Multiple sequence alignment - TraesCS3A01G513800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G513800 chr3A 100.000 5092 0 0 1 5092 732881585 732876494 0.000000e+00 9404
1 TraesCS3A01G513800 chr3A 80.774 801 82 35 4343 5088 44228853 44229636 1.240000e-155 560
2 TraesCS3A01G513800 chr3D 91.628 3464 187 49 669 4105 603221523 603224910 0.000000e+00 4695
3 TraesCS3A01G513800 chr3D 94.309 615 30 5 1 613 458879111 458878500 0.000000e+00 937
4 TraesCS3A01G513800 chr3D 94.281 612 34 1 1 612 288150539 288149929 0.000000e+00 935
5 TraesCS3A01G513800 chr3D 94.426 610 31 2 1 610 304918068 304917462 0.000000e+00 935
6 TraesCS3A01G513800 chr3B 89.018 3096 243 50 989 4061 810563835 810560814 0.000000e+00 3744
7 TraesCS3A01G513800 chr3B 85.167 209 21 3 617 818 810564118 810563913 6.680000e-49 206
8 TraesCS3A01G513800 chr3B 89.032 155 12 3 4173 4326 810258483 810258333 2.420000e-43 187
9 TraesCS3A01G513800 chr5D 94.754 610 32 0 1 610 332361058 332360449 0.000000e+00 950
10 TraesCS3A01G513800 chr5D 94.137 614 35 1 1 613 332354184 332353571 0.000000e+00 933
11 TraesCS3A01G513800 chr5D 84.189 740 60 36 4378 5092 106623395 106624102 0.000000e+00 665
12 TraesCS3A01G513800 chr5D 83.356 751 85 24 4343 5083 526686467 526685747 0.000000e+00 658
13 TraesCS3A01G513800 chr5D 82.653 784 83 31 4343 5090 479526465 479525699 0.000000e+00 645
14 TraesCS3A01G513800 chr4D 94.754 610 31 1 1 610 294440862 294441470 0.000000e+00 948
15 TraesCS3A01G513800 chr1A 94.608 612 30 3 1 611 252182838 252182229 0.000000e+00 944
16 TraesCS3A01G513800 chr1A 87.302 189 24 0 4895 5083 29856487 29856299 3.090000e-52 217
17 TraesCS3A01G513800 chr1A 86.111 180 25 0 4892 5071 236925869 236926048 1.450000e-45 195
18 TraesCS3A01G513800 chr6D 94.581 609 32 1 1 609 379082177 379082784 0.000000e+00 941
19 TraesCS3A01G513800 chr6D 82.828 792 76 22 4343 5090 396461558 396462333 0.000000e+00 654
20 TraesCS3A01G513800 chr6D 85.537 484 69 1 4608 5090 355867512 355867995 5.880000e-139 505
21 TraesCS3A01G513800 chr6D 84.375 256 26 10 4431 4674 411189505 411189252 6.590000e-59 239
22 TraesCS3A01G513800 chr7D 94.426 610 33 1 1 610 174119038 174118430 0.000000e+00 937
23 TraesCS3A01G513800 chr7D 84.203 747 69 24 4387 5090 480997891 480998631 0.000000e+00 680
24 TraesCS3A01G513800 chr7D 86.495 622 57 12 4343 4943 427904152 427903537 0.000000e+00 658
25 TraesCS3A01G513800 chr7D 78.233 781 120 25 4345 5090 106391541 106390776 6.010000e-124 455
26 TraesCS3A01G513800 chr7D 81.728 405 37 16 4343 4714 556285293 556284893 2.300000e-78 303
27 TraesCS3A01G513800 chr7D 84.456 193 23 3 4899 5090 274693743 274693557 3.130000e-42 183
28 TraesCS3A01G513800 chr7B 83.230 805 75 24 4343 5090 720341910 720342711 0.000000e+00 684
29 TraesCS3A01G513800 chr2A 82.955 792 74 23 4348 5090 335708703 335707924 0.000000e+00 658
30 TraesCS3A01G513800 chr5A 86.226 530 60 4 4573 5090 286003414 286003942 3.440000e-156 562
31 TraesCS3A01G513800 chr5A 83.062 614 65 21 4512 5090 663940683 663940074 5.840000e-144 521
32 TraesCS3A01G513800 chr7A 81.791 659 71 21 4343 4964 181796136 181796782 1.640000e-139 507
33 TraesCS3A01G513800 chr6B 80.510 667 59 33 4460 5090 708387498 708388129 3.620000e-121 446
34 TraesCS3A01G513800 chrUn 82.405 449 48 20 4382 4802 333863292 333862847 3.750000e-96 363
35 TraesCS3A01G513800 chr6A 80.208 288 45 9 4622 4897 108885490 108885203 6.680000e-49 206
36 TraesCS3A01G513800 chr4A 85.279 197 28 1 4895 5090 692360062 692360258 8.640000e-48 202
37 TraesCS3A01G513800 chr1D 85.263 190 21 3 4902 5090 439020494 439020311 6.730000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G513800 chr3A 732876494 732881585 5091 True 9404 9404 100.0000 1 5092 1 chr3A.!!$R1 5091
1 TraesCS3A01G513800 chr3A 44228853 44229636 783 False 560 560 80.7740 4343 5088 1 chr3A.!!$F1 745
2 TraesCS3A01G513800 chr3D 603221523 603224910 3387 False 4695 4695 91.6280 669 4105 1 chr3D.!!$F1 3436
3 TraesCS3A01G513800 chr3D 458878500 458879111 611 True 937 937 94.3090 1 613 1 chr3D.!!$R3 612
4 TraesCS3A01G513800 chr3D 288149929 288150539 610 True 935 935 94.2810 1 612 1 chr3D.!!$R1 611
5 TraesCS3A01G513800 chr3D 304917462 304918068 606 True 935 935 94.4260 1 610 1 chr3D.!!$R2 609
6 TraesCS3A01G513800 chr3B 810560814 810564118 3304 True 1975 3744 87.0925 617 4061 2 chr3B.!!$R2 3444
7 TraesCS3A01G513800 chr5D 332360449 332361058 609 True 950 950 94.7540 1 610 1 chr5D.!!$R2 609
8 TraesCS3A01G513800 chr5D 332353571 332354184 613 True 933 933 94.1370 1 613 1 chr5D.!!$R1 612
9 TraesCS3A01G513800 chr5D 106623395 106624102 707 False 665 665 84.1890 4378 5092 1 chr5D.!!$F1 714
10 TraesCS3A01G513800 chr5D 526685747 526686467 720 True 658 658 83.3560 4343 5083 1 chr5D.!!$R4 740
11 TraesCS3A01G513800 chr5D 479525699 479526465 766 True 645 645 82.6530 4343 5090 1 chr5D.!!$R3 747
12 TraesCS3A01G513800 chr4D 294440862 294441470 608 False 948 948 94.7540 1 610 1 chr4D.!!$F1 609
13 TraesCS3A01G513800 chr1A 252182229 252182838 609 True 944 944 94.6080 1 611 1 chr1A.!!$R2 610
14 TraesCS3A01G513800 chr6D 379082177 379082784 607 False 941 941 94.5810 1 609 1 chr6D.!!$F2 608
15 TraesCS3A01G513800 chr6D 396461558 396462333 775 False 654 654 82.8280 4343 5090 1 chr6D.!!$F3 747
16 TraesCS3A01G513800 chr7D 174118430 174119038 608 True 937 937 94.4260 1 610 1 chr7D.!!$R2 609
17 TraesCS3A01G513800 chr7D 480997891 480998631 740 False 680 680 84.2030 4387 5090 1 chr7D.!!$F1 703
18 TraesCS3A01G513800 chr7D 427903537 427904152 615 True 658 658 86.4950 4343 4943 1 chr7D.!!$R4 600
19 TraesCS3A01G513800 chr7D 106390776 106391541 765 True 455 455 78.2330 4345 5090 1 chr7D.!!$R1 745
20 TraesCS3A01G513800 chr7B 720341910 720342711 801 False 684 684 83.2300 4343 5090 1 chr7B.!!$F1 747
21 TraesCS3A01G513800 chr2A 335707924 335708703 779 True 658 658 82.9550 4348 5090 1 chr2A.!!$R1 742
22 TraesCS3A01G513800 chr5A 286003414 286003942 528 False 562 562 86.2260 4573 5090 1 chr5A.!!$F1 517
23 TraesCS3A01G513800 chr5A 663940074 663940683 609 True 521 521 83.0620 4512 5090 1 chr5A.!!$R1 578
24 TraesCS3A01G513800 chr7A 181796136 181796782 646 False 507 507 81.7910 4343 4964 1 chr7A.!!$F1 621
25 TraesCS3A01G513800 chr6B 708387498 708388129 631 False 446 446 80.5100 4460 5090 1 chr6B.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 624 0.322816 CCTTCAGCTTTAGCCCAGCA 60.323 55.000 0.0 0.0 43.38 4.41 F
629 631 1.002624 TTTAGCCCAGCAAGACCGG 60.003 57.895 0.0 0.0 0.00 5.28 F
994 1013 1.134670 GCCTGAGTTGCCTACCACTAG 60.135 57.143 0.0 0.0 0.00 2.57 F
2195 2233 1.173913 GGCACGCCCTTGTTCTTTAT 58.826 50.000 0.0 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2233 0.319555 GTGTGCTAGGTGCGAAGTCA 60.320 55.000 0.00 0.0 46.63 3.41 R
2542 2580 2.247358 TGGCCAAAAATCTGGAGAACC 58.753 47.619 0.61 0.0 38.96 3.62 R
2629 2668 2.946762 GCACAGCCGAGTTGGAAC 59.053 61.111 0.00 0.0 42.00 3.62 R
4111 4156 0.104120 GGCGTGCCAAAAAGTTCCTT 59.896 50.000 5.89 0.0 35.81 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 148 9.823647 AGTGACAAATTGTAATCTCGATCTATT 57.176 29.630 0.00 0.00 0.00 1.73
230 232 3.623510 TGTGACGTTTGATAGCACACAAA 59.376 39.130 0.00 0.00 34.85 2.83
236 238 4.437495 CGTTTGATAGCACACAAAGTGTTG 59.563 41.667 0.00 0.00 45.08 3.33
242 244 1.133025 GCACACAAAGTGTTGCTCTGT 59.867 47.619 0.00 0.00 45.08 3.41
442 444 8.470002 GGAAACTTAACCATCTTTGATTAGCAT 58.530 33.333 0.00 0.00 0.00 3.79
463 465 2.961741 TGCTAGTCAAGGAGAGGCATAG 59.038 50.000 0.00 0.00 0.00 2.23
614 616 9.396022 CTTTAGGACATATTTCCTTCAGCTTTA 57.604 33.333 15.55 0.00 44.22 1.85
615 617 8.964476 TTAGGACATATTTCCTTCAGCTTTAG 57.036 34.615 15.55 0.00 44.22 1.85
622 624 0.322816 CCTTCAGCTTTAGCCCAGCA 60.323 55.000 0.00 0.00 43.38 4.41
629 631 1.002624 TTTAGCCCAGCAAGACCGG 60.003 57.895 0.00 0.00 0.00 5.28
630 632 3.622060 TTAGCCCAGCAAGACCGGC 62.622 63.158 0.00 0.00 41.96 6.13
634 636 2.335712 CCCAGCAAGACCGGCTTTC 61.336 63.158 0.00 0.20 40.23 2.62
646 648 2.512515 GCTTTCGGCCAGAGCGAT 60.513 61.111 2.24 0.00 41.24 4.58
649 651 3.716539 TTTCGGCCAGAGCGATCGG 62.717 63.158 18.30 7.11 41.24 4.18
660 662 1.741770 GCGATCGGGCAAGACAAGT 60.742 57.895 18.30 0.00 0.00 3.16
665 667 2.186160 CGGGCAAGACAAGTGTGCA 61.186 57.895 7.51 0.00 40.12 4.57
673 675 4.293415 CAAGACAAGTGTGCATCTTTTCC 58.707 43.478 13.36 4.51 28.85 3.13
780 796 8.943909 ATAACAAGTTTTAGAGAAGGGTATCG 57.056 34.615 0.00 0.00 0.00 2.92
782 798 5.247792 ACAAGTTTTAGAGAAGGGTATCGGT 59.752 40.000 0.00 0.00 0.00 4.69
832 851 8.592529 TGGTCCAATTATGAGAAATTGATTCA 57.407 30.769 10.15 3.75 45.61 2.57
850 869 4.589216 TTCAGCAACTTTAGCAAAGCAT 57.411 36.364 8.09 0.00 42.27 3.79
852 871 5.300969 TCAGCAACTTTAGCAAAGCATAG 57.699 39.130 8.09 0.00 42.27 2.23
857 876 3.420893 ACTTTAGCAAAGCATAGGCACA 58.579 40.909 0.67 0.00 44.61 4.57
872 891 3.860641 AGGCACACCTCAAAAACAAAAG 58.139 40.909 0.00 0.00 46.34 2.27
892 911 3.323243 AGCAAAAGCAAAGCATAAGCAG 58.677 40.909 0.00 0.00 45.49 4.24
901 920 4.668177 GCAAAGCATAAGCAGCACAAAATG 60.668 41.667 0.00 0.00 45.49 2.32
916 935 5.466819 CACAAAATGAGCTGTGACATGAAT 58.533 37.500 0.00 0.00 44.68 2.57
926 945 5.184479 AGCTGTGACATGAATTTTGTAGCAT 59.816 36.000 0.00 0.00 31.59 3.79
927 946 6.375174 AGCTGTGACATGAATTTTGTAGCATA 59.625 34.615 0.00 2.07 31.59 3.14
928 947 7.028962 GCTGTGACATGAATTTTGTAGCATAA 58.971 34.615 0.00 0.00 30.27 1.90
929 948 7.219535 GCTGTGACATGAATTTTGTAGCATAAG 59.780 37.037 0.00 3.74 30.27 1.73
930 949 8.334263 TGTGACATGAATTTTGTAGCATAAGA 57.666 30.769 0.00 0.00 0.00 2.10
931 950 8.236586 TGTGACATGAATTTTGTAGCATAAGAC 58.763 33.333 0.00 0.00 0.00 3.01
932 951 8.236586 GTGACATGAATTTTGTAGCATAAGACA 58.763 33.333 0.00 0.00 0.00 3.41
933 952 8.236586 TGACATGAATTTTGTAGCATAAGACAC 58.763 33.333 0.00 0.00 0.00 3.67
994 1013 1.134670 GCCTGAGTTGCCTACCACTAG 60.135 57.143 0.00 0.00 0.00 2.57
1665 1700 2.696187 GGGATCTAAGGACTCGAAAGCT 59.304 50.000 0.00 0.00 0.00 3.74
1682 1717 1.211818 GCTTCAGCTAGCATCGACGG 61.212 60.000 18.83 6.98 40.89 4.79
1737 1772 1.548269 GTAGCCTCTGTCTCTGTGCTT 59.452 52.381 0.00 0.00 0.00 3.91
1937 1973 2.001838 GAGGAGGGGAAGGGGTTCC 61.002 68.421 0.00 0.00 40.38 3.62
2035 2071 1.918262 AGCTCATGGTGGATCAAAGGA 59.082 47.619 0.00 0.00 0.00 3.36
2051 2087 2.835580 AGGATCATGCGGATGAGAAG 57.164 50.000 24.15 0.00 42.01 2.85
2057 2093 3.995199 TCATGCGGATGAGAAGGATAAC 58.005 45.455 16.33 0.00 33.40 1.89
2114 2150 5.067153 TCTCTGTCTAGTTAGCTTGCTCATC 59.933 44.000 0.00 0.00 0.00 2.92
2135 2171 4.060205 TCGTGGGTAAACTAAACTCTTGC 58.940 43.478 0.00 0.00 0.00 4.01
2139 2175 5.179555 GTGGGTAAACTAAACTCTTGCTCTG 59.820 44.000 0.00 0.00 0.00 3.35
2195 2233 1.173913 GGCACGCCCTTGTTCTTTAT 58.826 50.000 0.00 0.00 0.00 1.40
2202 2240 3.181520 CGCCCTTGTTCTTTATGACTTCG 60.182 47.826 0.00 0.00 0.00 3.79
2347 2385 8.407064 TGGTAATTTGGTTGTTACACTTACTTG 58.593 33.333 0.00 0.00 33.53 3.16
2348 2386 7.863877 GGTAATTTGGTTGTTACACTTACTTGG 59.136 37.037 0.00 0.00 33.53 3.61
2353 2391 6.518493 TGGTTGTTACACTTACTTGGAGTAG 58.482 40.000 0.00 0.00 31.47 2.57
2365 2403 8.741841 ACTTACTTGGAGTAGTCTTTCTGTATC 58.258 37.037 0.00 0.00 31.47 2.24
2511 2549 4.937015 GGTGCATTGGACAAGCATTATTTT 59.063 37.500 10.61 0.00 40.78 1.82
2520 2558 8.309163 TGGACAAGCATTATTTTCATTTTCAC 57.691 30.769 0.00 0.00 0.00 3.18
2558 2597 1.202348 GGGCGGTTCTCCAGATTTTTG 59.798 52.381 0.00 0.00 0.00 2.44
2561 2600 1.202348 CGGTTCTCCAGATTTTTGGCC 59.798 52.381 0.00 0.00 38.16 5.36
2579 2618 4.199310 TGGCCAAACTGTTATGATAGCTC 58.801 43.478 0.61 0.00 0.00 4.09
2583 2622 4.271049 CCAAACTGTTATGATAGCTCACCG 59.729 45.833 0.00 0.00 33.22 4.94
2587 2626 6.216801 ACTGTTATGATAGCTCACCGTAAA 57.783 37.500 0.00 0.00 33.22 2.01
2593 2632 4.631131 TGATAGCTCACCGTAAATCCATG 58.369 43.478 0.00 0.00 0.00 3.66
2629 2668 2.355007 GGAAACCATTGCAATCCCCTTG 60.355 50.000 9.53 0.00 37.94 3.61
2658 2697 1.008538 GCTGTGCGGGACTTTGTTG 60.009 57.895 0.31 0.00 0.00 3.33
2671 2710 6.332630 GGGACTTTGTTGGTTTCATGATATG 58.667 40.000 0.00 0.00 0.00 1.78
2737 2776 3.244215 TGAAGTCCAACCTAGACAGCAAG 60.244 47.826 0.00 0.00 36.68 4.01
2738 2778 1.002544 AGTCCAACCTAGACAGCAAGC 59.997 52.381 0.00 0.00 36.68 4.01
2807 2847 1.680338 GTGCTGGTTCAGTGTTCCTT 58.320 50.000 7.58 0.00 33.43 3.36
2810 2850 1.876156 GCTGGTTCAGTGTTCCTTCAG 59.124 52.381 7.58 0.00 33.43 3.02
2818 2858 5.097742 TCAGTGTTCCTTCAGTCTTTTGA 57.902 39.130 0.00 0.00 0.00 2.69
2826 2866 5.063880 TCCTTCAGTCTTTTGAACCTTAGC 58.936 41.667 0.00 0.00 33.71 3.09
2869 2910 9.458374 TGAACTTGCAAGCTTTTTATTACTTAC 57.542 29.630 26.27 0.00 0.00 2.34
2900 2941 5.300034 TGGCTTTAATCGATGCATTCTGATT 59.700 36.000 19.84 19.84 34.36 2.57
2912 2953 4.703093 TGCATTCTGATTGCTTCATTCTGA 59.297 37.500 21.03 0.18 40.77 3.27
2914 2955 5.163642 GCATTCTGATTGCTTCATTCTGACT 60.164 40.000 15.26 0.00 37.14 3.41
2920 2961 6.558009 TGATTGCTTCATTCTGACTTATTGC 58.442 36.000 0.00 0.00 0.00 3.56
2973 3014 5.647658 TGCCTCCAAGATACAATGTACAAAG 59.352 40.000 0.00 0.00 0.00 2.77
2980 3021 8.192774 CCAAGATACAATGTACAAAGCATGATT 58.807 33.333 0.00 0.00 0.00 2.57
3030 3071 5.255443 AGTTCCCTTATCCCAATTAGGTTGT 59.745 40.000 0.00 0.00 36.01 3.32
3034 3075 5.359860 CCCTTATCCCAATTAGGTTGTGTTC 59.640 44.000 0.00 0.00 36.01 3.18
3044 3087 7.437748 CAATTAGGTTGTGTTCCACCATTTAA 58.562 34.615 0.00 0.00 32.73 1.52
3045 3088 7.604657 ATTAGGTTGTGTTCCACCATTTAAA 57.395 32.000 0.00 0.00 32.73 1.52
3105 3148 5.178797 AGAACATGGTATTTCTGAAGTCCG 58.821 41.667 0.00 0.00 30.65 4.79
3107 3150 5.160607 ACATGGTATTTCTGAAGTCCGAA 57.839 39.130 0.00 0.00 0.00 4.30
3108 3151 4.935808 ACATGGTATTTCTGAAGTCCGAAC 59.064 41.667 0.00 0.00 0.00 3.95
3109 3152 4.884668 TGGTATTTCTGAAGTCCGAACT 57.115 40.909 0.00 0.00 37.32 3.01
3273 3316 6.585695 AACTTGAACTTCATGCTGATGATT 57.414 33.333 4.89 0.00 38.43 2.57
3287 3330 3.916761 TGATGATTTGAACTTGCAAGGC 58.083 40.909 29.18 20.48 0.00 4.35
3293 3336 1.174712 TGAACTTGCAAGGCCTCTGC 61.175 55.000 29.18 24.52 0.00 4.26
3338 3381 6.499106 TGATTCTATTCTGGCCTATTGACA 57.501 37.500 3.32 0.00 0.00 3.58
3360 3403 1.196808 GTTGGCCTGTTGTCATGTACG 59.803 52.381 3.32 0.00 0.00 3.67
3361 3404 0.682292 TGGCCTGTTGTCATGTACGA 59.318 50.000 3.32 0.00 0.00 3.43
3495 3538 7.001674 TCCTTGTGCTAATCCTTTTCAGTTTA 58.998 34.615 0.00 0.00 0.00 2.01
3511 3554 9.726438 TTTTCAGTTTAATCTTCTTCTCCCTAG 57.274 33.333 0.00 0.00 0.00 3.02
3526 3569 1.681793 CCCTAGGGATCGTGTGTAGTG 59.318 57.143 24.99 0.00 37.50 2.74
3535 3578 1.134367 TCGTGTGTAGTGCATAGCTCC 59.866 52.381 0.00 0.00 0.00 4.70
3537 3580 2.417379 CGTGTGTAGTGCATAGCTCCTT 60.417 50.000 0.00 0.00 0.00 3.36
3538 3581 3.181490 CGTGTGTAGTGCATAGCTCCTTA 60.181 47.826 0.00 0.00 0.00 2.69
3545 3588 3.713764 AGTGCATAGCTCCTTACTTCCAT 59.286 43.478 0.00 0.00 0.00 3.41
3555 3598 5.008118 GCTCCTTACTTCCATCTTATGTTGC 59.992 44.000 0.00 0.00 0.00 4.17
3558 3601 7.175104 TCCTTACTTCCATCTTATGTTGCTTT 58.825 34.615 0.00 0.00 0.00 3.51
3559 3602 7.669722 TCCTTACTTCCATCTTATGTTGCTTTT 59.330 33.333 0.00 0.00 0.00 2.27
3591 3634 1.303888 AGACCTAGAACCGCCGACA 60.304 57.895 0.00 0.00 0.00 4.35
3606 3649 1.474320 CCGACACCAAGACCAAAGACA 60.474 52.381 0.00 0.00 0.00 3.41
3678 3721 1.153568 CACGACCATCGATGCAGGT 60.154 57.895 20.25 12.75 43.74 4.00
3769 3812 1.261238 GGGTGAGGACTGAGGACTGG 61.261 65.000 0.00 0.00 0.00 4.00
3857 3902 2.548480 GCCTTGCTTTCTTACACGAGTT 59.452 45.455 0.00 0.00 0.00 3.01
3858 3903 3.744426 GCCTTGCTTTCTTACACGAGTTA 59.256 43.478 0.00 0.00 0.00 2.24
3864 3909 4.806330 CTTTCTTACACGAGTTAGCTCCA 58.194 43.478 0.48 0.00 38.49 3.86
3867 3912 3.439476 TCTTACACGAGTTAGCTCCAGTC 59.561 47.826 0.48 0.00 38.49 3.51
3878 3923 2.609747 AGCTCCAGTCAAACCTCTGTA 58.390 47.619 0.00 0.00 0.00 2.74
3939 3984 4.057406 ACATGTTGATGGTGTTGTTTGG 57.943 40.909 0.00 0.00 33.39 3.28
4027 4072 3.325753 GAGGTGCAGAGGCTGGGT 61.326 66.667 0.00 0.00 41.91 4.51
4030 4075 3.958860 GTGCAGAGGCTGGGTGGT 61.959 66.667 0.00 0.00 41.91 4.16
4061 4106 8.952278 GTGGGAAAGAAAAATAAACCTTGTTTT 58.048 29.630 0.00 0.00 35.82 2.43
4062 4107 9.521841 TGGGAAAGAAAAATAAACCTTGTTTTT 57.478 25.926 6.37 6.37 43.55 1.94
4105 4150 4.637534 AGTGCTATGTGCCTAAAGTGATTG 59.362 41.667 0.00 0.00 42.00 2.67
4106 4151 4.635765 GTGCTATGTGCCTAAAGTGATTGA 59.364 41.667 0.00 0.00 42.00 2.57
4107 4152 4.877823 TGCTATGTGCCTAAAGTGATTGAG 59.122 41.667 0.00 0.00 42.00 3.02
4108 4153 4.260948 GCTATGTGCCTAAAGTGATTGAGC 60.261 45.833 0.00 0.00 35.15 4.26
4109 4154 3.423539 TGTGCCTAAAGTGATTGAGCT 57.576 42.857 0.00 0.00 0.00 4.09
4110 4155 3.338249 TGTGCCTAAAGTGATTGAGCTC 58.662 45.455 6.82 6.82 0.00 4.09
4111 4156 3.244526 TGTGCCTAAAGTGATTGAGCTCA 60.245 43.478 13.74 13.74 0.00 4.26
4112 4157 3.753272 GTGCCTAAAGTGATTGAGCTCAA 59.247 43.478 30.23 30.23 40.51 3.02
4113 4158 4.005650 TGCCTAAAGTGATTGAGCTCAAG 58.994 43.478 31.14 16.50 39.47 3.02
4114 4159 3.376546 GCCTAAAGTGATTGAGCTCAAGG 59.623 47.826 31.14 24.42 39.47 3.61
4115 4160 4.836825 CCTAAAGTGATTGAGCTCAAGGA 58.163 43.478 31.14 18.65 39.47 3.36
4116 4161 5.248640 CCTAAAGTGATTGAGCTCAAGGAA 58.751 41.667 31.14 17.71 39.47 3.36
4117 4162 5.123027 CCTAAAGTGATTGAGCTCAAGGAAC 59.877 44.000 31.14 26.03 39.47 3.62
4130 4175 1.739667 AGGAACTTTTTGGCACGCC 59.260 52.632 0.00 0.00 27.25 5.68
4131 4176 1.660264 GGAACTTTTTGGCACGCCG 60.660 57.895 3.13 0.00 39.42 6.46
4132 4177 2.279186 AACTTTTTGGCACGCCGC 60.279 55.556 3.13 0.00 39.42 6.53
4155 4200 2.888513 CGAAGGAGCAACATGTCAAG 57.111 50.000 0.00 0.00 0.00 3.02
4156 4201 1.466167 CGAAGGAGCAACATGTCAAGG 59.534 52.381 0.00 0.00 0.00 3.61
4157 4202 2.508526 GAAGGAGCAACATGTCAAGGT 58.491 47.619 0.00 0.00 0.00 3.50
4158 4203 2.664402 AGGAGCAACATGTCAAGGTT 57.336 45.000 0.00 0.00 0.00 3.50
4159 4204 2.949447 AGGAGCAACATGTCAAGGTTT 58.051 42.857 0.00 0.00 0.00 3.27
4160 4205 2.624838 AGGAGCAACATGTCAAGGTTTG 59.375 45.455 0.00 0.00 0.00 2.93
4161 4206 2.362077 GGAGCAACATGTCAAGGTTTGT 59.638 45.455 0.00 0.00 0.00 2.83
4162 4207 3.550842 GGAGCAACATGTCAAGGTTTGTC 60.551 47.826 0.00 0.00 0.00 3.18
4163 4208 3.290710 AGCAACATGTCAAGGTTTGTCT 58.709 40.909 0.00 0.00 0.00 3.41
4164 4209 3.316308 AGCAACATGTCAAGGTTTGTCTC 59.684 43.478 0.00 0.00 0.00 3.36
4165 4210 3.849645 GCAACATGTCAAGGTTTGTCTCG 60.850 47.826 0.00 0.00 0.00 4.04
4166 4211 3.194005 ACATGTCAAGGTTTGTCTCGT 57.806 42.857 0.00 0.00 0.00 4.18
4167 4212 3.541632 ACATGTCAAGGTTTGTCTCGTT 58.458 40.909 0.00 0.00 0.00 3.85
4168 4213 3.312421 ACATGTCAAGGTTTGTCTCGTTG 59.688 43.478 0.00 0.00 33.69 4.10
4169 4214 1.668751 TGTCAAGGTTTGTCTCGTTGC 59.331 47.619 0.00 0.00 32.84 4.17
4170 4215 1.940613 GTCAAGGTTTGTCTCGTTGCT 59.059 47.619 0.00 0.00 32.84 3.91
4171 4216 2.032808 GTCAAGGTTTGTCTCGTTGCTC 60.033 50.000 0.00 0.00 32.84 4.26
4172 4217 1.070577 CAAGGTTTGTCTCGTTGCTCG 60.071 52.381 0.00 0.00 41.41 5.03
4173 4218 0.600255 AGGTTTGTCTCGTTGCTCGG 60.600 55.000 2.56 0.00 40.32 4.63
4174 4219 1.204312 GTTTGTCTCGTTGCTCGGC 59.796 57.895 2.56 0.00 40.32 5.54
4175 4220 1.227409 TTTGTCTCGTTGCTCGGCA 60.227 52.632 0.00 0.00 40.32 5.69
4176 4221 0.812014 TTTGTCTCGTTGCTCGGCAA 60.812 50.000 7.15 7.15 46.80 4.52
4183 4228 4.063529 TTGCTCGGCAAGTCCTTG 57.936 55.556 7.15 2.63 43.99 3.61
4209 4254 3.691342 CGAGGGTTGGCCGAGACA 61.691 66.667 0.00 0.00 34.97 3.41
4210 4255 2.747686 GAGGGTTGGCCGAGACAA 59.252 61.111 0.00 0.00 34.97 3.18
4211 4256 1.072505 GAGGGTTGGCCGAGACAAA 59.927 57.895 0.00 0.00 29.78 2.83
4212 4257 0.322546 GAGGGTTGGCCGAGACAAAT 60.323 55.000 0.00 0.00 29.78 2.32
4213 4258 0.988832 AGGGTTGGCCGAGACAAATA 59.011 50.000 0.00 0.00 29.78 1.40
4214 4259 1.564348 AGGGTTGGCCGAGACAAATAT 59.436 47.619 0.00 0.00 29.78 1.28
4215 4260 1.676006 GGGTTGGCCGAGACAAATATG 59.324 52.381 0.00 0.00 29.78 1.78
4216 4261 1.676006 GGTTGGCCGAGACAAATATGG 59.324 52.381 0.00 0.00 29.78 2.74
4217 4262 2.639065 GTTGGCCGAGACAAATATGGA 58.361 47.619 0.00 0.00 29.78 3.41
4218 4263 2.614057 GTTGGCCGAGACAAATATGGAG 59.386 50.000 0.00 0.00 29.78 3.86
4219 4264 1.140852 TGGCCGAGACAAATATGGAGG 59.859 52.381 0.00 0.00 0.00 4.30
4220 4265 1.141053 GGCCGAGACAAATATGGAGGT 59.859 52.381 0.00 0.00 0.00 3.85
4221 4266 2.484889 GCCGAGACAAATATGGAGGTC 58.515 52.381 0.00 0.00 0.00 3.85
4222 4267 2.158957 GCCGAGACAAATATGGAGGTCA 60.159 50.000 0.00 0.00 32.79 4.02
4223 4268 3.722147 CCGAGACAAATATGGAGGTCAG 58.278 50.000 0.00 0.00 32.79 3.51
4224 4269 3.126831 CGAGACAAATATGGAGGTCAGC 58.873 50.000 0.00 0.00 32.79 4.26
4225 4270 3.430790 CGAGACAAATATGGAGGTCAGCA 60.431 47.826 0.00 0.00 32.79 4.41
4226 4271 4.712476 GAGACAAATATGGAGGTCAGCAT 58.288 43.478 0.00 0.00 32.79 3.79
4227 4272 4.458397 AGACAAATATGGAGGTCAGCATG 58.542 43.478 0.00 0.00 32.79 4.06
4238 4283 3.071671 TCAGCATGAGGTGAGACCA 57.928 52.632 0.00 0.00 46.52 4.02
4239 4284 1.576577 TCAGCATGAGGTGAGACCAT 58.423 50.000 0.00 0.00 46.52 3.55
4240 4285 1.911357 TCAGCATGAGGTGAGACCATT 59.089 47.619 0.00 0.00 46.52 3.16
4241 4286 2.014857 CAGCATGAGGTGAGACCATTG 58.985 52.381 0.00 0.00 45.95 2.82
4242 4287 1.632409 AGCATGAGGTGAGACCATTGT 59.368 47.619 0.00 0.00 41.95 2.71
4243 4288 2.040813 AGCATGAGGTGAGACCATTGTT 59.959 45.455 0.00 0.00 41.95 2.83
4244 4289 2.163010 GCATGAGGTGAGACCATTGTTG 59.837 50.000 0.00 0.00 41.95 3.33
4245 4290 3.415212 CATGAGGTGAGACCATTGTTGT 58.585 45.455 0.00 0.00 41.95 3.32
4246 4291 3.126001 TGAGGTGAGACCATTGTTGTC 57.874 47.619 0.00 0.00 41.95 3.18
4247 4292 2.437651 TGAGGTGAGACCATTGTTGTCA 59.562 45.455 0.00 0.00 41.95 3.58
4248 4293 3.070018 GAGGTGAGACCATTGTTGTCAG 58.930 50.000 0.00 0.00 41.95 3.51
4249 4294 2.154462 GGTGAGACCATTGTTGTCAGG 58.846 52.381 0.00 0.00 38.42 3.86
4250 4295 2.487265 GGTGAGACCATTGTTGTCAGGT 60.487 50.000 0.00 0.00 38.42 4.00
4251 4296 2.549754 GTGAGACCATTGTTGTCAGGTG 59.450 50.000 0.00 0.00 35.15 4.00
4252 4297 2.154462 GAGACCATTGTTGTCAGGTGG 58.846 52.381 0.00 0.00 37.27 4.61
4253 4298 1.494721 AGACCATTGTTGTCAGGTGGT 59.505 47.619 0.00 0.00 42.67 4.16
4254 4299 1.880027 GACCATTGTTGTCAGGTGGTC 59.120 52.381 7.04 7.04 44.98 4.02
4255 4300 1.247567 CCATTGTTGTCAGGTGGTCC 58.752 55.000 0.00 0.00 0.00 4.46
4256 4301 0.874390 CATTGTTGTCAGGTGGTCCG 59.126 55.000 0.00 0.00 39.05 4.79
4257 4302 0.472471 ATTGTTGTCAGGTGGTCCGT 59.528 50.000 0.00 0.00 39.05 4.69
4258 4303 0.462937 TTGTTGTCAGGTGGTCCGTG 60.463 55.000 0.00 0.00 39.05 4.94
4259 4304 1.145377 GTTGTCAGGTGGTCCGTGT 59.855 57.895 0.00 0.00 39.05 4.49
4260 4305 0.878961 GTTGTCAGGTGGTCCGTGTC 60.879 60.000 0.00 0.00 39.05 3.67
4261 4306 2.035237 TTGTCAGGTGGTCCGTGTCC 62.035 60.000 0.00 0.00 39.05 4.02
4262 4307 2.200370 TCAGGTGGTCCGTGTCCT 59.800 61.111 0.00 0.00 39.05 3.85
4263 4308 0.896940 GTCAGGTGGTCCGTGTCCTA 60.897 60.000 0.00 0.00 39.05 2.94
4264 4309 0.896940 TCAGGTGGTCCGTGTCCTAC 60.897 60.000 0.00 0.00 39.05 3.18
4265 4310 1.608627 AGGTGGTCCGTGTCCTACC 60.609 63.158 0.00 0.00 39.05 3.18
4266 4311 1.608627 GGTGGTCCGTGTCCTACCT 60.609 63.158 0.00 0.00 34.23 3.08
4267 4312 1.590147 GTGGTCCGTGTCCTACCTG 59.410 63.158 0.00 0.00 34.23 4.00
4268 4313 1.154454 TGGTCCGTGTCCTACCTGT 59.846 57.895 0.00 0.00 34.23 4.00
4269 4314 1.183030 TGGTCCGTGTCCTACCTGTG 61.183 60.000 0.00 0.00 34.23 3.66
4270 4315 1.183676 GGTCCGTGTCCTACCTGTGT 61.184 60.000 0.00 0.00 0.00 3.72
4271 4316 0.038526 GTCCGTGTCCTACCTGTGTG 60.039 60.000 0.00 0.00 0.00 3.82
4272 4317 0.468585 TCCGTGTCCTACCTGTGTGT 60.469 55.000 0.00 0.00 0.00 3.72
4273 4318 1.202915 TCCGTGTCCTACCTGTGTGTA 60.203 52.381 0.00 0.00 0.00 2.90
4274 4319 1.822990 CCGTGTCCTACCTGTGTGTAT 59.177 52.381 0.00 0.00 0.00 2.29
4275 4320 2.416836 CCGTGTCCTACCTGTGTGTATG 60.417 54.545 0.00 0.00 0.00 2.39
4276 4321 2.416836 CGTGTCCTACCTGTGTGTATGG 60.417 54.545 0.00 0.00 0.00 2.74
4277 4322 2.829720 GTGTCCTACCTGTGTGTATGGA 59.170 50.000 0.00 0.00 0.00 3.41
4278 4323 3.259876 GTGTCCTACCTGTGTGTATGGAA 59.740 47.826 0.00 0.00 0.00 3.53
4279 4324 3.259876 TGTCCTACCTGTGTGTATGGAAC 59.740 47.826 0.00 0.00 0.00 3.62
4280 4325 2.835764 TCCTACCTGTGTGTATGGAACC 59.164 50.000 0.00 0.00 0.00 3.62
4281 4326 2.569853 CCTACCTGTGTGTATGGAACCA 59.430 50.000 0.00 0.00 0.00 3.67
4282 4327 2.561478 ACCTGTGTGTATGGAACCAC 57.439 50.000 0.00 0.00 32.80 4.16
4283 4328 1.771854 ACCTGTGTGTATGGAACCACA 59.228 47.619 0.00 0.00 39.16 4.17
4284 4329 2.173782 ACCTGTGTGTATGGAACCACAA 59.826 45.455 0.00 0.00 42.73 3.33
4285 4330 2.552315 CCTGTGTGTATGGAACCACAAC 59.448 50.000 0.00 0.00 42.73 3.32
4286 4331 2.552315 CTGTGTGTATGGAACCACAACC 59.448 50.000 0.00 0.00 42.73 3.77
4287 4332 1.883926 GTGTGTATGGAACCACAACCC 59.116 52.381 0.00 0.00 42.73 4.11
4288 4333 1.161843 GTGTATGGAACCACAACCCG 58.838 55.000 0.00 0.00 0.00 5.28
4289 4334 0.037017 TGTATGGAACCACAACCCGG 59.963 55.000 0.00 0.00 0.00 5.73
4290 4335 0.325602 GTATGGAACCACAACCCGGA 59.674 55.000 0.73 0.00 0.00 5.14
4291 4336 0.616371 TATGGAACCACAACCCGGAG 59.384 55.000 0.73 0.00 0.00 4.63
4304 4349 2.434331 CGGAGGGGCTGTTTTGGA 59.566 61.111 0.00 0.00 0.00 3.53
4305 4350 1.228429 CGGAGGGGCTGTTTTGGAA 60.228 57.895 0.00 0.00 0.00 3.53
4306 4351 0.611896 CGGAGGGGCTGTTTTGGAAT 60.612 55.000 0.00 0.00 0.00 3.01
4307 4352 0.897621 GGAGGGGCTGTTTTGGAATG 59.102 55.000 0.00 0.00 0.00 2.67
4308 4353 1.632589 GAGGGGCTGTTTTGGAATGT 58.367 50.000 0.00 0.00 0.00 2.71
4309 4354 1.970640 GAGGGGCTGTTTTGGAATGTT 59.029 47.619 0.00 0.00 0.00 2.71
4310 4355 1.970640 AGGGGCTGTTTTGGAATGTTC 59.029 47.619 0.00 0.00 0.00 3.18
4311 4356 1.691434 GGGGCTGTTTTGGAATGTTCA 59.309 47.619 0.00 0.00 0.00 3.18
4312 4357 2.289010 GGGGCTGTTTTGGAATGTTCAG 60.289 50.000 0.00 0.00 0.00 3.02
4313 4358 2.289010 GGGCTGTTTTGGAATGTTCAGG 60.289 50.000 0.00 0.00 0.00 3.86
4314 4359 2.289010 GGCTGTTTTGGAATGTTCAGGG 60.289 50.000 0.00 0.00 0.00 4.45
4315 4360 2.365293 GCTGTTTTGGAATGTTCAGGGT 59.635 45.455 0.00 0.00 0.00 4.34
4316 4361 3.552890 GCTGTTTTGGAATGTTCAGGGTC 60.553 47.826 0.00 0.00 0.00 4.46
4317 4362 3.891366 CTGTTTTGGAATGTTCAGGGTCT 59.109 43.478 0.00 0.00 0.00 3.85
4318 4363 3.636300 TGTTTTGGAATGTTCAGGGTCTG 59.364 43.478 0.00 0.00 0.00 3.51
4319 4364 3.874383 TTTGGAATGTTCAGGGTCTGA 57.126 42.857 0.00 0.00 38.87 3.27
4320 4365 3.874383 TTGGAATGTTCAGGGTCTGAA 57.126 42.857 6.28 6.28 46.50 3.02
4329 4374 3.845781 TCAGGGTCTGAATAATCCAGC 57.154 47.619 0.00 0.00 37.57 4.85
4330 4375 3.387962 TCAGGGTCTGAATAATCCAGCT 58.612 45.455 0.00 0.00 37.57 4.24
4331 4376 4.556697 TCAGGGTCTGAATAATCCAGCTA 58.443 43.478 0.00 0.00 37.57 3.32
4332 4377 4.968719 TCAGGGTCTGAATAATCCAGCTAA 59.031 41.667 0.00 0.00 37.57 3.09
4333 4378 5.428457 TCAGGGTCTGAATAATCCAGCTAAA 59.572 40.000 0.00 0.00 37.57 1.85
4334 4379 5.529060 CAGGGTCTGAATAATCCAGCTAAAC 59.471 44.000 0.00 0.00 32.44 2.01
4335 4380 4.822350 GGGTCTGAATAATCCAGCTAAACC 59.178 45.833 0.00 0.00 0.00 3.27
4336 4381 5.398012 GGGTCTGAATAATCCAGCTAAACCT 60.398 44.000 0.00 0.00 30.21 3.50
4337 4382 6.183361 GGGTCTGAATAATCCAGCTAAACCTA 60.183 42.308 0.00 0.00 30.21 3.08
4338 4383 7.280356 GGTCTGAATAATCCAGCTAAACCTAA 58.720 38.462 0.00 0.00 0.00 2.69
4339 4384 7.442666 GGTCTGAATAATCCAGCTAAACCTAAG 59.557 40.741 0.00 0.00 0.00 2.18
4340 4385 8.204836 GTCTGAATAATCCAGCTAAACCTAAGA 58.795 37.037 0.00 0.00 0.00 2.10
4341 4386 8.424918 TCTGAATAATCCAGCTAAACCTAAGAG 58.575 37.037 0.00 0.00 0.00 2.85
4423 4472 1.464722 CATGGGGGTGAGTGGGTTT 59.535 57.895 0.00 0.00 0.00 3.27
4431 4480 2.359975 GAGTGGGTTTCCAGCCGG 60.360 66.667 0.00 0.00 45.05 6.13
4432 4481 3.920093 GAGTGGGTTTCCAGCCGGG 62.920 68.421 2.18 0.00 45.05 5.73
4433 4482 4.280019 GTGGGTTTCCAGCCGGGT 62.280 66.667 0.00 0.00 45.05 5.28
4434 4483 3.961414 TGGGTTTCCAGCCGGGTC 61.961 66.667 1.27 0.00 44.44 4.46
4645 4778 1.816863 TTCTCCTTCTTGACGCGGCT 61.817 55.000 15.80 0.00 0.00 5.52
4723 4865 3.873883 GTCGCCGTCGTCGAGGAT 61.874 66.667 16.16 0.00 39.71 3.24
4734 4876 1.153309 TCGAGGATGACGACGCCTA 60.153 57.895 0.00 0.00 34.85 3.93
4750 4892 4.682334 TACCTCGTCCCGGCCACA 62.682 66.667 2.24 0.00 0.00 4.17
4809 4952 1.978455 TTCCAACTCCGTGTGTGCCT 61.978 55.000 0.00 0.00 0.00 4.75
4826 4969 1.080093 CTAGTCTTCACGCGCCCAA 60.080 57.895 5.73 0.00 0.00 4.12
4867 5016 3.764466 CTCCTCCTTCACGCCGCT 61.764 66.667 0.00 0.00 0.00 5.52
5089 5252 4.707584 CGGAGGAATGGAGGAGGA 57.292 61.111 0.00 0.00 0.00 3.71
5090 5253 2.128729 CGGAGGAATGGAGGAGGAC 58.871 63.158 0.00 0.00 0.00 3.85
5091 5254 0.397816 CGGAGGAATGGAGGAGGACT 60.398 60.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 132 7.582667 TGAGTTGGAATAGATCGAGATTACA 57.417 36.000 0.00 0.00 0.00 2.41
131 133 7.921214 TGTTGAGTTGGAATAGATCGAGATTAC 59.079 37.037 0.00 0.00 0.00 1.89
146 148 2.616376 CGATGGTGTTTGTTGAGTTGGA 59.384 45.455 0.00 0.00 0.00 3.53
230 232 2.301870 TCCCGAATAACAGAGCAACACT 59.698 45.455 0.00 0.00 0.00 3.55
236 238 1.666189 GCAACTCCCGAATAACAGAGC 59.334 52.381 0.00 0.00 0.00 4.09
242 244 5.924356 TGAGATTATGCAACTCCCGAATAA 58.076 37.500 0.00 0.00 0.00 1.40
442 444 1.871418 ATGCCTCTCCTTGACTAGCA 58.129 50.000 0.00 0.00 0.00 3.49
453 455 2.888414 GAGTGTCCCTACTATGCCTCTC 59.112 54.545 0.00 0.00 0.00 3.20
463 465 4.338379 AGACAAAACTGAGTGTCCCTAC 57.662 45.455 0.36 0.00 44.30 3.18
590 592 7.499232 GCTAAAGCTGAAGGAAATATGTCCTAA 59.501 37.037 15.24 6.03 41.79 2.69
595 597 4.889995 GGGCTAAAGCTGAAGGAAATATGT 59.110 41.667 1.39 0.00 41.70 2.29
629 631 2.512515 ATCGCTCTGGCCGAAAGC 60.513 61.111 12.50 12.50 42.60 3.51
630 632 2.233654 CGATCGCTCTGGCCGAAAG 61.234 63.158 0.26 0.00 34.44 2.62
640 642 1.424493 CTTGTCTTGCCCGATCGCTC 61.424 60.000 10.32 3.63 0.00 5.03
643 645 0.670546 ACACTTGTCTTGCCCGATCG 60.671 55.000 8.51 8.51 0.00 3.69
645 647 1.237285 GCACACTTGTCTTGCCCGAT 61.237 55.000 0.00 0.00 0.00 4.18
646 648 1.891919 GCACACTTGTCTTGCCCGA 60.892 57.895 0.00 0.00 0.00 5.14
649 651 1.242076 AGATGCACACTTGTCTTGCC 58.758 50.000 0.00 0.00 35.26 4.52
660 662 3.068024 GGTTGACAAGGAAAAGATGCACA 59.932 43.478 0.00 0.00 0.00 4.57
665 667 3.815401 CGACTGGTTGACAAGGAAAAGAT 59.185 43.478 0.00 0.00 0.00 2.40
756 772 7.038799 ACCGATACCCTTCTCTAAAACTTGTTA 60.039 37.037 0.00 0.00 0.00 2.41
757 773 6.171213 CCGATACCCTTCTCTAAAACTTGTT 58.829 40.000 0.00 0.00 0.00 2.83
758 774 5.247792 ACCGATACCCTTCTCTAAAACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
759 775 5.731591 ACCGATACCCTTCTCTAAAACTTG 58.268 41.667 0.00 0.00 0.00 3.16
832 851 3.119352 GCCTATGCTTTGCTAAAGTTGCT 60.119 43.478 9.40 0.00 40.64 3.91
852 871 2.351418 GCTTTTGTTTTTGAGGTGTGCC 59.649 45.455 0.00 0.00 0.00 5.01
857 876 5.295431 GCTTTTGCTTTTGTTTTTGAGGT 57.705 34.783 0.00 0.00 43.35 3.85
872 891 2.159747 GCTGCTTATGCTTTGCTTTTGC 60.160 45.455 1.96 0.00 42.47 3.68
892 911 2.780065 TGTCACAGCTCATTTTGTGC 57.220 45.000 0.00 0.00 43.31 4.57
901 920 5.091431 GCTACAAAATTCATGTCACAGCTC 58.909 41.667 0.51 0.00 30.75 4.09
916 935 5.008217 GGTGTGTGTGTCTTATGCTACAAAA 59.992 40.000 0.00 0.00 0.00 2.44
994 1013 1.248785 TGTAGACAGGTGGGAGACGC 61.249 60.000 0.00 0.00 0.00 5.19
1129 1153 2.123251 TCGAGGAGGGAGATGGCC 60.123 66.667 0.00 0.00 0.00 5.36
1337 1364 1.153565 AGGAGGAACAAACCCTAGGGA 59.846 52.381 35.38 0.00 38.96 4.20
1469 1499 3.146066 GCTCTGACATCTACGAGATCCT 58.854 50.000 0.00 0.00 31.32 3.24
1470 1500 2.881513 TGCTCTGACATCTACGAGATCC 59.118 50.000 0.00 0.00 31.32 3.36
1548 1578 0.693049 AGTTAGTCAGGTGGCCCAAG 59.307 55.000 0.00 0.00 0.00 3.61
1665 1700 1.035385 TCCCGTCGATGCTAGCTGAA 61.035 55.000 17.23 0.00 0.00 3.02
1675 1710 0.679002 TCTTCGTCCTTCCCGTCGAT 60.679 55.000 0.00 0.00 32.54 3.59
1682 1717 4.392921 TCATCTTCATCTTCGTCCTTCC 57.607 45.455 0.00 0.00 0.00 3.46
1756 1792 9.190317 AGGAAGAATGTTAAAGTCTCAGTTTTT 57.810 29.630 0.00 0.00 0.00 1.94
1768 1804 4.637276 TGCGTCAGAGGAAGAATGTTAAA 58.363 39.130 0.00 0.00 0.00 1.52
2035 2071 4.040829 TGTTATCCTTCTCATCCGCATGAT 59.959 41.667 0.00 0.00 38.42 2.45
2057 2093 8.571336 GTCATCCTGAATAAATTACCATCCTTG 58.429 37.037 0.00 0.00 0.00 3.61
2086 2122 5.656416 AGCAAGCTAACTAGACAGAGAAGAT 59.344 40.000 0.00 0.00 0.00 2.40
2114 2150 4.062991 AGCAAGAGTTTAGTTTACCCACG 58.937 43.478 0.00 0.00 0.00 4.94
2135 2171 2.159198 AGCTGCAAAACCAAACACAGAG 60.159 45.455 1.02 0.00 0.00 3.35
2139 2175 0.652071 GCAGCTGCAAAACCAAACAC 59.348 50.000 33.36 0.00 41.59 3.32
2195 2233 0.319555 GTGTGCTAGGTGCGAAGTCA 60.320 55.000 0.00 0.00 46.63 3.41
2202 2240 2.250939 TTGTGCGTGTGCTAGGTGC 61.251 57.895 0.00 0.00 43.34 5.01
2347 2385 7.698970 CGAAGAAAGATACAGAAAGACTACTCC 59.301 40.741 0.00 0.00 0.00 3.85
2348 2386 8.238631 ACGAAGAAAGATACAGAAAGACTACTC 58.761 37.037 0.00 0.00 0.00 2.59
2353 2391 9.235537 GGTATACGAAGAAAGATACAGAAAGAC 57.764 37.037 0.00 0.00 0.00 3.01
2511 2549 7.894708 TCTGCAGGAAATAATTGTGAAAATGA 58.105 30.769 15.13 0.00 0.00 2.57
2542 2580 2.247358 TGGCCAAAAATCTGGAGAACC 58.753 47.619 0.61 0.00 38.96 3.62
2558 2597 4.035675 GTGAGCTATCATAACAGTTTGGCC 59.964 45.833 0.00 0.00 37.87 5.36
2561 2600 4.870426 ACGGTGAGCTATCATAACAGTTTG 59.130 41.667 0.00 0.00 37.87 2.93
2579 2618 5.514274 AATTTAGCCATGGATTTACGGTG 57.486 39.130 18.40 0.00 0.00 4.94
2587 2626 9.301897 GTTTCCTCTAATAATTTAGCCATGGAT 57.698 33.333 18.40 13.25 35.72 3.41
2593 2632 7.867909 GCAATGGTTTCCTCTAATAATTTAGCC 59.132 37.037 0.00 0.00 35.72 3.93
2629 2668 2.946762 GCACAGCCGAGTTGGAAC 59.053 61.111 0.00 0.00 42.00 3.62
2658 2697 9.853555 TCAAAATTACACACATATCATGAAACC 57.146 29.630 0.00 0.00 0.00 3.27
2671 2710 5.331902 AGCGCACATATCAAAATTACACAC 58.668 37.500 11.47 0.00 0.00 3.82
2807 2847 6.377146 ACAAAAGCTAAGGTTCAAAAGACTGA 59.623 34.615 0.00 0.00 0.00 3.41
2810 2850 5.232202 GCACAAAAGCTAAGGTTCAAAAGAC 59.768 40.000 0.00 0.00 0.00 3.01
2818 2858 4.144297 TGATCAGCACAAAAGCTAAGGTT 58.856 39.130 0.00 0.00 44.54 3.50
2826 2866 6.252869 GCAAGTTCATATGATCAGCACAAAAG 59.747 38.462 18.62 4.76 0.00 2.27
2869 2910 3.786048 GCATCGATTAAAGCCAGAAAACG 59.214 43.478 0.00 0.00 0.00 3.60
2912 2953 5.525378 GCTCATTAGCTACAGTGCAATAAGT 59.475 40.000 11.64 0.00 45.85 2.24
2914 2955 5.991328 GCTCATTAGCTACAGTGCAATAA 57.009 39.130 11.64 0.00 45.85 1.40
2943 2984 4.365514 TTGTATCTTGGAGGCACAGAAA 57.634 40.909 0.00 0.00 0.00 2.52
3002 3043 4.675063 AATTGGGATAAGGGAACTGTGT 57.325 40.909 0.00 0.00 42.68 3.72
3030 3071 7.479352 ACATCATGATTTAAATGGTGGAACA 57.521 32.000 5.16 0.00 39.92 3.18
3034 3075 8.415553 ACACATACATCATGATTTAAATGGTGG 58.584 33.333 5.16 4.95 39.92 4.61
3105 3148 6.857777 ATTATGCATTCTGCTCTGTAGTTC 57.142 37.500 3.54 0.00 45.31 3.01
3107 3150 6.018425 CGAAATTATGCATTCTGCTCTGTAGT 60.018 38.462 3.54 0.00 45.31 2.73
3108 3151 6.018425 ACGAAATTATGCATTCTGCTCTGTAG 60.018 38.462 3.54 0.00 45.31 2.74
3109 3152 5.817296 ACGAAATTATGCATTCTGCTCTGTA 59.183 36.000 3.54 0.00 45.31 2.74
3131 3174 3.459232 TCATGAATTCTGCTCCCTACG 57.541 47.619 7.05 0.00 0.00 3.51
3190 3233 6.422776 AGTATAAGCTTCAACAATGAACCG 57.577 37.500 0.00 0.00 40.59 4.44
3273 3316 1.321474 CAGAGGCCTTGCAAGTTCAA 58.679 50.000 24.35 0.00 0.00 2.69
3287 3330 2.551459 CCAGAAAACAGAAGTGCAGAGG 59.449 50.000 0.00 0.00 0.00 3.69
3293 3336 6.738114 TCAATAAAGCCAGAAAACAGAAGTG 58.262 36.000 0.00 0.00 0.00 3.16
3338 3381 1.999648 ACATGACAACAGGCCAACAT 58.000 45.000 5.01 0.00 0.00 2.71
3360 3403 1.825474 TGTGCCTCCTTAGCTACAGTC 59.175 52.381 0.00 0.00 0.00 3.51
3361 3404 1.938585 TGTGCCTCCTTAGCTACAGT 58.061 50.000 0.00 0.00 0.00 3.55
3511 3554 2.743938 CTATGCACTACACACGATCCC 58.256 52.381 0.00 0.00 0.00 3.85
3526 3569 4.615588 AGATGGAAGTAAGGAGCTATGC 57.384 45.455 0.00 0.00 0.00 3.14
3535 3578 8.514594 TGAAAAGCAACATAAGATGGAAGTAAG 58.485 33.333 0.00 0.00 33.60 2.34
3537 3580 7.994425 TGAAAAGCAACATAAGATGGAAGTA 57.006 32.000 0.00 0.00 33.60 2.24
3538 3581 6.899393 TGAAAAGCAACATAAGATGGAAGT 57.101 33.333 0.00 0.00 33.60 3.01
3545 3588 7.648908 CAGTTCAACATGAAAAGCAACATAAGA 59.351 33.333 0.00 0.00 38.22 2.10
3555 3598 4.037208 AGGTCTGCAGTTCAACATGAAAAG 59.963 41.667 14.67 0.00 38.22 2.27
3558 3601 3.213206 AGGTCTGCAGTTCAACATGAA 57.787 42.857 14.67 0.00 33.32 2.57
3559 3602 2.936919 AGGTCTGCAGTTCAACATGA 57.063 45.000 14.67 0.00 0.00 3.07
3591 3634 1.882352 GCGGATGTCTTTGGTCTTGGT 60.882 52.381 0.00 0.00 0.00 3.67
3678 3721 2.283894 TCCTGCTCCTTCCGCTCA 60.284 61.111 0.00 0.00 0.00 4.26
3769 3812 1.739562 CAGTTCTCGGACAGCCAGC 60.740 63.158 0.00 0.00 0.00 4.85
3857 3902 2.609747 ACAGAGGTTTGACTGGAGCTA 58.390 47.619 0.00 0.00 38.30 3.32
3858 3903 1.428869 ACAGAGGTTTGACTGGAGCT 58.571 50.000 0.00 0.00 38.30 4.09
3864 3909 2.690840 ACCCAGTACAGAGGTTTGACT 58.309 47.619 0.00 0.00 0.00 3.41
3939 3984 3.348236 GATGCCATCATCGCCACC 58.652 61.111 0.00 0.00 39.63 4.61
3996 4041 4.223700 TCTGCACCTCTGACATTACAATCT 59.776 41.667 0.00 0.00 0.00 2.40
4027 4072 2.534042 TTTCTTTCCCACACCAACCA 57.466 45.000 0.00 0.00 0.00 3.67
4030 4075 6.157123 AGGTTTATTTTTCTTTCCCACACCAA 59.843 34.615 0.00 0.00 0.00 3.67
4065 4110 9.899661 ACATAGCACTTACATTAATTTCTGGTA 57.100 29.630 0.00 0.00 0.00 3.25
4105 4150 2.362077 TGCCAAAAAGTTCCTTGAGCTC 59.638 45.455 6.82 6.82 0.00 4.09
4106 4151 2.101415 GTGCCAAAAAGTTCCTTGAGCT 59.899 45.455 0.00 0.00 0.00 4.09
4107 4152 2.473816 GTGCCAAAAAGTTCCTTGAGC 58.526 47.619 0.35 3.14 0.00 4.26
4108 4153 2.731217 CGTGCCAAAAAGTTCCTTGAG 58.269 47.619 0.35 0.00 0.00 3.02
4109 4154 1.202359 GCGTGCCAAAAAGTTCCTTGA 60.202 47.619 0.35 0.00 0.00 3.02
4110 4155 1.208259 GCGTGCCAAAAAGTTCCTTG 58.792 50.000 0.00 0.00 0.00 3.61
4111 4156 0.104120 GGCGTGCCAAAAAGTTCCTT 59.896 50.000 5.89 0.00 35.81 3.36
4112 4157 1.739667 GGCGTGCCAAAAAGTTCCT 59.260 52.632 5.89 0.00 35.81 3.36
4113 4158 1.660264 CGGCGTGCCAAAAAGTTCC 60.660 57.895 12.06 0.00 35.37 3.62
4114 4159 2.300066 GCGGCGTGCCAAAAAGTTC 61.300 57.895 12.06 0.00 37.76 3.01
4115 4160 2.279186 GCGGCGTGCCAAAAAGTT 60.279 55.556 12.06 0.00 37.76 2.66
4132 4177 2.436646 ATGTTGCTCCTTCGGCGG 60.437 61.111 7.21 0.00 0.00 6.13
4133 4178 1.970917 GACATGTTGCTCCTTCGGCG 61.971 60.000 0.00 0.00 0.00 6.46
4134 4179 0.955428 TGACATGTTGCTCCTTCGGC 60.955 55.000 0.00 0.00 0.00 5.54
4135 4180 1.466167 CTTGACATGTTGCTCCTTCGG 59.534 52.381 0.00 0.00 0.00 4.30
4136 4181 1.466167 CCTTGACATGTTGCTCCTTCG 59.534 52.381 0.00 0.00 0.00 3.79
4137 4182 2.508526 ACCTTGACATGTTGCTCCTTC 58.491 47.619 0.00 0.00 0.00 3.46
4138 4183 2.664402 ACCTTGACATGTTGCTCCTT 57.336 45.000 0.00 0.00 0.00 3.36
4139 4184 2.624838 CAAACCTTGACATGTTGCTCCT 59.375 45.455 0.00 0.00 0.00 3.69
4140 4185 2.362077 ACAAACCTTGACATGTTGCTCC 59.638 45.455 0.00 0.00 0.00 4.70
4141 4186 3.316308 AGACAAACCTTGACATGTTGCTC 59.684 43.478 0.00 0.00 0.00 4.26
4142 4187 3.290710 AGACAAACCTTGACATGTTGCT 58.709 40.909 0.00 0.00 0.00 3.91
4143 4188 3.632189 GAGACAAACCTTGACATGTTGC 58.368 45.455 0.00 0.00 0.00 4.17
4144 4189 3.312421 ACGAGACAAACCTTGACATGTTG 59.688 43.478 0.00 0.00 0.00 3.33
4145 4190 3.541632 ACGAGACAAACCTTGACATGTT 58.458 40.909 0.00 0.00 0.00 2.71
4146 4191 3.194005 ACGAGACAAACCTTGACATGT 57.806 42.857 0.00 0.00 0.00 3.21
4147 4192 3.849645 GCAACGAGACAAACCTTGACATG 60.850 47.826 0.00 0.00 0.00 3.21
4148 4193 2.290641 GCAACGAGACAAACCTTGACAT 59.709 45.455 0.00 0.00 0.00 3.06
4149 4194 1.668751 GCAACGAGACAAACCTTGACA 59.331 47.619 0.00 0.00 0.00 3.58
4150 4195 1.940613 AGCAACGAGACAAACCTTGAC 59.059 47.619 0.00 0.00 0.00 3.18
4151 4196 2.210116 GAGCAACGAGACAAACCTTGA 58.790 47.619 0.00 0.00 0.00 3.02
4152 4197 1.070577 CGAGCAACGAGACAAACCTTG 60.071 52.381 0.00 0.00 45.77 3.61
4153 4198 1.217882 CGAGCAACGAGACAAACCTT 58.782 50.000 0.00 0.00 45.77 3.50
4154 4199 0.600255 CCGAGCAACGAGACAAACCT 60.600 55.000 4.96 0.00 45.77 3.50
4155 4200 1.860078 CCGAGCAACGAGACAAACC 59.140 57.895 4.96 0.00 45.77 3.27
4156 4201 1.204312 GCCGAGCAACGAGACAAAC 59.796 57.895 4.96 0.00 45.77 2.93
4157 4202 0.812014 TTGCCGAGCAACGAGACAAA 60.812 50.000 7.15 0.00 43.99 2.83
4158 4203 1.221466 CTTGCCGAGCAACGAGACAA 61.221 55.000 7.15 5.82 43.99 3.18
4159 4204 1.664649 CTTGCCGAGCAACGAGACA 60.665 57.895 7.15 0.00 43.99 3.41
4160 4205 1.618640 GACTTGCCGAGCAACGAGAC 61.619 60.000 7.15 0.00 43.99 3.36
4161 4206 1.372997 GACTTGCCGAGCAACGAGA 60.373 57.895 7.15 0.00 43.99 4.04
4162 4207 2.383527 GGACTTGCCGAGCAACGAG 61.384 63.158 7.15 1.85 43.99 4.18
4163 4208 2.357034 GGACTTGCCGAGCAACGA 60.357 61.111 7.15 0.00 43.99 3.85
4164 4209 1.961277 AAGGACTTGCCGAGCAACG 60.961 57.895 7.15 6.80 43.99 4.10
4165 4210 1.576421 CAAGGACTTGCCGAGCAAC 59.424 57.895 7.15 0.29 43.99 4.17
4166 4211 4.063529 CAAGGACTTGCCGAGCAA 57.936 55.556 10.28 10.28 46.80 3.91
4192 4237 2.725203 TTTGTCTCGGCCAACCCTCG 62.725 60.000 2.24 0.00 0.00 4.63
4193 4238 0.322546 ATTTGTCTCGGCCAACCCTC 60.323 55.000 2.24 0.00 0.00 4.30
4194 4239 0.988832 TATTTGTCTCGGCCAACCCT 59.011 50.000 2.24 0.00 0.00 4.34
4195 4240 1.676006 CATATTTGTCTCGGCCAACCC 59.324 52.381 2.24 0.00 0.00 4.11
4196 4241 1.676006 CCATATTTGTCTCGGCCAACC 59.324 52.381 2.24 0.00 0.00 3.77
4197 4242 2.614057 CTCCATATTTGTCTCGGCCAAC 59.386 50.000 2.24 0.00 0.00 3.77
4198 4243 2.421388 CCTCCATATTTGTCTCGGCCAA 60.421 50.000 2.24 0.00 0.00 4.52
4199 4244 1.140852 CCTCCATATTTGTCTCGGCCA 59.859 52.381 2.24 0.00 0.00 5.36
4200 4245 1.141053 ACCTCCATATTTGTCTCGGCC 59.859 52.381 0.00 0.00 0.00 6.13
4201 4246 2.158957 TGACCTCCATATTTGTCTCGGC 60.159 50.000 0.00 0.00 0.00 5.54
4202 4247 3.722147 CTGACCTCCATATTTGTCTCGG 58.278 50.000 0.00 0.00 0.00 4.63
4203 4248 3.126831 GCTGACCTCCATATTTGTCTCG 58.873 50.000 0.00 0.00 0.00 4.04
4204 4249 4.142609 TGCTGACCTCCATATTTGTCTC 57.857 45.455 0.00 0.00 0.00 3.36
4205 4250 4.164796 TCATGCTGACCTCCATATTTGTCT 59.835 41.667 0.00 0.00 0.00 3.41
4206 4251 4.454678 TCATGCTGACCTCCATATTTGTC 58.545 43.478 0.00 0.00 0.00 3.18
4207 4252 4.458397 CTCATGCTGACCTCCATATTTGT 58.542 43.478 0.00 0.00 0.00 2.83
4208 4253 3.819337 CCTCATGCTGACCTCCATATTTG 59.181 47.826 0.00 0.00 0.00 2.32
4209 4254 3.461085 ACCTCATGCTGACCTCCATATTT 59.539 43.478 0.00 0.00 0.00 1.40
4210 4255 3.051581 ACCTCATGCTGACCTCCATATT 58.948 45.455 0.00 0.00 0.00 1.28
4211 4256 2.371179 CACCTCATGCTGACCTCCATAT 59.629 50.000 0.00 0.00 0.00 1.78
4212 4257 1.764723 CACCTCATGCTGACCTCCATA 59.235 52.381 0.00 0.00 0.00 2.74
4213 4258 0.545171 CACCTCATGCTGACCTCCAT 59.455 55.000 0.00 0.00 0.00 3.41
4214 4259 0.545071 TCACCTCATGCTGACCTCCA 60.545 55.000 0.00 0.00 0.00 3.86
4215 4260 0.177604 CTCACCTCATGCTGACCTCC 59.822 60.000 0.00 0.00 0.00 4.30
4216 4261 1.134848 GTCTCACCTCATGCTGACCTC 60.135 57.143 0.00 0.00 0.00 3.85
4217 4262 0.901124 GTCTCACCTCATGCTGACCT 59.099 55.000 0.00 0.00 0.00 3.85
4218 4263 0.107945 GGTCTCACCTCATGCTGACC 60.108 60.000 0.00 0.00 41.28 4.02
4219 4264 0.610174 TGGTCTCACCTCATGCTGAC 59.390 55.000 0.00 0.00 39.58 3.51
4220 4265 1.576577 ATGGTCTCACCTCATGCTGA 58.423 50.000 0.00 0.00 39.58 4.26
4221 4266 2.014857 CAATGGTCTCACCTCATGCTG 58.985 52.381 0.00 0.00 39.58 4.41
4222 4267 1.632409 ACAATGGTCTCACCTCATGCT 59.368 47.619 0.00 0.00 39.58 3.79
4223 4268 2.119801 ACAATGGTCTCACCTCATGC 57.880 50.000 0.00 0.00 39.58 4.06
4224 4269 3.415212 ACAACAATGGTCTCACCTCATG 58.585 45.455 0.00 0.00 39.58 3.07
4225 4270 3.072915 TGACAACAATGGTCTCACCTCAT 59.927 43.478 0.00 0.00 39.58 2.90
4226 4271 2.437651 TGACAACAATGGTCTCACCTCA 59.562 45.455 0.00 0.00 39.58 3.86
4227 4272 3.070018 CTGACAACAATGGTCTCACCTC 58.930 50.000 0.00 0.00 39.58 3.85
4228 4273 2.224621 CCTGACAACAATGGTCTCACCT 60.225 50.000 0.00 0.00 39.58 4.00
4229 4274 2.154462 CCTGACAACAATGGTCTCACC 58.846 52.381 0.00 0.00 39.22 4.02
4230 4275 2.549754 CACCTGACAACAATGGTCTCAC 59.450 50.000 0.00 0.00 36.26 3.51
4231 4276 2.487086 CCACCTGACAACAATGGTCTCA 60.487 50.000 0.00 0.00 36.26 3.27
4232 4277 2.154462 CCACCTGACAACAATGGTCTC 58.846 52.381 0.00 0.00 36.26 3.36
4233 4278 1.494721 ACCACCTGACAACAATGGTCT 59.505 47.619 0.00 0.00 39.75 3.85
4234 4279 1.880027 GACCACCTGACAACAATGGTC 59.120 52.381 5.99 5.99 45.96 4.02
4235 4280 1.478654 GGACCACCTGACAACAATGGT 60.479 52.381 0.00 0.00 43.70 3.55
4236 4281 1.247567 GGACCACCTGACAACAATGG 58.752 55.000 0.00 0.00 37.95 3.16
4237 4282 0.874390 CGGACCACCTGACAACAATG 59.126 55.000 0.00 0.00 0.00 2.82
4238 4283 0.472471 ACGGACCACCTGACAACAAT 59.528 50.000 0.00 0.00 0.00 2.71
4239 4284 0.462937 CACGGACCACCTGACAACAA 60.463 55.000 0.00 0.00 0.00 2.83
4240 4285 1.145156 CACGGACCACCTGACAACA 59.855 57.895 0.00 0.00 0.00 3.33
4241 4286 0.878961 GACACGGACCACCTGACAAC 60.879 60.000 0.00 0.00 0.00 3.32
4242 4287 1.444250 GACACGGACCACCTGACAA 59.556 57.895 0.00 0.00 0.00 3.18
4243 4288 2.504274 GGACACGGACCACCTGACA 61.504 63.158 0.00 0.00 0.00 3.58
4244 4289 0.896940 TAGGACACGGACCACCTGAC 60.897 60.000 0.00 0.00 34.42 3.51
4245 4290 0.896940 GTAGGACACGGACCACCTGA 60.897 60.000 0.00 0.00 34.42 3.86
4246 4291 1.590147 GTAGGACACGGACCACCTG 59.410 63.158 0.00 0.00 34.42 4.00
4247 4292 1.608627 GGTAGGACACGGACCACCT 60.609 63.158 0.00 0.00 36.65 4.00
4248 4293 1.608627 AGGTAGGACACGGACCACC 60.609 63.158 0.00 0.00 35.56 4.61
4249 4294 1.183676 ACAGGTAGGACACGGACCAC 61.184 60.000 0.00 0.00 35.56 4.16
4250 4295 1.154454 ACAGGTAGGACACGGACCA 59.846 57.895 0.00 0.00 35.56 4.02
4251 4296 1.183676 ACACAGGTAGGACACGGACC 61.184 60.000 0.00 0.00 0.00 4.46
4252 4297 0.038526 CACACAGGTAGGACACGGAC 60.039 60.000 0.00 0.00 0.00 4.79
4253 4298 0.468585 ACACACAGGTAGGACACGGA 60.469 55.000 0.00 0.00 0.00 4.69
4254 4299 1.250328 TACACACAGGTAGGACACGG 58.750 55.000 0.00 0.00 0.00 4.94
4255 4300 2.416836 CCATACACACAGGTAGGACACG 60.417 54.545 0.00 0.00 0.00 4.49
4256 4301 2.829720 TCCATACACACAGGTAGGACAC 59.170 50.000 0.00 0.00 0.00 3.67
4257 4302 3.178412 TCCATACACACAGGTAGGACA 57.822 47.619 0.00 0.00 0.00 4.02
4258 4303 3.369157 GGTTCCATACACACAGGTAGGAC 60.369 52.174 0.00 0.00 0.00 3.85
4259 4304 2.835764 GGTTCCATACACACAGGTAGGA 59.164 50.000 0.00 0.00 0.00 2.94
4260 4305 2.569853 TGGTTCCATACACACAGGTAGG 59.430 50.000 0.00 0.00 0.00 3.18
4261 4306 3.007506 TGTGGTTCCATACACACAGGTAG 59.992 47.826 0.00 0.00 42.20 3.18
4262 4307 2.973406 TGTGGTTCCATACACACAGGTA 59.027 45.455 0.00 0.00 42.20 3.08
4263 4308 1.771854 TGTGGTTCCATACACACAGGT 59.228 47.619 0.00 0.00 42.20 4.00
4264 4309 2.552315 GTTGTGGTTCCATACACACAGG 59.448 50.000 0.00 0.00 46.25 4.00
4265 4310 2.552315 GGTTGTGGTTCCATACACACAG 59.448 50.000 0.00 0.00 46.25 3.66
4266 4311 2.577700 GGTTGTGGTTCCATACACACA 58.422 47.619 0.00 0.00 46.25 3.72
4267 4312 1.883926 GGGTTGTGGTTCCATACACAC 59.116 52.381 0.00 0.00 46.25 3.82
4268 4313 1.543650 CGGGTTGTGGTTCCATACACA 60.544 52.381 0.00 0.00 45.06 3.72
4269 4314 1.161843 CGGGTTGTGGTTCCATACAC 58.838 55.000 0.00 0.00 38.08 2.90
4270 4315 0.037017 CCGGGTTGTGGTTCCATACA 59.963 55.000 0.00 0.00 0.00 2.29
4271 4316 0.325602 TCCGGGTTGTGGTTCCATAC 59.674 55.000 0.00 0.00 0.00 2.39
4272 4317 0.616371 CTCCGGGTTGTGGTTCCATA 59.384 55.000 0.00 0.00 0.00 2.74
4273 4318 1.378762 CTCCGGGTTGTGGTTCCAT 59.621 57.895 0.00 0.00 0.00 3.41
4274 4319 2.824880 CCTCCGGGTTGTGGTTCCA 61.825 63.158 0.00 0.00 0.00 3.53
4275 4320 2.033602 CCTCCGGGTTGTGGTTCC 59.966 66.667 0.00 0.00 0.00 3.62
4276 4321 2.033602 CCCTCCGGGTTGTGGTTC 59.966 66.667 0.00 0.00 38.25 3.62
4277 4322 3.576259 CCCCTCCGGGTTGTGGTT 61.576 66.667 0.00 0.00 45.50 3.67
4286 4331 2.676471 CCAAAACAGCCCCTCCGG 60.676 66.667 0.00 0.00 0.00 5.14
4287 4332 0.611896 ATTCCAAAACAGCCCCTCCG 60.612 55.000 0.00 0.00 0.00 4.63
4288 4333 0.897621 CATTCCAAAACAGCCCCTCC 59.102 55.000 0.00 0.00 0.00 4.30
4289 4334 1.632589 ACATTCCAAAACAGCCCCTC 58.367 50.000 0.00 0.00 0.00 4.30
4290 4335 1.970640 GAACATTCCAAAACAGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
4291 4336 1.691434 TGAACATTCCAAAACAGCCCC 59.309 47.619 0.00 0.00 0.00 5.80
4292 4337 2.289010 CCTGAACATTCCAAAACAGCCC 60.289 50.000 0.00 0.00 0.00 5.19
4293 4338 2.289010 CCCTGAACATTCCAAAACAGCC 60.289 50.000 0.00 0.00 0.00 4.85
4294 4339 2.365293 ACCCTGAACATTCCAAAACAGC 59.635 45.455 0.00 0.00 0.00 4.40
4295 4340 3.891366 AGACCCTGAACATTCCAAAACAG 59.109 43.478 0.00 0.00 0.00 3.16
4296 4341 3.636300 CAGACCCTGAACATTCCAAAACA 59.364 43.478 0.00 0.00 32.44 2.83
4297 4342 3.888930 TCAGACCCTGAACATTCCAAAAC 59.111 43.478 0.00 0.00 37.57 2.43
4298 4343 4.177537 TCAGACCCTGAACATTCCAAAA 57.822 40.909 0.00 0.00 37.57 2.44
4299 4344 3.874383 TCAGACCCTGAACATTCCAAA 57.126 42.857 0.00 0.00 37.57 3.28
4300 4345 3.874383 TTCAGACCCTGAACATTCCAA 57.126 42.857 5.38 0.00 44.27 3.53
4309 4354 3.387962 AGCTGGATTATTCAGACCCTGA 58.612 45.455 4.39 0.00 38.87 3.86
4310 4355 3.853355 AGCTGGATTATTCAGACCCTG 57.147 47.619 4.39 0.00 34.36 4.45
4311 4356 5.398012 GGTTTAGCTGGATTATTCAGACCCT 60.398 44.000 4.39 0.00 34.36 4.34
4312 4357 4.822350 GGTTTAGCTGGATTATTCAGACCC 59.178 45.833 4.39 0.00 34.36 4.46
4313 4358 5.685728 AGGTTTAGCTGGATTATTCAGACC 58.314 41.667 4.39 2.97 34.36 3.85
4314 4359 8.204836 TCTTAGGTTTAGCTGGATTATTCAGAC 58.795 37.037 4.39 0.00 34.36 3.51
4315 4360 8.319057 TCTTAGGTTTAGCTGGATTATTCAGA 57.681 34.615 4.39 0.00 34.36 3.27
4316 4361 7.172361 GCTCTTAGGTTTAGCTGGATTATTCAG 59.828 40.741 0.00 0.00 33.40 3.02
4317 4362 6.992715 GCTCTTAGGTTTAGCTGGATTATTCA 59.007 38.462 0.00 0.00 33.40 2.57
4318 4363 6.992715 TGCTCTTAGGTTTAGCTGGATTATTC 59.007 38.462 0.00 0.00 37.16 1.75
4319 4364 6.900194 TGCTCTTAGGTTTAGCTGGATTATT 58.100 36.000 0.00 0.00 37.16 1.40
4320 4365 6.500589 TGCTCTTAGGTTTAGCTGGATTAT 57.499 37.500 0.00 0.00 37.16 1.28
4321 4366 5.685075 GCTGCTCTTAGGTTTAGCTGGATTA 60.685 44.000 0.00 0.00 37.16 1.75
4322 4367 4.775236 CTGCTCTTAGGTTTAGCTGGATT 58.225 43.478 0.00 0.00 37.16 3.01
4323 4368 3.432890 GCTGCTCTTAGGTTTAGCTGGAT 60.433 47.826 0.00 0.00 37.16 3.41
4324 4369 2.093447 GCTGCTCTTAGGTTTAGCTGGA 60.093 50.000 0.00 0.00 37.16 3.86
4325 4370 2.284190 GCTGCTCTTAGGTTTAGCTGG 58.716 52.381 0.00 0.00 37.16 4.85
4326 4371 2.284190 GGCTGCTCTTAGGTTTAGCTG 58.716 52.381 0.00 0.00 37.16 4.24
4327 4372 1.134670 CGGCTGCTCTTAGGTTTAGCT 60.135 52.381 0.00 0.00 37.16 3.32
4328 4373 1.291132 CGGCTGCTCTTAGGTTTAGC 58.709 55.000 0.00 0.00 36.77 3.09
4329 4374 2.673368 CAACGGCTGCTCTTAGGTTTAG 59.327 50.000 0.00 0.00 0.00 1.85
4330 4375 2.614481 CCAACGGCTGCTCTTAGGTTTA 60.614 50.000 0.00 0.00 0.00 2.01
4331 4376 1.523758 CAACGGCTGCTCTTAGGTTT 58.476 50.000 0.00 0.00 0.00 3.27
4332 4377 0.321653 CCAACGGCTGCTCTTAGGTT 60.322 55.000 0.00 0.00 0.00 3.50
4333 4378 1.296715 CCAACGGCTGCTCTTAGGT 59.703 57.895 0.00 0.00 0.00 3.08
4334 4379 2.109126 GCCAACGGCTGCTCTTAGG 61.109 63.158 0.00 0.00 46.69 2.69
4335 4380 3.490890 GCCAACGGCTGCTCTTAG 58.509 61.111 0.00 0.00 46.69 2.18
4473 4552 4.213564 TGTCCAATTTGCCAAACTTTGT 57.786 36.364 0.00 0.00 0.00 2.83
4533 4613 7.485418 ACTTATGTAAACGTCAAACATGTCA 57.515 32.000 16.35 0.00 35.54 3.58
4568 4665 2.619147 GACTTCTTCGCCCCTTAGTTC 58.381 52.381 0.00 0.00 0.00 3.01
4645 4778 4.938756 AGGGGTCCAACAGGGGCA 62.939 66.667 0.00 0.00 45.89 5.36
4790 4933 1.525077 GGCACACACGGAGTTGGAA 60.525 57.895 0.00 0.00 41.61 3.53
4809 4952 0.036765 AATTGGGCGCGTGAAGACTA 60.037 50.000 8.43 0.00 0.00 2.59
4884 5033 3.692406 GCTCCCCGTCGTGAAGGT 61.692 66.667 1.24 0.00 0.00 3.50
4885 5034 4.452733 GGCTCCCCGTCGTGAAGG 62.453 72.222 0.00 0.00 0.00 3.46
4982 5145 2.106074 GCCGGCATCGTCATCAACA 61.106 57.895 24.80 0.00 33.95 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.