Multiple sequence alignment - TraesCS3A01G513600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G513600 chr3A 100.000 3830 0 0 900 4729 732697921 732701750 0.000000e+00 7073.0
1 TraesCS3A01G513600 chr3A 88.004 892 59 19 1082 1953 732736897 732737760 0.000000e+00 1011.0
2 TraesCS3A01G513600 chr3A 83.068 1193 101 43 1082 2254 732727961 732729072 0.000000e+00 990.0
3 TraesCS3A01G513600 chr3A 100.000 532 0 0 1 532 732697022 732697553 0.000000e+00 983.0
4 TraesCS3A01G513600 chr3A 94.485 544 26 4 2777 3318 732729562 732730103 0.000000e+00 835.0
5 TraesCS3A01G513600 chr3A 88.280 657 69 6 3308 3963 732739092 732739741 0.000000e+00 780.0
6 TraesCS3A01G513600 chr3A 86.345 725 66 13 4007 4708 732739743 732740457 0.000000e+00 760.0
7 TraesCS3A01G513600 chr3D 95.646 2044 63 9 2707 4728 603408575 603406536 0.000000e+00 3258.0
8 TraesCS3A01G513600 chr3D 93.757 945 40 3 2633 3558 603374530 603373586 0.000000e+00 1400.0
9 TraesCS3A01G513600 chr3D 88.536 1134 91 18 1180 2299 603375968 603374860 0.000000e+00 1338.0
10 TraesCS3A01G513600 chr3D 94.498 727 25 9 918 1641 603409945 603409231 0.000000e+00 1107.0
11 TraesCS3A01G513600 chr3D 89.301 701 59 11 3264 3963 603372335 603371650 0.000000e+00 865.0
12 TraesCS3A01G513600 chr3D 88.198 627 50 13 1626 2242 603409215 603408603 0.000000e+00 726.0
13 TraesCS3A01G513600 chr3D 89.320 515 43 8 1 508 603410684 603410175 1.860000e-178 636.0
14 TraesCS3A01G513600 chr3D 88.621 457 42 5 4007 4458 603371648 603371197 8.950000e-152 547.0
15 TraesCS3A01G513600 chr3D 94.099 322 18 1 2331 2651 603374862 603374541 5.500000e-134 488.0
16 TraesCS3A01G513600 chr3D 79.751 563 90 13 2887 3444 603353762 603353219 2.060000e-103 387.0
17 TraesCS3A01G513600 chr3D 76.431 297 32 18 1877 2161 603374837 603374567 4.970000e-25 126.0
18 TraesCS3A01G513600 chr3D 74.174 333 66 12 1687 2007 603442384 603442060 2.310000e-23 121.0
19 TraesCS3A01G513600 chr3D 83.582 134 9 4 2887 3019 603393977 603393856 3.870000e-21 113.0
20 TraesCS3A01G513600 chr3D 96.774 31 1 0 4088 4118 603374431 603374461 9.000000e-03 52.8
21 TraesCS3A01G513600 chr3B 92.754 2139 99 12 2287 4380 810334837 810336964 0.000000e+00 3040.0
22 TraesCS3A01G513600 chr3B 93.900 1295 56 7 3277 4551 810378788 810380079 0.000000e+00 1932.0
23 TraesCS3A01G513600 chr3B 87.427 1368 129 20 3341 4682 810522600 810523950 0.000000e+00 1533.0
24 TraesCS3A01G513600 chr3B 83.935 1301 104 48 974 2254 810334043 810335258 0.000000e+00 1147.0
25 TraesCS3A01G513600 chr3B 88.824 689 69 6 3264 3951 810411078 810411759 0.000000e+00 839.0
26 TraesCS3A01G513600 chr3B 86.275 714 69 18 4007 4697 810461742 810462449 0.000000e+00 749.0
27 TraesCS3A01G513600 chr3B 87.062 657 77 6 3308 3963 810461091 810461740 0.000000e+00 736.0
28 TraesCS3A01G513600 chr3B 80.785 968 103 44 1086 2041 810370159 810371055 0.000000e+00 680.0
29 TraesCS3A01G513600 chr3B 83.448 725 67 30 1082 1794 810399365 810400048 4.020000e-175 625.0
30 TraesCS3A01G513600 chr3B 82.991 535 42 19 1 511 810332951 810333460 5.620000e-119 438.0
31 TraesCS3A01G513600 chr3B 79.292 565 89 17 2884 3441 810506503 810507046 2.080000e-98 370.0
32 TraesCS3A01G513600 chr3B 87.633 283 26 5 4007 4286 810411777 810412053 2.120000e-83 320.0
33 TraesCS3A01G513600 chr3B 84.729 203 3 8 4419 4602 810336961 810337154 1.350000e-40 178.0
34 TraesCS3A01G513600 chr3B 95.238 42 2 0 3269 3310 810460828 810460869 3.050000e-07 67.6
35 TraesCS3A01G513600 chr5B 83.158 380 55 7 2278 2651 6864276 6863900 5.860000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G513600 chr3A 732697022 732701750 4728 False 4028.000000 7073 100.00000 1 4729 2 chr3A.!!$F1 4728
1 TraesCS3A01G513600 chr3A 732727961 732730103 2142 False 912.500000 990 88.77650 1082 3318 2 chr3A.!!$F2 2236
2 TraesCS3A01G513600 chr3A 732736897 732740457 3560 False 850.333333 1011 87.54300 1082 4708 3 chr3A.!!$F3 3626
3 TraesCS3A01G513600 chr3D 603406536 603410684 4148 True 1431.750000 3258 91.91550 1 4728 4 chr3D.!!$R5 4727
4 TraesCS3A01G513600 chr3D 603371197 603375968 4771 True 794.000000 1400 88.45750 1180 4458 6 chr3D.!!$R4 3278
5 TraesCS3A01G513600 chr3D 603353219 603353762 543 True 387.000000 387 79.75100 2887 3444 1 chr3D.!!$R1 557
6 TraesCS3A01G513600 chr3B 810378788 810380079 1291 False 1932.000000 1932 93.90000 3277 4551 1 chr3B.!!$F2 1274
7 TraesCS3A01G513600 chr3B 810522600 810523950 1350 False 1533.000000 1533 87.42700 3341 4682 1 chr3B.!!$F5 1341
8 TraesCS3A01G513600 chr3B 810332951 810337154 4203 False 1200.750000 3040 86.10225 1 4602 4 chr3B.!!$F6 4601
9 TraesCS3A01G513600 chr3B 810370159 810371055 896 False 680.000000 680 80.78500 1086 2041 1 chr3B.!!$F1 955
10 TraesCS3A01G513600 chr3B 810399365 810400048 683 False 625.000000 625 83.44800 1082 1794 1 chr3B.!!$F3 712
11 TraesCS3A01G513600 chr3B 810411078 810412053 975 False 579.500000 839 88.22850 3264 4286 2 chr3B.!!$F7 1022
12 TraesCS3A01G513600 chr3B 810460828 810462449 1621 False 517.533333 749 89.52500 3269 4697 3 chr3B.!!$F8 1428
13 TraesCS3A01G513600 chr3B 810506503 810507046 543 False 370.000000 370 79.29200 2884 3441 1 chr3B.!!$F4 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 512 0.250338 CTCCTATTTACGCAGCCCCC 60.250 60.0 0.00 0.0 0.00 5.40 F
2319 3026 0.031857 CACTGCAAATGCGTGGGAAA 59.968 50.0 16.92 0.0 45.83 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2361 3068 0.029300 CGATGATTTCCCGCGCATTT 59.971 50.0 8.75 0.0 0.00 2.32 R
4310 7784 0.108329 GTAGCTTGGCACGGCTTCTA 60.108 55.0 17.28 0.0 40.16 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 48 1.446907 ACGGTCGATCTCACGTAACT 58.553 50.000 0.00 0.00 37.85 2.24
77 83 4.988598 CCTTCACGCCACGGCACT 62.989 66.667 9.11 0.00 42.06 4.40
205 219 2.248135 CGTTACCGTGCTGCAACCA 61.248 57.895 2.77 0.00 0.00 3.67
226 240 4.587189 GCGCGCGGTATCCCTCTT 62.587 66.667 33.06 0.00 0.00 2.85
229 243 3.117372 CGCGGTATCCCTCTTCGT 58.883 61.111 0.00 0.00 0.00 3.85
230 244 1.299165 CGCGGTATCCCTCTTCGTG 60.299 63.158 0.00 0.00 0.00 4.35
231 245 1.591863 GCGGTATCCCTCTTCGTGC 60.592 63.158 0.00 0.00 0.00 5.34
274 289 3.869272 CGCGCTCCAGCATTGGTC 61.869 66.667 5.56 0.00 45.26 4.02
302 318 4.901250 AGGATCAAAACAAAATCACCTGGT 59.099 37.500 0.00 0.00 0.00 4.00
304 320 5.466393 GGATCAAAACAAAATCACCTGGTTG 59.534 40.000 0.00 0.00 0.00 3.77
318 334 1.538512 CTGGTTGGAGAGCACAATGTG 59.461 52.381 9.36 9.36 36.51 3.21
334 352 4.233005 CAATGTGTGTGTGTGTGTGAAAA 58.767 39.130 0.00 0.00 0.00 2.29
482 501 2.864343 CGGGTTTCTCCTATTTACGCAG 59.136 50.000 0.00 0.00 36.25 5.18
487 512 0.250338 CTCCTATTTACGCAGCCCCC 60.250 60.000 0.00 0.00 0.00 5.40
488 513 1.597027 CCTATTTACGCAGCCCCCG 60.597 63.158 0.00 0.00 0.00 5.73
489 514 1.597027 CTATTTACGCAGCCCCCGG 60.597 63.158 0.00 0.00 0.00 5.73
510 535 1.876664 CGAAGGCGAGACAGAGTGA 59.123 57.895 0.00 0.00 40.82 3.41
512 537 1.335964 CGAAGGCGAGACAGAGTGAAA 60.336 52.381 0.00 0.00 40.82 2.69
514 539 2.156343 AGGCGAGACAGAGTGAAAAC 57.844 50.000 0.00 0.00 0.00 2.43
518 543 2.604855 GCGAGACAGAGTGAAAACGAGA 60.605 50.000 0.00 0.00 0.00 4.04
519 544 3.629058 CGAGACAGAGTGAAAACGAGAA 58.371 45.455 0.00 0.00 0.00 2.87
521 546 3.718815 AGACAGAGTGAAAACGAGAACC 58.281 45.455 0.00 0.00 0.00 3.62
522 547 3.132289 AGACAGAGTGAAAACGAGAACCA 59.868 43.478 0.00 0.00 0.00 3.67
523 548 3.458189 ACAGAGTGAAAACGAGAACCAG 58.542 45.455 0.00 0.00 0.00 4.00
524 549 3.132289 ACAGAGTGAAAACGAGAACCAGA 59.868 43.478 0.00 0.00 0.00 3.86
526 551 3.060602 GAGTGAAAACGAGAACCAGAGG 58.939 50.000 0.00 0.00 0.00 3.69
527 552 2.698797 AGTGAAAACGAGAACCAGAGGA 59.301 45.455 0.00 0.00 0.00 3.71
528 553 3.060602 GTGAAAACGAGAACCAGAGGAG 58.939 50.000 0.00 0.00 0.00 3.69
529 554 2.963101 TGAAAACGAGAACCAGAGGAGA 59.037 45.455 0.00 0.00 0.00 3.71
531 556 1.551452 AACGAGAACCAGAGGAGAGG 58.449 55.000 0.00 0.00 0.00 3.69
1070 1216 4.147449 CGTGATGGCCCTCTGCGA 62.147 66.667 15.99 0.00 42.61 5.10
1268 1437 2.499981 CGACTCGATCTCGCCATTG 58.500 57.895 0.00 0.00 39.60 2.82
1322 1499 3.093278 CTCGCCTGCCGTGAATTC 58.907 61.111 0.00 0.00 38.35 2.17
1510 1694 5.722263 TGAATCGCATGGATTTTGTTCATT 58.278 33.333 9.79 0.00 45.33 2.57
1513 1697 4.236147 TCGCATGGATTTTGTTCATTGTG 58.764 39.130 0.00 0.00 0.00 3.33
1717 1950 5.113529 GTGTGTCGATTCGTTGATTGTTTTC 59.886 40.000 5.89 0.00 0.00 2.29
1953 2223 6.818644 AGCACACTATTAGTAGGATTGTGTTG 59.181 38.462 12.85 0.00 40.00 3.33
2013 2283 4.925054 ACTTACATTGATTTGTGCACATGC 59.075 37.500 22.39 13.31 42.50 4.06
2060 2330 5.060506 ACGTCACATGTATTTCCTGTTTGA 58.939 37.500 0.00 0.00 0.00 2.69
2067 2337 6.094603 ACATGTATTTCCTGTTTGAGATCTGC 59.905 38.462 0.00 0.00 0.00 4.26
2091 2361 5.807011 CCTTGCACTTATTGAGCCATAAAAC 59.193 40.000 0.00 0.00 0.00 2.43
2092 2362 5.323371 TGCACTTATTGAGCCATAAAACC 57.677 39.130 0.00 0.00 0.00 3.27
2094 2364 4.402474 GCACTTATTGAGCCATAAAACCCT 59.598 41.667 0.00 0.00 0.00 4.34
2195 2898 6.071984 TGTAGGGGTTGTTGTATGTTGATTT 58.928 36.000 0.00 0.00 0.00 2.17
2214 2917 9.301153 GTTGATTTATGAACTGTTCTGTTTTGT 57.699 29.630 20.18 2.41 0.00 2.83
2215 2918 9.868277 TTGATTTATGAACTGTTCTGTTTTGTT 57.132 25.926 20.18 0.00 0.00 2.83
2216 2919 9.299963 TGATTTATGAACTGTTCTGTTTTGTTG 57.700 29.630 20.18 0.00 0.00 3.33
2217 2920 9.301153 GATTTATGAACTGTTCTGTTTTGTTGT 57.699 29.630 20.18 0.00 0.00 3.32
2219 2922 9.781834 TTTATGAACTGTTCTGTTTTGTTGTAG 57.218 29.630 20.18 0.00 0.00 2.74
2220 2923 6.189677 TGAACTGTTCTGTTTTGTTGTAGG 57.810 37.500 20.18 0.00 0.00 3.18
2226 2933 4.237976 TCTGTTTTGTTGTAGGGGTCAA 57.762 40.909 0.00 0.00 0.00 3.18
2242 2949 4.262506 GGGGTCAATACAGTAGTATCCTGC 60.263 50.000 0.00 0.00 40.00 4.85
2243 2950 4.344102 GGGTCAATACAGTAGTATCCTGCA 59.656 45.833 0.00 0.00 40.00 4.41
2244 2951 5.012148 GGGTCAATACAGTAGTATCCTGCAT 59.988 44.000 0.00 0.00 40.00 3.96
2245 2952 6.210784 GGGTCAATACAGTAGTATCCTGCATA 59.789 42.308 0.00 0.00 40.00 3.14
2246 2953 7.093289 GGGTCAATACAGTAGTATCCTGCATAT 60.093 40.741 0.00 0.00 40.00 1.78
2247 2954 8.967918 GGTCAATACAGTAGTATCCTGCATATA 58.032 37.037 0.00 0.00 40.00 0.86
2252 2959 7.889873 ACAGTAGTATCCTGCATATATCTCC 57.110 40.000 0.00 0.00 33.09 3.71
2253 2960 7.414266 ACAGTAGTATCCTGCATATATCTCCA 58.586 38.462 0.00 0.00 33.09 3.86
2254 2961 7.559533 ACAGTAGTATCCTGCATATATCTCCAG 59.440 40.741 0.00 0.00 33.09 3.86
2255 2962 7.559533 CAGTAGTATCCTGCATATATCTCCAGT 59.440 40.741 0.00 0.00 0.00 4.00
2256 2963 6.788598 AGTATCCTGCATATATCTCCAGTG 57.211 41.667 0.00 0.00 0.00 3.66
2257 2964 6.497640 AGTATCCTGCATATATCTCCAGTGA 58.502 40.000 0.00 3.07 0.00 3.41
2258 2965 6.956435 AGTATCCTGCATATATCTCCAGTGAA 59.044 38.462 0.00 0.00 0.00 3.18
2259 2966 6.887886 ATCCTGCATATATCTCCAGTGAAT 57.112 37.500 0.00 0.00 0.00 2.57
2260 2967 6.692849 TCCTGCATATATCTCCAGTGAATT 57.307 37.500 0.00 0.00 0.00 2.17
2261 2968 6.705302 TCCTGCATATATCTCCAGTGAATTC 58.295 40.000 0.00 0.00 0.00 2.17
2262 2969 6.499699 TCCTGCATATATCTCCAGTGAATTCT 59.500 38.462 7.05 0.00 0.00 2.40
2263 2970 7.675619 TCCTGCATATATCTCCAGTGAATTCTA 59.324 37.037 7.05 0.00 0.00 2.10
2264 2971 7.980662 CCTGCATATATCTCCAGTGAATTCTAG 59.019 40.741 7.05 0.00 0.00 2.43
2265 2972 8.427902 TGCATATATCTCCAGTGAATTCTAGT 57.572 34.615 7.05 0.00 0.00 2.57
2266 2973 8.874156 TGCATATATCTCCAGTGAATTCTAGTT 58.126 33.333 7.05 0.00 0.00 2.24
2267 2974 9.717942 GCATATATCTCCAGTGAATTCTAGTTT 57.282 33.333 7.05 0.00 0.00 2.66
2272 2979 7.411486 TCTCCAGTGAATTCTAGTTTCTAGG 57.589 40.000 7.05 7.95 0.00 3.02
2273 2980 6.954684 TCTCCAGTGAATTCTAGTTTCTAGGT 59.045 38.462 7.05 0.00 0.00 3.08
2274 2981 8.114102 TCTCCAGTGAATTCTAGTTTCTAGGTA 58.886 37.037 7.05 0.00 0.00 3.08
2275 2982 8.660295 TCCAGTGAATTCTAGTTTCTAGGTAA 57.340 34.615 7.05 0.00 0.00 2.85
2276 2983 9.268282 TCCAGTGAATTCTAGTTTCTAGGTAAT 57.732 33.333 7.05 0.00 0.00 1.89
2277 2984 9.319143 CCAGTGAATTCTAGTTTCTAGGTAATG 57.681 37.037 7.05 0.00 0.00 1.90
2286 2993 9.485206 TCTAGTTTCTAGGTAATGAACAAACAC 57.515 33.333 4.32 0.00 0.00 3.32
2287 2994 9.268268 CTAGTTTCTAGGTAATGAACAAACACA 57.732 33.333 0.00 0.00 0.00 3.72
2288 2995 8.154649 AGTTTCTAGGTAATGAACAAACACAG 57.845 34.615 0.00 0.00 0.00 3.66
2289 2996 6.554334 TTCTAGGTAATGAACAAACACAGC 57.446 37.500 0.00 0.00 0.00 4.40
2290 2997 3.896648 AGGTAATGAACAAACACAGCG 57.103 42.857 0.00 0.00 0.00 5.18
2291 2998 3.472652 AGGTAATGAACAAACACAGCGA 58.527 40.909 0.00 0.00 0.00 4.93
2292 2999 3.498397 AGGTAATGAACAAACACAGCGAG 59.502 43.478 0.00 0.00 0.00 5.03
2293 3000 2.405892 AATGAACAAACACAGCGAGC 57.594 45.000 0.00 0.00 0.00 5.03
2294 3001 1.597742 ATGAACAAACACAGCGAGCT 58.402 45.000 0.00 0.00 0.00 4.09
2295 3002 2.232756 TGAACAAACACAGCGAGCTA 57.767 45.000 0.00 0.00 0.00 3.32
2296 3003 2.766313 TGAACAAACACAGCGAGCTAT 58.234 42.857 0.00 0.00 0.00 2.97
2297 3004 2.736721 TGAACAAACACAGCGAGCTATC 59.263 45.455 0.00 0.00 0.00 2.08
2298 3005 2.455674 ACAAACACAGCGAGCTATCA 57.544 45.000 0.00 0.00 0.00 2.15
2299 3006 2.069273 ACAAACACAGCGAGCTATCAC 58.931 47.619 0.00 0.00 0.00 3.06
2300 3007 1.394917 CAAACACAGCGAGCTATCACC 59.605 52.381 0.00 0.00 0.00 4.02
2301 3008 0.608130 AACACAGCGAGCTATCACCA 59.392 50.000 0.00 0.00 0.00 4.17
2302 3009 0.108615 ACACAGCGAGCTATCACCAC 60.109 55.000 0.00 0.00 0.00 4.16
2303 3010 0.174389 CACAGCGAGCTATCACCACT 59.826 55.000 0.00 0.00 0.00 4.00
2304 3011 0.174389 ACAGCGAGCTATCACCACTG 59.826 55.000 0.00 0.00 0.00 3.66
2305 3012 1.142748 AGCGAGCTATCACCACTGC 59.857 57.895 0.00 0.00 0.00 4.40
2306 3013 1.153568 GCGAGCTATCACCACTGCA 60.154 57.895 0.00 0.00 0.00 4.41
2307 3014 0.740868 GCGAGCTATCACCACTGCAA 60.741 55.000 0.00 0.00 0.00 4.08
2308 3015 1.725641 CGAGCTATCACCACTGCAAA 58.274 50.000 0.00 0.00 0.00 3.68
2309 3016 2.283298 CGAGCTATCACCACTGCAAAT 58.717 47.619 0.00 0.00 0.00 2.32
2310 3017 2.031314 CGAGCTATCACCACTGCAAATG 59.969 50.000 0.00 0.00 0.00 2.32
2311 3018 1.747355 AGCTATCACCACTGCAAATGC 59.253 47.619 0.00 0.00 42.50 3.56
2312 3019 1.532505 GCTATCACCACTGCAAATGCG 60.533 52.381 0.35 0.00 45.83 4.73
2313 3020 1.739466 CTATCACCACTGCAAATGCGT 59.261 47.619 0.35 0.00 45.83 5.24
2314 3021 0.241749 ATCACCACTGCAAATGCGTG 59.758 50.000 17.43 17.43 45.83 5.34
2317 3024 3.353600 CACTGCAAATGCGTGGGA 58.646 55.556 16.92 0.00 45.83 4.37
2318 3025 1.659233 CACTGCAAATGCGTGGGAA 59.341 52.632 16.92 0.00 45.83 3.97
2319 3026 0.031857 CACTGCAAATGCGTGGGAAA 59.968 50.000 16.92 0.00 45.83 3.13
2320 3027 0.314935 ACTGCAAATGCGTGGGAAAG 59.685 50.000 0.35 0.00 45.83 2.62
2321 3028 1.006337 TGCAAATGCGTGGGAAAGC 60.006 52.632 0.35 0.00 45.83 3.51
2322 3029 1.290009 GCAAATGCGTGGGAAAGCT 59.710 52.632 0.00 0.00 0.00 3.74
2323 3030 0.525761 GCAAATGCGTGGGAAAGCTA 59.474 50.000 0.00 0.00 0.00 3.32
2324 3031 1.134946 GCAAATGCGTGGGAAAGCTAT 59.865 47.619 0.00 0.00 0.00 2.97
2325 3032 2.417243 GCAAATGCGTGGGAAAGCTATT 60.417 45.455 0.00 0.00 0.00 1.73
2326 3033 3.181397 CAAATGCGTGGGAAAGCTATTG 58.819 45.455 0.00 0.00 0.00 1.90
2327 3034 0.740737 ATGCGTGGGAAAGCTATTGC 59.259 50.000 0.00 0.00 40.05 3.56
2328 3035 1.312371 TGCGTGGGAAAGCTATTGCC 61.312 55.000 10.73 10.73 40.80 4.52
2329 3036 1.032114 GCGTGGGAAAGCTATTGCCT 61.032 55.000 16.08 0.00 40.80 4.75
2330 3037 1.463674 CGTGGGAAAGCTATTGCCTT 58.536 50.000 16.08 0.00 40.80 4.35
2331 3038 1.401905 CGTGGGAAAGCTATTGCCTTC 59.598 52.381 16.08 2.30 38.53 3.46
2332 3039 2.446435 GTGGGAAAGCTATTGCCTTCA 58.554 47.619 11.69 0.00 40.41 3.02
2333 3040 2.424956 GTGGGAAAGCTATTGCCTTCAG 59.575 50.000 11.69 0.00 40.41 3.02
2334 3041 2.308570 TGGGAAAGCTATTGCCTTCAGA 59.691 45.455 11.69 0.00 40.41 3.27
2335 3042 3.245229 TGGGAAAGCTATTGCCTTCAGAA 60.245 43.478 11.69 0.00 40.41 3.02
2336 3043 3.956848 GGGAAAGCTATTGCCTTCAGAAT 59.043 43.478 11.69 0.00 40.41 2.40
2337 3044 4.403752 GGGAAAGCTATTGCCTTCAGAATT 59.596 41.667 11.69 0.00 40.41 2.17
2338 3045 5.594317 GGGAAAGCTATTGCCTTCAGAATTA 59.406 40.000 11.69 0.00 40.41 1.40
2339 3046 6.460261 GGGAAAGCTATTGCCTTCAGAATTAC 60.460 42.308 11.69 0.00 40.41 1.89
2340 3047 5.741388 AAGCTATTGCCTTCAGAATTACG 57.259 39.130 0.00 0.00 40.80 3.18
2341 3048 3.561725 AGCTATTGCCTTCAGAATTACGC 59.438 43.478 0.00 0.00 40.80 4.42
2342 3049 3.604772 GCTATTGCCTTCAGAATTACGCG 60.605 47.826 3.53 3.53 0.00 6.01
2343 3050 1.083489 TTGCCTTCAGAATTACGCGG 58.917 50.000 12.47 0.00 0.00 6.46
2344 3051 0.742990 TGCCTTCAGAATTACGCGGG 60.743 55.000 12.47 0.00 0.00 6.13
2345 3052 0.461339 GCCTTCAGAATTACGCGGGA 60.461 55.000 12.47 0.00 0.00 5.14
2346 3053 2.010043 GCCTTCAGAATTACGCGGGAA 61.010 52.381 12.47 4.29 0.00 3.97
2347 3054 2.352388 CCTTCAGAATTACGCGGGAAA 58.648 47.619 12.47 1.53 0.00 3.13
2348 3055 2.095372 CCTTCAGAATTACGCGGGAAAC 59.905 50.000 12.47 3.50 0.00 2.78
2349 3056 2.754946 TCAGAATTACGCGGGAAACT 57.245 45.000 12.47 5.75 0.00 2.66
2350 3057 3.872511 TCAGAATTACGCGGGAAACTA 57.127 42.857 12.47 0.00 0.00 2.24
2351 3058 4.395959 TCAGAATTACGCGGGAAACTAT 57.604 40.909 12.47 0.00 0.00 2.12
2352 3059 4.365723 TCAGAATTACGCGGGAAACTATC 58.634 43.478 12.47 2.72 0.00 2.08
2353 3060 3.181774 CAGAATTACGCGGGAAACTATCG 59.818 47.826 12.47 0.00 0.00 2.92
2354 3061 1.494824 ATTACGCGGGAAACTATCGC 58.505 50.000 12.47 0.00 45.15 4.58
2355 3062 0.457035 TTACGCGGGAAACTATCGCT 59.543 50.000 12.47 0.00 46.23 4.93
2356 3063 0.248743 TACGCGGGAAACTATCGCTG 60.249 55.000 12.47 0.00 46.23 5.18
2357 3064 2.871427 CGCGGGAAACTATCGCTGC 61.871 63.158 0.00 0.00 46.23 5.25
2358 3065 1.521681 GCGGGAAACTATCGCTGCT 60.522 57.895 0.00 0.00 45.16 4.24
2359 3066 1.766143 GCGGGAAACTATCGCTGCTG 61.766 60.000 0.00 0.00 45.16 4.41
2360 3067 1.154205 CGGGAAACTATCGCTGCTGG 61.154 60.000 0.00 0.00 38.78 4.85
2361 3068 0.178068 GGGAAACTATCGCTGCTGGA 59.822 55.000 0.00 0.00 37.96 3.86
2362 3069 1.406887 GGGAAACTATCGCTGCTGGAA 60.407 52.381 0.00 0.00 37.96 3.53
2363 3070 2.356135 GGAAACTATCGCTGCTGGAAA 58.644 47.619 0.00 0.00 0.00 3.13
2364 3071 2.945668 GGAAACTATCGCTGCTGGAAAT 59.054 45.455 0.00 0.00 0.00 2.17
2365 3072 3.242870 GGAAACTATCGCTGCTGGAAATG 60.243 47.826 0.00 0.00 0.00 2.32
2366 3073 1.303309 ACTATCGCTGCTGGAAATGC 58.697 50.000 0.00 0.00 0.00 3.56
2368 3075 1.775039 TATCGCTGCTGGAAATGCGC 61.775 55.000 0.00 0.00 46.73 6.09
2370 3077 4.842091 GCTGCTGGAAATGCGCGG 62.842 66.667 8.83 0.00 0.00 6.46
2371 3078 4.183686 CTGCTGGAAATGCGCGGG 62.184 66.667 8.83 0.00 0.00 6.13
2372 3079 4.713735 TGCTGGAAATGCGCGGGA 62.714 61.111 8.83 0.00 0.00 5.14
2373 3080 3.439540 GCTGGAAATGCGCGGGAA 61.440 61.111 8.83 0.00 0.00 3.97
2374 3081 2.988688 GCTGGAAATGCGCGGGAAA 61.989 57.895 8.83 0.00 0.00 3.13
2375 3082 1.809207 CTGGAAATGCGCGGGAAAT 59.191 52.632 8.83 0.00 0.00 2.17
2376 3083 0.248621 CTGGAAATGCGCGGGAAATC 60.249 55.000 8.83 0.00 0.00 2.17
2377 3084 0.962855 TGGAAATGCGCGGGAAATCA 60.963 50.000 8.83 0.00 0.00 2.57
2378 3085 0.385390 GGAAATGCGCGGGAAATCAT 59.615 50.000 8.83 0.00 0.00 2.45
2379 3086 1.600413 GGAAATGCGCGGGAAATCATC 60.600 52.381 8.83 0.00 0.00 2.92
2380 3087 0.029300 AAATGCGCGGGAAATCATCG 59.971 50.000 8.83 0.00 0.00 3.84
2381 3088 1.095228 AATGCGCGGGAAATCATCGT 61.095 50.000 8.83 0.00 0.00 3.73
2382 3089 1.095228 ATGCGCGGGAAATCATCGTT 61.095 50.000 8.83 0.00 0.00 3.85
2383 3090 1.011131 GCGCGGGAAATCATCGTTC 60.011 57.895 8.83 0.00 0.00 3.95
2384 3091 1.701545 GCGCGGGAAATCATCGTTCA 61.702 55.000 8.83 0.00 0.00 3.18
2385 3092 0.724549 CGCGGGAAATCATCGTTCAA 59.275 50.000 0.00 0.00 0.00 2.69
2386 3093 1.129624 CGCGGGAAATCATCGTTCAAA 59.870 47.619 0.00 0.00 0.00 2.69
2387 3094 2.413502 CGCGGGAAATCATCGTTCAAAA 60.414 45.455 0.00 0.00 0.00 2.44
2388 3095 3.570559 GCGGGAAATCATCGTTCAAAAA 58.429 40.909 0.00 0.00 0.00 1.94
2434 3141 9.969001 AGCACAGTTTTATTTTAGTAATAGGGA 57.031 29.630 0.00 0.00 0.00 4.20
2450 3157 9.950496 AGTAATAGGGATGTGCTATTGAAATAG 57.050 33.333 5.81 5.81 41.02 1.73
2451 3158 9.944376 GTAATAGGGATGTGCTATTGAAATAGA 57.056 33.333 13.13 0.00 40.63 1.98
2452 3159 8.854614 AATAGGGATGTGCTATTGAAATAGAC 57.145 34.615 13.13 9.01 40.63 2.59
2453 3160 5.625150 AGGGATGTGCTATTGAAATAGACC 58.375 41.667 13.13 7.70 40.63 3.85
2454 3161 4.452455 GGGATGTGCTATTGAAATAGACCG 59.548 45.833 13.13 0.00 40.63 4.79
2455 3162 4.452455 GGATGTGCTATTGAAATAGACCGG 59.548 45.833 13.13 0.00 40.63 5.28
2456 3163 4.481368 TGTGCTATTGAAATAGACCGGT 57.519 40.909 6.92 6.92 40.63 5.28
2457 3164 4.439057 TGTGCTATTGAAATAGACCGGTC 58.561 43.478 27.67 27.67 40.63 4.79
2458 3165 4.081365 TGTGCTATTGAAATAGACCGGTCA 60.081 41.667 35.00 21.39 40.63 4.02
2459 3166 4.873827 GTGCTATTGAAATAGACCGGTCAA 59.126 41.667 35.00 20.66 40.63 3.18
2460 3167 5.006746 GTGCTATTGAAATAGACCGGTCAAG 59.993 44.000 35.00 17.30 40.63 3.02
2461 3168 5.116882 GCTATTGAAATAGACCGGTCAAGT 58.883 41.667 35.00 18.22 40.63 3.16
2462 3169 5.585047 GCTATTGAAATAGACCGGTCAAGTT 59.415 40.000 35.00 23.89 40.63 2.66
2463 3170 6.093633 GCTATTGAAATAGACCGGTCAAGTTT 59.906 38.462 35.00 28.22 40.63 2.66
2464 3171 5.682943 TTGAAATAGACCGGTCAAGTTTG 57.317 39.130 35.00 0.00 0.00 2.93
2465 3172 4.710324 TGAAATAGACCGGTCAAGTTTGT 58.290 39.130 35.00 15.95 0.00 2.83
2466 3173 5.856156 TGAAATAGACCGGTCAAGTTTGTA 58.144 37.500 35.00 17.64 0.00 2.41
2467 3174 5.697633 TGAAATAGACCGGTCAAGTTTGTAC 59.302 40.000 35.00 18.78 0.00 2.90
2468 3175 2.144482 AGACCGGTCAAGTTTGTACG 57.856 50.000 35.00 0.00 0.00 3.67
2469 3176 1.142474 GACCGGTCAAGTTTGTACGG 58.858 55.000 29.75 20.00 46.09 4.02
2470 3177 0.752054 ACCGGTCAAGTTTGTACGGA 59.248 50.000 24.88 0.00 44.72 4.69
2471 3178 1.345415 ACCGGTCAAGTTTGTACGGAT 59.655 47.619 24.88 13.39 44.72 4.18
2472 3179 2.224354 ACCGGTCAAGTTTGTACGGATT 60.224 45.455 24.88 10.16 44.72 3.01
2473 3180 3.006752 ACCGGTCAAGTTTGTACGGATTA 59.993 43.478 24.88 0.00 44.72 1.75
2474 3181 3.995705 CCGGTCAAGTTTGTACGGATTAA 59.004 43.478 18.16 0.00 44.72 1.40
2475 3182 4.451774 CCGGTCAAGTTTGTACGGATTAAA 59.548 41.667 18.16 0.00 44.72 1.52
2476 3183 5.122711 CCGGTCAAGTTTGTACGGATTAAAT 59.877 40.000 18.16 0.00 44.72 1.40
2477 3184 6.019152 CGGTCAAGTTTGTACGGATTAAATG 58.981 40.000 0.00 0.00 0.00 2.32
2478 3185 6.128499 CGGTCAAGTTTGTACGGATTAAATGA 60.128 38.462 0.00 0.00 0.00 2.57
2479 3186 7.019418 GGTCAAGTTTGTACGGATTAAATGAC 58.981 38.462 0.00 0.00 33.41 3.06
2480 3187 7.094933 GGTCAAGTTTGTACGGATTAAATGACT 60.095 37.037 10.97 0.00 34.33 3.41
2481 3188 8.287503 GTCAAGTTTGTACGGATTAAATGACTT 58.712 33.333 0.00 0.00 31.94 3.01
2482 3189 8.500773 TCAAGTTTGTACGGATTAAATGACTTC 58.499 33.333 0.00 0.00 0.00 3.01
2483 3190 7.373778 AGTTTGTACGGATTAAATGACTTCC 57.626 36.000 0.00 0.00 0.00 3.46
2484 3191 6.938030 AGTTTGTACGGATTAAATGACTTCCA 59.062 34.615 0.00 0.00 0.00 3.53
2485 3192 7.610305 AGTTTGTACGGATTAAATGACTTCCAT 59.390 33.333 0.00 0.00 36.99 3.41
2486 3193 7.931578 TTGTACGGATTAAATGACTTCCATT 57.068 32.000 0.00 0.00 46.86 3.16
2496 3203 5.835113 AATGACTTCCATTTATTCGTGGG 57.165 39.130 0.00 0.00 42.55 4.61
2497 3204 3.616219 TGACTTCCATTTATTCGTGGGG 58.384 45.455 0.00 0.00 36.15 4.96
2498 3205 3.264706 TGACTTCCATTTATTCGTGGGGA 59.735 43.478 0.00 0.00 36.15 4.81
2499 3206 4.080015 TGACTTCCATTTATTCGTGGGGAT 60.080 41.667 0.00 0.00 36.15 3.85
2500 3207 5.131308 TGACTTCCATTTATTCGTGGGGATA 59.869 40.000 0.00 0.00 36.15 2.59
2501 3208 6.183361 TGACTTCCATTTATTCGTGGGGATAT 60.183 38.462 0.00 0.00 36.15 1.63
2502 3209 6.003950 ACTTCCATTTATTCGTGGGGATATG 58.996 40.000 0.00 0.00 36.15 1.78
2503 3210 5.576563 TCCATTTATTCGTGGGGATATGT 57.423 39.130 0.00 0.00 36.15 2.29
2504 3211 5.312895 TCCATTTATTCGTGGGGATATGTG 58.687 41.667 0.00 0.00 36.15 3.21
2505 3212 5.072464 TCCATTTATTCGTGGGGATATGTGA 59.928 40.000 0.00 0.00 36.15 3.58
2506 3213 5.181245 CCATTTATTCGTGGGGATATGTGAC 59.819 44.000 0.00 0.00 0.00 3.67
2507 3214 5.360649 TTTATTCGTGGGGATATGTGACA 57.639 39.130 0.00 0.00 0.00 3.58
2508 3215 5.560722 TTATTCGTGGGGATATGTGACAT 57.439 39.130 2.65 2.65 0.00 3.06
2509 3216 2.908688 TCGTGGGGATATGTGACATG 57.091 50.000 8.61 0.00 0.00 3.21
2510 3217 1.202639 TCGTGGGGATATGTGACATGC 60.203 52.381 8.61 0.00 0.00 4.06
2511 3218 1.474855 CGTGGGGATATGTGACATGCA 60.475 52.381 8.61 0.00 0.00 3.96
2512 3219 2.811504 CGTGGGGATATGTGACATGCAT 60.812 50.000 8.61 0.00 0.00 3.96
2513 3220 3.556843 CGTGGGGATATGTGACATGCATA 60.557 47.826 8.61 0.00 33.91 3.14
2514 3221 4.592942 GTGGGGATATGTGACATGCATAT 58.407 43.478 8.61 4.54 40.88 1.78
2530 3237 5.684550 TGCATATCATGTTGAAGATCTGC 57.315 39.130 0.00 0.00 41.78 4.26
2531 3238 4.517832 TGCATATCATGTTGAAGATCTGCC 59.482 41.667 0.00 0.00 41.14 4.85
2532 3239 4.760715 GCATATCATGTTGAAGATCTGCCT 59.239 41.667 0.00 0.00 37.99 4.75
2533 3240 5.334957 GCATATCATGTTGAAGATCTGCCTG 60.335 44.000 0.00 0.00 37.99 4.85
2534 3241 2.362736 TCATGTTGAAGATCTGCCTGC 58.637 47.619 0.00 0.00 0.00 4.85
2535 3242 2.026542 TCATGTTGAAGATCTGCCTGCT 60.027 45.455 0.00 0.00 0.00 4.24
2536 3243 2.574006 TGTTGAAGATCTGCCTGCTT 57.426 45.000 0.00 0.00 0.00 3.91
2537 3244 2.867624 TGTTGAAGATCTGCCTGCTTT 58.132 42.857 0.00 0.00 0.00 3.51
2538 3245 2.816087 TGTTGAAGATCTGCCTGCTTTC 59.184 45.455 0.00 0.00 0.00 2.62
2539 3246 2.816087 GTTGAAGATCTGCCTGCTTTCA 59.184 45.455 0.00 0.00 0.00 2.69
2540 3247 3.361281 TGAAGATCTGCCTGCTTTCAT 57.639 42.857 0.00 0.00 0.00 2.57
2541 3248 3.693807 TGAAGATCTGCCTGCTTTCATT 58.306 40.909 0.00 0.00 0.00 2.57
2542 3249 3.442625 TGAAGATCTGCCTGCTTTCATTG 59.557 43.478 0.00 0.00 0.00 2.82
2543 3250 3.361281 AGATCTGCCTGCTTTCATTGA 57.639 42.857 0.00 0.00 0.00 2.57
2544 3251 3.280295 AGATCTGCCTGCTTTCATTGAG 58.720 45.455 0.00 0.00 0.00 3.02
2545 3252 1.171308 TCTGCCTGCTTTCATTGAGC 58.829 50.000 0.00 0.00 40.53 4.26
2546 3253 0.172803 CTGCCTGCTTTCATTGAGCC 59.827 55.000 0.00 0.00 39.38 4.70
2547 3254 0.540133 TGCCTGCTTTCATTGAGCCA 60.540 50.000 0.00 0.00 39.38 4.75
2548 3255 0.822164 GCCTGCTTTCATTGAGCCAT 59.178 50.000 0.00 0.00 39.38 4.40
2549 3256 2.026641 GCCTGCTTTCATTGAGCCATA 58.973 47.619 0.00 0.00 39.38 2.74
2550 3257 2.428171 GCCTGCTTTCATTGAGCCATAA 59.572 45.455 0.00 0.00 39.38 1.90
2551 3258 3.119029 GCCTGCTTTCATTGAGCCATAAA 60.119 43.478 0.00 0.00 39.38 1.40
2552 3259 4.621274 GCCTGCTTTCATTGAGCCATAAAA 60.621 41.667 0.00 0.00 39.38 1.52
2553 3260 5.481105 CCTGCTTTCATTGAGCCATAAAAA 58.519 37.500 0.00 0.00 39.38 1.94
2571 3278 4.400529 AAAAAGCCACCACCTTTTGTAG 57.599 40.909 0.49 0.00 40.53 2.74
2572 3279 2.748209 AAGCCACCACCTTTTGTAGT 57.252 45.000 0.00 0.00 0.00 2.73
2573 3280 2.748209 AGCCACCACCTTTTGTAGTT 57.252 45.000 0.00 0.00 0.00 2.24
2574 3281 3.026707 AGCCACCACCTTTTGTAGTTT 57.973 42.857 0.00 0.00 0.00 2.66
2575 3282 4.173290 AGCCACCACCTTTTGTAGTTTA 57.827 40.909 0.00 0.00 0.00 2.01
2576 3283 4.736473 AGCCACCACCTTTTGTAGTTTAT 58.264 39.130 0.00 0.00 0.00 1.40
2577 3284 5.883180 AGCCACCACCTTTTGTAGTTTATA 58.117 37.500 0.00 0.00 0.00 0.98
2578 3285 6.490492 AGCCACCACCTTTTGTAGTTTATAT 58.510 36.000 0.00 0.00 0.00 0.86
2579 3286 7.635648 AGCCACCACCTTTTGTAGTTTATATA 58.364 34.615 0.00 0.00 0.00 0.86
2580 3287 8.110908 AGCCACCACCTTTTGTAGTTTATATAA 58.889 33.333 0.00 0.00 0.00 0.98
2581 3288 8.741841 GCCACCACCTTTTGTAGTTTATATAAA 58.258 33.333 3.71 3.71 0.00 1.40
2606 3313 8.783833 AATATGACTGAATATGTGTAGGATGC 57.216 34.615 0.00 0.00 0.00 3.91
2607 3314 5.612725 TGACTGAATATGTGTAGGATGCA 57.387 39.130 0.00 0.00 0.00 3.96
2626 3333 2.440409 CACATCTGGTGGGAGAAAAGG 58.560 52.381 0.00 0.00 44.04 3.11
2627 3334 1.355720 ACATCTGGTGGGAGAAAAGGG 59.644 52.381 0.00 0.00 0.00 3.95
2628 3335 1.002857 ATCTGGTGGGAGAAAAGGGG 58.997 55.000 0.00 0.00 0.00 4.79
2629 3336 1.140134 TCTGGTGGGAGAAAAGGGGG 61.140 60.000 0.00 0.00 0.00 5.40
2630 3337 1.388217 TGGTGGGAGAAAAGGGGGT 60.388 57.895 0.00 0.00 0.00 4.95
2631 3338 1.076727 GGTGGGAGAAAAGGGGGTG 59.923 63.158 0.00 0.00 0.00 4.61
2632 3339 1.726192 GGTGGGAGAAAAGGGGGTGT 61.726 60.000 0.00 0.00 0.00 4.16
2633 3340 0.187606 GTGGGAGAAAAGGGGGTGTT 59.812 55.000 0.00 0.00 0.00 3.32
2634 3341 0.187361 TGGGAGAAAAGGGGGTGTTG 59.813 55.000 0.00 0.00 0.00 3.33
2635 3342 0.187606 GGGAGAAAAGGGGGTGTTGT 59.812 55.000 0.00 0.00 0.00 3.32
2636 3343 1.426215 GGGAGAAAAGGGGGTGTTGTA 59.574 52.381 0.00 0.00 0.00 2.41
2637 3344 2.042569 GGGAGAAAAGGGGGTGTTGTAT 59.957 50.000 0.00 0.00 0.00 2.29
2638 3345 3.089284 GGAGAAAAGGGGGTGTTGTATG 58.911 50.000 0.00 0.00 0.00 2.39
2639 3346 3.499745 GGAGAAAAGGGGGTGTTGTATGT 60.500 47.826 0.00 0.00 0.00 2.29
2640 3347 4.149598 GAGAAAAGGGGGTGTTGTATGTT 58.850 43.478 0.00 0.00 0.00 2.71
2641 3348 3.895041 AGAAAAGGGGGTGTTGTATGTTG 59.105 43.478 0.00 0.00 0.00 3.33
2642 3349 3.603965 AAAGGGGGTGTTGTATGTTGA 57.396 42.857 0.00 0.00 0.00 3.18
2643 3350 3.825908 AAGGGGGTGTTGTATGTTGAT 57.174 42.857 0.00 0.00 0.00 2.57
2644 3351 3.825908 AGGGGGTGTTGTATGTTGATT 57.174 42.857 0.00 0.00 0.00 2.57
2645 3352 3.697166 AGGGGGTGTTGTATGTTGATTC 58.303 45.455 0.00 0.00 0.00 2.52
2711 3448 5.682943 TTTCTAGTTTGTTGGGACATTCG 57.317 39.130 0.00 0.00 39.30 3.34
3070 4422 4.908601 TCTTGATCTCTTGGTGCCTAAA 57.091 40.909 0.00 0.00 0.00 1.85
3099 4451 6.657541 ACACTTGTTGACTTTCAAGGTTCTTA 59.342 34.615 9.21 0.00 43.40 2.10
3128 4480 4.065789 AGGACAAAGAAACCATCGAACTC 58.934 43.478 0.00 0.00 0.00 3.01
3274 4743 9.953697 TTAAACTAACGCATATTTGTTTTCAGT 57.046 25.926 9.13 0.00 38.14 3.41
3451 6913 3.142951 CCCTGACAAACGTGGAAACATA 58.857 45.455 0.00 0.00 46.14 2.29
3472 6934 2.965147 AGCCCGCTTTATTAATGGCATT 59.035 40.909 18.01 18.01 41.33 3.56
3782 7247 1.141053 GGAGTCTGGGCGATTAATGGT 59.859 52.381 0.00 0.00 0.00 3.55
3972 7443 0.252881 TCCTGACCTCCCAAGATGCT 60.253 55.000 0.00 0.00 0.00 3.79
3976 7447 0.615331 GACCTCCCAAGATGCTGTCA 59.385 55.000 0.00 0.00 0.00 3.58
4036 7507 2.806818 GACTTGAGTCTTTTTCGGGGAC 59.193 50.000 3.93 0.00 41.65 4.46
4041 7512 3.336138 AGTCTTTTTCGGGGACTCATC 57.664 47.619 0.00 0.00 35.72 2.92
4089 7561 0.704664 TGCCCCTGTCTCTCTCTGTA 59.295 55.000 0.00 0.00 0.00 2.74
4150 7622 7.352079 ACATTTGAAACTGGAAGAGAAATGT 57.648 32.000 0.00 0.00 37.18 2.71
4231 7705 2.879756 GCTTTCCCTATTGGTGCTGTGA 60.880 50.000 0.00 0.00 34.77 3.58
4310 7784 7.213678 TGTTCTTTTGACACTTTCCAACTTTT 58.786 30.769 0.00 0.00 0.00 2.27
4512 8011 8.472007 TGAACCCATAACTTGTCAACTAAAAT 57.528 30.769 0.00 0.00 0.00 1.82
4697 8199 6.192234 AGTACAACTTGTCGTATACTCCAG 57.808 41.667 0.00 0.00 0.00 3.86
4728 8230 7.136885 CCCCCATGTTATACTCTATATACCCA 58.863 42.308 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 56 1.271102 TGGCGTGAAGGGTTAAAATGC 59.729 47.619 0.00 0.00 0.00 3.56
217 231 2.031420 CGATTACGCACGAAGAGGGATA 60.031 50.000 0.00 0.00 34.79 2.59
218 232 1.269102 CGATTACGCACGAAGAGGGAT 60.269 52.381 0.00 0.00 34.79 3.85
220 234 0.870307 CCGATTACGCACGAAGAGGG 60.870 60.000 0.00 0.00 38.29 4.30
223 237 1.517694 GCCCGATTACGCACGAAGA 60.518 57.895 0.00 0.00 38.29 2.87
224 238 1.151777 ATGCCCGATTACGCACGAAG 61.152 55.000 0.00 0.00 37.93 3.79
226 240 1.590525 GATGCCCGATTACGCACGA 60.591 57.895 0.00 0.00 37.93 4.35
246 261 4.179579 GAGCGCGGGACAAATGCC 62.180 66.667 8.83 0.00 0.00 4.40
274 289 5.928264 GGTGATTTTGTTTTGATCCTCTTGG 59.072 40.000 0.00 0.00 0.00 3.61
318 334 5.398169 TGAAATCTTTTCACACACACACAC 58.602 37.500 0.00 0.00 0.00 3.82
420 439 2.167037 CCCCTCCCCAAGGTCCAAA 61.167 63.158 0.00 0.00 44.56 3.28
488 513 4.821589 CTGTCTCGCCTTCGCCCC 62.822 72.222 0.00 0.00 35.26 5.80
489 514 3.708220 CTCTGTCTCGCCTTCGCCC 62.708 68.421 0.00 0.00 35.26 6.13
510 535 2.300437 CCTCTCCTCTGGTTCTCGTTTT 59.700 50.000 0.00 0.00 0.00 2.43
512 537 1.551452 CCTCTCCTCTGGTTCTCGTT 58.449 55.000 0.00 0.00 0.00 3.85
1241 1410 4.189188 ATCGAGTCGCCGGGTTCG 62.189 66.667 7.92 8.18 34.56 3.95
1242 1411 2.278661 GATCGAGTCGCCGGGTTC 60.279 66.667 7.92 0.00 0.00 3.62
1243 1412 2.754658 AGATCGAGTCGCCGGGTT 60.755 61.111 7.92 0.00 0.00 4.11
1244 1413 3.210528 GAGATCGAGTCGCCGGGT 61.211 66.667 7.92 0.00 0.00 5.28
1245 1414 4.315122 CGAGATCGAGTCGCCGGG 62.315 72.222 7.92 0.00 43.02 5.73
1250 1419 1.543941 GCAATGGCGAGATCGAGTCG 61.544 60.000 14.06 14.06 43.02 4.18
1251 1420 1.218230 GGCAATGGCGAGATCGAGTC 61.218 60.000 6.39 0.00 43.02 3.36
1252 1421 1.227380 GGCAATGGCGAGATCGAGT 60.227 57.895 6.39 0.00 43.02 4.18
1253 1422 3.635204 GGCAATGGCGAGATCGAG 58.365 61.111 6.39 0.00 43.02 4.04
1278 1447 3.319198 GCGGACACAAGAGGGGGA 61.319 66.667 0.00 0.00 0.00 4.81
1322 1499 2.692557 ACAAGAGGACGAGATGAGATGG 59.307 50.000 0.00 0.00 0.00 3.51
1510 1694 1.555075 CTCCCTAGCTTAAGCCACACA 59.445 52.381 23.71 4.94 43.38 3.72
1513 1697 2.112190 AGACTCCCTAGCTTAAGCCAC 58.888 52.381 23.71 6.74 43.38 5.01
1690 1907 4.213270 ACAATCAACGAATCGACACACAAT 59.787 37.500 10.55 0.00 0.00 2.71
1699 1916 6.058284 GCAAAAGAAAACAATCAACGAATCG 58.942 36.000 0.00 0.00 0.00 3.34
1717 1950 2.079925 GACTGGTCAGCCTAGCAAAAG 58.920 52.381 0.00 0.00 35.27 2.27
1854 2096 3.361158 TGGTTCGGCCACGCAATG 61.361 61.111 2.24 0.00 43.61 2.82
1865 2107 1.021202 TTTCCAGCAGTGTTGGTTCG 58.979 50.000 23.58 0.51 37.02 3.95
1866 2108 3.364964 CGTATTTCCAGCAGTGTTGGTTC 60.365 47.826 23.58 10.81 37.02 3.62
1872 2114 1.019278 CCGCGTATTTCCAGCAGTGT 61.019 55.000 4.92 0.00 0.00 3.55
1933 2175 9.436957 CTTCAACAACACAATCCTACTAATAGT 57.563 33.333 0.00 0.00 0.00 2.12
1936 2178 9.436957 CTACTTCAACAACACAATCCTACTAAT 57.563 33.333 0.00 0.00 0.00 1.73
1953 2223 5.995897 ACATAGTTGACCAACCTACTTCAAC 59.004 40.000 9.07 5.38 45.42 3.18
2006 2276 4.436986 CGAATCATCCTGATATGCATGTGC 60.437 45.833 10.16 0.00 35.76 4.57
2013 2283 5.069501 TCTCTGCGAATCATCCTGATATG 57.930 43.478 0.00 0.00 35.76 1.78
2033 2303 6.222038 ACAGGAAATACATGTGACGTATCT 57.778 37.500 9.11 0.00 42.04 1.98
2060 2330 4.197750 CTCAATAAGTGCAAGGCAGATCT 58.802 43.478 0.00 0.00 40.08 2.75
2067 2337 5.581126 TTTATGGCTCAATAAGTGCAAGG 57.419 39.130 0.00 0.00 38.46 3.61
2091 2361 5.738619 AATAAACTAAAAAGGTGGCAGGG 57.261 39.130 0.00 0.00 0.00 4.45
2092 2362 9.549078 TTTTAAATAAACTAAAAAGGTGGCAGG 57.451 29.630 0.00 0.00 0.00 4.85
2150 2421 9.110502 CCTACAAGATATAACTTTTTCTCCCAC 57.889 37.037 0.00 0.00 0.00 4.61
2172 2455 6.584185 AAATCAACATACAACAACCCCTAC 57.416 37.500 0.00 0.00 0.00 3.18
2195 2898 7.012894 CCCTACAACAAAACAGAACAGTTCATA 59.987 37.037 15.85 0.00 0.00 2.15
2214 2917 6.552350 GGATACTACTGTATTGACCCCTACAA 59.448 42.308 0.00 0.00 39.29 2.41
2215 2918 6.073314 GGATACTACTGTATTGACCCCTACA 58.927 44.000 0.00 0.00 39.29 2.74
2216 2919 6.587206 GGATACTACTGTATTGACCCCTAC 57.413 45.833 0.00 0.00 39.29 3.18
2246 2953 9.137459 CCTAGAAACTAGAATTCACTGGAGATA 57.863 37.037 8.44 0.00 0.00 1.98
2247 2954 7.621683 ACCTAGAAACTAGAATTCACTGGAGAT 59.378 37.037 8.44 0.00 0.00 2.75
2248 2955 6.954684 ACCTAGAAACTAGAATTCACTGGAGA 59.045 38.462 8.44 0.00 0.00 3.71
2249 2956 7.176589 ACCTAGAAACTAGAATTCACTGGAG 57.823 40.000 8.44 0.00 0.00 3.86
2250 2957 8.660295 TTACCTAGAAACTAGAATTCACTGGA 57.340 34.615 8.44 0.00 0.00 3.86
2251 2958 9.319143 CATTACCTAGAAACTAGAATTCACTGG 57.681 37.037 8.44 12.68 0.00 4.00
2260 2967 9.485206 GTGTTTGTTCATTACCTAGAAACTAGA 57.515 33.333 0.00 0.00 0.00 2.43
2261 2968 9.268268 TGTGTTTGTTCATTACCTAGAAACTAG 57.732 33.333 0.00 0.00 0.00 2.57
2262 2969 9.268268 CTGTGTTTGTTCATTACCTAGAAACTA 57.732 33.333 0.00 0.00 0.00 2.24
2263 2970 7.255139 GCTGTGTTTGTTCATTACCTAGAAACT 60.255 37.037 0.00 0.00 0.00 2.66
2264 2971 6.856426 GCTGTGTTTGTTCATTACCTAGAAAC 59.144 38.462 0.00 0.00 0.00 2.78
2265 2972 6.293190 CGCTGTGTTTGTTCATTACCTAGAAA 60.293 38.462 0.00 0.00 0.00 2.52
2266 2973 5.178623 CGCTGTGTTTGTTCATTACCTAGAA 59.821 40.000 0.00 0.00 0.00 2.10
2267 2974 4.688879 CGCTGTGTTTGTTCATTACCTAGA 59.311 41.667 0.00 0.00 0.00 2.43
2268 2975 4.688879 TCGCTGTGTTTGTTCATTACCTAG 59.311 41.667 0.00 0.00 0.00 3.02
2269 2976 4.633175 TCGCTGTGTTTGTTCATTACCTA 58.367 39.130 0.00 0.00 0.00 3.08
2270 2977 3.472652 TCGCTGTGTTTGTTCATTACCT 58.527 40.909 0.00 0.00 0.00 3.08
2271 2978 3.810373 CTCGCTGTGTTTGTTCATTACC 58.190 45.455 0.00 0.00 0.00 2.85
2272 2979 3.058914 AGCTCGCTGTGTTTGTTCATTAC 60.059 43.478 0.00 0.00 0.00 1.89
2273 2980 3.138304 AGCTCGCTGTGTTTGTTCATTA 58.862 40.909 0.00 0.00 0.00 1.90
2274 2981 1.949525 AGCTCGCTGTGTTTGTTCATT 59.050 42.857 0.00 0.00 0.00 2.57
2275 2982 1.597742 AGCTCGCTGTGTTTGTTCAT 58.402 45.000 0.00 0.00 0.00 2.57
2276 2983 2.232756 TAGCTCGCTGTGTTTGTTCA 57.767 45.000 0.85 0.00 0.00 3.18
2277 2984 2.736721 TGATAGCTCGCTGTGTTTGTTC 59.263 45.455 0.85 0.00 0.00 3.18
2278 2985 2.480419 GTGATAGCTCGCTGTGTTTGTT 59.520 45.455 0.85 0.00 0.00 2.83
2279 2986 2.069273 GTGATAGCTCGCTGTGTTTGT 58.931 47.619 0.85 0.00 0.00 2.83
2280 2987 1.394917 GGTGATAGCTCGCTGTGTTTG 59.605 52.381 0.85 0.00 32.30 2.93
2281 2988 1.001974 TGGTGATAGCTCGCTGTGTTT 59.998 47.619 0.85 0.00 32.30 2.83
2282 2989 0.608130 TGGTGATAGCTCGCTGTGTT 59.392 50.000 0.85 0.00 32.30 3.32
2283 2990 0.108615 GTGGTGATAGCTCGCTGTGT 60.109 55.000 0.85 0.00 32.30 3.72
2284 2991 0.174389 AGTGGTGATAGCTCGCTGTG 59.826 55.000 0.85 0.00 32.30 3.66
2285 2992 0.174389 CAGTGGTGATAGCTCGCTGT 59.826 55.000 0.85 0.00 35.16 4.40
2286 2993 1.150567 GCAGTGGTGATAGCTCGCTG 61.151 60.000 8.21 8.21 40.70 5.18
2287 2994 1.142748 GCAGTGGTGATAGCTCGCT 59.857 57.895 0.00 0.00 32.30 4.93
2288 2995 0.740868 TTGCAGTGGTGATAGCTCGC 60.741 55.000 0.00 0.00 0.00 5.03
2289 2996 1.725641 TTTGCAGTGGTGATAGCTCG 58.274 50.000 0.00 0.00 0.00 5.03
2290 2997 2.223433 GCATTTGCAGTGGTGATAGCTC 60.223 50.000 0.00 0.00 41.59 4.09
2291 2998 1.747355 GCATTTGCAGTGGTGATAGCT 59.253 47.619 0.00 0.00 41.59 3.32
2292 2999 1.532505 CGCATTTGCAGTGGTGATAGC 60.533 52.381 3.13 0.00 42.21 2.97
2293 3000 1.739466 ACGCATTTGCAGTGGTGATAG 59.261 47.619 3.13 0.00 42.21 2.08
2294 3001 1.468127 CACGCATTTGCAGTGGTGATA 59.532 47.619 15.13 0.00 42.21 2.15
2295 3002 0.241749 CACGCATTTGCAGTGGTGAT 59.758 50.000 15.13 0.00 42.21 3.06
2296 3003 1.653667 CACGCATTTGCAGTGGTGA 59.346 52.632 15.13 0.00 42.21 4.02
2297 3004 4.231753 CACGCATTTGCAGTGGTG 57.768 55.556 15.13 6.73 42.21 4.17
2300 3007 0.031857 TTTCCCACGCATTTGCAGTG 59.968 50.000 15.66 15.66 42.21 3.66
2301 3008 0.314935 CTTTCCCACGCATTTGCAGT 59.685 50.000 3.13 0.00 42.21 4.40
2302 3009 1.010419 GCTTTCCCACGCATTTGCAG 61.010 55.000 3.13 0.00 42.21 4.41
2303 3010 1.006337 GCTTTCCCACGCATTTGCA 60.006 52.632 3.13 0.00 42.21 4.08
2304 3011 0.525761 TAGCTTTCCCACGCATTTGC 59.474 50.000 0.00 0.00 37.78 3.68
2305 3012 3.181397 CAATAGCTTTCCCACGCATTTG 58.819 45.455 0.00 0.00 0.00 2.32
2306 3013 2.417243 GCAATAGCTTTCCCACGCATTT 60.417 45.455 0.00 0.00 37.91 2.32
2307 3014 1.134946 GCAATAGCTTTCCCACGCATT 59.865 47.619 0.00 0.00 37.91 3.56
2308 3015 0.740737 GCAATAGCTTTCCCACGCAT 59.259 50.000 0.00 0.00 37.91 4.73
2309 3016 1.312371 GGCAATAGCTTTCCCACGCA 61.312 55.000 0.00 0.00 41.70 5.24
2310 3017 1.032114 AGGCAATAGCTTTCCCACGC 61.032 55.000 0.00 0.00 41.70 5.34
2311 3018 1.463674 AAGGCAATAGCTTTCCCACG 58.536 50.000 0.00 0.00 34.67 4.94
2317 3024 5.449177 GCGTAATTCTGAAGGCAATAGCTTT 60.449 40.000 0.00 0.00 43.40 3.51
2318 3025 4.035675 GCGTAATTCTGAAGGCAATAGCTT 59.964 41.667 0.00 0.00 41.70 3.74
2319 3026 3.561725 GCGTAATTCTGAAGGCAATAGCT 59.438 43.478 0.00 0.00 41.70 3.32
2320 3027 3.604772 CGCGTAATTCTGAAGGCAATAGC 60.605 47.826 0.00 0.00 41.10 2.97
2321 3028 3.059597 CCGCGTAATTCTGAAGGCAATAG 60.060 47.826 4.92 0.00 0.00 1.73
2322 3029 2.869801 CCGCGTAATTCTGAAGGCAATA 59.130 45.455 4.92 0.00 0.00 1.90
2323 3030 1.670811 CCGCGTAATTCTGAAGGCAAT 59.329 47.619 4.92 0.00 0.00 3.56
2324 3031 1.083489 CCGCGTAATTCTGAAGGCAA 58.917 50.000 4.92 0.00 0.00 4.52
2325 3032 0.742990 CCCGCGTAATTCTGAAGGCA 60.743 55.000 4.92 0.00 0.00 4.75
2326 3033 0.461339 TCCCGCGTAATTCTGAAGGC 60.461 55.000 4.92 0.00 0.00 4.35
2327 3034 2.018542 TTCCCGCGTAATTCTGAAGG 57.981 50.000 4.92 0.00 0.00 3.46
2328 3035 3.000727 AGTTTCCCGCGTAATTCTGAAG 58.999 45.455 4.92 0.00 0.00 3.02
2329 3036 3.048337 AGTTTCCCGCGTAATTCTGAA 57.952 42.857 4.92 0.00 0.00 3.02
2330 3037 2.754946 AGTTTCCCGCGTAATTCTGA 57.245 45.000 4.92 0.00 0.00 3.27
2331 3038 3.181774 CGATAGTTTCCCGCGTAATTCTG 59.818 47.826 4.92 0.00 0.00 3.02
2332 3039 3.378339 CGATAGTTTCCCGCGTAATTCT 58.622 45.455 4.92 0.28 0.00 2.40
2333 3040 2.097056 GCGATAGTTTCCCGCGTAATTC 60.097 50.000 4.92 0.00 39.54 2.17
2334 3041 1.862827 GCGATAGTTTCCCGCGTAATT 59.137 47.619 4.92 0.00 39.54 1.40
2335 3042 1.494824 GCGATAGTTTCCCGCGTAAT 58.505 50.000 4.92 0.00 39.54 1.89
2336 3043 2.962089 GCGATAGTTTCCCGCGTAA 58.038 52.632 4.92 0.00 39.54 3.18
2337 3044 4.715983 GCGATAGTTTCCCGCGTA 57.284 55.556 4.92 0.00 39.54 4.42
2341 3048 1.154205 CCAGCAGCGATAGTTTCCCG 61.154 60.000 0.00 0.00 39.35 5.14
2342 3049 0.178068 TCCAGCAGCGATAGTTTCCC 59.822 55.000 0.00 0.00 39.35 3.97
2343 3050 2.024176 TTCCAGCAGCGATAGTTTCC 57.976 50.000 0.00 0.00 39.35 3.13
2344 3051 3.790123 GCATTTCCAGCAGCGATAGTTTC 60.790 47.826 0.00 0.00 39.35 2.78
2345 3052 2.098117 GCATTTCCAGCAGCGATAGTTT 59.902 45.455 0.00 0.00 39.35 2.66
2346 3053 1.672881 GCATTTCCAGCAGCGATAGTT 59.327 47.619 0.00 0.00 39.35 2.24
2347 3054 1.303309 GCATTTCCAGCAGCGATAGT 58.697 50.000 0.00 0.00 39.35 2.12
2353 3060 4.842091 CCGCGCATTTCCAGCAGC 62.842 66.667 8.75 0.00 0.00 5.25
2354 3061 4.183686 CCCGCGCATTTCCAGCAG 62.184 66.667 8.75 0.00 0.00 4.24
2355 3062 4.713735 TCCCGCGCATTTCCAGCA 62.714 61.111 8.75 0.00 0.00 4.41
2356 3063 2.283472 ATTTCCCGCGCATTTCCAGC 62.283 55.000 8.75 0.00 0.00 4.85
2357 3064 0.248621 GATTTCCCGCGCATTTCCAG 60.249 55.000 8.75 0.00 0.00 3.86
2358 3065 0.962855 TGATTTCCCGCGCATTTCCA 60.963 50.000 8.75 0.00 0.00 3.53
2359 3066 0.385390 ATGATTTCCCGCGCATTTCC 59.615 50.000 8.75 0.00 0.00 3.13
2360 3067 1.758783 GATGATTTCCCGCGCATTTC 58.241 50.000 8.75 0.00 0.00 2.17
2361 3068 0.029300 CGATGATTTCCCGCGCATTT 59.971 50.000 8.75 0.00 0.00 2.32
2362 3069 1.095228 ACGATGATTTCCCGCGCATT 61.095 50.000 8.75 0.00 0.00 3.56
2363 3070 1.095228 AACGATGATTTCCCGCGCAT 61.095 50.000 8.75 0.00 0.00 4.73
2364 3071 1.701545 GAACGATGATTTCCCGCGCA 61.702 55.000 8.75 0.00 0.00 6.09
2365 3072 1.011131 GAACGATGATTTCCCGCGC 60.011 57.895 0.00 0.00 0.00 6.86
2366 3073 0.724549 TTGAACGATGATTTCCCGCG 59.275 50.000 0.00 0.00 0.00 6.46
2367 3074 2.911819 TTTGAACGATGATTTCCCGC 57.088 45.000 0.00 0.00 0.00 6.13
2408 3115 9.969001 TCCCTATTACTAAAATAAAACTGTGCT 57.031 29.630 0.00 0.00 0.00 4.40
2424 3131 9.950496 CTATTTCAATAGCACATCCCTATTACT 57.050 33.333 0.00 0.00 34.61 2.24
2425 3132 9.944376 TCTATTTCAATAGCACATCCCTATTAC 57.056 33.333 2.12 0.00 38.57 1.89
2426 3133 9.944376 GTCTATTTCAATAGCACATCCCTATTA 57.056 33.333 2.12 0.00 38.57 0.98
2427 3134 7.885399 GGTCTATTTCAATAGCACATCCCTATT 59.115 37.037 2.12 0.00 38.57 1.73
2428 3135 7.398024 GGTCTATTTCAATAGCACATCCCTAT 58.602 38.462 2.12 0.00 38.57 2.57
2429 3136 6.518369 CGGTCTATTTCAATAGCACATCCCTA 60.518 42.308 2.12 0.00 38.57 3.53
2430 3137 5.625150 GGTCTATTTCAATAGCACATCCCT 58.375 41.667 2.12 0.00 38.57 4.20
2431 3138 4.452455 CGGTCTATTTCAATAGCACATCCC 59.548 45.833 2.12 0.00 38.57 3.85
2432 3139 4.452455 CCGGTCTATTTCAATAGCACATCC 59.548 45.833 0.00 0.54 38.57 3.51
2433 3140 5.057149 ACCGGTCTATTTCAATAGCACATC 58.943 41.667 0.00 0.00 38.57 3.06
2434 3141 5.036117 ACCGGTCTATTTCAATAGCACAT 57.964 39.130 0.00 0.00 38.57 3.21
2435 3142 4.081365 TGACCGGTCTATTTCAATAGCACA 60.081 41.667 33.39 6.76 38.57 4.57
2436 3143 4.439057 TGACCGGTCTATTTCAATAGCAC 58.561 43.478 33.39 3.94 38.57 4.40
2437 3144 4.746535 TGACCGGTCTATTTCAATAGCA 57.253 40.909 33.39 7.93 38.57 3.49
2438 3145 5.116882 ACTTGACCGGTCTATTTCAATAGC 58.883 41.667 33.39 5.11 38.57 2.97
2439 3146 7.119262 ACAAACTTGACCGGTCTATTTCAATAG 59.881 37.037 33.39 18.78 39.75 1.73
2440 3147 6.938030 ACAAACTTGACCGGTCTATTTCAATA 59.062 34.615 33.39 8.80 0.00 1.90
2441 3148 5.768164 ACAAACTTGACCGGTCTATTTCAAT 59.232 36.000 33.39 13.29 0.00 2.57
2442 3149 5.127491 ACAAACTTGACCGGTCTATTTCAA 58.873 37.500 33.39 18.54 0.00 2.69
2443 3150 4.710324 ACAAACTTGACCGGTCTATTTCA 58.290 39.130 33.39 11.86 0.00 2.69
2444 3151 5.164022 CGTACAAACTTGACCGGTCTATTTC 60.164 44.000 33.39 16.98 0.00 2.17
2445 3152 4.687483 CGTACAAACTTGACCGGTCTATTT 59.313 41.667 33.39 25.30 0.00 1.40
2446 3153 4.240096 CGTACAAACTTGACCGGTCTATT 58.760 43.478 33.39 21.50 0.00 1.73
2447 3154 3.367703 CCGTACAAACTTGACCGGTCTAT 60.368 47.826 33.39 17.02 38.85 1.98
2448 3155 2.030007 CCGTACAAACTTGACCGGTCTA 60.030 50.000 33.39 25.77 38.85 2.59
2449 3156 1.269936 CCGTACAAACTTGACCGGTCT 60.270 52.381 33.39 15.30 38.85 3.85
2450 3157 1.142474 CCGTACAAACTTGACCGGTC 58.858 55.000 28.17 28.17 38.85 4.79
2451 3158 0.752054 TCCGTACAAACTTGACCGGT 59.248 50.000 6.92 6.92 41.80 5.28
2452 3159 2.088950 ATCCGTACAAACTTGACCGG 57.911 50.000 0.00 0.00 42.16 5.28
2453 3160 5.594724 TTTAATCCGTACAAACTTGACCG 57.405 39.130 0.00 0.00 0.00 4.79
2454 3161 7.019418 GTCATTTAATCCGTACAAACTTGACC 58.981 38.462 0.00 0.00 0.00 4.02
2455 3162 7.803724 AGTCATTTAATCCGTACAAACTTGAC 58.196 34.615 0.00 0.00 0.00 3.18
2456 3163 7.972832 AGTCATTTAATCCGTACAAACTTGA 57.027 32.000 0.00 0.00 0.00 3.02
2457 3164 7.749126 GGAAGTCATTTAATCCGTACAAACTTG 59.251 37.037 0.00 0.00 0.00 3.16
2458 3165 7.446013 TGGAAGTCATTTAATCCGTACAAACTT 59.554 33.333 0.00 0.00 34.60 2.66
2459 3166 6.938030 TGGAAGTCATTTAATCCGTACAAACT 59.062 34.615 0.00 0.00 34.60 2.66
2460 3167 7.136289 TGGAAGTCATTTAATCCGTACAAAC 57.864 36.000 0.00 0.00 34.60 2.93
2461 3168 7.931578 ATGGAAGTCATTTAATCCGTACAAA 57.068 32.000 0.00 0.00 34.60 2.83
2462 3169 7.931578 AATGGAAGTCATTTAATCCGTACAA 57.068 32.000 0.00 0.00 43.04 2.41
2475 3182 4.080015 TCCCCACGAATAAATGGAAGTCAT 60.080 41.667 0.00 0.00 38.34 3.06
2476 3183 3.264706 TCCCCACGAATAAATGGAAGTCA 59.735 43.478 0.00 0.00 38.34 3.41
2477 3184 3.881220 TCCCCACGAATAAATGGAAGTC 58.119 45.455 0.00 0.00 38.34 3.01
2478 3185 4.519906 ATCCCCACGAATAAATGGAAGT 57.480 40.909 0.00 0.00 38.34 3.01
2479 3186 6.003950 ACATATCCCCACGAATAAATGGAAG 58.996 40.000 0.00 0.00 38.34 3.46
2480 3187 5.767665 CACATATCCCCACGAATAAATGGAA 59.232 40.000 0.00 0.00 38.34 3.53
2481 3188 5.072464 TCACATATCCCCACGAATAAATGGA 59.928 40.000 0.00 0.00 38.34 3.41
2482 3189 5.181245 GTCACATATCCCCACGAATAAATGG 59.819 44.000 0.00 0.00 35.59 3.16
2483 3190 5.762711 TGTCACATATCCCCACGAATAAATG 59.237 40.000 0.00 0.00 0.00 2.32
2484 3191 5.935945 TGTCACATATCCCCACGAATAAAT 58.064 37.500 0.00 0.00 0.00 1.40
2485 3192 5.360649 TGTCACATATCCCCACGAATAAA 57.639 39.130 0.00 0.00 0.00 1.40
2486 3193 5.304778 CATGTCACATATCCCCACGAATAA 58.695 41.667 0.00 0.00 0.00 1.40
2487 3194 4.802583 GCATGTCACATATCCCCACGAATA 60.803 45.833 0.00 0.00 0.00 1.75
2488 3195 3.743521 CATGTCACATATCCCCACGAAT 58.256 45.455 0.00 0.00 0.00 3.34
2489 3196 2.744823 GCATGTCACATATCCCCACGAA 60.745 50.000 0.00 0.00 0.00 3.85
2490 3197 1.202639 GCATGTCACATATCCCCACGA 60.203 52.381 0.00 0.00 0.00 4.35
2491 3198 1.229428 GCATGTCACATATCCCCACG 58.771 55.000 0.00 0.00 0.00 4.94
2492 3199 2.346766 TGCATGTCACATATCCCCAC 57.653 50.000 0.00 0.00 0.00 4.61
2493 3200 4.847198 GATATGCATGTCACATATCCCCA 58.153 43.478 17.64 0.00 45.56 4.96
2510 3217 5.334957 GCAGGCAGATCTTCAACATGATATG 60.335 44.000 0.00 0.00 35.67 1.78
2511 3218 4.760715 GCAGGCAGATCTTCAACATGATAT 59.239 41.667 0.00 0.00 0.00 1.63
2512 3219 4.132336 GCAGGCAGATCTTCAACATGATA 58.868 43.478 0.00 0.00 0.00 2.15
2513 3220 2.950309 GCAGGCAGATCTTCAACATGAT 59.050 45.455 0.00 0.00 0.00 2.45
2514 3221 2.026542 AGCAGGCAGATCTTCAACATGA 60.027 45.455 0.00 0.00 0.00 3.07
2515 3222 2.366533 AGCAGGCAGATCTTCAACATG 58.633 47.619 0.00 0.00 0.00 3.21
2516 3223 2.803030 AGCAGGCAGATCTTCAACAT 57.197 45.000 0.00 0.00 0.00 2.71
2517 3224 2.574006 AAGCAGGCAGATCTTCAACA 57.426 45.000 0.00 0.00 0.00 3.33
2518 3225 2.816087 TGAAAGCAGGCAGATCTTCAAC 59.184 45.455 0.00 0.00 0.00 3.18
2519 3226 3.144657 TGAAAGCAGGCAGATCTTCAA 57.855 42.857 0.00 0.00 0.00 2.69
2520 3227 2.865119 TGAAAGCAGGCAGATCTTCA 57.135 45.000 0.00 0.00 0.00 3.02
2521 3228 3.693085 TCAATGAAAGCAGGCAGATCTTC 59.307 43.478 0.00 0.00 0.00 2.87
2522 3229 3.693807 TCAATGAAAGCAGGCAGATCTT 58.306 40.909 0.00 0.00 0.00 2.40
2523 3230 3.280295 CTCAATGAAAGCAGGCAGATCT 58.720 45.455 0.00 0.00 0.00 2.75
2524 3231 2.223525 GCTCAATGAAAGCAGGCAGATC 60.224 50.000 0.00 0.00 39.61 2.75
2525 3232 1.749634 GCTCAATGAAAGCAGGCAGAT 59.250 47.619 0.00 0.00 39.61 2.90
2526 3233 1.171308 GCTCAATGAAAGCAGGCAGA 58.829 50.000 0.00 0.00 39.61 4.26
2527 3234 0.172803 GGCTCAATGAAAGCAGGCAG 59.827 55.000 0.00 0.00 41.66 4.85
2528 3235 0.540133 TGGCTCAATGAAAGCAGGCA 60.540 50.000 0.00 0.00 41.66 4.75
2529 3236 0.822164 ATGGCTCAATGAAAGCAGGC 59.178 50.000 0.00 0.00 41.66 4.85
2530 3237 4.724074 TTTATGGCTCAATGAAAGCAGG 57.276 40.909 0.00 0.00 41.66 4.85
2550 3257 3.772572 ACTACAAAAGGTGGTGGCTTTTT 59.227 39.130 0.00 0.00 40.04 1.94
2551 3258 3.371034 ACTACAAAAGGTGGTGGCTTTT 58.629 40.909 0.00 0.00 40.04 2.27
2552 3259 3.026707 ACTACAAAAGGTGGTGGCTTT 57.973 42.857 0.00 0.00 40.04 3.51
2553 3260 2.748209 ACTACAAAAGGTGGTGGCTT 57.252 45.000 0.00 0.00 40.04 4.35
2554 3261 2.748209 AACTACAAAAGGTGGTGGCT 57.252 45.000 0.00 0.00 40.75 4.75
2555 3262 6.769134 ATATAAACTACAAAAGGTGGTGGC 57.231 37.500 0.00 0.00 40.75 5.01
2580 3287 9.224267 GCATCCTACACATATTCAGTCATATTT 57.776 33.333 0.00 0.00 0.00 1.40
2581 3288 8.377799 TGCATCCTACACATATTCAGTCATATT 58.622 33.333 0.00 0.00 0.00 1.28
2582 3289 7.821359 GTGCATCCTACACATATTCAGTCATAT 59.179 37.037 0.00 0.00 37.96 1.78
2583 3290 7.154656 GTGCATCCTACACATATTCAGTCATA 58.845 38.462 0.00 0.00 37.96 2.15
2584 3291 5.994054 GTGCATCCTACACATATTCAGTCAT 59.006 40.000 0.00 0.00 37.96 3.06
2585 3292 5.104982 TGTGCATCCTACACATATTCAGTCA 60.105 40.000 0.00 0.00 42.88 3.41
2586 3293 5.359756 TGTGCATCCTACACATATTCAGTC 58.640 41.667 0.00 0.00 42.88 3.51
2587 3294 5.357742 TGTGCATCCTACACATATTCAGT 57.642 39.130 0.00 0.00 42.88 3.41
2596 3303 2.283298 CACCAGATGTGCATCCTACAC 58.717 52.381 8.41 0.00 38.34 2.90
2597 3304 1.210234 CCACCAGATGTGCATCCTACA 59.790 52.381 8.41 0.00 44.01 2.74
2598 3305 1.475751 CCCACCAGATGTGCATCCTAC 60.476 57.143 8.41 0.00 44.01 3.18
2599 3306 0.839277 CCCACCAGATGTGCATCCTA 59.161 55.000 8.41 0.00 44.01 2.94
2600 3307 0.915872 TCCCACCAGATGTGCATCCT 60.916 55.000 8.41 0.00 44.01 3.24
2601 3308 0.465097 CTCCCACCAGATGTGCATCC 60.465 60.000 8.41 0.00 44.01 3.51
2602 3309 0.543277 TCTCCCACCAGATGTGCATC 59.457 55.000 4.12 4.12 44.01 3.91
2603 3310 0.994247 TTCTCCCACCAGATGTGCAT 59.006 50.000 0.00 0.00 44.01 3.96
2604 3311 0.770499 TTTCTCCCACCAGATGTGCA 59.230 50.000 0.00 0.00 44.01 4.57
2605 3312 1.815003 CTTTTCTCCCACCAGATGTGC 59.185 52.381 0.00 0.00 44.01 4.57
2606 3313 2.440409 CCTTTTCTCCCACCAGATGTG 58.560 52.381 0.00 0.00 45.01 3.21
2607 3314 1.355720 CCCTTTTCTCCCACCAGATGT 59.644 52.381 0.00 0.00 0.00 3.06
2608 3315 1.341383 CCCCTTTTCTCCCACCAGATG 60.341 57.143 0.00 0.00 0.00 2.90
2609 3316 1.002857 CCCCTTTTCTCCCACCAGAT 58.997 55.000 0.00 0.00 0.00 2.90
2610 3317 1.140134 CCCCCTTTTCTCCCACCAGA 61.140 60.000 0.00 0.00 0.00 3.86
2611 3318 1.384191 CCCCCTTTTCTCCCACCAG 59.616 63.158 0.00 0.00 0.00 4.00
2612 3319 1.388217 ACCCCCTTTTCTCCCACCA 60.388 57.895 0.00 0.00 0.00 4.17
2613 3320 1.076727 CACCCCCTTTTCTCCCACC 59.923 63.158 0.00 0.00 0.00 4.61
2614 3321 0.187606 AACACCCCCTTTTCTCCCAC 59.812 55.000 0.00 0.00 0.00 4.61
2615 3322 0.187361 CAACACCCCCTTTTCTCCCA 59.813 55.000 0.00 0.00 0.00 4.37
2616 3323 0.187606 ACAACACCCCCTTTTCTCCC 59.812 55.000 0.00 0.00 0.00 4.30
2617 3324 2.963599 TACAACACCCCCTTTTCTCC 57.036 50.000 0.00 0.00 0.00 3.71
2618 3325 3.763057 ACATACAACACCCCCTTTTCTC 58.237 45.455 0.00 0.00 0.00 2.87
2619 3326 3.895041 CAACATACAACACCCCCTTTTCT 59.105 43.478 0.00 0.00 0.00 2.52
2620 3327 3.892588 TCAACATACAACACCCCCTTTTC 59.107 43.478 0.00 0.00 0.00 2.29
2621 3328 3.917300 TCAACATACAACACCCCCTTTT 58.083 40.909 0.00 0.00 0.00 2.27
2622 3329 3.603965 TCAACATACAACACCCCCTTT 57.396 42.857 0.00 0.00 0.00 3.11
2623 3330 3.825908 ATCAACATACAACACCCCCTT 57.174 42.857 0.00 0.00 0.00 3.95
2624 3331 3.697166 GAATCAACATACAACACCCCCT 58.303 45.455 0.00 0.00 0.00 4.79
2625 3332 2.422127 CGAATCAACATACAACACCCCC 59.578 50.000 0.00 0.00 0.00 5.40
2626 3333 3.078837 ACGAATCAACATACAACACCCC 58.921 45.455 0.00 0.00 0.00 4.95
2627 3334 3.749088 TCACGAATCAACATACAACACCC 59.251 43.478 0.00 0.00 0.00 4.61
2628 3335 5.351233 TTCACGAATCAACATACAACACC 57.649 39.130 0.00 0.00 0.00 4.16
2629 3336 6.021596 GGATTCACGAATCAACATACAACAC 58.978 40.000 18.80 0.00 46.77 3.32
2630 3337 5.703130 TGGATTCACGAATCAACATACAACA 59.297 36.000 18.80 4.41 46.77 3.33
2631 3338 6.176975 TGGATTCACGAATCAACATACAAC 57.823 37.500 18.80 2.21 46.77 3.32
2632 3339 6.809630 TTGGATTCACGAATCAACATACAA 57.190 33.333 18.80 10.86 46.77 2.41
2633 3340 7.768582 ACTATTGGATTCACGAATCAACATACA 59.231 33.333 18.80 6.19 46.77 2.29
2634 3341 8.142994 ACTATTGGATTCACGAATCAACATAC 57.857 34.615 18.80 4.00 46.77 2.39
2635 3342 9.996554 ATACTATTGGATTCACGAATCAACATA 57.003 29.630 18.80 11.20 46.77 2.29
2636 3343 8.908786 ATACTATTGGATTCACGAATCAACAT 57.091 30.769 18.80 10.77 46.77 2.71
2637 3344 7.441157 GGATACTATTGGATTCACGAATCAACA 59.559 37.037 18.80 7.99 46.77 3.33
2638 3345 7.797819 GGATACTATTGGATTCACGAATCAAC 58.202 38.462 18.80 5.80 46.77 3.18
2639 3346 7.962964 GGATACTATTGGATTCACGAATCAA 57.037 36.000 18.80 7.35 46.77 2.57
2711 3448 8.263640 ACTATTGGATTGGAGATATATGCAGTC 58.736 37.037 5.90 5.90 0.00 3.51
2973 4322 3.054878 CAGTTTTGCTTGATTGGCAGAC 58.945 45.455 0.00 0.00 40.90 3.51
3070 4422 6.357367 ACCTTGAAAGTCAACAAGTGTATCT 58.643 36.000 0.00 0.00 40.98 1.98
3099 4451 5.221048 CGATGGTTTCTTTGTCCTCTTTTGT 60.221 40.000 0.00 0.00 0.00 2.83
3274 4743 1.241165 CATCAGCCTGCACAGTGAAA 58.759 50.000 4.15 0.00 0.00 2.69
3451 6913 2.065899 TGCCATTAATAAAGCGGGCT 57.934 45.000 12.06 0.00 41.86 5.19
3472 6934 4.584325 ACTACTTACGGAGTGTGGTTGTTA 59.416 41.667 4.20 0.00 45.73 2.41
4036 7507 4.757692 ACTCCTATAGAAAGGGGGATGAG 58.242 47.826 0.00 0.00 41.96 2.90
4041 7512 8.919018 AGATATTTACTCCTATAGAAAGGGGG 57.081 38.462 0.00 0.00 41.96 5.40
4089 7561 5.621193 ACACAACAGCTACTTAACCATTCT 58.379 37.500 0.00 0.00 0.00 2.40
4301 7775 1.877443 GCACGGCTTCTAAAAGTTGGA 59.123 47.619 0.00 0.00 34.79 3.53
4310 7784 0.108329 GTAGCTTGGCACGGCTTCTA 60.108 55.000 17.28 0.00 40.16 2.10
4613 8115 6.182627 AGTCCTTCAACATATTTCTCATGCA 58.817 36.000 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.