4.445448 CCTCCTCATCCTAGGGATTGTTTG 60.445 50.000 9.46 0.00 39.79 2.93
3256 10463 3.718956 CCTCCTCATCCTAGGGATTGTTT 59.281 47.826 9.46 0.00 39.79 2.83
3257 10464 3.321950 CCTCCTCATCCTAGGGATTGTT 58.678 50.000 9.46 0.00 39.79 2.83
3258 10465 2.983296 CCTCCTCATCCTAGGGATTGT 58.017 52.381 9.46 0.00 39.79 2.71
3259 10466 1.627834 GCCTCCTCATCCTAGGGATTG 59.372 57.143 9.46 4.98 39.79 2.67
3260 10467 1.829261 CGCCTCCTCATCCTAGGGATT 60.829 57.143 9.46 0.00 39.79 3.01
3261 10468 0.252012 CGCCTCCTCATCCTAGGGAT 60.252 60.000 9.46 0.00 44.21 3.85
3262 10469 1.153989 CGCCTCCTCATCCTAGGGA 59.846 63.158 9.46 0.00 37.24 4.20
3263 10470 1.910772 CCGCCTCCTCATCCTAGGG 60.911 68.421 9.46 0.00 37.24 3.53
3264 10471 2.578714 GCCGCCTCCTCATCCTAGG 61.579 68.421 0.82 0.82 38.06 3.02
3265 10472 2.578714 GGCCGCCTCCTCATCCTAG 61.579 68.421 0.71 0.00 0.00 3.02
3266 10473 2.524394 GGCCGCCTCCTCATCCTA 60.524 66.667 0.71 0.00 0.00 2.94
3283 10490 3.787001 GACCCCCAAGCCTCTCCG 61.787 72.222 0.00 0.00 0.00 4.63
3284 10491 3.412408 GGACCCCCAAGCCTCTCC 61.412 72.222 0.00 0.00 0.00 3.71
3285 10492 2.610859 TGGACCCCCAAGCCTCTC 60.611 66.667 0.00 0.00 40.09 3.20
3294 10501 0.835971 AACAGGCAAAATGGACCCCC 60.836 55.000 0.00 0.00 0.00 5.40
3295 10502 1.055849 AAACAGGCAAAATGGACCCC 58.944 50.000 0.00 0.00 0.00 4.95
3296 10503 4.020662 TCAATAAACAGGCAAAATGGACCC 60.021 41.667 0.00 0.00 0.00 4.46
3297 10504 5.146010 TCAATAAACAGGCAAAATGGACC 57.854 39.130 0.00 0.00 0.00 4.46
3298 10505 5.118510 CGTTCAATAAACAGGCAAAATGGAC 59.881 40.000 0.00 0.00 37.77 4.02
3299 10506 5.226396 CGTTCAATAAACAGGCAAAATGGA 58.774 37.500 0.00 0.00 37.77 3.41
3300 10507 4.388469 CCGTTCAATAAACAGGCAAAATGG 59.612 41.667 0.00 0.00 37.77 3.16
3301 10508 5.118510 GTCCGTTCAATAAACAGGCAAAATG 59.881 40.000 0.00 0.00 37.77 2.32
3302 10509 5.227152 GTCCGTTCAATAAACAGGCAAAAT 58.773 37.500 0.00 0.00 37.77 1.82
3303 10510 4.612943 GTCCGTTCAATAAACAGGCAAAA 58.387 39.130 0.00 0.00 37.77 2.44
3304 10511 3.304123 CGTCCGTTCAATAAACAGGCAAA 60.304 43.478 0.00 0.00 37.77 3.68
3305 10512 2.224549 CGTCCGTTCAATAAACAGGCAA 59.775 45.455 0.00 0.00 37.77 4.52
3306 10513 1.801771 CGTCCGTTCAATAAACAGGCA 59.198 47.619 0.00 0.00 37.77 4.75
3307 10514 1.465187 GCGTCCGTTCAATAAACAGGC 60.465 52.381 0.00 0.00 37.77 4.85
3308 10515 1.801771 TGCGTCCGTTCAATAAACAGG 59.198 47.619 0.00 0.00 37.77 4.00
3309 10516 2.724839 GCTGCGTCCGTTCAATAAACAG 60.725 50.000 0.00 0.00 37.77 3.16
3310 10517 1.195900 GCTGCGTCCGTTCAATAAACA 59.804 47.619 0.00 0.00 37.77 2.83
3311 10518 1.785518 CGCTGCGTCCGTTCAATAAAC 60.786 52.381 14.93 0.00 34.31 2.01
3312 10519 0.440758 CGCTGCGTCCGTTCAATAAA 59.559 50.000 14.93 0.00 0.00 1.40
3313 10520 0.668096 ACGCTGCGTCCGTTCAATAA 60.668 50.000 23.57 0.00 33.69 1.40
3314 10521 1.080366 ACGCTGCGTCCGTTCAATA 60.080 52.632 23.57 0.00 33.69 1.90
3315 10522 2.357034 ACGCTGCGTCCGTTCAAT 60.357 55.556 23.57 0.00 33.69 2.57
3324 10531 1.380524 AGATAGTACTGACGCTGCGT 58.619 50.000 29.37 29.37 45.10 5.24
3325 10532 2.032302 AGAAGATAGTACTGACGCTGCG 59.968 50.000 21.91 21.91 0.00 5.18
3326 10533 3.623863 GAGAAGATAGTACTGACGCTGC 58.376 50.000 5.39 0.00 0.00 5.25
3327 10534 3.846744 GCGAGAAGATAGTACTGACGCTG 60.847 52.174 5.39 0.00 40.28 5.18
3328 10535 2.288458 GCGAGAAGATAGTACTGACGCT 59.712 50.000 5.39 2.98 40.28 5.07
3329 10536 2.288458 AGCGAGAAGATAGTACTGACGC 59.712 50.000 5.39 11.31 43.00 5.19
3330 10537 3.556365 TGAGCGAGAAGATAGTACTGACG 59.444 47.826 5.39 2.26 0.00 4.35
3331 10538 5.237561 TCATGAGCGAGAAGATAGTACTGAC 59.762 44.000 5.39 0.00 0.00 3.51
3332 10539 5.368989 TCATGAGCGAGAAGATAGTACTGA 58.631 41.667 5.39 0.00 0.00 3.41
3333 10540 5.681337 TCATGAGCGAGAAGATAGTACTG 57.319 43.478 5.39 0.00 0.00 2.74
3334 10541 6.488344 TGAATCATGAGCGAGAAGATAGTACT 59.512 38.462 0.09 0.00 0.00 2.73
3335 10542 6.673106 TGAATCATGAGCGAGAAGATAGTAC 58.327 40.000 0.09 0.00 0.00 2.73
3336 10543 6.884280 TGAATCATGAGCGAGAAGATAGTA 57.116 37.500 0.09 0.00 0.00 1.82
3337 10544 5.781210 TGAATCATGAGCGAGAAGATAGT 57.219 39.130 0.09 0.00 0.00 2.12
3338 10545 5.634439 CCTTGAATCATGAGCGAGAAGATAG 59.366 44.000 14.29 0.00 0.00 2.08
3339 10546 5.302823 TCCTTGAATCATGAGCGAGAAGATA 59.697 40.000 14.29 0.00 0.00 1.98
3340 10547 4.100653 TCCTTGAATCATGAGCGAGAAGAT 59.899 41.667 14.29 0.00 0.00 2.40
3341 10548 3.448660 TCCTTGAATCATGAGCGAGAAGA 59.551 43.478 14.29 4.64 0.00 2.87
3342 10549 3.555139 GTCCTTGAATCATGAGCGAGAAG 59.445 47.826 14.29 6.51 0.00 2.85
3343 10550 3.055891 TGTCCTTGAATCATGAGCGAGAA 60.056 43.478 14.29 0.00 0.00 2.87
3344 10551 2.497273 TGTCCTTGAATCATGAGCGAGA 59.503 45.455 14.29 0.00 0.00 4.04
3345 10552 2.864946 CTGTCCTTGAATCATGAGCGAG 59.135 50.000 0.09 5.18 0.00 5.03
3346 10553 2.897436 CTGTCCTTGAATCATGAGCGA 58.103 47.619 0.09 0.00 0.00 4.93
3347 10554 1.329906 GCTGTCCTTGAATCATGAGCG 59.670 52.381 0.09 0.00 0.00 5.03
3348 10555 2.355132 CAGCTGTCCTTGAATCATGAGC 59.645 50.000 5.25 0.00 0.00 4.26
3349 10556 2.943690 CCAGCTGTCCTTGAATCATGAG 59.056 50.000 13.81 0.00 0.00 2.90
3350 10557 2.306805 ACCAGCTGTCCTTGAATCATGA 59.693 45.455 13.81 0.00 0.00 3.07
3351 10558 2.681848 GACCAGCTGTCCTTGAATCATG 59.318 50.000 13.81 0.00 38.09 3.07
3352 10559 2.996631 GACCAGCTGTCCTTGAATCAT 58.003 47.619 13.81 0.00 38.09 2.45
3353 10560 2.479566 GACCAGCTGTCCTTGAATCA 57.520 50.000 13.81 0.00 38.09 2.57
3362 10569 1.448540 CGGATGTGGACCAGCTGTC 60.449 63.158 13.81 10.12 43.67 3.51
3363 10570 2.665000 CGGATGTGGACCAGCTGT 59.335 61.111 13.81 0.11 31.00 4.40
3364 10571 2.124983 CCGGATGTGGACCAGCTG 60.125 66.667 6.78 6.78 35.54 4.24
3365 10572 4.101448 GCCGGATGTGGACCAGCT 62.101 66.667 5.05 0.00 0.00 4.24
3381 10588 4.059459 CTCGTGTTCGTGTGGCGC 62.059 66.667 0.00 0.00 41.07 6.53
3382 10589 4.059459 GCTCGTGTTCGTGTGGCG 62.059 66.667 0.00 0.00 43.01 5.69
3383 10590 3.712881 GGCTCGTGTTCGTGTGGC 61.713 66.667 0.00 0.00 38.33 5.01
3384 10591 3.403057 CGGCTCGTGTTCGTGTGG 61.403 66.667 0.00 0.00 38.33 4.17
3385 10592 2.354188 TCGGCTCGTGTTCGTGTG 60.354 61.111 0.00 0.00 38.33 3.82
3386 10593 2.354305 GTCGGCTCGTGTTCGTGT 60.354 61.111 0.00 0.00 38.33 4.49
3387 10594 3.458579 CGTCGGCTCGTGTTCGTG 61.459 66.667 0.00 0.00 38.33 4.35
3388 10595 4.695231 CCGTCGGCTCGTGTTCGT 62.695 66.667 0.00 0.00 38.33 3.85
3401 10608 1.002684 CAGATAGTACTGACGCCCGTC 60.003 57.143 13.45 13.45 44.77 4.79
3402 10609 1.022735 CAGATAGTACTGACGCCCGT 58.977 55.000 5.39 0.00 39.94 5.28
3403 10610 1.002684 GACAGATAGTACTGACGCCCG 60.003 57.143 5.39 0.00 40.63 6.13
3404 10611 2.291190 GAGACAGATAGTACTGACGCCC 59.709 54.545 5.39 0.00 40.63 6.13
3405 10612 3.207778 AGAGACAGATAGTACTGACGCC 58.792 50.000 5.39 0.00 40.63 5.68
3406 10613 3.249080 GGAGAGACAGATAGTACTGACGC 59.751 52.174 5.39 0.00 40.63 5.19
3407 10614 3.491639 CGGAGAGACAGATAGTACTGACG 59.508 52.174 5.39 0.00 40.63 4.35
3408 10615 3.810941 CCGGAGAGACAGATAGTACTGAC 59.189 52.174 5.39 0.00 40.63 3.51
3409 10616 3.744846 GCCGGAGAGACAGATAGTACTGA 60.745 52.174 5.05 0.00 40.63 3.41
3410 10617 2.550606 GCCGGAGAGACAGATAGTACTG 59.449 54.545 5.05 0.00 42.78 2.74
3411 10618 2.487625 GGCCGGAGAGACAGATAGTACT 60.488 54.545 5.05 0.00 0.00 2.73
3412 10619 1.881324 GGCCGGAGAGACAGATAGTAC 59.119 57.143 5.05 0.00 0.00 2.73
3413 10620 1.542767 CGGCCGGAGAGACAGATAGTA 60.543 57.143 20.10 0.00 0.00 1.82
3414 10621 0.820074 CGGCCGGAGAGACAGATAGT 60.820 60.000 20.10 0.00 0.00 2.12
3415 10622 1.953017 CGGCCGGAGAGACAGATAG 59.047 63.158 20.10 0.00 0.00 2.08
3416 10623 2.194212 GCGGCCGGAGAGACAGATA 61.194 63.158 29.38 0.00 0.00 1.98
3417 10624 3.532155 GCGGCCGGAGAGACAGAT 61.532 66.667 29.38 0.00 0.00 2.90
3429 10636 4.115199 AATGGAGAGGTGGCGGCC 62.115 66.667 13.32 13.32 0.00 6.13
3430 10637 2.825836 CAATGGAGAGGTGGCGGC 60.826 66.667 0.00 0.00 0.00 6.53
3431 10638 1.450312 GACAATGGAGAGGTGGCGG 60.450 63.158 0.00 0.00 0.00 6.13
3432 10639 1.811266 CGACAATGGAGAGGTGGCG 60.811 63.158 0.00 0.00 37.46 5.69
3433 10640 1.450312 CCGACAATGGAGAGGTGGC 60.450 63.158 0.00 0.00 0.00 5.01
3434 10641 1.450312 GCCGACAATGGAGAGGTGG 60.450 63.158 0.00 0.00 0.00 4.61
3435 10642 1.450312 GGCCGACAATGGAGAGGTG 60.450 63.158 0.00 0.00 0.00 4.00
3436 10643 1.903877 CTGGCCGACAATGGAGAGGT 61.904 60.000 0.00 0.00 0.00 3.85
3437 10644 1.153289 CTGGCCGACAATGGAGAGG 60.153 63.158 0.00 0.00 0.00 3.69
3438 10645 1.153289 CCTGGCCGACAATGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
3439 10646 2.989639 CCTGGCCGACAATGGAGA 59.010 61.111 0.00 0.00 0.00 3.71
3440 10647 2.825836 GCCTGGCCGACAATGGAG 60.826 66.667 7.66 0.00 0.00 3.86
3441 10648 4.776322 CGCCTGGCCGACAATGGA 62.776 66.667 14.12 0.00 0.00 3.41
3443 10650 3.039202 GAACGCCTGGCCGACAATG 62.039 63.158 14.12 0.00 0.00 2.82
3444 10651 2.746277 GAACGCCTGGCCGACAAT 60.746 61.111 14.12 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.