Multiple sequence alignment - TraesCS3A01G512200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G512200 chr3A 100.000 2783 0 0 1 2783 731895383 731892601 0.000000e+00 5140.0
1 TraesCS3A01G512200 chr3A 91.598 1452 85 10 939 2378 731844371 731842945 0.000000e+00 1971.0
2 TraesCS3A01G512200 chr3A 80.071 1400 201 46 964 2349 730851623 730850288 0.000000e+00 968.0
3 TraesCS3A01G512200 chr3A 77.893 1158 175 54 1325 2431 730905275 730904148 0.000000e+00 645.0
4 TraesCS3A01G512200 chr3A 89.589 365 37 1 969 1333 730908439 730908076 1.950000e-126 462.0
5 TraesCS3A01G512200 chr3A 87.458 295 22 9 2504 2783 731842955 731842661 2.670000e-85 326.0
6 TraesCS3A01G512200 chr3A 83.453 139 23 0 2582 2720 730850129 730849991 2.250000e-26 130.0
7 TraesCS3A01G512200 chr3D 94.891 1468 57 9 909 2372 602261647 602260194 0.000000e+00 2279.0
8 TraesCS3A01G512200 chr3D 78.916 1328 200 51 952 2253 602235124 602236397 0.000000e+00 828.0
9 TraesCS3A01G512200 chr3D 77.760 1223 194 46 1238 2431 602210864 602212037 0.000000e+00 680.0
10 TraesCS3A01G512200 chr3D 95.968 248 10 0 2536 2783 602260187 602259940 1.200000e-108 403.0
11 TraesCS3A01G512200 chr3D 79.954 434 80 4 1846 2279 597300787 597300361 2.080000e-81 313.0
12 TraesCS3A01G512200 chr3B 86.948 996 92 20 1760 2725 809464312 809463325 0.000000e+00 1085.0
13 TraesCS3A01G512200 chr3B 86.858 662 72 12 969 1618 809237463 809236805 0.000000e+00 726.0
14 TraesCS3A01G512200 chr3B 83.704 810 74 19 1940 2720 809509777 809508997 0.000000e+00 712.0
15 TraesCS3A01G512200 chr3B 86.922 497 59 6 939 1432 809510278 809509785 1.130000e-153 553.0
16 TraesCS3A01G512200 chr3B 91.369 336 26 1 971 1303 809347754 809348089 9.090000e-125 457.0
17 TraesCS3A01G512200 chr5D 87.925 911 81 19 1 908 33673851 33674735 0.000000e+00 1046.0
18 TraesCS3A01G512200 chr7A 78.356 1326 226 38 1022 2309 11230329 11229027 0.000000e+00 802.0
19 TraesCS3A01G512200 chr7A 75.878 854 145 35 1430 2253 11311819 11310997 2.020000e-101 379.0
20 TraesCS3A01G512200 chr7A 79.634 383 59 12 1300 1665 11346222 11345842 9.890000e-65 257.0
21 TraesCS3A01G512200 chr7D 77.159 1204 223 37 1070 2253 11928845 11927674 0.000000e+00 652.0
22 TraesCS3A01G512200 chr7D 79.555 494 77 15 1022 1497 11727506 11727019 5.750000e-87 331.0
23 TraesCS3A01G512200 chr7D 85.816 141 16 3 2113 2253 11705731 11705595 2.230000e-31 147.0
24 TraesCS3A01G512200 chr7B 75.966 1294 248 44 1052 2310 750116588 750115323 2.370000e-170 608.0
25 TraesCS3A01G512200 chr7B 75.111 225 44 9 690 911 587903821 587903606 8.210000e-16 95.3
26 TraesCS3A01G512200 chr4A 75.561 1293 228 51 1050 2288 726107595 726108853 8.710000e-155 556.0
27 TraesCS3A01G512200 chr4A 76.307 861 138 43 1422 2253 726073342 726074165 1.550000e-107 399.0
28 TraesCS3A01G512200 chr4A 77.984 486 82 17 1008 1477 703553966 703554442 5.870000e-72 281.0
29 TraesCS3A01G512200 chr4A 75.775 516 98 19 1744 2248 725864887 725865386 4.630000e-58 235.0
30 TraesCS3A01G512200 chr1D 90.625 256 15 3 654 908 174415964 174416211 5.750000e-87 331.0
31 TraesCS3A01G512200 chr6D 80.247 405 65 10 509 908 797988 798382 9.750000e-75 291.0
32 TraesCS3A01G512200 chr5B 73.466 603 114 25 1723 2309 672823195 672822623 4.730000e-43 185.0
33 TraesCS3A01G512200 chr4D 82.979 94 15 1 815 907 435962504 435962411 1.780000e-12 84.2
34 TraesCS3A01G512200 chr6B 93.182 44 1 2 867 908 289303 289260 2.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G512200 chr3A 731892601 731895383 2782 True 5140.0 5140 100.0000 1 2783 1 chr3A.!!$R1 2782
1 TraesCS3A01G512200 chr3A 731842661 731844371 1710 True 1148.5 1971 89.5280 939 2783 2 chr3A.!!$R4 1844
2 TraesCS3A01G512200 chr3A 730904148 730908439 4291 True 553.5 645 83.7410 969 2431 2 chr3A.!!$R3 1462
3 TraesCS3A01G512200 chr3A 730849991 730851623 1632 True 549.0 968 81.7620 964 2720 2 chr3A.!!$R2 1756
4 TraesCS3A01G512200 chr3D 602259940 602261647 1707 True 1341.0 2279 95.4295 909 2783 2 chr3D.!!$R2 1874
5 TraesCS3A01G512200 chr3D 602235124 602236397 1273 False 828.0 828 78.9160 952 2253 1 chr3D.!!$F2 1301
6 TraesCS3A01G512200 chr3D 602210864 602212037 1173 False 680.0 680 77.7600 1238 2431 1 chr3D.!!$F1 1193
7 TraesCS3A01G512200 chr3B 809463325 809464312 987 True 1085.0 1085 86.9480 1760 2725 1 chr3B.!!$R2 965
8 TraesCS3A01G512200 chr3B 809236805 809237463 658 True 726.0 726 86.8580 969 1618 1 chr3B.!!$R1 649
9 TraesCS3A01G512200 chr3B 809508997 809510278 1281 True 632.5 712 85.3130 939 2720 2 chr3B.!!$R3 1781
10 TraesCS3A01G512200 chr5D 33673851 33674735 884 False 1046.0 1046 87.9250 1 908 1 chr5D.!!$F1 907
11 TraesCS3A01G512200 chr7A 11229027 11230329 1302 True 802.0 802 78.3560 1022 2309 1 chr7A.!!$R1 1287
12 TraesCS3A01G512200 chr7A 11310997 11311819 822 True 379.0 379 75.8780 1430 2253 1 chr7A.!!$R2 823
13 TraesCS3A01G512200 chr7D 11927674 11928845 1171 True 652.0 652 77.1590 1070 2253 1 chr7D.!!$R3 1183
14 TraesCS3A01G512200 chr7B 750115323 750116588 1265 True 608.0 608 75.9660 1052 2310 1 chr7B.!!$R2 1258
15 TraesCS3A01G512200 chr4A 726107595 726108853 1258 False 556.0 556 75.5610 1050 2288 1 chr4A.!!$F4 1238
16 TraesCS3A01G512200 chr4A 726073342 726074165 823 False 399.0 399 76.3070 1422 2253 1 chr4A.!!$F3 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 638 0.032815 TTGTCATCACTTCGGACGCA 59.967 50.0 0.0 0.0 34.32 5.24 F
837 838 0.036765 GCCACGTCTGGTATGGTCAA 60.037 55.0 0.0 0.0 40.17 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 4682 0.251341 CCAACTTGTTCAGGAGGGGG 60.251 60.0 0.0 0.0 0.0 5.40 R
1847 4757 0.401356 TGCTGCTCCATCCTTGTTCA 59.599 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.753262 ATGTCCGAGCCCATAGACAC 59.247 55.000 0.00 0.00 41.69 3.67
30 31 3.044156 AGCCCATAGACACATGACAGAT 58.956 45.455 0.00 0.00 0.00 2.90
32 33 4.080129 AGCCCATAGACACATGACAGATTT 60.080 41.667 0.00 0.00 0.00 2.17
36 37 7.050377 CCCATAGACACATGACAGATTTTAGT 58.950 38.462 0.00 0.00 0.00 2.24
43 44 4.520111 ACATGACAGATTTTAGTGCTTGCA 59.480 37.500 0.00 0.00 0.00 4.08
44 45 5.009911 ACATGACAGATTTTAGTGCTTGCAA 59.990 36.000 0.00 0.00 0.00 4.08
45 46 5.710513 TGACAGATTTTAGTGCTTGCAAT 57.289 34.783 0.00 0.41 0.00 3.56
98 99 0.952497 CTGCTCGAGTGCACCATGTT 60.952 55.000 14.63 0.00 38.12 2.71
120 121 0.251341 GATGCACTTGGACCCTGGTT 60.251 55.000 0.00 0.00 0.00 3.67
125 126 0.923358 ACTTGGACCCTGGTTGACAA 59.077 50.000 0.00 0.00 0.00 3.18
129 130 1.073763 TGGACCCTGGTTGACAATGAG 59.926 52.381 0.00 0.00 0.00 2.90
132 133 1.171308 CCCTGGTTGACAATGAGCTG 58.829 55.000 0.00 0.00 0.00 4.24
137 138 0.242017 GTTGACAATGAGCTGGCACC 59.758 55.000 0.00 0.00 32.72 5.01
143 144 1.274167 CAATGAGCTGGCACCAACAAT 59.726 47.619 0.00 0.00 0.00 2.71
165 166 1.873591 GCAACAGTGATTGAACCGAGT 59.126 47.619 0.00 0.00 0.00 4.18
168 169 1.070758 ACAGTGATTGAACCGAGTGCT 59.929 47.619 0.00 0.00 0.00 4.40
171 172 3.745975 CAGTGATTGAACCGAGTGCTAAA 59.254 43.478 0.00 0.00 0.00 1.85
192 193 6.446781 AAACAATGGCTATTCACTCTGATG 57.553 37.500 0.00 0.00 0.00 3.07
197 198 4.229639 TGGCTATTCACTCTGATGGATCT 58.770 43.478 0.00 0.00 0.00 2.75
213 214 6.272558 TGATGGATCTCCTTTCTCATGATGAT 59.727 38.462 0.00 0.00 36.82 2.45
220 221 6.376299 TCTCCTTTCTCATGATGATTTTGTGG 59.624 38.462 0.00 0.00 0.00 4.17
225 226 7.528996 TTCTCATGATGATTTTGTGGAACTT 57.471 32.000 0.00 0.00 38.04 2.66
226 227 8.634335 TTCTCATGATGATTTTGTGGAACTTA 57.366 30.769 0.00 0.00 38.04 2.24
237 238 2.168936 TGTGGAACTTACGGTGACACTT 59.831 45.455 5.39 0.00 38.04 3.16
282 283 2.510768 AAGCGATACACGAAGGGATC 57.489 50.000 0.00 0.00 45.77 3.36
300 301 0.534203 TCTTCCAAAGTCCGCACACC 60.534 55.000 0.00 0.00 0.00 4.16
313 314 2.094803 CCGCACACCATTATTGCTTTCA 60.095 45.455 0.00 0.00 33.90 2.69
329 330 5.221880 TGCTTTCATCAACAGTTACATTGC 58.778 37.500 0.00 0.00 0.00 3.56
332 333 3.669536 TCATCAACAGTTACATTGCCGA 58.330 40.909 0.00 0.00 0.00 5.54
361 362 5.895636 TGTCATCAACACAAAACAAGAGT 57.104 34.783 0.00 0.00 31.20 3.24
371 372 3.118038 ACAAAACAAGAGTAGGTGCCTCA 60.118 43.478 0.00 0.00 0.00 3.86
378 379 0.409876 AGTAGGTGCCTCACTCTGGA 59.590 55.000 0.00 0.00 34.40 3.86
379 380 0.820871 GTAGGTGCCTCACTCTGGAG 59.179 60.000 0.00 0.00 34.40 3.86
386 387 2.751991 CTCACTCTGGAGGTGTGGT 58.248 57.895 2.58 0.00 39.20 4.16
390 391 1.902508 CACTCTGGAGGTGTGGTACAT 59.097 52.381 0.00 0.00 44.52 2.29
420 421 1.464198 AAGACCAAGAGCACCCCCT 60.464 57.895 0.00 0.00 0.00 4.79
452 453 3.425625 GCAAAAATCAATGTAGACGCGGA 60.426 43.478 12.47 0.00 0.00 5.54
479 480 1.005340 CGTGAAAGAGGATCAGCAGC 58.995 55.000 0.00 0.00 37.82 5.25
502 503 1.032014 GGTGTGCAGGAACAACACAT 58.968 50.000 7.40 0.00 45.39 3.21
507 508 1.242076 GCAGGAACAACACATGAGCT 58.758 50.000 0.00 0.00 0.00 4.09
510 511 3.365364 GCAGGAACAACACATGAGCTTAC 60.365 47.826 0.00 0.00 0.00 2.34
511 512 3.189287 CAGGAACAACACATGAGCTTACC 59.811 47.826 0.00 0.00 0.00 2.85
512 513 3.073062 AGGAACAACACATGAGCTTACCT 59.927 43.478 0.00 0.00 0.00 3.08
513 514 3.189287 GGAACAACACATGAGCTTACCTG 59.811 47.826 0.00 0.00 0.00 4.00
514 515 2.783135 ACAACACATGAGCTTACCTGG 58.217 47.619 0.00 0.00 0.00 4.45
515 516 2.086869 CAACACATGAGCTTACCTGGG 58.913 52.381 0.00 0.00 0.00 4.45
516 517 0.035056 ACACATGAGCTTACCTGGGC 60.035 55.000 0.00 0.00 0.00 5.36
517 518 0.035152 CACATGAGCTTACCTGGGCA 60.035 55.000 0.00 0.00 0.00 5.36
518 519 0.254178 ACATGAGCTTACCTGGGCAG 59.746 55.000 0.00 0.00 0.00 4.85
519 520 1.099879 CATGAGCTTACCTGGGCAGC 61.100 60.000 10.56 10.56 0.00 5.25
520 521 1.277580 ATGAGCTTACCTGGGCAGCT 61.278 55.000 18.76 18.76 46.82 4.24
521 522 2.993853 AGCTTACCTGGGCAGCTC 59.006 61.111 14.37 0.00 39.87 4.09
522 523 2.124529 GCTTACCTGGGCAGCTCC 60.125 66.667 11.13 0.00 0.00 4.70
523 524 2.187946 CTTACCTGGGCAGCTCCG 59.812 66.667 0.00 0.00 34.94 4.63
524 525 4.096003 TTACCTGGGCAGCTCCGC 62.096 66.667 0.00 0.00 34.94 5.54
527 528 4.729918 CCTGGGCAGCTCCGCTTT 62.730 66.667 0.00 0.00 36.40 3.51
528 529 3.437795 CTGGGCAGCTCCGCTTTG 61.438 66.667 0.00 0.00 36.40 2.77
531 532 2.046314 GGCAGCTCCGCTTTGGTA 60.046 61.111 0.00 0.00 36.40 3.25
532 533 2.109126 GGCAGCTCCGCTTTGGTAG 61.109 63.158 0.00 0.00 36.40 3.18
533 534 1.376037 GCAGCTCCGCTTTGGTAGT 60.376 57.895 0.00 0.00 36.40 2.73
534 535 1.639298 GCAGCTCCGCTTTGGTAGTG 61.639 60.000 0.00 0.00 36.40 2.74
540 541 2.171635 CGCTTTGGTAGTGGAAGGC 58.828 57.895 0.00 0.00 0.00 4.35
541 542 0.321653 CGCTTTGGTAGTGGAAGGCT 60.322 55.000 0.00 0.00 0.00 4.58
542 543 1.168714 GCTTTGGTAGTGGAAGGCTG 58.831 55.000 0.00 0.00 0.00 4.85
543 544 1.826385 CTTTGGTAGTGGAAGGCTGG 58.174 55.000 0.00 0.00 0.00 4.85
544 545 1.351017 CTTTGGTAGTGGAAGGCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
545 546 1.668826 TTGGTAGTGGAAGGCTGGAT 58.331 50.000 0.00 0.00 0.00 3.41
546 547 0.911769 TGGTAGTGGAAGGCTGGATG 59.088 55.000 0.00 0.00 0.00 3.51
547 548 1.204146 GGTAGTGGAAGGCTGGATGA 58.796 55.000 0.00 0.00 0.00 2.92
548 549 1.771255 GGTAGTGGAAGGCTGGATGAT 59.229 52.381 0.00 0.00 0.00 2.45
549 550 2.224402 GGTAGTGGAAGGCTGGATGATC 60.224 54.545 0.00 0.00 0.00 2.92
550 551 0.842635 AGTGGAAGGCTGGATGATCC 59.157 55.000 4.05 4.05 36.96 3.36
551 552 0.533755 GTGGAAGGCTGGATGATCCG 60.534 60.000 7.03 3.08 40.17 4.18
552 553 0.982852 TGGAAGGCTGGATGATCCGT 60.983 55.000 7.03 0.00 40.17 4.69
553 554 0.250081 GGAAGGCTGGATGATCCGTC 60.250 60.000 7.03 3.48 40.17 4.79
554 555 0.465705 GAAGGCTGGATGATCCGTCA 59.534 55.000 7.03 0.00 40.17 4.35
555 556 0.467384 AAGGCTGGATGATCCGTCAG 59.533 55.000 7.03 0.00 40.17 3.51
556 557 4.040068 GCTGGATGATCCGTCAGC 57.960 61.111 7.03 6.76 44.34 4.26
561 562 2.997899 GATGATCCGTCAGCCCTTG 58.002 57.895 0.00 0.00 37.87 3.61
562 563 0.465705 GATGATCCGTCAGCCCTTGA 59.534 55.000 0.00 0.00 37.87 3.02
563 564 0.911769 ATGATCCGTCAGCCCTTGAA 59.088 50.000 0.00 0.00 37.61 2.69
564 565 0.250234 TGATCCGTCAGCCCTTGAAG 59.750 55.000 0.00 0.00 37.61 3.02
565 566 1.078143 ATCCGTCAGCCCTTGAAGC 60.078 57.895 0.00 0.00 37.61 3.86
566 567 1.841302 ATCCGTCAGCCCTTGAAGCA 61.841 55.000 0.00 0.00 37.61 3.91
567 568 1.377725 CCGTCAGCCCTTGAAGCAT 60.378 57.895 0.00 0.00 37.61 3.79
568 569 0.107703 CCGTCAGCCCTTGAAGCATA 60.108 55.000 0.00 0.00 37.61 3.14
569 570 1.293924 CGTCAGCCCTTGAAGCATAG 58.706 55.000 0.00 0.00 37.61 2.23
570 571 1.020437 GTCAGCCCTTGAAGCATAGC 58.980 55.000 0.00 0.00 37.61 2.97
571 572 0.620030 TCAGCCCTTGAAGCATAGCA 59.380 50.000 0.00 0.00 31.34 3.49
572 573 1.213678 TCAGCCCTTGAAGCATAGCAT 59.786 47.619 0.00 0.00 31.34 3.79
573 574 1.337071 CAGCCCTTGAAGCATAGCATG 59.663 52.381 0.00 0.00 0.00 4.06
574 575 1.064166 AGCCCTTGAAGCATAGCATGT 60.064 47.619 0.00 0.00 0.00 3.21
575 576 1.336125 GCCCTTGAAGCATAGCATGTC 59.664 52.381 0.00 0.00 0.00 3.06
576 577 1.600957 CCCTTGAAGCATAGCATGTCG 59.399 52.381 0.00 0.00 0.00 4.35
577 578 2.283298 CCTTGAAGCATAGCATGTCGT 58.717 47.619 0.00 0.00 0.00 4.34
578 579 2.031314 CCTTGAAGCATAGCATGTCGTG 59.969 50.000 0.00 0.00 0.00 4.35
579 580 2.671130 TGAAGCATAGCATGTCGTGA 57.329 45.000 0.00 0.00 0.00 4.35
580 581 2.971307 TGAAGCATAGCATGTCGTGAA 58.029 42.857 0.00 0.00 0.00 3.18
581 582 2.931969 TGAAGCATAGCATGTCGTGAAG 59.068 45.455 0.00 0.00 0.00 3.02
582 583 1.945387 AGCATAGCATGTCGTGAAGG 58.055 50.000 0.00 0.00 0.00 3.46
583 584 1.482182 AGCATAGCATGTCGTGAAGGA 59.518 47.619 0.00 0.00 0.00 3.36
584 585 2.103771 AGCATAGCATGTCGTGAAGGAT 59.896 45.455 0.00 0.00 0.00 3.24
585 586 2.874701 GCATAGCATGTCGTGAAGGATT 59.125 45.455 0.00 0.00 0.00 3.01
586 587 3.303593 GCATAGCATGTCGTGAAGGATTG 60.304 47.826 0.00 0.00 0.00 2.67
587 588 1.742761 AGCATGTCGTGAAGGATTGG 58.257 50.000 0.00 0.00 0.00 3.16
588 589 0.099436 GCATGTCGTGAAGGATTGGC 59.901 55.000 0.00 0.00 0.00 4.52
589 590 0.374758 CATGTCGTGAAGGATTGGCG 59.625 55.000 0.00 0.00 0.00 5.69
590 591 1.369091 ATGTCGTGAAGGATTGGCGC 61.369 55.000 0.00 0.00 0.00 6.53
591 592 1.741770 GTCGTGAAGGATTGGCGCT 60.742 57.895 7.64 0.00 0.00 5.92
592 593 0.459585 GTCGTGAAGGATTGGCGCTA 60.460 55.000 7.64 0.00 0.00 4.26
593 594 0.179111 TCGTGAAGGATTGGCGCTAG 60.179 55.000 7.64 0.00 0.00 3.42
594 595 1.766143 CGTGAAGGATTGGCGCTAGC 61.766 60.000 7.64 4.06 44.18 3.42
606 607 3.133014 GCTAGCAGCGGATCTCCA 58.867 61.111 10.63 0.00 35.14 3.86
607 608 1.670590 GCTAGCAGCGGATCTCCAT 59.329 57.895 10.63 0.00 35.14 3.41
608 609 0.034616 GCTAGCAGCGGATCTCCATT 59.965 55.000 10.63 0.00 35.14 3.16
609 610 1.542108 GCTAGCAGCGGATCTCCATTT 60.542 52.381 10.63 0.00 35.14 2.32
610 611 2.289072 GCTAGCAGCGGATCTCCATTTA 60.289 50.000 10.63 0.00 35.14 1.40
611 612 3.803715 GCTAGCAGCGGATCTCCATTTAA 60.804 47.826 10.63 0.00 35.14 1.52
612 613 3.281727 AGCAGCGGATCTCCATTTAAA 57.718 42.857 0.00 0.00 35.14 1.52
613 614 2.945668 AGCAGCGGATCTCCATTTAAAC 59.054 45.455 0.00 0.00 35.14 2.01
614 615 2.033424 GCAGCGGATCTCCATTTAAACC 59.967 50.000 0.00 0.00 35.14 3.27
615 616 3.278574 CAGCGGATCTCCATTTAAACCA 58.721 45.455 0.00 0.00 35.14 3.67
616 617 3.313526 CAGCGGATCTCCATTTAAACCAG 59.686 47.826 0.00 0.00 35.14 4.00
617 618 3.054361 AGCGGATCTCCATTTAAACCAGT 60.054 43.478 0.00 0.00 35.14 4.00
618 619 3.694566 GCGGATCTCCATTTAAACCAGTT 59.305 43.478 0.00 0.00 35.14 3.16
619 620 4.157840 GCGGATCTCCATTTAAACCAGTTT 59.842 41.667 0.86 0.86 34.58 2.66
620 621 5.640732 CGGATCTCCATTTAAACCAGTTTG 58.359 41.667 6.03 0.00 33.13 2.93
621 622 5.183140 CGGATCTCCATTTAAACCAGTTTGT 59.817 40.000 6.03 0.00 33.13 2.83
622 623 6.621613 GGATCTCCATTTAAACCAGTTTGTC 58.378 40.000 6.03 0.00 33.48 3.18
623 624 6.208599 GGATCTCCATTTAAACCAGTTTGTCA 59.791 38.462 6.03 0.00 33.48 3.58
624 625 7.093771 GGATCTCCATTTAAACCAGTTTGTCAT 60.094 37.037 6.03 0.00 33.48 3.06
625 626 7.214467 TCTCCATTTAAACCAGTTTGTCATC 57.786 36.000 6.03 0.00 34.23 2.92
626 627 6.775142 TCTCCATTTAAACCAGTTTGTCATCA 59.225 34.615 6.03 0.00 34.23 3.07
627 628 6.744112 TCCATTTAAACCAGTTTGTCATCAC 58.256 36.000 6.03 0.00 34.23 3.06
628 629 6.549364 TCCATTTAAACCAGTTTGTCATCACT 59.451 34.615 6.03 0.00 34.23 3.41
629 630 7.069331 TCCATTTAAACCAGTTTGTCATCACTT 59.931 33.333 6.03 0.00 34.23 3.16
630 631 7.382218 CCATTTAAACCAGTTTGTCATCACTTC 59.618 37.037 6.03 0.00 34.23 3.01
631 632 4.552166 AAACCAGTTTGTCATCACTTCG 57.448 40.909 0.00 0.00 0.00 3.79
632 633 2.494059 ACCAGTTTGTCATCACTTCGG 58.506 47.619 0.00 0.00 0.00 4.30
633 634 2.104111 ACCAGTTTGTCATCACTTCGGA 59.896 45.455 0.00 0.00 0.00 4.55
634 635 2.480419 CCAGTTTGTCATCACTTCGGAC 59.520 50.000 0.00 0.00 0.00 4.79
635 636 2.155732 CAGTTTGTCATCACTTCGGACG 59.844 50.000 0.00 0.00 34.32 4.79
636 637 1.136336 GTTTGTCATCACTTCGGACGC 60.136 52.381 0.00 0.00 34.32 5.19
637 638 0.032815 TTGTCATCACTTCGGACGCA 59.967 50.000 0.00 0.00 34.32 5.24
638 639 0.666274 TGTCATCACTTCGGACGCAC 60.666 55.000 0.00 0.00 34.32 5.34
639 640 0.666274 GTCATCACTTCGGACGCACA 60.666 55.000 0.00 0.00 0.00 4.57
640 641 0.388520 TCATCACTTCGGACGCACAG 60.389 55.000 0.00 0.00 0.00 3.66
641 642 0.388520 CATCACTTCGGACGCACAGA 60.389 55.000 0.00 0.00 0.00 3.41
642 643 0.388649 ATCACTTCGGACGCACAGAC 60.389 55.000 0.00 0.00 0.00 3.51
643 644 2.050351 ACTTCGGACGCACAGACG 60.050 61.111 0.00 0.00 39.50 4.18
644 645 2.805353 CTTCGGACGCACAGACGG 60.805 66.667 0.00 0.00 37.37 4.79
645 646 3.553437 CTTCGGACGCACAGACGGT 62.553 63.158 0.00 0.00 37.37 4.83
653 654 4.343581 CACAGACGGTGGTGAGTG 57.656 61.111 4.04 0.00 44.04 3.51
654 655 1.956170 CACAGACGGTGGTGAGTGC 60.956 63.158 4.04 0.00 44.04 4.40
655 656 2.421314 CAGACGGTGGTGAGTGCA 59.579 61.111 0.00 0.00 0.00 4.57
656 657 1.227527 CAGACGGTGGTGAGTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
657 658 0.603707 CAGACGGTGGTGAGTGCAAT 60.604 55.000 0.00 0.00 0.00 3.56
658 659 0.320771 AGACGGTGGTGAGTGCAATC 60.321 55.000 7.33 7.33 0.00 2.67
659 660 0.602638 GACGGTGGTGAGTGCAATCA 60.603 55.000 13.76 13.76 0.00 2.57
660 661 0.179032 ACGGTGGTGAGTGCAATCAA 60.179 50.000 19.78 0.60 0.00 2.57
661 662 0.238289 CGGTGGTGAGTGCAATCAAC 59.762 55.000 24.65 24.65 37.42 3.18
662 663 1.317613 GGTGGTGAGTGCAATCAACA 58.682 50.000 29.52 29.52 44.52 3.33
665 666 1.955778 TGGTGAGTGCAATCAACAAGG 59.044 47.619 30.85 0.00 43.78 3.61
666 667 1.270550 GGTGAGTGCAATCAACAAGGG 59.729 52.381 26.23 0.00 36.86 3.95
667 668 0.961019 TGAGTGCAATCAACAAGGGC 59.039 50.000 15.56 0.00 0.00 5.19
668 669 0.961019 GAGTGCAATCAACAAGGGCA 59.039 50.000 9.72 0.00 0.00 5.36
669 670 0.963962 AGTGCAATCAACAAGGGCAG 59.036 50.000 0.00 0.00 34.78 4.85
670 671 0.668401 GTGCAATCAACAAGGGCAGC 60.668 55.000 0.00 0.00 34.78 5.25
671 672 0.828762 TGCAATCAACAAGGGCAGCT 60.829 50.000 0.00 0.00 0.00 4.24
672 673 0.319405 GCAATCAACAAGGGCAGCTT 59.681 50.000 0.00 0.00 0.00 3.74
673 674 1.545582 GCAATCAACAAGGGCAGCTTA 59.454 47.619 0.00 0.00 0.00 3.09
674 675 2.416431 GCAATCAACAAGGGCAGCTTAG 60.416 50.000 0.00 0.00 0.00 2.18
675 676 2.134789 ATCAACAAGGGCAGCTTAGG 57.865 50.000 0.00 0.00 0.00 2.69
676 677 0.609131 TCAACAAGGGCAGCTTAGGC 60.609 55.000 0.00 0.00 39.06 3.93
677 678 0.895100 CAACAAGGGCAGCTTAGGCA 60.895 55.000 0.00 0.00 41.70 4.75
678 679 0.895559 AACAAGGGCAGCTTAGGCAC 60.896 55.000 0.00 0.00 41.70 5.01
679 680 1.303561 CAAGGGCAGCTTAGGCACA 60.304 57.895 0.00 0.00 41.70 4.57
680 681 0.682209 CAAGGGCAGCTTAGGCACAT 60.682 55.000 0.00 0.00 41.70 3.21
681 682 0.040204 AAGGGCAGCTTAGGCACATT 59.960 50.000 0.00 0.00 41.70 2.71
682 683 0.040204 AGGGCAGCTTAGGCACATTT 59.960 50.000 0.00 0.00 41.70 2.32
683 684 0.174162 GGGCAGCTTAGGCACATTTG 59.826 55.000 0.00 0.00 41.70 2.32
684 685 0.174162 GGCAGCTTAGGCACATTTGG 59.826 55.000 0.00 0.00 41.70 3.28
685 686 0.890683 GCAGCTTAGGCACATTTGGT 59.109 50.000 0.00 0.00 41.70 3.67
700 701 7.598189 CACATTTGGTGCAATTATCAATGAA 57.402 32.000 0.00 0.00 41.36 2.57
701 702 8.030744 CACATTTGGTGCAATTATCAATGAAA 57.969 30.769 0.00 0.00 41.36 2.69
702 703 8.670135 CACATTTGGTGCAATTATCAATGAAAT 58.330 29.630 0.00 0.00 41.36 2.17
703 704 9.887629 ACATTTGGTGCAATTATCAATGAAATA 57.112 25.926 0.00 0.00 0.00 1.40
708 709 9.941325 TGGTGCAATTATCAATGAAATAAAACT 57.059 25.926 0.00 0.00 0.00 2.66
729 730 9.472361 AAAACTTCAATCAGAGTCATTTCAATG 57.528 29.630 0.00 0.00 37.75 2.82
730 731 7.756395 ACTTCAATCAGAGTCATTTCAATGT 57.244 32.000 0.00 0.00 37.65 2.71
731 732 8.853077 ACTTCAATCAGAGTCATTTCAATGTA 57.147 30.769 0.00 0.00 37.65 2.29
732 733 9.288576 ACTTCAATCAGAGTCATTTCAATGTAA 57.711 29.630 0.00 0.00 37.65 2.41
739 740 9.897744 TCAGAGTCATTTCAATGTAATTTTGTC 57.102 29.630 0.00 0.00 37.65 3.18
740 741 9.903682 CAGAGTCATTTCAATGTAATTTTGTCT 57.096 29.630 0.00 0.00 37.65 3.41
748 749 9.883142 TTTCAATGTAATTTTGTCTTTGAAGGT 57.117 25.926 0.00 0.00 36.94 3.50
749 750 9.528018 TTCAATGTAATTTTGTCTTTGAAGGTC 57.472 29.630 0.00 0.00 31.22 3.85
750 751 7.860373 TCAATGTAATTTTGTCTTTGAAGGTCG 59.140 33.333 0.00 0.00 31.22 4.79
751 752 6.687081 TGTAATTTTGTCTTTGAAGGTCGT 57.313 33.333 0.00 0.00 0.00 4.34
752 753 6.491394 TGTAATTTTGTCTTTGAAGGTCGTG 58.509 36.000 0.00 0.00 0.00 4.35
753 754 3.414549 TTTTGTCTTTGAAGGTCGTGC 57.585 42.857 0.00 0.00 0.00 5.34
754 755 1.305201 TTGTCTTTGAAGGTCGTGCC 58.695 50.000 0.00 0.00 37.58 5.01
764 765 0.541863 AGGTCGTGCCTCCAATAAGG 59.458 55.000 0.00 0.00 46.96 2.69
765 766 0.539986 GGTCGTGCCTCCAATAAGGA 59.460 55.000 0.00 0.00 46.75 3.36
766 767 3.422054 AGGTCGTGCCTCCAATAAGGAA 61.422 50.000 0.00 0.00 46.96 3.36
767 768 5.257703 AGGTCGTGCCTCCAATAAGGAAG 62.258 52.174 0.00 0.00 46.96 3.46
777 778 5.957771 TCCAATAAGGAAGCACATAGTCT 57.042 39.130 0.00 0.00 45.65 3.24
779 780 7.055667 TCCAATAAGGAAGCACATAGTCTAG 57.944 40.000 0.00 0.00 45.65 2.43
780 781 5.698545 CCAATAAGGAAGCACATAGTCTAGC 59.301 44.000 0.00 0.00 41.22 3.42
781 782 3.828875 AAGGAAGCACATAGTCTAGCC 57.171 47.619 0.00 0.00 0.00 3.93
782 783 2.752030 AGGAAGCACATAGTCTAGCCA 58.248 47.619 0.00 0.00 0.00 4.75
783 784 3.107601 AGGAAGCACATAGTCTAGCCAA 58.892 45.455 0.00 0.00 0.00 4.52
784 785 3.519510 AGGAAGCACATAGTCTAGCCAAA 59.480 43.478 0.00 0.00 0.00 3.28
785 786 3.623510 GGAAGCACATAGTCTAGCCAAAC 59.376 47.826 0.00 0.00 0.00 2.93
786 787 3.981071 AGCACATAGTCTAGCCAAACA 57.019 42.857 0.00 0.00 0.00 2.83
787 788 4.286297 AGCACATAGTCTAGCCAAACAA 57.714 40.909 0.00 0.00 0.00 2.83
788 789 4.848357 AGCACATAGTCTAGCCAAACAAT 58.152 39.130 0.00 0.00 0.00 2.71
789 790 4.878397 AGCACATAGTCTAGCCAAACAATC 59.122 41.667 0.00 0.00 0.00 2.67
790 791 4.878397 GCACATAGTCTAGCCAAACAATCT 59.122 41.667 0.00 0.00 0.00 2.40
791 792 5.007136 GCACATAGTCTAGCCAAACAATCTC 59.993 44.000 0.00 0.00 0.00 2.75
792 793 6.344500 CACATAGTCTAGCCAAACAATCTCT 58.656 40.000 0.00 0.00 0.00 3.10
793 794 6.478344 CACATAGTCTAGCCAAACAATCTCTC 59.522 42.308 0.00 0.00 0.00 3.20
794 795 4.479786 AGTCTAGCCAAACAATCTCTCC 57.520 45.455 0.00 0.00 0.00 3.71
795 796 4.100373 AGTCTAGCCAAACAATCTCTCCT 58.900 43.478 0.00 0.00 0.00 3.69
796 797 4.534103 AGTCTAGCCAAACAATCTCTCCTT 59.466 41.667 0.00 0.00 0.00 3.36
797 798 4.873259 GTCTAGCCAAACAATCTCTCCTTC 59.127 45.833 0.00 0.00 0.00 3.46
798 799 4.780021 TCTAGCCAAACAATCTCTCCTTCT 59.220 41.667 0.00 0.00 0.00 2.85
799 800 5.958380 TCTAGCCAAACAATCTCTCCTTCTA 59.042 40.000 0.00 0.00 0.00 2.10
800 801 5.096443 AGCCAAACAATCTCTCCTTCTAG 57.904 43.478 0.00 0.00 0.00 2.43
801 802 4.780021 AGCCAAACAATCTCTCCTTCTAGA 59.220 41.667 0.00 0.00 0.00 2.43
802 803 5.428131 AGCCAAACAATCTCTCCTTCTAGAT 59.572 40.000 0.00 0.00 33.87 1.98
803 804 5.757808 GCCAAACAATCTCTCCTTCTAGATC 59.242 44.000 0.00 0.00 31.20 2.75
804 805 6.287525 CCAAACAATCTCTCCTTCTAGATCC 58.712 44.000 0.00 0.00 31.20 3.36
805 806 6.126940 CCAAACAATCTCTCCTTCTAGATCCA 60.127 42.308 0.00 0.00 31.20 3.41
806 807 6.729690 AACAATCTCTCCTTCTAGATCCAG 57.270 41.667 0.00 0.00 31.20 3.86
807 808 5.147032 ACAATCTCTCCTTCTAGATCCAGG 58.853 45.833 2.89 2.89 31.20 4.45
808 809 5.103301 ACAATCTCTCCTTCTAGATCCAGGA 60.103 44.000 10.59 10.59 35.32 3.86
809 810 4.447138 TCTCTCCTTCTAGATCCAGGAC 57.553 50.000 7.46 0.00 32.96 3.85
810 811 4.051478 TCTCTCCTTCTAGATCCAGGACT 58.949 47.826 7.46 0.00 32.96 3.85
811 812 4.104102 TCTCTCCTTCTAGATCCAGGACTC 59.896 50.000 7.46 0.00 32.96 3.36
812 813 3.139397 TCTCCTTCTAGATCCAGGACTCC 59.861 52.174 7.46 0.00 32.96 3.85
813 814 2.859404 TCCTTCTAGATCCAGGACTCCA 59.141 50.000 7.46 0.00 31.33 3.86
814 815 3.117322 TCCTTCTAGATCCAGGACTCCAG 60.117 52.174 7.46 0.00 31.33 3.86
815 816 3.230134 CTTCTAGATCCAGGACTCCAGG 58.770 54.545 0.00 0.00 0.00 4.45
816 817 1.501170 TCTAGATCCAGGACTCCAGGG 59.499 57.143 6.67 3.32 30.56 4.45
817 818 0.105453 TAGATCCAGGACTCCAGGGC 60.105 60.000 6.67 0.30 30.56 5.19
818 819 2.765807 ATCCAGGACTCCAGGGCG 60.766 66.667 6.67 0.00 30.56 6.13
831 832 4.157120 GGGCGCCACGTCTGGTAT 62.157 66.667 30.85 0.00 40.17 2.73
832 833 2.890474 GGCGCCACGTCTGGTATG 60.890 66.667 24.80 0.00 40.17 2.39
833 834 2.890474 GCGCCACGTCTGGTATGG 60.890 66.667 0.00 0.00 40.17 2.74
834 835 2.577059 CGCCACGTCTGGTATGGT 59.423 61.111 0.00 0.00 40.17 3.55
835 836 1.518572 CGCCACGTCTGGTATGGTC 60.519 63.158 0.00 0.00 40.17 4.02
836 837 1.594833 GCCACGTCTGGTATGGTCA 59.405 57.895 0.00 0.00 40.17 4.02
837 838 0.036765 GCCACGTCTGGTATGGTCAA 60.037 55.000 0.00 0.00 40.17 3.18
838 839 1.722011 CCACGTCTGGTATGGTCAAC 58.278 55.000 0.00 0.00 32.03 3.18
839 840 1.674817 CCACGTCTGGTATGGTCAACC 60.675 57.143 0.00 0.00 37.53 3.77
840 841 0.611714 ACGTCTGGTATGGTCAACCC 59.388 55.000 0.00 0.00 36.06 4.11
841 842 0.107848 CGTCTGGTATGGTCAACCCC 60.108 60.000 0.00 0.00 36.06 4.95
842 843 0.107848 GTCTGGTATGGTCAACCCCG 60.108 60.000 0.00 0.00 36.06 5.73
843 844 0.545787 TCTGGTATGGTCAACCCCGT 60.546 55.000 0.00 0.00 36.06 5.28
844 845 0.392461 CTGGTATGGTCAACCCCGTG 60.392 60.000 0.00 0.00 36.06 4.94
845 846 0.836830 TGGTATGGTCAACCCCGTGA 60.837 55.000 0.00 0.00 36.06 4.35
846 847 0.392060 GGTATGGTCAACCCCGTGAC 60.392 60.000 0.00 0.00 45.99 3.67
850 851 2.418356 GTCAACCCCGTGACGTGA 59.582 61.111 3.64 0.00 38.68 4.35
851 852 1.227321 GTCAACCCCGTGACGTGAA 60.227 57.895 3.64 0.00 38.68 3.18
852 853 1.227321 TCAACCCCGTGACGTGAAC 60.227 57.895 3.64 0.00 0.00 3.18
853 854 1.227438 CAACCCCGTGACGTGAACT 60.227 57.895 3.64 0.00 0.00 3.01
854 855 1.227438 AACCCCGTGACGTGAACTG 60.227 57.895 3.64 0.00 0.00 3.16
855 856 1.963464 AACCCCGTGACGTGAACTGT 61.963 55.000 3.64 0.00 0.00 3.55
856 857 1.108727 ACCCCGTGACGTGAACTGTA 61.109 55.000 3.64 0.00 0.00 2.74
857 858 0.245539 CCCCGTGACGTGAACTGTAT 59.754 55.000 3.64 0.00 0.00 2.29
858 859 1.625616 CCCGTGACGTGAACTGTATC 58.374 55.000 3.64 0.00 0.00 2.24
859 860 1.625616 CCGTGACGTGAACTGTATCC 58.374 55.000 3.64 0.00 0.00 2.59
860 861 1.068125 CCGTGACGTGAACTGTATCCA 60.068 52.381 3.64 0.00 0.00 3.41
861 862 2.608506 CCGTGACGTGAACTGTATCCAA 60.609 50.000 3.64 0.00 0.00 3.53
862 863 2.407361 CGTGACGTGAACTGTATCCAAC 59.593 50.000 0.00 0.00 0.00 3.77
863 864 3.386486 GTGACGTGAACTGTATCCAACA 58.614 45.455 0.00 0.00 36.42 3.33
864 865 3.183775 GTGACGTGAACTGTATCCAACAC 59.816 47.826 0.00 0.00 33.45 3.32
865 866 3.181474 TGACGTGAACTGTATCCAACACA 60.181 43.478 0.00 0.00 33.45 3.72
866 867 3.799366 ACGTGAACTGTATCCAACACAA 58.201 40.909 0.00 0.00 33.45 3.33
867 868 4.385825 ACGTGAACTGTATCCAACACAAT 58.614 39.130 0.00 0.00 33.45 2.71
868 869 4.213270 ACGTGAACTGTATCCAACACAATG 59.787 41.667 0.00 0.00 33.45 2.82
869 870 4.213270 CGTGAACTGTATCCAACACAATGT 59.787 41.667 0.00 0.00 33.45 2.71
870 871 5.451908 GTGAACTGTATCCAACACAATGTG 58.548 41.667 12.40 12.40 39.75 3.21
871 872 4.518590 TGAACTGTATCCAACACAATGTGG 59.481 41.667 18.37 0.00 37.94 4.17
872 873 4.098914 ACTGTATCCAACACAATGTGGT 57.901 40.909 18.37 8.51 37.94 4.16
886 887 7.943413 CACAATGTGGTGTTTGATGAATAAA 57.057 32.000 5.29 0.00 34.09 1.40
887 888 8.009984 CACAATGTGGTGTTTGATGAATAAAG 57.990 34.615 5.29 0.00 34.09 1.85
888 889 7.652909 CACAATGTGGTGTTTGATGAATAAAGT 59.347 33.333 5.29 0.00 34.09 2.66
889 890 8.203485 ACAATGTGGTGTTTGATGAATAAAGTT 58.797 29.630 0.00 0.00 0.00 2.66
890 891 9.044150 CAATGTGGTGTTTGATGAATAAAGTTT 57.956 29.630 0.00 0.00 0.00 2.66
891 892 8.592105 ATGTGGTGTTTGATGAATAAAGTTTG 57.408 30.769 0.00 0.00 0.00 2.93
892 893 6.983307 TGTGGTGTTTGATGAATAAAGTTTGG 59.017 34.615 0.00 0.00 0.00 3.28
893 894 5.988561 TGGTGTTTGATGAATAAAGTTTGGC 59.011 36.000 0.00 0.00 0.00 4.52
894 895 6.183360 TGGTGTTTGATGAATAAAGTTTGGCT 60.183 34.615 0.00 0.00 0.00 4.75
895 896 6.705825 GGTGTTTGATGAATAAAGTTTGGCTT 59.294 34.615 0.00 0.00 39.52 4.35
896 897 7.870445 GGTGTTTGATGAATAAAGTTTGGCTTA 59.130 33.333 0.00 0.00 36.17 3.09
897 898 8.699749 GTGTTTGATGAATAAAGTTTGGCTTAC 58.300 33.333 0.00 0.00 36.17 2.34
898 899 7.870445 TGTTTGATGAATAAAGTTTGGCTTACC 59.130 33.333 0.00 0.00 36.17 2.85
899 900 6.524101 TGATGAATAAAGTTTGGCTTACCC 57.476 37.500 0.00 0.00 36.17 3.69
900 901 6.252995 TGATGAATAAAGTTTGGCTTACCCT 58.747 36.000 0.00 0.00 36.17 4.34
901 902 7.406916 TGATGAATAAAGTTTGGCTTACCCTA 58.593 34.615 0.00 0.00 36.17 3.53
902 903 7.891183 TGATGAATAAAGTTTGGCTTACCCTAA 59.109 33.333 0.00 0.00 36.17 2.69
903 904 8.658840 ATGAATAAAGTTTGGCTTACCCTAAA 57.341 30.769 0.00 0.00 36.17 1.85
904 905 8.480133 TGAATAAAGTTTGGCTTACCCTAAAA 57.520 30.769 0.00 0.00 36.17 1.52
905 906 8.925338 TGAATAAAGTTTGGCTTACCCTAAAAA 58.075 29.630 0.00 0.00 36.17 1.94
940 941 8.940952 TCCCCGCTCAAAAATAAAATAAAATTG 58.059 29.630 0.00 0.00 0.00 2.32
1411 4266 2.510918 GCAGCTCTCATCTGCGCA 60.511 61.111 10.98 10.98 45.99 6.09
1578 4450 2.127869 CGGCGAGGATGAGGAGGAA 61.128 63.158 0.00 0.00 0.00 3.36
1621 4495 0.387622 CTTGGTGCAATGCAGAACGG 60.388 55.000 8.73 0.00 40.08 4.44
1696 4579 1.079543 GATCTGTGGAGTGCTGCGT 60.080 57.895 0.00 0.00 0.00 5.24
1698 4581 1.539560 ATCTGTGGAGTGCTGCGTCT 61.540 55.000 0.00 0.00 0.00 4.18
1846 4756 1.418637 TGTCAACCTACCACCTGAACC 59.581 52.381 0.00 0.00 0.00 3.62
1847 4757 1.697982 GTCAACCTACCACCTGAACCT 59.302 52.381 0.00 0.00 0.00 3.50
1848 4758 1.697432 TCAACCTACCACCTGAACCTG 59.303 52.381 0.00 0.00 0.00 4.00
1849 4759 1.697432 CAACCTACCACCTGAACCTGA 59.303 52.381 0.00 0.00 0.00 3.86
1850 4760 2.105821 CAACCTACCACCTGAACCTGAA 59.894 50.000 0.00 0.00 0.00 3.02
1851 4761 1.697982 ACCTACCACCTGAACCTGAAC 59.302 52.381 0.00 0.00 0.00 3.18
1916 4832 0.393402 TGCTTGGAATGCTCGCTGAT 60.393 50.000 0.00 0.00 37.94 2.90
2092 5017 4.743057 TGTACATCACATCTTCTGGAGG 57.257 45.455 0.00 0.00 30.04 4.30
2151 5076 2.198406 CGTTTCAGGTCGAGTTGTTCA 58.802 47.619 0.00 0.00 0.00 3.18
2381 5426 3.193903 ACGGTTAATTATTGTTGGTGGGC 59.806 43.478 0.00 0.00 0.00 5.36
2433 5478 2.309613 TGTGCAATTGGAAGCTCAGTT 58.690 42.857 7.72 0.00 31.49 3.16
2434 5479 2.694628 TGTGCAATTGGAAGCTCAGTTT 59.305 40.909 7.72 0.00 31.49 2.66
2435 5480 3.054878 GTGCAATTGGAAGCTCAGTTTG 58.945 45.455 7.72 0.00 0.00 2.93
2436 5481 2.957680 TGCAATTGGAAGCTCAGTTTGA 59.042 40.909 7.72 0.00 0.00 2.69
2443 5503 9.459640 CAATTGGAAGCTCAGTTTGATATATTG 57.540 33.333 0.00 0.00 0.00 1.90
2469 5529 9.353999 GATTTGTTATCACCATTTTGAGGTTAC 57.646 33.333 0.00 0.00 37.23 2.50
2475 5535 4.040706 TCACCATTTTGAGGTTACCGTACT 59.959 41.667 0.00 0.00 37.23 2.73
2546 5627 4.400567 CCCCCTTGCTCTTGAAATTTCTAG 59.599 45.833 19.69 19.69 0.00 2.43
2600 5695 8.472007 TCCTTCATTTTTATGTGTAACCTGTT 57.528 30.769 0.00 0.00 34.36 3.16
2631 5726 6.975772 GTCGAAATCATCTAACTAGAACAGCT 59.024 38.462 0.00 0.00 35.69 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.136891 TGTCATGTGTCTATGGGCTCG 59.863 52.381 0.00 0.00 0.00 5.03
21 22 5.050644 TGCAAGCACTAAAATCTGTCATG 57.949 39.130 0.00 0.00 0.00 3.07
43 44 1.537202 GTCTCAAGCTCCGCACAAATT 59.463 47.619 0.00 0.00 0.00 1.82
44 45 1.160137 GTCTCAAGCTCCGCACAAAT 58.840 50.000 0.00 0.00 0.00 2.32
45 46 0.106708 AGTCTCAAGCTCCGCACAAA 59.893 50.000 0.00 0.00 0.00 2.83
57 58 3.761218 GAGAGTGTCTCCATGAGTCTCAA 59.239 47.826 6.64 0.00 37.55 3.02
58 59 3.010027 AGAGAGTGTCTCCATGAGTCTCA 59.990 47.826 15.05 4.68 44.42 3.27
59 60 3.378112 CAGAGAGTGTCTCCATGAGTCTC 59.622 52.174 7.72 7.72 44.42 3.36
98 99 0.321564 CAGGGTCCAAGTGCATCGAA 60.322 55.000 0.00 0.00 0.00 3.71
120 121 0.178995 TTGGTGCCAGCTCATTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
125 126 0.892755 CATTGTTGGTGCCAGCTCAT 59.107 50.000 6.62 0.00 0.00 2.90
129 130 2.047939 GCCATTGTTGGTGCCAGC 60.048 61.111 0.00 0.00 45.57 4.85
132 133 0.600782 CTGTTGCCATTGTTGGTGCC 60.601 55.000 0.00 0.00 45.57 5.01
137 138 3.979948 TCAATCACTGTTGCCATTGTTG 58.020 40.909 0.00 0.00 0.00 3.33
143 144 0.950836 CGGTTCAATCACTGTTGCCA 59.049 50.000 0.00 0.00 0.00 4.92
155 156 3.252215 CCATTGTTTAGCACTCGGTTCAA 59.748 43.478 0.00 0.00 0.00 2.69
165 166 5.355071 CAGAGTGAATAGCCATTGTTTAGCA 59.645 40.000 0.00 0.00 0.00 3.49
168 169 6.543465 CCATCAGAGTGAATAGCCATTGTTTA 59.457 38.462 0.00 0.00 0.00 2.01
171 172 4.164796 TCCATCAGAGTGAATAGCCATTGT 59.835 41.667 0.00 0.00 0.00 2.71
192 193 7.284944 ACAAAATCATCATGAGAAAGGAGATCC 59.715 37.037 0.09 0.00 0.00 3.36
197 198 6.247676 TCCACAAAATCATCATGAGAAAGGA 58.752 36.000 0.09 0.00 0.00 3.36
213 214 3.374678 GTGTCACCGTAAGTTCCACAAAA 59.625 43.478 0.00 0.00 0.00 2.44
220 221 2.546789 CCCAAAGTGTCACCGTAAGTTC 59.453 50.000 0.00 0.00 0.00 3.01
225 226 0.034337 GAGCCCAAAGTGTCACCGTA 59.966 55.000 0.00 0.00 0.00 4.02
226 227 1.227853 GAGCCCAAAGTGTCACCGT 60.228 57.895 0.00 0.00 0.00 4.83
237 238 2.601367 GCTGCCCAAAGAGCCCAA 60.601 61.111 0.00 0.00 0.00 4.12
260 261 0.373716 CCCTTCGTGTATCGCTTTGC 59.626 55.000 0.00 0.00 39.67 3.68
282 283 0.817634 TGGTGTGCGGACTTTGGAAG 60.818 55.000 8.99 0.00 0.00 3.46
313 314 2.420022 GCTCGGCAATGTAACTGTTGAT 59.580 45.455 2.69 0.00 0.00 2.57
327 328 1.066422 GATGACATCGAGCTCGGCA 59.934 57.895 33.98 25.18 40.29 5.69
329 330 1.203928 GTTGATGACATCGAGCTCGG 58.796 55.000 33.98 21.94 40.29 4.63
332 333 2.749280 TGTGTTGATGACATCGAGCT 57.251 45.000 10.79 0.00 41.10 4.09
361 362 0.324738 CCTCCAGAGTGAGGCACCTA 60.325 60.000 0.00 0.00 45.13 3.08
371 372 2.327325 ATGTACCACACCTCCAGAGT 57.673 50.000 0.00 0.00 0.00 3.24
386 387 6.670464 TCTTGGTCTTCCAGTTGGTATATGTA 59.330 38.462 0.00 0.00 45.22 2.29
390 391 4.081087 GCTCTTGGTCTTCCAGTTGGTATA 60.081 45.833 0.00 0.00 45.22 1.47
402 403 0.178873 TAGGGGGTGCTCTTGGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
420 421 4.400884 ACATTGATTTTTGCATAGCCCGTA 59.599 37.500 0.00 0.00 0.00 4.02
428 429 4.097714 CGCGTCTACATTGATTTTTGCAT 58.902 39.130 0.00 0.00 0.00 3.96
452 453 1.893544 TCCTCTTTCACGTCTCGTCT 58.106 50.000 0.00 0.00 38.32 4.18
493 494 3.149196 CCAGGTAAGCTCATGTGTTGTT 58.851 45.455 0.00 0.00 0.00 2.83
502 503 1.920325 AGCTGCCCAGGTAAGCTCA 60.920 57.895 7.23 0.00 43.76 4.26
519 520 1.676014 CCTTCCACTACCAAAGCGGAG 60.676 57.143 0.00 0.00 37.72 4.63
520 521 0.323629 CCTTCCACTACCAAAGCGGA 59.676 55.000 0.00 0.00 34.49 5.54
521 522 1.305930 GCCTTCCACTACCAAAGCGG 61.306 60.000 0.00 0.00 42.50 5.52
522 523 0.321653 AGCCTTCCACTACCAAAGCG 60.322 55.000 0.00 0.00 0.00 4.68
523 524 1.168714 CAGCCTTCCACTACCAAAGC 58.831 55.000 0.00 0.00 0.00 3.51
524 525 1.351017 TCCAGCCTTCCACTACCAAAG 59.649 52.381 0.00 0.00 0.00 2.77
525 526 1.440618 TCCAGCCTTCCACTACCAAA 58.559 50.000 0.00 0.00 0.00 3.28
526 527 1.281867 CATCCAGCCTTCCACTACCAA 59.718 52.381 0.00 0.00 0.00 3.67
527 528 0.911769 CATCCAGCCTTCCACTACCA 59.088 55.000 0.00 0.00 0.00 3.25
528 529 1.204146 TCATCCAGCCTTCCACTACC 58.796 55.000 0.00 0.00 0.00 3.18
529 530 2.224402 GGATCATCCAGCCTTCCACTAC 60.224 54.545 0.00 0.00 36.28 2.73
530 531 2.050144 GGATCATCCAGCCTTCCACTA 58.950 52.381 0.00 0.00 36.28 2.74
531 532 0.842635 GGATCATCCAGCCTTCCACT 59.157 55.000 0.00 0.00 36.28 4.00
532 533 0.533755 CGGATCATCCAGCCTTCCAC 60.534 60.000 4.06 0.00 35.91 4.02
533 534 0.982852 ACGGATCATCCAGCCTTCCA 60.983 55.000 4.06 0.00 35.91 3.53
534 535 0.250081 GACGGATCATCCAGCCTTCC 60.250 60.000 4.06 0.00 35.91 3.46
535 536 0.465705 TGACGGATCATCCAGCCTTC 59.534 55.000 4.06 0.00 35.91 3.46
536 537 0.467384 CTGACGGATCATCCAGCCTT 59.533 55.000 4.06 0.00 35.91 4.35
537 538 2.037620 GCTGACGGATCATCCAGCCT 62.038 60.000 16.73 0.00 44.39 4.58
538 539 1.596477 GCTGACGGATCATCCAGCC 60.596 63.158 16.73 0.00 44.39 4.85
539 540 4.040068 GCTGACGGATCATCCAGC 57.960 61.111 4.06 13.93 44.00 4.85
540 541 1.070445 GGGCTGACGGATCATCCAG 59.930 63.158 4.06 0.00 42.10 3.86
541 542 0.982852 AAGGGCTGACGGATCATCCA 60.983 55.000 4.06 0.00 42.10 3.41
542 543 0.533755 CAAGGGCTGACGGATCATCC 60.534 60.000 0.00 0.00 39.96 3.51
543 544 0.465705 TCAAGGGCTGACGGATCATC 59.534 55.000 0.00 0.00 33.22 2.92
544 545 0.911769 TTCAAGGGCTGACGGATCAT 59.088 50.000 0.00 0.00 33.22 2.45
545 546 0.250234 CTTCAAGGGCTGACGGATCA 59.750 55.000 0.00 0.00 32.21 2.92
546 547 1.092345 GCTTCAAGGGCTGACGGATC 61.092 60.000 0.00 0.00 32.21 3.36
547 548 1.078143 GCTTCAAGGGCTGACGGAT 60.078 57.895 0.00 0.00 32.21 4.18
548 549 1.841302 ATGCTTCAAGGGCTGACGGA 61.841 55.000 0.00 0.00 32.21 4.69
549 550 0.107703 TATGCTTCAAGGGCTGACGG 60.108 55.000 0.00 0.00 32.21 4.79
550 551 1.293924 CTATGCTTCAAGGGCTGACG 58.706 55.000 0.00 0.00 32.21 4.35
551 552 1.020437 GCTATGCTTCAAGGGCTGAC 58.980 55.000 0.00 0.00 32.21 3.51
552 553 0.620030 TGCTATGCTTCAAGGGCTGA 59.380 50.000 0.00 0.00 0.00 4.26
553 554 1.337071 CATGCTATGCTTCAAGGGCTG 59.663 52.381 0.00 0.00 0.00 4.85
554 555 1.064166 ACATGCTATGCTTCAAGGGCT 60.064 47.619 0.00 0.00 0.00 5.19
555 556 1.336125 GACATGCTATGCTTCAAGGGC 59.664 52.381 0.00 0.00 0.00 5.19
556 557 1.600957 CGACATGCTATGCTTCAAGGG 59.399 52.381 0.00 0.00 0.00 3.95
557 558 2.031314 CACGACATGCTATGCTTCAAGG 59.969 50.000 0.00 0.00 0.00 3.61
558 559 2.931969 TCACGACATGCTATGCTTCAAG 59.068 45.455 0.00 0.00 0.00 3.02
559 560 2.971307 TCACGACATGCTATGCTTCAA 58.029 42.857 0.00 0.00 0.00 2.69
560 561 2.671130 TCACGACATGCTATGCTTCA 57.329 45.000 0.00 0.00 0.00 3.02
561 562 2.286294 CCTTCACGACATGCTATGCTTC 59.714 50.000 0.00 0.00 0.00 3.86
562 563 2.093500 TCCTTCACGACATGCTATGCTT 60.093 45.455 0.00 0.00 0.00 3.91
563 564 1.482182 TCCTTCACGACATGCTATGCT 59.518 47.619 0.00 0.00 0.00 3.79
564 565 1.939974 TCCTTCACGACATGCTATGC 58.060 50.000 0.00 0.00 0.00 3.14
565 566 3.249320 CCAATCCTTCACGACATGCTATG 59.751 47.826 0.00 0.00 0.00 2.23
566 567 3.470709 CCAATCCTTCACGACATGCTAT 58.529 45.455 0.00 0.00 0.00 2.97
567 568 2.905075 CCAATCCTTCACGACATGCTA 58.095 47.619 0.00 0.00 0.00 3.49
568 569 1.742761 CCAATCCTTCACGACATGCT 58.257 50.000 0.00 0.00 0.00 3.79
569 570 0.099436 GCCAATCCTTCACGACATGC 59.901 55.000 0.00 0.00 0.00 4.06
570 571 0.374758 CGCCAATCCTTCACGACATG 59.625 55.000 0.00 0.00 0.00 3.21
571 572 1.369091 GCGCCAATCCTTCACGACAT 61.369 55.000 0.00 0.00 0.00 3.06
572 573 2.032634 GCGCCAATCCTTCACGACA 61.033 57.895 0.00 0.00 0.00 4.35
573 574 0.459585 TAGCGCCAATCCTTCACGAC 60.460 55.000 2.29 0.00 0.00 4.34
574 575 0.179111 CTAGCGCCAATCCTTCACGA 60.179 55.000 2.29 0.00 0.00 4.35
575 576 1.766143 GCTAGCGCCAATCCTTCACG 61.766 60.000 2.29 0.00 0.00 4.35
576 577 0.744414 TGCTAGCGCCAATCCTTCAC 60.744 55.000 10.77 0.00 34.43 3.18
577 578 0.462581 CTGCTAGCGCCAATCCTTCA 60.463 55.000 10.77 0.00 34.43 3.02
578 579 1.780025 GCTGCTAGCGCCAATCCTTC 61.780 60.000 17.24 0.00 34.43 3.46
579 580 1.821332 GCTGCTAGCGCCAATCCTT 60.821 57.895 17.24 0.00 34.43 3.36
580 581 2.203126 GCTGCTAGCGCCAATCCT 60.203 61.111 17.24 0.00 34.43 3.24
589 590 0.034616 AATGGAGATCCGCTGCTAGC 59.965 55.000 8.10 8.10 39.43 3.42
590 591 2.540265 AAATGGAGATCCGCTGCTAG 57.460 50.000 0.00 0.00 39.43 3.42
591 592 4.127171 GTTTAAATGGAGATCCGCTGCTA 58.873 43.478 0.00 0.00 39.43 3.49
592 593 2.945668 GTTTAAATGGAGATCCGCTGCT 59.054 45.455 0.00 0.00 39.43 4.24
593 594 2.033424 GGTTTAAATGGAGATCCGCTGC 59.967 50.000 0.00 0.00 39.43 5.25
594 595 3.278574 TGGTTTAAATGGAGATCCGCTG 58.721 45.455 0.00 0.00 39.43 5.18
595 596 3.054361 ACTGGTTTAAATGGAGATCCGCT 60.054 43.478 0.00 0.00 39.43 5.52
596 597 3.279434 ACTGGTTTAAATGGAGATCCGC 58.721 45.455 0.00 0.00 39.43 5.54
597 598 5.183140 ACAAACTGGTTTAAATGGAGATCCG 59.817 40.000 0.00 0.00 39.43 4.18
598 599 6.208599 TGACAAACTGGTTTAAATGGAGATCC 59.791 38.462 0.00 0.00 0.00 3.36
599 600 7.214467 TGACAAACTGGTTTAAATGGAGATC 57.786 36.000 0.00 0.00 0.00 2.75
600 601 7.451255 TGATGACAAACTGGTTTAAATGGAGAT 59.549 33.333 0.00 0.00 0.00 2.75
601 602 6.775142 TGATGACAAACTGGTTTAAATGGAGA 59.225 34.615 0.00 0.00 0.00 3.71
602 603 6.863126 GTGATGACAAACTGGTTTAAATGGAG 59.137 38.462 0.00 0.00 0.00 3.86
603 604 6.549364 AGTGATGACAAACTGGTTTAAATGGA 59.451 34.615 0.00 0.00 0.00 3.41
604 605 6.748132 AGTGATGACAAACTGGTTTAAATGG 58.252 36.000 0.00 0.00 0.00 3.16
605 606 7.113404 CGAAGTGATGACAAACTGGTTTAAATG 59.887 37.037 0.00 0.00 0.00 2.32
606 607 7.138736 CGAAGTGATGACAAACTGGTTTAAAT 58.861 34.615 0.00 0.00 0.00 1.40
607 608 6.459024 CCGAAGTGATGACAAACTGGTTTAAA 60.459 38.462 0.00 0.00 0.00 1.52
608 609 5.008217 CCGAAGTGATGACAAACTGGTTTAA 59.992 40.000 0.00 0.00 0.00 1.52
609 610 4.513692 CCGAAGTGATGACAAACTGGTTTA 59.486 41.667 0.00 0.00 0.00 2.01
610 611 3.315191 CCGAAGTGATGACAAACTGGTTT 59.685 43.478 0.00 0.00 0.00 3.27
611 612 2.878406 CCGAAGTGATGACAAACTGGTT 59.122 45.455 0.00 0.00 0.00 3.67
612 613 2.104111 TCCGAAGTGATGACAAACTGGT 59.896 45.455 0.00 0.00 0.00 4.00
613 614 2.480419 GTCCGAAGTGATGACAAACTGG 59.520 50.000 0.00 0.00 0.00 4.00
614 615 2.155732 CGTCCGAAGTGATGACAAACTG 59.844 50.000 0.00 0.00 0.00 3.16
615 616 2.404215 CGTCCGAAGTGATGACAAACT 58.596 47.619 0.00 0.00 0.00 2.66
616 617 1.136336 GCGTCCGAAGTGATGACAAAC 60.136 52.381 0.00 0.00 0.00 2.93
617 618 1.144969 GCGTCCGAAGTGATGACAAA 58.855 50.000 0.00 0.00 0.00 2.83
618 619 0.032815 TGCGTCCGAAGTGATGACAA 59.967 50.000 0.00 0.00 0.00 3.18
619 620 0.666274 GTGCGTCCGAAGTGATGACA 60.666 55.000 0.00 0.00 0.00 3.58
620 621 0.666274 TGTGCGTCCGAAGTGATGAC 60.666 55.000 0.00 0.00 0.00 3.06
621 622 0.388520 CTGTGCGTCCGAAGTGATGA 60.389 55.000 0.00 0.00 0.00 2.92
622 623 0.388520 TCTGTGCGTCCGAAGTGATG 60.389 55.000 0.00 0.00 0.00 3.07
623 624 0.388649 GTCTGTGCGTCCGAAGTGAT 60.389 55.000 0.00 0.00 0.00 3.06
624 625 1.007734 GTCTGTGCGTCCGAAGTGA 60.008 57.895 0.00 0.00 0.00 3.41
625 626 2.365068 CGTCTGTGCGTCCGAAGTG 61.365 63.158 0.00 0.00 0.00 3.16
626 627 2.050351 CGTCTGTGCGTCCGAAGT 60.050 61.111 0.00 0.00 0.00 3.01
627 628 2.805353 CCGTCTGTGCGTCCGAAG 60.805 66.667 0.00 0.00 0.00 3.79
628 629 3.598715 ACCGTCTGTGCGTCCGAA 61.599 61.111 0.00 0.00 0.00 4.30
629 630 4.337060 CACCGTCTGTGCGTCCGA 62.337 66.667 0.00 0.00 38.34 4.55
631 632 4.295119 ACCACCGTCTGTGCGTCC 62.295 66.667 0.00 0.00 44.01 4.79
632 633 3.036084 CACCACCGTCTGTGCGTC 61.036 66.667 0.00 0.00 44.01 5.19
633 634 3.499929 CTCACCACCGTCTGTGCGT 62.500 63.158 0.00 0.00 44.01 5.24
634 635 2.734723 CTCACCACCGTCTGTGCG 60.735 66.667 0.00 0.00 44.01 5.34
635 636 1.956170 CACTCACCACCGTCTGTGC 60.956 63.158 0.00 0.00 44.01 4.57
636 637 1.956170 GCACTCACCACCGTCTGTG 60.956 63.158 0.00 0.00 45.01 3.66
637 638 1.966901 TTGCACTCACCACCGTCTGT 61.967 55.000 0.00 0.00 0.00 3.41
638 639 0.603707 ATTGCACTCACCACCGTCTG 60.604 55.000 0.00 0.00 0.00 3.51
639 640 0.320771 GATTGCACTCACCACCGTCT 60.321 55.000 0.00 0.00 0.00 4.18
640 641 0.602638 TGATTGCACTCACCACCGTC 60.603 55.000 2.07 0.00 0.00 4.79
641 642 0.179032 TTGATTGCACTCACCACCGT 60.179 50.000 6.20 0.00 0.00 4.83
642 643 0.238289 GTTGATTGCACTCACCACCG 59.762 55.000 6.20 0.00 0.00 4.94
643 644 1.317613 TGTTGATTGCACTCACCACC 58.682 50.000 6.20 0.00 0.00 4.61
644 645 2.287788 CCTTGTTGATTGCACTCACCAC 60.288 50.000 6.20 4.21 0.00 4.16
645 646 1.955778 CCTTGTTGATTGCACTCACCA 59.044 47.619 6.20 2.94 0.00 4.17
646 647 1.270550 CCCTTGTTGATTGCACTCACC 59.729 52.381 6.20 0.00 0.00 4.02
647 648 1.336240 GCCCTTGTTGATTGCACTCAC 60.336 52.381 6.20 3.36 0.00 3.51
648 649 0.961019 GCCCTTGTTGATTGCACTCA 59.039 50.000 2.07 2.07 0.00 3.41
649 650 0.961019 TGCCCTTGTTGATTGCACTC 59.039 50.000 0.00 0.00 0.00 3.51
650 651 0.963962 CTGCCCTTGTTGATTGCACT 59.036 50.000 0.00 0.00 0.00 4.40
651 652 0.668401 GCTGCCCTTGTTGATTGCAC 60.668 55.000 0.00 0.00 0.00 4.57
652 653 0.828762 AGCTGCCCTTGTTGATTGCA 60.829 50.000 0.00 0.00 0.00 4.08
653 654 0.319405 AAGCTGCCCTTGTTGATTGC 59.681 50.000 0.00 0.00 30.99 3.56
654 655 2.165030 CCTAAGCTGCCCTTGTTGATTG 59.835 50.000 0.00 0.00 34.95 2.67
655 656 2.450476 CCTAAGCTGCCCTTGTTGATT 58.550 47.619 0.00 0.00 34.95 2.57
656 657 1.957113 GCCTAAGCTGCCCTTGTTGAT 60.957 52.381 0.00 0.00 34.95 2.57
657 658 0.609131 GCCTAAGCTGCCCTTGTTGA 60.609 55.000 0.00 0.00 34.95 3.18
658 659 0.895100 TGCCTAAGCTGCCCTTGTTG 60.895 55.000 0.00 0.00 40.80 3.33
659 660 0.895559 GTGCCTAAGCTGCCCTTGTT 60.896 55.000 0.00 0.00 40.80 2.83
660 661 1.303643 GTGCCTAAGCTGCCCTTGT 60.304 57.895 0.00 0.00 40.80 3.16
661 662 0.682209 ATGTGCCTAAGCTGCCCTTG 60.682 55.000 0.00 0.00 40.80 3.61
662 663 0.040204 AATGTGCCTAAGCTGCCCTT 59.960 50.000 0.00 0.00 40.80 3.95
663 664 0.040204 AAATGTGCCTAAGCTGCCCT 59.960 50.000 0.00 0.00 40.80 5.19
664 665 0.174162 CAAATGTGCCTAAGCTGCCC 59.826 55.000 0.00 0.00 40.80 5.36
665 666 0.174162 CCAAATGTGCCTAAGCTGCC 59.826 55.000 0.00 0.00 40.80 4.85
666 667 0.890683 ACCAAATGTGCCTAAGCTGC 59.109 50.000 0.00 0.00 40.80 5.25
667 668 2.642139 CACCAAATGTGCCTAAGCTG 57.358 50.000 0.00 0.00 38.34 4.24
677 678 8.795842 ATTTCATTGATAATTGCACCAAATGT 57.204 26.923 0.00 0.00 0.00 2.71
682 683 9.941325 AGTTTTATTTCATTGATAATTGCACCA 57.059 25.926 0.00 0.00 0.00 4.17
703 704 9.472361 CATTGAAATGACTCTGATTGAAGTTTT 57.528 29.630 0.00 0.00 38.70 2.43
704 705 8.636213 ACATTGAAATGACTCTGATTGAAGTTT 58.364 29.630 9.94 0.00 39.67 2.66
705 706 8.174733 ACATTGAAATGACTCTGATTGAAGTT 57.825 30.769 9.94 0.00 39.67 2.66
706 707 7.756395 ACATTGAAATGACTCTGATTGAAGT 57.244 32.000 9.94 0.00 39.67 3.01
713 714 9.897744 GACAAAATTACATTGAAATGACTCTGA 57.102 29.630 9.94 0.00 39.67 3.27
714 715 9.903682 AGACAAAATTACATTGAAATGACTCTG 57.096 29.630 9.94 2.71 39.67 3.35
722 723 9.883142 ACCTTCAAAGACAAAATTACATTGAAA 57.117 25.926 0.00 0.00 35.59 2.69
723 724 9.528018 GACCTTCAAAGACAAAATTACATTGAA 57.472 29.630 0.00 0.00 34.99 2.69
724 725 7.860373 CGACCTTCAAAGACAAAATTACATTGA 59.140 33.333 0.00 0.00 0.00 2.57
725 726 7.647715 ACGACCTTCAAAGACAAAATTACATTG 59.352 33.333 0.00 0.00 0.00 2.82
726 727 7.647715 CACGACCTTCAAAGACAAAATTACATT 59.352 33.333 0.00 0.00 0.00 2.71
727 728 7.138736 CACGACCTTCAAAGACAAAATTACAT 58.861 34.615 0.00 0.00 0.00 2.29
728 729 6.491394 CACGACCTTCAAAGACAAAATTACA 58.509 36.000 0.00 0.00 0.00 2.41
729 730 5.398416 GCACGACCTTCAAAGACAAAATTAC 59.602 40.000 0.00 0.00 0.00 1.89
730 731 5.506649 GGCACGACCTTCAAAGACAAAATTA 60.507 40.000 0.00 0.00 34.51 1.40
731 732 4.359706 GCACGACCTTCAAAGACAAAATT 58.640 39.130 0.00 0.00 0.00 1.82
732 733 3.243401 GGCACGACCTTCAAAGACAAAAT 60.243 43.478 0.00 0.00 34.51 1.82
733 734 2.098443 GGCACGACCTTCAAAGACAAAA 59.902 45.455 0.00 0.00 34.51 2.44
734 735 1.673920 GGCACGACCTTCAAAGACAAA 59.326 47.619 0.00 0.00 34.51 2.83
735 736 1.305201 GGCACGACCTTCAAAGACAA 58.695 50.000 0.00 0.00 34.51 3.18
736 737 3.000815 GGCACGACCTTCAAAGACA 57.999 52.632 0.00 0.00 34.51 3.41
746 747 0.539986 TCCTTATTGGAGGCACGACC 59.460 55.000 0.00 0.00 40.56 4.79
755 756 5.957771 AGACTATGTGCTTCCTTATTGGA 57.042 39.130 0.00 0.00 44.51 3.53
756 757 5.698545 GCTAGACTATGTGCTTCCTTATTGG 59.301 44.000 0.00 0.00 37.10 3.16
757 758 5.698545 GGCTAGACTATGTGCTTCCTTATTG 59.301 44.000 0.00 0.00 0.00 1.90
758 759 5.366768 TGGCTAGACTATGTGCTTCCTTATT 59.633 40.000 0.00 0.00 0.00 1.40
759 760 4.901849 TGGCTAGACTATGTGCTTCCTTAT 59.098 41.667 0.00 0.00 0.00 1.73
760 761 4.286707 TGGCTAGACTATGTGCTTCCTTA 58.713 43.478 0.00 0.00 0.00 2.69
761 762 3.107601 TGGCTAGACTATGTGCTTCCTT 58.892 45.455 0.00 0.00 0.00 3.36
762 763 2.752030 TGGCTAGACTATGTGCTTCCT 58.248 47.619 0.00 0.00 0.00 3.36
763 764 3.543680 TTGGCTAGACTATGTGCTTCC 57.456 47.619 0.00 0.00 0.00 3.46
764 765 4.253685 TGTTTGGCTAGACTATGTGCTTC 58.746 43.478 0.00 0.00 0.00 3.86
765 766 4.286297 TGTTTGGCTAGACTATGTGCTT 57.714 40.909 0.00 0.00 0.00 3.91
766 767 3.981071 TGTTTGGCTAGACTATGTGCT 57.019 42.857 0.00 0.00 0.00 4.40
767 768 4.878397 AGATTGTTTGGCTAGACTATGTGC 59.122 41.667 0.00 0.00 0.00 4.57
768 769 6.344500 AGAGATTGTTTGGCTAGACTATGTG 58.656 40.000 0.00 0.00 0.00 3.21
769 770 6.407525 GGAGAGATTGTTTGGCTAGACTATGT 60.408 42.308 0.00 0.00 0.00 2.29
770 771 5.988561 GGAGAGATTGTTTGGCTAGACTATG 59.011 44.000 0.00 0.00 0.00 2.23
771 772 5.902431 AGGAGAGATTGTTTGGCTAGACTAT 59.098 40.000 0.00 0.00 0.00 2.12
772 773 5.273208 AGGAGAGATTGTTTGGCTAGACTA 58.727 41.667 0.00 0.00 0.00 2.59
773 774 4.100373 AGGAGAGATTGTTTGGCTAGACT 58.900 43.478 0.00 0.00 0.00 3.24
774 775 4.479786 AGGAGAGATTGTTTGGCTAGAC 57.520 45.455 0.00 0.00 0.00 2.59
775 776 4.780021 AGAAGGAGAGATTGTTTGGCTAGA 59.220 41.667 0.00 0.00 0.00 2.43
776 777 5.096443 AGAAGGAGAGATTGTTTGGCTAG 57.904 43.478 0.00 0.00 0.00 3.42
777 778 5.958380 TCTAGAAGGAGAGATTGTTTGGCTA 59.042 40.000 0.00 0.00 0.00 3.93
778 779 4.780021 TCTAGAAGGAGAGATTGTTTGGCT 59.220 41.667 0.00 0.00 0.00 4.75
779 780 5.091261 TCTAGAAGGAGAGATTGTTTGGC 57.909 43.478 0.00 0.00 0.00 4.52
780 781 6.126940 TGGATCTAGAAGGAGAGATTGTTTGG 60.127 42.308 0.00 0.00 32.47 3.28
781 782 6.882656 TGGATCTAGAAGGAGAGATTGTTTG 58.117 40.000 0.00 0.00 32.47 2.93
782 783 6.099557 CCTGGATCTAGAAGGAGAGATTGTTT 59.900 42.308 7.81 0.00 32.47 2.83
783 784 5.602145 CCTGGATCTAGAAGGAGAGATTGTT 59.398 44.000 7.81 0.00 32.47 2.83
784 785 5.103301 TCCTGGATCTAGAAGGAGAGATTGT 60.103 44.000 7.81 0.00 35.14 2.71
785 786 5.243730 GTCCTGGATCTAGAAGGAGAGATTG 59.756 48.000 11.29 0.00 40.76 2.67
786 787 5.136048 AGTCCTGGATCTAGAAGGAGAGATT 59.864 44.000 11.29 0.00 40.76 2.40
787 788 4.669768 AGTCCTGGATCTAGAAGGAGAGAT 59.330 45.833 11.29 0.00 40.76 2.75
788 789 4.051478 AGTCCTGGATCTAGAAGGAGAGA 58.949 47.826 11.29 0.00 40.76 3.10
789 790 4.398319 GAGTCCTGGATCTAGAAGGAGAG 58.602 52.174 11.29 0.00 40.76 3.20
790 791 3.139397 GGAGTCCTGGATCTAGAAGGAGA 59.861 52.174 11.29 0.00 40.76 3.71
791 792 3.117322 TGGAGTCCTGGATCTAGAAGGAG 60.117 52.174 11.29 0.90 40.76 3.69
792 793 2.859404 TGGAGTCCTGGATCTAGAAGGA 59.141 50.000 11.33 7.46 37.78 3.36
793 794 3.230134 CTGGAGTCCTGGATCTAGAAGG 58.770 54.545 11.33 0.00 0.00 3.46
794 795 3.230134 CCTGGAGTCCTGGATCTAGAAG 58.770 54.545 27.02 4.16 44.09 2.85
795 796 2.091055 CCCTGGAGTCCTGGATCTAGAA 60.091 54.545 31.32 0.00 44.09 2.10
796 797 1.501170 CCCTGGAGTCCTGGATCTAGA 59.499 57.143 31.32 0.00 44.09 2.43
797 798 2.008242 CCCTGGAGTCCTGGATCTAG 57.992 60.000 31.32 13.87 44.09 2.43
798 799 0.105453 GCCCTGGAGTCCTGGATCTA 60.105 60.000 31.32 0.00 44.09 1.98
799 800 1.383803 GCCCTGGAGTCCTGGATCT 60.384 63.158 31.32 0.00 44.09 2.75
800 801 2.801631 CGCCCTGGAGTCCTGGATC 61.802 68.421 31.32 21.54 44.09 3.36
801 802 2.765807 CGCCCTGGAGTCCTGGAT 60.766 66.667 31.32 0.00 44.09 3.41
819 820 1.674817 GGTTGACCATACCAGACGTGG 60.675 57.143 0.00 0.00 42.28 4.94
820 821 1.674817 GGGTTGACCATACCAGACGTG 60.675 57.143 0.00 0.00 39.85 4.49
821 822 0.611714 GGGTTGACCATACCAGACGT 59.388 55.000 2.12 0.00 39.85 4.34
822 823 0.107848 GGGGTTGACCATACCAGACG 60.108 60.000 2.12 0.00 42.91 4.18
823 824 0.107848 CGGGGTTGACCATACCAGAC 60.108 60.000 2.12 0.00 42.91 3.51
824 825 0.545787 ACGGGGTTGACCATACCAGA 60.546 55.000 2.12 0.00 42.91 3.86
825 826 0.392461 CACGGGGTTGACCATACCAG 60.392 60.000 2.12 0.00 42.91 4.00
826 827 0.836830 TCACGGGGTTGACCATACCA 60.837 55.000 2.12 0.00 42.91 3.25
827 828 0.392060 GTCACGGGGTTGACCATACC 60.392 60.000 2.12 0.00 40.15 2.73
828 829 0.738412 CGTCACGGGGTTGACCATAC 60.738 60.000 2.12 0.00 42.63 2.39
829 830 1.186917 ACGTCACGGGGTTGACCATA 61.187 55.000 0.35 0.00 42.63 2.74
830 831 2.345991 CGTCACGGGGTTGACCAT 59.654 61.111 2.12 0.00 42.63 3.55
831 832 3.155861 ACGTCACGGGGTTGACCA 61.156 61.111 0.35 0.00 42.63 4.02
832 833 2.647680 TTCACGTCACGGGGTTGACC 62.648 60.000 0.00 0.00 42.63 4.02
833 834 1.227321 TTCACGTCACGGGGTTGAC 60.227 57.895 0.00 0.00 42.24 3.18
834 835 1.227321 GTTCACGTCACGGGGTTGA 60.227 57.895 0.00 0.00 0.00 3.18
835 836 1.227438 AGTTCACGTCACGGGGTTG 60.227 57.895 0.00 0.00 0.00 3.77
836 837 1.227438 CAGTTCACGTCACGGGGTT 60.227 57.895 0.00 0.00 0.00 4.11
837 838 1.108727 TACAGTTCACGTCACGGGGT 61.109 55.000 0.00 0.00 0.00 4.95
838 839 0.245539 ATACAGTTCACGTCACGGGG 59.754 55.000 0.00 0.00 0.00 5.73
839 840 1.625616 GATACAGTTCACGTCACGGG 58.374 55.000 0.35 0.00 0.00 5.28
840 841 1.068125 TGGATACAGTTCACGTCACGG 60.068 52.381 0.35 0.00 46.17 4.94
841 842 2.341318 TGGATACAGTTCACGTCACG 57.659 50.000 0.00 0.00 46.17 4.35
862 863 7.652909 ACTTTATTCATCAAACACCACATTGTG 59.347 33.333 9.92 9.92 42.05 3.33
863 864 7.725251 ACTTTATTCATCAAACACCACATTGT 58.275 30.769 0.00 0.00 0.00 2.71
864 865 8.592105 AACTTTATTCATCAAACACCACATTG 57.408 30.769 0.00 0.00 0.00 2.82
865 866 9.044150 CAAACTTTATTCATCAAACACCACATT 57.956 29.630 0.00 0.00 0.00 2.71
866 867 7.656948 CCAAACTTTATTCATCAAACACCACAT 59.343 33.333 0.00 0.00 0.00 3.21
867 868 6.983307 CCAAACTTTATTCATCAAACACCACA 59.017 34.615 0.00 0.00 0.00 4.17
868 869 6.073819 GCCAAACTTTATTCATCAAACACCAC 60.074 38.462 0.00 0.00 0.00 4.16
869 870 5.988561 GCCAAACTTTATTCATCAAACACCA 59.011 36.000 0.00 0.00 0.00 4.17
870 871 6.223120 AGCCAAACTTTATTCATCAAACACC 58.777 36.000 0.00 0.00 0.00 4.16
871 872 7.713764 AAGCCAAACTTTATTCATCAAACAC 57.286 32.000 0.00 0.00 33.71 3.32
872 873 7.870445 GGTAAGCCAAACTTTATTCATCAAACA 59.130 33.333 0.00 0.00 39.97 2.83
873 874 7.330946 GGGTAAGCCAAACTTTATTCATCAAAC 59.669 37.037 0.00 0.00 39.97 2.93
874 875 7.234577 AGGGTAAGCCAAACTTTATTCATCAAA 59.765 33.333 0.00 0.00 39.97 2.69
875 876 6.723977 AGGGTAAGCCAAACTTTATTCATCAA 59.276 34.615 0.00 0.00 39.97 2.57
876 877 6.252995 AGGGTAAGCCAAACTTTATTCATCA 58.747 36.000 0.00 0.00 39.97 3.07
877 878 6.775594 AGGGTAAGCCAAACTTTATTCATC 57.224 37.500 0.00 0.00 39.97 2.92
878 879 8.658840 TTTAGGGTAAGCCAAACTTTATTCAT 57.341 30.769 0.00 0.00 39.97 2.57
879 880 8.480133 TTTTAGGGTAAGCCAAACTTTATTCA 57.520 30.769 0.00 0.00 39.97 2.57
903 904 1.228862 AGCGGGGACAGGCATTTTT 60.229 52.632 0.00 0.00 0.00 1.94
904 905 1.678970 GAGCGGGGACAGGCATTTT 60.679 57.895 0.00 0.00 0.00 1.82
905 906 2.044946 GAGCGGGGACAGGCATTT 60.045 61.111 0.00 0.00 0.00 2.32
906 907 2.424842 TTTGAGCGGGGACAGGCATT 62.425 55.000 0.00 0.00 0.00 3.56
907 908 2.424842 TTTTGAGCGGGGACAGGCAT 62.425 55.000 0.00 0.00 0.00 4.40
1134 1150 2.748647 TCGGTGATGAGACGGCGA 60.749 61.111 16.62 0.00 0.00 5.54
1411 4266 3.994931 AAAATAGCGGTACTGGAGGTT 57.005 42.857 3.34 0.00 0.00 3.50
1578 4450 3.199946 ACATGACCCTGAATGATAACGGT 59.800 43.478 0.00 0.00 0.00 4.83
1621 4495 4.295051 GAGAAGACGAGAAGCACCATATC 58.705 47.826 0.00 0.00 0.00 1.63
1696 4579 2.983192 TGGGGTGTTTAAGTGGATCAGA 59.017 45.455 0.00 0.00 0.00 3.27
1698 4581 3.499563 CCTTGGGGTGTTTAAGTGGATCA 60.500 47.826 0.00 0.00 0.00 2.92
1726 4630 2.675844 ACGAACTGACGATCTGAGAGAG 59.324 50.000 0.00 0.00 37.03 3.20
1727 4631 2.673862 GACGAACTGACGATCTGAGAGA 59.326 50.000 0.00 0.00 37.03 3.10
1772 4682 0.251341 CCAACTTGTTCAGGAGGGGG 60.251 60.000 0.00 0.00 0.00 5.40
1846 4756 1.093159 GCTGCTCCATCCTTGTTCAG 58.907 55.000 0.00 0.00 0.00 3.02
1847 4757 0.401356 TGCTGCTCCATCCTTGTTCA 59.599 50.000 0.00 0.00 0.00 3.18
1848 4758 1.538047 TTGCTGCTCCATCCTTGTTC 58.462 50.000 0.00 0.00 0.00 3.18
1849 4759 2.226962 ATTGCTGCTCCATCCTTGTT 57.773 45.000 0.00 0.00 0.00 2.83
1850 4760 2.226962 AATTGCTGCTCCATCCTTGT 57.773 45.000 0.00 0.00 0.00 3.16
1851 4761 3.259064 CAAAATTGCTGCTCCATCCTTG 58.741 45.455 0.00 0.00 0.00 3.61
1916 4832 9.768215 TCATATATGTTATCCCTGTCATAGACA 57.232 33.333 12.42 0.00 40.50 3.41
2092 5017 2.963599 TAACCCAAACTTCACCTCCC 57.036 50.000 0.00 0.00 0.00 4.30
2135 5060 2.795175 GAGTGAACAACTCGACCTGA 57.205 50.000 0.00 0.00 45.76 3.86
2151 5076 2.232452 AGATGACTTTGCTACGCTGAGT 59.768 45.455 0.00 0.00 0.00 3.41
2443 5503 9.353999 GTAACCTCAAAATGGTGATAACAAATC 57.646 33.333 0.00 0.00 37.93 2.17
2469 5529 6.750148 AGAGGCTTCTGATTTATTAGTACGG 58.250 40.000 0.00 0.00 30.72 4.02
2475 5535 7.394359 AGCAACAAAGAGGCTTCTGATTTATTA 59.606 33.333 0.00 0.00 33.21 0.98
2624 5719 2.157738 AGCAGAAACATGGAGCTGTTC 58.842 47.619 0.00 0.00 38.38 3.18
2631 5726 3.405831 CTGTTCAGAGCAGAAACATGGA 58.594 45.455 8.57 0.00 36.12 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.