Multiple sequence alignment - TraesCS3A01G514300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G514300 chr3A 100.000 2173 0 0 1 2173 733042949 733045121 0.000000e+00 4013
1 TraesCS3A01G514300 chr3A 100.000 1280 0 0 2403 3682 733045351 733046630 0.000000e+00 2364
2 TraesCS3A01G514300 chr3A 91.275 1616 131 9 556 2170 733624006 733622400 0.000000e+00 2194
3 TraesCS3A01G514300 chr3A 83.638 1424 188 22 783 2170 733726004 733724590 0.000000e+00 1297
4 TraesCS3A01G514300 chr3A 84.186 1056 149 12 10 1058 733563763 733562719 0.000000e+00 1009
5 TraesCS3A01G514300 chr3A 90.808 631 56 2 2403 3033 733622384 733621756 0.000000e+00 843
6 TraesCS3A01G514300 chr3A 85.826 642 77 8 2403 3033 733531730 733531092 0.000000e+00 669
7 TraesCS3A01G514300 chr3A 86.271 590 71 9 4 592 733538345 733537765 1.870000e-177 632
8 TraesCS3A01G514300 chr3A 82.780 633 83 10 1 631 733573271 733572663 3.230000e-150 542
9 TraesCS3A01G514300 chr3A 84.240 533 48 16 3143 3653 733621687 733621169 1.540000e-133 486
10 TraesCS3A01G514300 chr3A 83.333 192 24 5 3296 3479 733523104 733522913 1.760000e-38 171
11 TraesCS3A01G514300 chr3B 98.158 2172 39 1 1 2171 810951719 810953890 0.000000e+00 3788
12 TraesCS3A01G514300 chr3B 89.958 2161 178 15 19 2170 811113746 811111616 0.000000e+00 2752
13 TraesCS3A01G514300 chr3B 93.333 825 37 8 2403 3209 810953905 810954729 0.000000e+00 1203
14 TraesCS3A01G514300 chr3B 90.808 631 56 2 2403 3033 811111593 811110965 0.000000e+00 843
15 TraesCS3A01G514300 chr3B 88.316 291 32 2 2403 2692 811042173 811042462 7.570000e-92 348
16 TraesCS3A01G514300 chr3B 84.953 319 43 3 2403 2720 811080823 811081137 5.930000e-83 318
17 TraesCS3A01G514300 chr3B 91.379 174 12 2 3144 3316 811110894 811110723 6.150000e-58 235
18 TraesCS3A01G514300 chr3D 97.927 2171 45 0 1 2171 602800032 602797862 0.000000e+00 3760
19 TraesCS3A01G514300 chr3D 90.571 2153 166 13 19 2170 604125132 604123016 0.000000e+00 2817
20 TraesCS3A01G514300 chr3D 90.526 1140 105 3 1032 2170 604014855 604013718 0.000000e+00 1504
21 TraesCS3A01G514300 chr3D 83.303 1647 228 23 545 2170 604137805 604136185 0.000000e+00 1474
22 TraesCS3A01G514300 chr3D 94.206 932 34 10 2403 3316 602797844 602796915 0.000000e+00 1404
23 TraesCS3A01G514300 chr3D 86.982 1014 125 6 8 1020 604026880 604025873 0.000000e+00 1134
24 TraesCS3A01G514300 chr3D 82.619 1306 202 9 856 2144 604259200 604257903 0.000000e+00 1131
25 TraesCS3A01G514300 chr3D 86.093 1057 135 9 8 1058 604024467 604023417 0.000000e+00 1127
26 TraesCS3A01G514300 chr3D 85.147 1057 142 12 11 1062 604021572 604020526 0.000000e+00 1068
27 TraesCS3A01G514300 chr3D 89.072 485 38 4 2403 2887 604122996 604122527 4.100000e-164 588
28 TraesCS3A01G514300 chr3D 83.848 421 46 7 2404 2810 604013700 604013288 7.460000e-102 381
29 TraesCS3A01G514300 chr3D 87.973 291 34 1 2403 2692 603944981 603945271 3.520000e-90 342
30 TraesCS3A01G514300 chr3D 85.849 318 42 1 2403 2720 604142406 604142092 5.890000e-88 335
31 TraesCS3A01G514300 chr3D 91.228 228 18 2 2806 3033 604009755 604009530 3.570000e-80 309
32 TraesCS3A01G514300 chr3D 90.000 100 10 0 8 107 604016576 604016477 2.980000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G514300 chr3A 733042949 733046630 3681 False 3188.500000 4013 100.000000 1 3682 2 chr3A.!!$F1 3681
1 TraesCS3A01G514300 chr3A 733724590 733726004 1414 True 1297.000000 1297 83.638000 783 2170 1 chr3A.!!$R6 1387
2 TraesCS3A01G514300 chr3A 733621169 733624006 2837 True 1174.333333 2194 88.774333 556 3653 3 chr3A.!!$R7 3097
3 TraesCS3A01G514300 chr3A 733562719 733563763 1044 True 1009.000000 1009 84.186000 10 1058 1 chr3A.!!$R4 1048
4 TraesCS3A01G514300 chr3A 733531092 733531730 638 True 669.000000 669 85.826000 2403 3033 1 chr3A.!!$R2 630
5 TraesCS3A01G514300 chr3A 733537765 733538345 580 True 632.000000 632 86.271000 4 592 1 chr3A.!!$R3 588
6 TraesCS3A01G514300 chr3A 733572663 733573271 608 True 542.000000 542 82.780000 1 631 1 chr3A.!!$R5 630
7 TraesCS3A01G514300 chr3B 810951719 810954729 3010 False 2495.500000 3788 95.745500 1 3209 2 chr3B.!!$F3 3208
8 TraesCS3A01G514300 chr3B 811110723 811113746 3023 True 1276.666667 2752 90.715000 19 3316 3 chr3B.!!$R1 3297
9 TraesCS3A01G514300 chr3D 602796915 602800032 3117 True 2582.000000 3760 96.066500 1 3316 2 chr3D.!!$R4 3315
10 TraesCS3A01G514300 chr3D 604122527 604125132 2605 True 1702.500000 2817 89.821500 19 2887 2 chr3D.!!$R6 2868
11 TraesCS3A01G514300 chr3D 604136185 604137805 1620 True 1474.000000 1474 83.303000 545 2170 1 chr3D.!!$R1 1625
12 TraesCS3A01G514300 chr3D 604257903 604259200 1297 True 1131.000000 1131 82.619000 856 2144 1 chr3D.!!$R3 1288
13 TraesCS3A01G514300 chr3D 604009530 604026880 17350 True 807.571429 1504 87.689143 8 3033 7 chr3D.!!$R5 3025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 352 0.798776 GAGCCACATCGAACACCAAG 59.201 55.0 0.0 0.0 0.00 3.61 F
1158 12218 0.674895 ATGTCAGAGAAGCGGTTGGC 60.675 55.0 3.7 0.0 44.05 4.52 F
2159 13254 0.737715 TGTTTGTTGTGTTTGCGGCC 60.738 50.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 12681 2.851263 TGTTTAGTCGGTTGATGCCT 57.149 45.0 0.00 0.0 0.00 4.75 R
2548 13643 0.036010 AAGATCAGGTGCCCAACTCG 60.036 55.0 0.00 0.0 0.00 4.18 R
3273 17938 0.034670 GGTGCTGGAGCCTCAGAATT 60.035 55.0 7.94 0.0 41.18 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
349 352 0.798776 GAGCCACATCGAACACCAAG 59.201 55.000 0.00 0.00 0.00 3.61
359 362 4.336889 TCGAACACCAAGAAGAGACATT 57.663 40.909 0.00 0.00 0.00 2.71
485 488 6.884295 ACAATTAGTTGTACTGCATATGGTGT 59.116 34.615 1.14 0.00 46.37 4.16
517 541 7.862372 TGTTGTTCAGATGCTTGTTTAGATTTC 59.138 33.333 0.00 0.00 0.00 2.17
975 8839 4.588951 TGATATGTGGTAGAATCCTCGCTT 59.411 41.667 0.00 0.00 0.00 4.68
984 8854 4.689612 AGAATCCTCGCTTATTTAGGCA 57.310 40.909 0.00 0.00 0.00 4.75
1015 12025 7.277760 GTCTTTTGGAAATGCTACAACAGTTTT 59.722 33.333 0.00 0.00 0.00 2.43
1156 12216 1.338105 TGGATGTCAGAGAAGCGGTTG 60.338 52.381 3.70 0.00 0.00 3.77
1158 12218 0.674895 ATGTCAGAGAAGCGGTTGGC 60.675 55.000 3.70 0.00 44.05 4.52
1776 12840 5.044919 TCAGTCTGTTCCAATTGGGTATGAT 60.045 40.000 24.29 3.10 38.11 2.45
2066 13150 7.013655 ACCGCTTATTCATTATTTCAGAATGCT 59.986 33.333 0.00 0.00 34.82 3.79
2159 13254 0.737715 TGTTTGTTGTGTTTGCGGCC 60.738 50.000 0.00 0.00 0.00 6.13
2171 13266 1.558167 TTGCGGCCCCTAATGAGTCA 61.558 55.000 0.00 0.00 0.00 3.41
2548 13643 1.202031 CGATTTCGTGGCAAAGCTACC 60.202 52.381 0.00 0.00 36.69 3.18
2595 13690 5.622346 AGTGAAGATAGAATGGAAGGGTC 57.378 43.478 0.00 0.00 0.00 4.46
2678 13787 5.296748 GCCAAGGTCATTGTTACATTTTGT 58.703 37.500 0.00 0.00 37.17 2.83
2747 13856 2.665649 TGTGAATGTACCAGCTACGG 57.334 50.000 0.00 0.00 0.00 4.02
2908 17572 7.931407 TCCATATAAAACGCTATCATCTTGTGT 59.069 33.333 0.00 0.00 0.00 3.72
2926 17590 7.261325 TCTTGTGTTTTTGCAAGCAGTATTTA 58.739 30.769 0.00 0.00 41.15 1.40
2935 17599 9.703892 TTTTGCAAGCAGTATTTACATGTTTAT 57.296 25.926 2.30 0.29 0.00 1.40
3021 17685 1.677966 ATCTGTGCCTGCTTGCCAG 60.678 57.895 8.89 8.89 41.41 4.85
3068 17732 2.297597 GCGGATTCTATCTACAGCCAGT 59.702 50.000 0.00 0.00 0.00 4.00
3161 17825 6.442564 AGTTAGATTGGGTACATCTGGTTGTA 59.557 38.462 4.80 0.00 0.00 2.41
3162 17826 5.772393 AGATTGGGTACATCTGGTTGTAA 57.228 39.130 0.00 0.00 34.05 2.41
3228 17892 2.151202 GGTTGCAGCAGCTTGTACTTA 58.849 47.619 9.34 0.00 42.74 2.24
3233 17897 2.932622 GCAGCAGCTTGTACTTAGCTCA 60.933 50.000 16.85 0.00 45.52 4.26
3273 17938 2.299013 ACGAGGCAACATCTACACTGAA 59.701 45.455 0.00 0.00 41.41 3.02
3319 17984 5.052693 TCTGATGGAAGGAATTATGGTGG 57.947 43.478 0.00 0.00 0.00 4.61
3326 17991 0.746659 GGAATTATGGTGGGCACTGC 59.253 55.000 0.00 0.00 0.00 4.40
3342 18007 2.036256 GCCACTGGGGTGCTGAAT 59.964 61.111 0.00 0.00 41.75 2.57
3353 18018 1.407989 GGTGCTGAATTCCCTCCTCAG 60.408 57.143 2.27 0.00 39.69 3.35
3361 18026 0.972983 TTCCCTCCTCAGGAAGCTCG 60.973 60.000 0.00 0.00 43.65 5.03
3378 18043 0.109272 TCGCGGAACTGATGAGTGAC 60.109 55.000 6.13 0.00 30.61 3.67
3389 18054 2.820197 TGATGAGTGACGAGTACAAGCT 59.180 45.455 0.00 0.00 0.00 3.74
3407 18072 1.440708 CTGCAGAAAGCTGTGAGGAG 58.559 55.000 8.42 0.00 45.94 3.69
3415 18080 2.574006 AGCTGTGAGGAGCAAAATCA 57.426 45.000 0.00 0.00 41.83 2.57
3465 18131 4.889409 TCAATGCTTTTCTCAGGAAGTTGT 59.111 37.500 0.00 0.00 32.61 3.32
3485 18171 1.362584 TCTGACAGGGAGGAATGGAGA 59.637 52.381 1.81 0.00 0.00 3.71
3504 18190 1.408702 GAGACCAGGTGAGAGAGATGC 59.591 57.143 0.00 0.00 0.00 3.91
3516 18202 4.021632 TGAGAGAGATGCCCTATGAAATCG 60.022 45.833 0.00 0.00 0.00 3.34
3525 18211 2.103094 CCCTATGAAATCGAGGACTGCA 59.897 50.000 0.00 0.00 31.45 4.41
3537 18223 4.839668 GAGGACTGCATCGATAACTAGT 57.160 45.455 0.00 0.00 0.00 2.57
3548 18234 7.865889 TGCATCGATAACTAGTTAACTACATGG 59.134 37.037 18.88 4.81 0.00 3.66
3562 18248 0.615331 ACATGGACAAGCTCGACCAT 59.385 50.000 2.57 2.57 41.27 3.55
3584 18270 2.772515 GAGCTGGATAAAGTAGGGTGGT 59.227 50.000 0.00 0.00 0.00 4.16
3595 18281 1.774856 GTAGGGTGGTATCATGGGCTT 59.225 52.381 0.00 0.00 0.00 4.35
3596 18282 0.846693 AGGGTGGTATCATGGGCTTC 59.153 55.000 0.00 0.00 0.00 3.86
3601 18287 1.425066 TGGTATCATGGGCTTCATCCC 59.575 52.381 0.00 0.00 46.73 3.85
3607 18293 4.995594 GGGCTTCATCCCCAAGAG 57.004 61.111 0.00 0.00 42.36 2.85
3608 18294 1.454663 GGGCTTCATCCCCAAGAGC 60.455 63.158 0.00 0.00 42.36 4.09
3613 18299 0.181114 TTCATCCCCAAGAGCATCGG 59.819 55.000 0.00 0.00 42.67 4.18
3614 18300 1.895707 CATCCCCAAGAGCATCGGC 60.896 63.158 0.00 0.00 42.67 5.54
3623 18309 0.036732 AGAGCATCGGCAAGGTGAAA 59.963 50.000 0.00 0.00 44.61 2.69
3624 18310 0.881118 GAGCATCGGCAAGGTGAAAA 59.119 50.000 0.00 0.00 44.61 2.29
3625 18311 1.269448 GAGCATCGGCAAGGTGAAAAA 59.731 47.619 0.00 0.00 44.61 1.94
3627 18313 3.088532 AGCATCGGCAAGGTGAAAAATA 58.911 40.909 0.00 0.00 44.61 1.40
3633 18319 4.157656 TCGGCAAGGTGAAAAATATTGGAG 59.842 41.667 0.00 0.00 0.00 3.86
3634 18320 4.183865 GGCAAGGTGAAAAATATTGGAGC 58.816 43.478 0.00 0.00 0.00 4.70
3636 18322 5.127031 GGCAAGGTGAAAAATATTGGAGCTA 59.873 40.000 0.00 0.00 0.00 3.32
3653 18339 2.158035 AGCTATCCATGGGATCTCTGGT 60.158 50.000 13.02 0.00 42.11 4.00
3654 18340 2.235898 GCTATCCATGGGATCTCTGGTC 59.764 54.545 13.02 0.00 42.11 4.02
3655 18341 2.502068 ATCCATGGGATCTCTGGTCA 57.498 50.000 13.02 0.00 38.09 4.02
3656 18342 1.798626 TCCATGGGATCTCTGGTCAG 58.201 55.000 13.02 0.00 0.00 3.51
3657 18343 0.108207 CCATGGGATCTCTGGTCAGC 59.892 60.000 2.85 0.00 0.00 4.26
3658 18344 1.129917 CATGGGATCTCTGGTCAGCT 58.870 55.000 0.00 0.00 0.00 4.24
3659 18345 1.489649 CATGGGATCTCTGGTCAGCTT 59.510 52.381 0.00 0.00 0.00 3.74
3660 18346 0.907486 TGGGATCTCTGGTCAGCTTG 59.093 55.000 0.00 0.00 0.00 4.01
3661 18347 1.198713 GGGATCTCTGGTCAGCTTGA 58.801 55.000 0.00 0.00 0.00 3.02
3662 18348 1.138661 GGGATCTCTGGTCAGCTTGAG 59.861 57.143 0.00 0.00 0.00 3.02
3663 18349 1.473080 GGATCTCTGGTCAGCTTGAGC 60.473 57.143 7.99 7.99 44.54 4.26
3669 18355 3.312404 GGTCAGCTTGAGCAACTCA 57.688 52.632 5.70 0.00 43.79 3.41
3670 18356 1.597742 GGTCAGCTTGAGCAACTCAA 58.402 50.000 9.51 9.51 46.50 3.02
3679 18365 4.882671 TTGAGCAACTCAAACTCAAGTC 57.117 40.909 7.54 0.00 45.84 3.01
3680 18366 2.866156 TGAGCAACTCAAACTCAAGTCG 59.134 45.455 0.00 0.00 37.57 4.18
3681 18367 2.866762 GAGCAACTCAAACTCAAGTCGT 59.133 45.455 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
349 352 7.913674 AATCAACTTACTCCAATGTCTCTTC 57.086 36.000 0.00 0.00 0.00 2.87
359 362 4.079253 GGAAGCCAAATCAACTTACTCCA 58.921 43.478 0.00 0.00 0.00 3.86
975 8839 3.349022 CAAAAGACGGGGTGCCTAAATA 58.651 45.455 0.00 0.00 0.00 1.40
984 8854 0.966179 GCATTTCCAAAAGACGGGGT 59.034 50.000 0.00 0.00 0.00 4.95
1015 12025 6.244552 ACTCATTGCTTCAGAATCCAGATA 57.755 37.500 0.00 0.00 0.00 1.98
1156 12216 3.268023 ACTTGATAAGGTGCTAGTGCC 57.732 47.619 0.00 0.00 38.71 5.01
1158 12218 5.812642 CCAAGTACTTGATAAGGTGCTAGTG 59.187 44.000 32.50 10.14 42.93 2.74
1616 12680 3.965379 TGTTTAGTCGGTTGATGCCTA 57.035 42.857 0.00 0.00 0.00 3.93
1617 12681 2.851263 TGTTTAGTCGGTTGATGCCT 57.149 45.000 0.00 0.00 0.00 4.75
1776 12840 6.361433 TGACTTCTTGACATGGTTTTCCTTA 58.639 36.000 0.00 0.00 41.38 2.69
2066 13150 3.067106 CGCAAGCTTCTTCAAGTTAGGA 58.933 45.455 0.00 0.00 31.45 2.94
2548 13643 0.036010 AAGATCAGGTGCCCAACTCG 60.036 55.000 0.00 0.00 0.00 4.18
2563 13658 8.766476 TCCATTCTATCTTCACTTCTTCAAGAT 58.234 33.333 0.00 0.00 39.63 2.40
2567 13662 7.334090 CCTTCCATTCTATCTTCACTTCTTCA 58.666 38.462 0.00 0.00 0.00 3.02
2595 13690 4.304110 AGAACAATGCTGCAATCTGTTTG 58.696 39.130 21.36 15.96 38.43 2.93
2678 13787 1.476833 GCGATGGGGGAGCATTCTTAA 60.477 52.381 0.00 0.00 0.00 1.85
2747 13856 3.809832 CACACATATAACCACCAGCTAGC 59.190 47.826 6.62 6.62 0.00 3.42
2900 17564 4.127566 ACTGCTTGCAAAAACACAAGAT 57.872 36.364 0.00 0.00 44.89 2.40
2901 17565 3.591196 ACTGCTTGCAAAAACACAAGA 57.409 38.095 0.00 0.00 44.89 3.02
2908 17572 8.430801 AAACATGTAAATACTGCTTGCAAAAA 57.569 26.923 0.00 0.00 0.00 1.94
2926 17590 4.202141 CGGGGATTGCATTGATAAACATGT 60.202 41.667 0.00 0.00 0.00 3.21
2935 17599 0.621082 TACCACGGGGATTGCATTGA 59.379 50.000 12.96 0.00 38.05 2.57
3021 17685 2.229784 CCTTTGATCTGGGTGCTTTGTC 59.770 50.000 0.00 0.00 0.00 3.18
3068 17732 1.691976 ACCTCAACTGATGTTCGGTGA 59.308 47.619 0.00 0.00 35.86 4.02
3192 17856 2.675348 GCAACCAAGAGCAGAGTATGTC 59.325 50.000 0.00 0.00 0.00 3.06
3228 17892 4.841422 AGCATGTTAAGATCACTTGAGCT 58.159 39.130 0.00 0.00 43.46 4.09
3233 17897 4.820897 TCGTGAGCATGTTAAGATCACTT 58.179 39.130 9.46 0.00 46.92 3.16
3273 17938 0.034670 GGTGCTGGAGCCTCAGAATT 60.035 55.000 7.94 0.00 41.18 2.17
3326 17991 0.967380 GGAATTCAGCACCCCAGTGG 60.967 60.000 7.93 0.63 44.69 4.00
3337 18002 2.421248 GCTTCCTGAGGAGGGAATTCAG 60.421 54.545 12.87 0.41 41.34 3.02
3342 18007 0.972983 CGAGCTTCCTGAGGAGGGAA 60.973 60.000 12.87 0.00 40.25 3.97
3353 18018 1.153549 ATCAGTTCCGCGAGCTTCC 60.154 57.895 8.23 0.00 0.00 3.46
3361 18026 0.109272 TCGTCACTCATCAGTTCCGC 60.109 55.000 0.00 0.00 0.00 5.54
3378 18043 1.127582 GCTTTCTGCAGCTTGTACTCG 59.872 52.381 9.47 0.00 42.31 4.18
3389 18054 0.604780 GCTCCTCACAGCTTTCTGCA 60.605 55.000 0.00 0.00 44.10 4.41
3399 18064 2.574006 AGCTGATTTTGCTCCTCACA 57.426 45.000 0.00 0.00 35.67 3.58
3415 18080 0.320247 CAGCCGAGTTTCAGTGAGCT 60.320 55.000 0.00 0.00 0.00 4.09
3457 18123 1.002544 CCTCCCTGTCAGACAACTTCC 59.997 57.143 4.41 0.00 0.00 3.46
3465 18131 1.362584 TCTCCATTCCTCCCTGTCAGA 59.637 52.381 0.00 0.00 0.00 3.27
3485 18171 1.484038 GCATCTCTCTCACCTGGTCT 58.516 55.000 0.00 0.00 0.00 3.85
3504 18190 2.103094 TGCAGTCCTCGATTTCATAGGG 59.897 50.000 0.00 0.00 0.00 3.53
3516 18202 4.839668 ACTAGTTATCGATGCAGTCCTC 57.160 45.455 8.54 0.00 0.00 3.71
3525 18211 9.128404 TGTCCATGTAGTTAACTAGTTATCGAT 57.872 33.333 15.68 2.16 0.00 3.59
3530 18216 8.130671 AGCTTGTCCATGTAGTTAACTAGTTA 57.869 34.615 15.68 11.38 0.00 2.24
3531 18217 7.005709 AGCTTGTCCATGTAGTTAACTAGTT 57.994 36.000 15.68 13.68 0.00 2.24
3532 18218 6.607004 AGCTTGTCCATGTAGTTAACTAGT 57.393 37.500 15.68 5.22 0.00 2.57
3533 18219 5.744345 CGAGCTTGTCCATGTAGTTAACTAG 59.256 44.000 15.68 4.57 0.00 2.57
3534 18220 5.416639 TCGAGCTTGTCCATGTAGTTAACTA 59.583 40.000 11.38 11.38 0.00 2.24
3535 18221 4.219944 TCGAGCTTGTCCATGTAGTTAACT 59.780 41.667 13.68 13.68 0.00 2.24
3536 18222 4.326548 GTCGAGCTTGTCCATGTAGTTAAC 59.673 45.833 0.00 0.00 0.00 2.01
3537 18223 4.491676 GTCGAGCTTGTCCATGTAGTTAA 58.508 43.478 0.00 0.00 0.00 2.01
3562 18248 2.771943 CCACCCTACTTTATCCAGCTCA 59.228 50.000 0.00 0.00 0.00 4.26
3567 18253 5.309543 CCATGATACCACCCTACTTTATCCA 59.690 44.000 0.00 0.00 0.00 3.41
3578 18264 0.550914 TGAAGCCCATGATACCACCC 59.449 55.000 0.00 0.00 0.00 4.61
3595 18281 1.832219 CCGATGCTCTTGGGGATGA 59.168 57.895 0.00 0.00 0.00 2.92
3596 18282 1.895707 GCCGATGCTCTTGGGGATG 60.896 63.158 0.00 0.00 33.53 3.51
3601 18287 1.377725 ACCTTGCCGATGCTCTTGG 60.378 57.895 0.00 0.00 38.71 3.61
3605 18291 0.881118 TTTTCACCTTGCCGATGCTC 59.119 50.000 0.00 0.00 38.71 4.26
3607 18293 2.368655 ATTTTTCACCTTGCCGATGC 57.631 45.000 0.00 0.00 38.26 3.91
3608 18294 4.805192 CCAATATTTTTCACCTTGCCGATG 59.195 41.667 0.00 0.00 0.00 3.84
3613 18299 5.077134 AGCTCCAATATTTTTCACCTTGC 57.923 39.130 0.00 0.00 0.00 4.01
3614 18300 7.428826 GGATAGCTCCAATATTTTTCACCTTG 58.571 38.462 0.00 0.00 41.64 3.61
3633 18319 2.235898 GACCAGAGATCCCATGGATAGC 59.764 54.545 15.22 3.46 43.27 2.97
3634 18320 3.514539 TGACCAGAGATCCCATGGATAG 58.485 50.000 15.22 0.00 43.27 2.08
3636 18322 2.336891 CTGACCAGAGATCCCATGGAT 58.663 52.381 15.22 4.71 46.28 3.41
3640 18326 1.489649 CAAGCTGACCAGAGATCCCAT 59.510 52.381 0.47 0.00 0.00 4.00
3641 18327 0.907486 CAAGCTGACCAGAGATCCCA 59.093 55.000 0.47 0.00 0.00 4.37
3645 18331 1.273759 TGCTCAAGCTGACCAGAGAT 58.726 50.000 3.32 0.00 42.66 2.75
3658 18344 3.309682 CGACTTGAGTTTGAGTTGCTCAA 59.690 43.478 7.41 7.41 46.93 3.02
3659 18345 2.866156 CGACTTGAGTTTGAGTTGCTCA 59.134 45.455 0.00 0.00 38.87 4.26
3660 18346 2.866762 ACGACTTGAGTTTGAGTTGCTC 59.133 45.455 0.00 0.00 31.71 4.26
3661 18347 2.906354 ACGACTTGAGTTTGAGTTGCT 58.094 42.857 0.00 0.00 31.71 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.