Multiple sequence alignment - TraesCS3A01G511800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G511800 chr3A 100.000 3934 0 0 1 3934 731228449 731224516 0.000000e+00 7265.0
1 TraesCS3A01G511800 chr3A 93.803 3050 112 27 1 3000 32254314 32251292 0.000000e+00 4514.0
2 TraesCS3A01G511800 chr3A 88.177 406 25 16 2596 2996 32385069 32384682 2.770000e-126 462.0
3 TraesCS3A01G511800 chr3A 80.775 645 56 28 2004 2610 32385728 32385114 3.610000e-120 442.0
4 TraesCS3A01G511800 chr3A 84.762 420 26 14 3005 3400 32384637 32384232 1.710000e-103 387.0
5 TraesCS3A01G511800 chr3A 83.333 450 40 13 1283 1705 32152996 32152555 2.220000e-102 383.0
6 TraesCS3A01G511800 chr3A 81.690 426 37 26 2499 2891 610783694 610783277 2.280000e-82 316.0
7 TraesCS3A01G511800 chr3A 79.756 410 36 19 3005 3398 32251251 32250873 1.810000e-63 254.0
8 TraesCS3A01G511800 chr3A 80.385 260 19 12 1040 1274 32286259 32286007 6.760000e-38 169.0
9 TraesCS3A01G511800 chr3A 91.525 59 3 2 779 837 57205767 57205711 3.260000e-11 80.5
10 TraesCS3A01G511800 chr3A 85.135 74 5 1 1917 1984 32385899 32385826 1.960000e-08 71.3
11 TraesCS3A01G511800 chr3B 90.096 1040 63 14 1983 3000 40866059 40865038 0.000000e+00 1314.0
12 TraesCS3A01G511800 chr3B 91.299 770 31 12 1179 1919 40866951 40866189 0.000000e+00 1018.0
13 TraesCS3A01G511800 chr3B 87.421 787 94 3 1 787 616305729 616304948 0.000000e+00 900.0
14 TraesCS3A01G511800 chr3B 83.059 1033 89 44 2013 3000 40908938 40907947 0.000000e+00 859.0
15 TraesCS3A01G511800 chr3B 87.589 419 25 11 3005 3400 40907906 40907492 9.960000e-126 460.0
16 TraesCS3A01G511800 chr3B 81.585 467 42 19 1275 1705 40246823 40246365 2.910000e-91 346.0
17 TraesCS3A01G511800 chr3B 81.164 292 28 14 3124 3400 40864730 40864451 3.980000e-50 209.0
18 TraesCS3A01G511800 chr3B 97.959 49 1 0 1917 1965 40866154 40866106 7.000000e-13 86.1
19 TraesCS3A01G511800 chr3B 94.545 55 2 1 783 837 765028567 765028620 2.520000e-12 84.2
20 TraesCS3A01G511800 chr3D 86.861 1096 58 19 891 1919 23175008 23173932 0.000000e+00 1147.0
21 TraesCS3A01G511800 chr3D 84.767 814 63 32 2627 3400 23195197 23194405 0.000000e+00 760.0
22 TraesCS3A01G511800 chr3D 86.926 719 35 15 1983 2692 23173801 23173133 0.000000e+00 752.0
23 TraesCS3A01G511800 chr3D 80.861 627 57 26 2018 2610 23195840 23195243 6.040000e-118 435.0
24 TraesCS3A01G511800 chr3D 81.128 461 49 15 1275 1705 23064745 23064293 6.300000e-88 335.0
25 TraesCS3A01G511800 chr3D 82.528 269 8 11 2750 3000 23173125 23172878 2.400000e-47 200.0
26 TraesCS3A01G511800 chr3D 91.781 73 6 0 3111 3183 23172630 23172558 6.950000e-18 102.0
27 TraesCS3A01G511800 chr3D 100.000 49 0 0 1917 1965 23173896 23173848 1.510000e-14 91.6
28 TraesCS3A01G511800 chr3D 92.727 55 3 1 783 837 615347034 615346981 1.170000e-10 78.7
29 TraesCS3A01G511800 chr3D 86.486 74 4 1 1917 1984 23196031 23195958 4.220000e-10 76.8
30 TraesCS3A01G511800 chr4D 89.381 791 76 5 1 789 57683993 57684777 0.000000e+00 989.0
31 TraesCS3A01G511800 chr4D 87.452 789 89 6 1 787 196237811 196237031 0.000000e+00 900.0
32 TraesCS3A01G511800 chr4D 90.909 55 3 1 3584 3638 400234722 400234774 5.450000e-09 73.1
33 TraesCS3A01G511800 chr5B 89.213 788 79 3 1 787 690990646 690989864 0.000000e+00 979.0
34 TraesCS3A01G511800 chr7D 87.768 793 89 5 1 792 159650102 159649317 0.000000e+00 920.0
35 TraesCS3A01G511800 chr7D 88.889 432 41 2 1254 1685 157758712 157758288 3.480000e-145 525.0
36 TraesCS3A01G511800 chr1D 87.833 789 89 4 1 787 248252868 248253651 0.000000e+00 918.0
37 TraesCS3A01G511800 chr1D 80.694 461 51 15 1275 1705 225396656 225397108 1.360000e-84 324.0
38 TraesCS3A01G511800 chr1D 79.878 164 27 5 2067 2224 375646682 375646519 8.930000e-22 115.0
39 TraesCS3A01G511800 chr7B 87.548 787 92 3 1 787 553216726 553217506 0.000000e+00 905.0
40 TraesCS3A01G511800 chr7A 87.247 792 95 3 1 792 229837855 229838640 0.000000e+00 898.0
41 TraesCS3A01G511800 chr2D 90.604 447 12 4 3510 3934 45882546 45882984 2.050000e-157 566.0
42 TraesCS3A01G511800 chr2D 91.379 58 3 2 784 841 571885093 571885148 1.170000e-10 78.7
43 TraesCS3A01G511800 chr5D 90.062 322 9 10 3586 3890 565180229 565179914 2.850000e-106 396.0
44 TraesCS3A01G511800 chr5D 92.593 54 2 2 784 837 448144557 448144506 4.220000e-10 76.8
45 TraesCS3A01G511800 chr4B 87.805 205 9 1 3746 3934 14620938 14620734 3.960000e-55 226.0
46 TraesCS3A01G511800 chr4B 94.545 55 2 1 783 837 482128804 482128857 2.520000e-12 84.2
47 TraesCS3A01G511800 chr6B 85.714 203 17 2 3744 3934 84818064 84818266 1.850000e-48 204.0
48 TraesCS3A01G511800 chr1B 79.558 181 29 7 2067 2240 499896509 499896688 5.340000e-24 122.0
49 TraesCS3A01G511800 chr1A 79.444 180 31 5 2067 2240 474450712 474450533 5.340000e-24 122.0
50 TraesCS3A01G511800 chr2A 94.444 54 2 1 784 837 749634983 749635035 9.060000e-12 82.4
51 TraesCS3A01G511800 chr6A 89.831 59 4 2 779 837 502943291 502943347 1.520000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G511800 chr3A 731224516 731228449 3933 True 7265.000000 7265 100.00000 1 3934 1 chr3A.!!$R5 3933
1 TraesCS3A01G511800 chr3A 32250873 32254314 3441 True 2384.000000 4514 86.77950 1 3398 2 chr3A.!!$R6 3397
2 TraesCS3A01G511800 chr3A 32384232 32385899 1667 True 340.575000 462 84.71225 1917 3400 4 chr3A.!!$R7 1483
3 TraesCS3A01G511800 chr3B 616304948 616305729 781 True 900.000000 900 87.42100 1 787 1 chr3B.!!$R2 786
4 TraesCS3A01G511800 chr3B 40907492 40908938 1446 True 659.500000 859 85.32400 2013 3400 2 chr3B.!!$R4 1387
5 TraesCS3A01G511800 chr3B 40864451 40866951 2500 True 656.775000 1314 90.12950 1179 3400 4 chr3B.!!$R3 2221
6 TraesCS3A01G511800 chr3D 23172558 23175008 2450 True 458.520000 1147 89.61920 891 3183 5 chr3D.!!$R3 2292
7 TraesCS3A01G511800 chr3D 23194405 23196031 1626 True 423.933333 760 84.03800 1917 3400 3 chr3D.!!$R4 1483
8 TraesCS3A01G511800 chr4D 57683993 57684777 784 False 989.000000 989 89.38100 1 789 1 chr4D.!!$F1 788
9 TraesCS3A01G511800 chr4D 196237031 196237811 780 True 900.000000 900 87.45200 1 787 1 chr4D.!!$R1 786
10 TraesCS3A01G511800 chr5B 690989864 690990646 782 True 979.000000 979 89.21300 1 787 1 chr5B.!!$R1 786
11 TraesCS3A01G511800 chr7D 159649317 159650102 785 True 920.000000 920 87.76800 1 792 1 chr7D.!!$R2 791
12 TraesCS3A01G511800 chr1D 248252868 248253651 783 False 918.000000 918 87.83300 1 787 1 chr1D.!!$F2 786
13 TraesCS3A01G511800 chr7B 553216726 553217506 780 False 905.000000 905 87.54800 1 787 1 chr7B.!!$F1 786
14 TraesCS3A01G511800 chr7A 229837855 229838640 785 False 898.000000 898 87.24700 1 792 1 chr7A.!!$F1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 684 2.124411 GTAATGGAGGCTGGGTTAGGA 58.876 52.381 0.0 0.0 0.0 2.94 F
2186 2392 0.262876 TATCAGGCTCAGCTCAGGGA 59.737 55.000 0.0 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 2662 1.139654 GGCCAGCTGATCATGTAGACA 59.860 52.381 17.39 0.0 0.0 3.41 R
3400 3995 0.034616 GCTGAGCTGAGTGAGTGGTT 59.965 55.000 1.09 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 225 4.359434 TGTGGTTAGCAGTTCAATACCA 57.641 40.909 0.00 0.00 33.54 3.25
682 684 2.124411 GTAATGGAGGCTGGGTTAGGA 58.876 52.381 0.00 0.00 0.00 2.94
764 769 9.359653 TCTCCTATAAAGCTAATTAAGGTACGT 57.640 33.333 0.00 0.00 33.87 3.57
773 778 3.530265 ATTAAGGTACGTCATTGGCGA 57.470 42.857 18.82 0.00 0.00 5.54
870 876 4.919754 GCCTTAGTGAAAGCAATGAAGTTG 59.080 41.667 0.00 0.00 40.90 3.16
871 877 5.278463 GCCTTAGTGAAAGCAATGAAGTTGA 60.278 40.000 0.00 0.00 39.63 3.18
872 878 6.571150 GCCTTAGTGAAAGCAATGAAGTTGAT 60.571 38.462 0.00 0.00 38.26 2.57
873 879 7.025963 CCTTAGTGAAAGCAATGAAGTTGATC 58.974 38.462 0.00 0.00 34.86 2.92
1001 1025 1.078497 GATCACACCCCATCGCACA 60.078 57.895 0.00 0.00 0.00 4.57
1008 1032 0.620556 ACCCCATCGCACATTTCTCT 59.379 50.000 0.00 0.00 0.00 3.10
1012 1036 2.096496 CCCATCGCACATTTCTCTTGTC 59.904 50.000 0.00 0.00 0.00 3.18
1105 1133 4.766375 TCCTTGTACCATTGCTAAGCTAC 58.234 43.478 0.00 0.00 0.00 3.58
1134 1180 7.048629 TCAAAGCCATCTTGTTGTATTTCAA 57.951 32.000 0.00 0.00 31.78 2.69
1280 1329 4.323477 GTGTGTACAGGCGCCCCA 62.323 66.667 26.15 12.48 0.00 4.96
1481 1533 2.041922 CGGATCTGGGGGAGGACA 60.042 66.667 0.00 0.00 0.00 4.02
1482 1534 2.435693 CGGATCTGGGGGAGGACAC 61.436 68.421 0.00 0.00 0.00 3.67
1604 1656 3.991051 CACCGTGCGTGAGGGAGT 61.991 66.667 2.79 0.00 46.20 3.85
1605 1657 3.991051 ACCGTGCGTGAGGGAGTG 61.991 66.667 2.79 0.00 33.43 3.51
1606 1658 4.742201 CCGTGCGTGAGGGAGTGG 62.742 72.222 0.00 0.00 0.00 4.00
1607 1659 3.680786 CGTGCGTGAGGGAGTGGA 61.681 66.667 0.00 0.00 0.00 4.02
1608 1660 2.048127 GTGCGTGAGGGAGTGGAC 60.048 66.667 0.00 0.00 0.00 4.02
1618 1670 1.906824 GGAGTGGACAGTGGACCGA 60.907 63.158 0.00 0.00 0.00 4.69
1857 1931 6.051074 CCATCTATGTCATGCACAAGACTAA 58.949 40.000 14.51 4.69 38.97 2.24
1858 1932 6.018425 CCATCTATGTCATGCACAAGACTAAC 60.018 42.308 14.51 0.00 38.97 2.34
1863 1937 6.102663 ATGTCATGCACAAGACTAACTAGTC 58.897 40.000 14.51 8.57 43.84 2.59
1988 2131 4.657504 TCACTAGGAATTGATGAGATGGCT 59.342 41.667 0.00 0.00 0.00 4.75
2059 2265 2.183679 TGTTCTTTGGCCAGGTTGTTT 58.816 42.857 5.11 0.00 0.00 2.83
2101 2307 2.556559 CGGAAAAGGGGATTGGAGGAAA 60.557 50.000 0.00 0.00 0.00 3.13
2186 2392 0.262876 TATCAGGCTCAGCTCAGGGA 59.737 55.000 0.00 0.00 0.00 4.20
2435 2653 1.829533 CAAGGCCTGCAGTGTGGTT 60.830 57.895 5.69 0.00 0.00 3.67
2437 2655 1.999634 AAGGCCTGCAGTGTGGTTCT 62.000 55.000 5.69 0.00 0.00 3.01
2438 2656 1.968540 GGCCTGCAGTGTGGTTCTC 60.969 63.158 13.81 0.00 0.00 2.87
2439 2657 1.072159 GCCTGCAGTGTGGTTCTCT 59.928 57.895 13.81 0.00 0.00 3.10
2440 2658 0.321671 GCCTGCAGTGTGGTTCTCTA 59.678 55.000 13.81 0.00 0.00 2.43
2441 2659 1.941668 GCCTGCAGTGTGGTTCTCTAC 60.942 57.143 13.81 0.00 0.00 2.59
2442 2660 1.344438 CCTGCAGTGTGGTTCTCTACA 59.656 52.381 13.81 0.00 32.81 2.74
2443 2661 2.224281 CCTGCAGTGTGGTTCTCTACAA 60.224 50.000 13.81 0.00 36.84 2.41
2444 2662 3.557898 CCTGCAGTGTGGTTCTCTACAAT 60.558 47.826 13.81 0.00 36.84 2.71
2536 2777 4.955811 TGTCTAGTGTAATATGGCCCTG 57.044 45.455 0.00 0.00 0.00 4.45
2564 2805 8.712285 TGTAGTTTCACTGCCTGTATTATTAC 57.288 34.615 0.00 0.00 29.18 1.89
2649 2954 3.522553 GTGATGCTTGGTAGTAGTCCAC 58.477 50.000 0.00 0.00 34.45 4.02
2679 2985 7.387673 TGTTGGTGTTGATACTGAGAATGTAAG 59.612 37.037 0.00 0.00 0.00 2.34
2724 3040 5.895928 TGATGCTGTAGTATCTTGAGACAC 58.104 41.667 10.56 0.00 37.90 3.67
2753 3069 6.442952 GGAATACTAGTGCTCAGTACTGATG 58.557 44.000 25.35 18.98 39.13 3.07
2820 3159 4.201891 GCTTTCTGGTCAGCTCATGTTATG 60.202 45.833 0.00 0.00 32.87 1.90
2892 3254 8.919777 TGATCTATCATTCATTCATTCAAGCT 57.080 30.769 0.00 0.00 0.00 3.74
2894 3256 9.613957 GATCTATCATTCATTCATTCAAGCTTG 57.386 33.333 20.81 20.81 0.00 4.01
2895 3257 7.423199 TCTATCATTCATTCATTCAAGCTTGC 58.577 34.615 21.99 0.00 0.00 4.01
2896 3258 4.417506 TCATTCATTCATTCAAGCTTGCG 58.582 39.130 21.99 12.21 0.00 4.85
2897 3259 2.267188 TCATTCATTCAAGCTTGCGC 57.733 45.000 21.99 0.00 0.00 6.09
2898 3260 1.135315 TCATTCATTCAAGCTTGCGCC 60.135 47.619 21.99 0.00 36.60 6.53
2899 3261 0.179156 ATTCATTCAAGCTTGCGCCG 60.179 50.000 21.99 9.76 36.60 6.46
2900 3262 1.514678 TTCATTCAAGCTTGCGCCGT 61.515 50.000 21.99 2.57 36.60 5.68
2901 3263 1.081242 CATTCAAGCTTGCGCCGTT 60.081 52.632 21.99 0.00 36.60 4.44
2902 3264 0.664166 CATTCAAGCTTGCGCCGTTT 60.664 50.000 21.99 0.00 36.60 3.60
2903 3265 0.387239 ATTCAAGCTTGCGCCGTTTC 60.387 50.000 21.99 0.00 36.60 2.78
2986 3366 2.875296 TCCAGCATTTACTTGCCTTGT 58.125 42.857 0.00 0.00 43.83 3.16
2991 3371 5.232463 CAGCATTTACTTGCCTTGTTCATT 58.768 37.500 0.00 0.00 43.83 2.57
3000 3380 5.105146 ACTTGCCTTGTTCATTTGGTTAACA 60.105 36.000 8.10 0.00 0.00 2.41
3002 3382 5.537188 TGCCTTGTTCATTTGGTTAACATC 58.463 37.500 8.10 0.00 33.44 3.06
3029 3445 3.056250 TGACCTTTGCATTGTTTGTGTGT 60.056 39.130 0.00 0.00 0.00 3.72
3031 3447 4.429108 ACCTTTGCATTGTTTGTGTGTAC 58.571 39.130 0.00 0.00 0.00 2.90
3043 3462 8.789825 TTGTTTGTGTGTACTTAAGTCCTAAA 57.210 30.769 12.39 4.21 0.00 1.85
3078 3499 8.658840 ATTCTTCTCTTGTATAGATCCCTACC 57.341 38.462 0.00 0.00 30.92 3.18
3092 3513 4.510167 TCCCTACCACCACTACTACTAC 57.490 50.000 0.00 0.00 0.00 2.73
3097 3518 6.327626 CCCTACCACCACTACTACTACTACTA 59.672 46.154 0.00 0.00 0.00 1.82
3098 3519 7.213678 CCTACCACCACTACTACTACTACTAC 58.786 46.154 0.00 0.00 0.00 2.73
3099 3520 5.995446 ACCACCACTACTACTACTACTACC 58.005 45.833 0.00 0.00 0.00 3.18
3100 3521 5.488919 ACCACCACTACTACTACTACTACCA 59.511 44.000 0.00 0.00 0.00 3.25
3101 3522 6.159398 ACCACCACTACTACTACTACTACCAT 59.841 42.308 0.00 0.00 0.00 3.55
3108 3627 9.558396 ACTACTACTACTACTACCATTGATGAC 57.442 37.037 0.00 0.00 0.00 3.06
3109 3628 7.820578 ACTACTACTACTACCATTGATGACC 57.179 40.000 0.00 0.00 0.00 4.02
3121 3688 2.336945 TGATGACCATGATGCTGGAC 57.663 50.000 0.00 0.00 39.73 4.02
3154 3721 6.770746 AATGGAATTGGAAATGAGTCAGAG 57.229 37.500 0.00 0.00 33.44 3.35
3218 3793 4.640364 TCCATCAACCTTTTGCAAAATCC 58.360 39.130 24.06 0.00 32.17 3.01
3252 3827 4.384098 CCTTTTTGGCCCTGTTCTTCTTTT 60.384 41.667 0.00 0.00 0.00 2.27
3253 3828 4.835284 TTTTGGCCCTGTTCTTCTTTTT 57.165 36.364 0.00 0.00 0.00 1.94
3260 3835 5.465051 GCCCTGTTCTTCTTTTTCTCATTC 58.535 41.667 0.00 0.00 0.00 2.67
3273 3848 5.649782 TTTCTCATTCAGAAAAGGCATCC 57.350 39.130 0.00 0.00 46.34 3.51
3309 3903 3.324846 ACAACAGTGGAGAATAGCACAGA 59.675 43.478 0.00 0.00 0.00 3.41
3321 3915 2.623915 GCACAGAGGGCAGCACTTG 61.624 63.158 0.00 1.68 0.00 3.16
3379 3974 1.410153 CTGGGTGCTTGTGCTTTTCTT 59.590 47.619 0.00 0.00 40.48 2.52
3400 3995 4.431416 TCCTCACCTTTTCTGCAAGTTA 57.569 40.909 0.00 0.00 33.76 2.24
3401 3996 4.787551 TCCTCACCTTTTCTGCAAGTTAA 58.212 39.130 0.00 0.00 33.76 2.01
3402 3997 4.578928 TCCTCACCTTTTCTGCAAGTTAAC 59.421 41.667 0.00 0.00 33.76 2.01
3403 3998 4.261614 CCTCACCTTTTCTGCAAGTTAACC 60.262 45.833 0.88 0.00 33.76 2.85
3404 3999 4.274147 TCACCTTTTCTGCAAGTTAACCA 58.726 39.130 0.88 0.00 33.76 3.67
3405 4000 4.097286 TCACCTTTTCTGCAAGTTAACCAC 59.903 41.667 0.88 0.00 33.76 4.16
3406 4001 4.097892 CACCTTTTCTGCAAGTTAACCACT 59.902 41.667 0.88 0.00 37.30 4.00
3407 4002 4.338400 ACCTTTTCTGCAAGTTAACCACTC 59.662 41.667 0.88 0.00 32.94 3.51
3408 4003 4.338118 CCTTTTCTGCAAGTTAACCACTCA 59.662 41.667 0.88 0.00 32.94 3.41
3409 4004 4.893424 TTTCTGCAAGTTAACCACTCAC 57.107 40.909 0.88 0.00 32.94 3.51
3410 4005 3.838244 TCTGCAAGTTAACCACTCACT 57.162 42.857 0.88 0.00 32.94 3.41
3411 4006 3.728845 TCTGCAAGTTAACCACTCACTC 58.271 45.455 0.88 0.00 32.94 3.51
3412 4007 3.133901 TCTGCAAGTTAACCACTCACTCA 59.866 43.478 0.88 0.00 32.94 3.41
3413 4008 3.466836 TGCAAGTTAACCACTCACTCAG 58.533 45.455 0.88 0.00 32.94 3.35
3414 4009 2.224314 GCAAGTTAACCACTCACTCAGC 59.776 50.000 0.88 0.00 32.94 4.26
3415 4010 3.733337 CAAGTTAACCACTCACTCAGCT 58.267 45.455 0.88 0.00 32.94 4.24
3416 4011 3.669251 AGTTAACCACTCACTCAGCTC 57.331 47.619 0.88 0.00 0.00 4.09
3417 4012 2.965831 AGTTAACCACTCACTCAGCTCA 59.034 45.455 0.88 0.00 0.00 4.26
3418 4013 3.006323 AGTTAACCACTCACTCAGCTCAG 59.994 47.826 0.88 0.00 0.00 3.35
3419 4014 0.034616 AACCACTCACTCAGCTCAGC 59.965 55.000 0.00 0.00 0.00 4.26
3420 4015 0.831288 ACCACTCACTCAGCTCAGCT 60.831 55.000 0.00 0.00 40.77 4.24
3421 4016 0.108709 CCACTCACTCAGCTCAGCTC 60.109 60.000 0.00 0.00 36.40 4.09
3422 4017 0.889994 CACTCACTCAGCTCAGCTCT 59.110 55.000 0.00 0.00 36.40 4.09
3423 4018 1.135315 CACTCACTCAGCTCAGCTCTC 60.135 57.143 0.00 0.00 36.40 3.20
3424 4019 1.272092 ACTCACTCAGCTCAGCTCTCT 60.272 52.381 0.00 0.00 36.40 3.10
3425 4020 1.133598 CTCACTCAGCTCAGCTCTCTG 59.866 57.143 0.00 0.00 36.40 3.35
3426 4021 1.175654 CACTCAGCTCAGCTCTCTGA 58.824 55.000 0.00 8.33 46.43 3.27
3436 4031 3.306613 TCAGCTCTCTGATGATGATGGT 58.693 45.455 0.00 0.00 43.95 3.55
3437 4032 3.069729 TCAGCTCTCTGATGATGATGGTG 59.930 47.826 0.00 0.00 43.95 4.17
3438 4033 3.069729 CAGCTCTCTGATGATGATGGTGA 59.930 47.826 0.00 0.00 42.95 4.02
3439 4034 3.904965 AGCTCTCTGATGATGATGGTGAT 59.095 43.478 0.00 0.00 0.00 3.06
3440 4035 3.997681 GCTCTCTGATGATGATGGTGATG 59.002 47.826 0.00 0.00 0.00 3.07
3441 4036 4.262506 GCTCTCTGATGATGATGGTGATGA 60.263 45.833 0.00 0.00 0.00 2.92
3442 4037 5.569832 GCTCTCTGATGATGATGGTGATGAT 60.570 44.000 0.00 0.00 0.00 2.45
3443 4038 6.038997 TCTCTGATGATGATGGTGATGATC 57.961 41.667 0.00 0.00 0.00 2.92
3444 4039 5.542635 TCTCTGATGATGATGGTGATGATCA 59.457 40.000 0.00 0.00 36.73 2.92
3445 4040 6.213600 TCTCTGATGATGATGGTGATGATCAT 59.786 38.462 8.25 8.25 43.33 2.45
3446 4041 6.173339 TCTGATGATGATGGTGATGATCATG 58.827 40.000 14.30 0.00 41.44 3.07
3447 4042 6.013725 TCTGATGATGATGGTGATGATCATGA 60.014 38.462 14.30 0.44 41.44 3.07
3448 4043 6.721318 TGATGATGATGGTGATGATCATGAT 58.279 36.000 14.30 8.25 41.44 2.45
3449 4044 6.823689 TGATGATGATGGTGATGATCATGATC 59.176 38.462 25.91 25.91 41.44 2.92
3450 4045 6.721318 ATGATGATGGTGATGATCATGATCA 58.279 36.000 34.35 34.35 44.41 2.92
3463 4058 4.635699 TCATGATCATGATGGAGGGAAG 57.364 45.455 30.27 4.76 42.42 3.46
3464 4059 2.945080 TGATCATGATGGAGGGAAGC 57.055 50.000 14.30 0.00 0.00 3.86
3465 4060 2.415624 TGATCATGATGGAGGGAAGCT 58.584 47.619 14.30 0.00 0.00 3.74
3466 4061 2.781757 TGATCATGATGGAGGGAAGCTT 59.218 45.455 14.30 0.00 0.00 3.74
3467 4062 3.181447 TGATCATGATGGAGGGAAGCTTC 60.181 47.826 18.54 18.54 0.00 3.86
3468 4063 2.485659 TCATGATGGAGGGAAGCTTCT 58.514 47.619 25.05 7.19 0.00 2.85
3469 4064 2.172082 TCATGATGGAGGGAAGCTTCTG 59.828 50.000 25.05 12.50 0.00 3.02
3470 4065 0.914644 TGATGGAGGGAAGCTTCTGG 59.085 55.000 25.05 0.00 0.00 3.86
3471 4066 0.182299 GATGGAGGGAAGCTTCTGGG 59.818 60.000 25.05 0.00 0.00 4.45
3472 4067 0.253347 ATGGAGGGAAGCTTCTGGGA 60.253 55.000 25.05 7.22 0.00 4.37
3473 4068 0.911525 TGGAGGGAAGCTTCTGGGAG 60.912 60.000 25.05 0.00 0.00 4.30
3474 4069 1.631071 GGAGGGAAGCTTCTGGGAGG 61.631 65.000 25.05 0.00 0.00 4.30
3475 4070 0.618968 GAGGGAAGCTTCTGGGAGGA 60.619 60.000 25.05 0.00 0.00 3.71
3476 4071 0.178861 AGGGAAGCTTCTGGGAGGAA 60.179 55.000 25.05 0.00 0.00 3.36
3477 4072 0.254462 GGGAAGCTTCTGGGAGGAAG 59.746 60.000 25.05 0.00 43.80 3.46
3481 4076 3.713650 CTTCTGGGAGGAAGCCGA 58.286 61.111 0.00 0.00 36.68 5.54
3482 4077 1.519719 CTTCTGGGAGGAAGCCGAG 59.480 63.158 0.00 0.00 36.68 4.63
3483 4078 0.972983 CTTCTGGGAGGAAGCCGAGA 60.973 60.000 0.00 0.00 40.45 4.04
3484 4079 0.972983 TTCTGGGAGGAAGCCGAGAG 60.973 60.000 0.00 0.00 42.58 3.20
3504 4099 2.877975 CCTCAAGGCCATGGACAAG 58.122 57.895 22.78 13.89 0.00 3.16
3505 4100 0.682209 CCTCAAGGCCATGGACAAGG 60.682 60.000 22.78 19.18 0.00 3.61
3518 4113 7.053316 CCATGGACAAGGCATATTAAAATCA 57.947 36.000 5.56 0.00 0.00 2.57
3519 4114 7.673180 CCATGGACAAGGCATATTAAAATCAT 58.327 34.615 5.56 0.00 0.00 2.45
3520 4115 8.152246 CCATGGACAAGGCATATTAAAATCATT 58.848 33.333 5.56 0.00 0.00 2.57
3521 4116 9.199982 CATGGACAAGGCATATTAAAATCATTC 57.800 33.333 0.00 0.00 0.00 2.67
3522 4117 8.303780 TGGACAAGGCATATTAAAATCATTCA 57.696 30.769 0.00 0.00 0.00 2.57
3523 4118 8.415553 TGGACAAGGCATATTAAAATCATTCAG 58.584 33.333 0.00 0.00 0.00 3.02
3524 4119 7.383300 GGACAAGGCATATTAAAATCATTCAGC 59.617 37.037 0.00 0.00 0.00 4.26
3525 4120 8.015185 ACAAGGCATATTAAAATCATTCAGCT 57.985 30.769 0.00 0.00 0.00 4.24
3526 4121 7.924412 ACAAGGCATATTAAAATCATTCAGCTG 59.076 33.333 7.63 7.63 0.00 4.24
3527 4122 7.592885 AGGCATATTAAAATCATTCAGCTGT 57.407 32.000 14.67 0.00 0.00 4.40
3528 4123 7.431249 AGGCATATTAAAATCATTCAGCTGTG 58.569 34.615 14.67 5.73 0.00 3.66
3529 4124 6.145048 GGCATATTAAAATCATTCAGCTGTGC 59.855 38.462 14.67 10.41 0.00 4.57
3530 4125 6.698329 GCATATTAAAATCATTCAGCTGTGCA 59.302 34.615 14.67 0.00 0.00 4.57
3531 4126 7.384115 GCATATTAAAATCATTCAGCTGTGCAT 59.616 33.333 14.67 1.71 0.00 3.96
3532 4127 8.912658 CATATTAAAATCATTCAGCTGTGCATC 58.087 33.333 14.67 0.00 0.00 3.91
3533 4128 4.794278 AAAATCATTCAGCTGTGCATCA 57.206 36.364 14.67 0.00 0.00 3.07
3534 4129 4.794278 AAATCATTCAGCTGTGCATCAA 57.206 36.364 14.67 0.00 0.00 2.57
3535 4130 4.371855 AATCATTCAGCTGTGCATCAAG 57.628 40.909 14.67 0.00 0.00 3.02
3536 4131 1.471287 TCATTCAGCTGTGCATCAAGC 59.529 47.619 14.67 10.14 45.96 4.01
3554 4149 3.532155 GCGAGCACTCCTCCCGAT 61.532 66.667 0.00 0.00 37.27 4.18
3555 4150 2.415010 CGAGCACTCCTCCCGATG 59.585 66.667 0.00 0.00 37.27 3.84
3556 4151 2.418910 CGAGCACTCCTCCCGATGT 61.419 63.158 0.00 0.00 37.27 3.06
3557 4152 1.439644 GAGCACTCCTCCCGATGTC 59.560 63.158 0.00 0.00 34.35 3.06
3558 4153 2.022240 GAGCACTCCTCCCGATGTCC 62.022 65.000 0.00 0.00 34.35 4.02
3559 4154 2.359169 GCACTCCTCCCGATGTCCA 61.359 63.158 0.00 0.00 0.00 4.02
3560 4155 1.517832 CACTCCTCCCGATGTCCAC 59.482 63.158 0.00 0.00 0.00 4.02
3561 4156 2.052690 ACTCCTCCCGATGTCCACG 61.053 63.158 0.00 0.00 0.00 4.94
3562 4157 2.036731 TCCTCCCGATGTCCACGT 59.963 61.111 0.00 0.00 0.00 4.49
3563 4158 2.005960 CTCCTCCCGATGTCCACGTC 62.006 65.000 0.00 0.00 0.00 4.34
3573 4168 3.587095 TCCACGTCGGACTAGCTG 58.413 61.111 6.57 0.00 39.64 4.24
3574 4169 2.044555 TCCACGTCGGACTAGCTGG 61.045 63.158 6.57 0.00 39.64 4.85
3575 4170 2.044555 CCACGTCGGACTAGCTGGA 61.045 63.158 3.17 0.00 36.56 3.86
3576 4171 1.592400 CCACGTCGGACTAGCTGGAA 61.592 60.000 3.17 0.00 36.56 3.53
3577 4172 0.179161 CACGTCGGACTAGCTGGAAG 60.179 60.000 3.17 0.00 0.00 3.46
3578 4173 0.322277 ACGTCGGACTAGCTGGAAGA 60.322 55.000 3.17 0.00 34.07 2.87
3579 4174 0.099082 CGTCGGACTAGCTGGAAGAC 59.901 60.000 3.17 8.92 34.07 3.01
3580 4175 1.174783 GTCGGACTAGCTGGAAGACA 58.825 55.000 3.17 0.00 34.07 3.41
3581 4176 1.544691 GTCGGACTAGCTGGAAGACAA 59.455 52.381 3.17 0.00 34.07 3.18
3582 4177 2.029290 GTCGGACTAGCTGGAAGACAAA 60.029 50.000 3.17 0.00 34.07 2.83
3583 4178 2.631062 TCGGACTAGCTGGAAGACAAAA 59.369 45.455 3.17 0.00 34.07 2.44
3584 4179 3.070446 TCGGACTAGCTGGAAGACAAAAA 59.930 43.478 3.17 0.00 34.07 1.94
3585 4180 3.433615 CGGACTAGCTGGAAGACAAAAAG 59.566 47.826 3.17 0.00 34.07 2.27
3586 4181 4.642429 GGACTAGCTGGAAGACAAAAAGA 58.358 43.478 3.17 0.00 34.07 2.52
3587 4182 4.693095 GGACTAGCTGGAAGACAAAAAGAG 59.307 45.833 3.17 0.00 34.07 2.85
3588 4183 4.068599 ACTAGCTGGAAGACAAAAAGAGC 58.931 43.478 3.17 0.00 34.07 4.09
3589 4184 2.936202 AGCTGGAAGACAAAAAGAGCA 58.064 42.857 0.00 0.00 34.07 4.26
3590 4185 3.290710 AGCTGGAAGACAAAAAGAGCAA 58.709 40.909 0.00 0.00 34.07 3.91
3591 4186 3.317430 AGCTGGAAGACAAAAAGAGCAAG 59.683 43.478 0.00 0.00 34.07 4.01
3592 4187 3.316308 GCTGGAAGACAAAAAGAGCAAGA 59.684 43.478 0.00 0.00 34.07 3.02
3593 4188 4.556302 GCTGGAAGACAAAAAGAGCAAGAG 60.556 45.833 0.00 0.00 34.07 2.85
3594 4189 3.885297 TGGAAGACAAAAAGAGCAAGAGG 59.115 43.478 0.00 0.00 0.00 3.69
3595 4190 3.254411 GGAAGACAAAAAGAGCAAGAGGG 59.746 47.826 0.00 0.00 0.00 4.30
3596 4191 3.864789 AGACAAAAAGAGCAAGAGGGA 57.135 42.857 0.00 0.00 0.00 4.20
3597 4192 3.749226 AGACAAAAAGAGCAAGAGGGAG 58.251 45.455 0.00 0.00 0.00 4.30
3598 4193 2.816672 GACAAAAAGAGCAAGAGGGAGG 59.183 50.000 0.00 0.00 0.00 4.30
3599 4194 2.443255 ACAAAAAGAGCAAGAGGGAGGA 59.557 45.455 0.00 0.00 0.00 3.71
3600 4195 3.117512 ACAAAAAGAGCAAGAGGGAGGAA 60.118 43.478 0.00 0.00 0.00 3.36
3601 4196 3.431673 AAAAGAGCAAGAGGGAGGAAG 57.568 47.619 0.00 0.00 0.00 3.46
3602 4197 2.037385 AAGAGCAAGAGGGAGGAAGT 57.963 50.000 0.00 0.00 0.00 3.01
3603 4198 2.037385 AGAGCAAGAGGGAGGAAGTT 57.963 50.000 0.00 0.00 0.00 2.66
3604 4199 1.627834 AGAGCAAGAGGGAGGAAGTTG 59.372 52.381 0.00 0.00 0.00 3.16
3605 4200 0.037447 AGCAAGAGGGAGGAAGTTGC 59.963 55.000 0.00 0.00 43.11 4.17
3606 4201 0.962855 GCAAGAGGGAGGAAGTTGCC 60.963 60.000 0.00 0.00 38.03 4.52
3607 4202 0.695347 CAAGAGGGAGGAAGTTGCCT 59.305 55.000 0.00 0.00 42.17 4.75
3612 4207 4.193653 GAGGAAGTTGCCTCGAGC 57.806 61.111 6.99 3.23 44.52 5.03
3613 4208 1.448717 GAGGAAGTTGCCTCGAGCC 60.449 63.158 6.99 0.00 44.52 4.70
3614 4209 2.436824 GGAAGTTGCCTCGAGCCC 60.437 66.667 6.99 0.16 42.71 5.19
3615 4210 2.436824 GAAGTTGCCTCGAGCCCC 60.437 66.667 6.99 0.00 42.71 5.80
3616 4211 3.249189 AAGTTGCCTCGAGCCCCA 61.249 61.111 6.99 0.40 42.71 4.96
3617 4212 3.553095 AAGTTGCCTCGAGCCCCAC 62.553 63.158 6.99 2.28 42.71 4.61
3623 4218 3.787001 CTCGAGCCCCACCCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
3626 4221 2.941583 GAGCCCCACCCCTTCCTT 60.942 66.667 0.00 0.00 0.00 3.36
3627 4222 1.618447 GAGCCCCACCCCTTCCTTA 60.618 63.158 0.00 0.00 0.00 2.69
3628 4223 0.994050 GAGCCCCACCCCTTCCTTAT 60.994 60.000 0.00 0.00 0.00 1.73
3629 4224 0.994050 AGCCCCACCCCTTCCTTATC 60.994 60.000 0.00 0.00 0.00 1.75
3630 4225 2.008006 GCCCCACCCCTTCCTTATCC 62.008 65.000 0.00 0.00 0.00 2.59
3631 4226 0.328548 CCCCACCCCTTCCTTATCCT 60.329 60.000 0.00 0.00 0.00 3.24
3632 4227 1.608425 CCCACCCCTTCCTTATCCTT 58.392 55.000 0.00 0.00 0.00 3.36
3633 4228 1.930204 CCCACCCCTTCCTTATCCTTT 59.070 52.381 0.00 0.00 0.00 3.11
3634 4229 2.091830 CCCACCCCTTCCTTATCCTTTC 60.092 54.545 0.00 0.00 0.00 2.62
3635 4230 2.091830 CCACCCCTTCCTTATCCTTTCC 60.092 54.545 0.00 0.00 0.00 3.13
3636 4231 2.853077 CACCCCTTCCTTATCCTTTCCT 59.147 50.000 0.00 0.00 0.00 3.36
3637 4232 3.117851 CACCCCTTCCTTATCCTTTCCTC 60.118 52.174 0.00 0.00 0.00 3.71
3638 4233 2.443632 CCCCTTCCTTATCCTTTCCTCC 59.556 54.545 0.00 0.00 0.00 4.30
3639 4234 3.123273 CCCTTCCTTATCCTTTCCTCCA 58.877 50.000 0.00 0.00 0.00 3.86
3640 4235 3.527665 CCCTTCCTTATCCTTTCCTCCAA 59.472 47.826 0.00 0.00 0.00 3.53
3641 4236 4.017499 CCCTTCCTTATCCTTTCCTCCAAA 60.017 45.833 0.00 0.00 0.00 3.28
3642 4237 5.518367 CCCTTCCTTATCCTTTCCTCCAAAA 60.518 44.000 0.00 0.00 0.00 2.44
3643 4238 6.197903 CCTTCCTTATCCTTTCCTCCAAAAT 58.802 40.000 0.00 0.00 0.00 1.82
3644 4239 6.669591 CCTTCCTTATCCTTTCCTCCAAAATT 59.330 38.462 0.00 0.00 0.00 1.82
3645 4240 7.180946 CCTTCCTTATCCTTTCCTCCAAAATTT 59.819 37.037 0.00 0.00 0.00 1.82
3646 4241 7.718334 TCCTTATCCTTTCCTCCAAAATTTC 57.282 36.000 0.00 0.00 0.00 2.17
3647 4242 7.245292 TCCTTATCCTTTCCTCCAAAATTTCA 58.755 34.615 0.00 0.00 0.00 2.69
3648 4243 7.178451 TCCTTATCCTTTCCTCCAAAATTTCAC 59.822 37.037 0.00 0.00 0.00 3.18
3649 4244 7.039082 CCTTATCCTTTCCTCCAAAATTTCACA 60.039 37.037 0.00 0.00 0.00 3.58
3650 4245 6.940430 ATCCTTTCCTCCAAAATTTCACAT 57.060 33.333 0.00 0.00 0.00 3.21
3651 4246 6.345096 TCCTTTCCTCCAAAATTTCACATC 57.655 37.500 0.00 0.00 0.00 3.06
3652 4247 5.048083 TCCTTTCCTCCAAAATTTCACATCG 60.048 40.000 0.00 0.00 0.00 3.84
3653 4248 3.848272 TCCTCCAAAATTTCACATCGC 57.152 42.857 0.00 0.00 0.00 4.58
3654 4249 3.153130 TCCTCCAAAATTTCACATCGCA 58.847 40.909 0.00 0.00 0.00 5.10
3655 4250 3.057596 TCCTCCAAAATTTCACATCGCAC 60.058 43.478 0.00 0.00 0.00 5.34
3656 4251 2.910482 CTCCAAAATTTCACATCGCACG 59.090 45.455 0.00 0.00 0.00 5.34
3657 4252 1.386412 CCAAAATTTCACATCGCACGC 59.614 47.619 0.00 0.00 0.00 5.34
3658 4253 2.049959 CAAAATTTCACATCGCACGCA 58.950 42.857 0.00 0.00 0.00 5.24
3659 4254 2.414058 AAATTTCACATCGCACGCAA 57.586 40.000 0.00 0.00 0.00 4.85
3660 4255 1.685302 AATTTCACATCGCACGCAAC 58.315 45.000 0.00 0.00 0.00 4.17
3661 4256 0.109781 ATTTCACATCGCACGCAACC 60.110 50.000 0.00 0.00 0.00 3.77
3662 4257 1.163420 TTTCACATCGCACGCAACCT 61.163 50.000 0.00 0.00 0.00 3.50
3663 4258 1.163420 TTCACATCGCACGCAACCTT 61.163 50.000 0.00 0.00 0.00 3.50
3664 4259 1.154413 CACATCGCACGCAACCTTC 60.154 57.895 0.00 0.00 0.00 3.46
3665 4260 1.301716 ACATCGCACGCAACCTTCT 60.302 52.632 0.00 0.00 0.00 2.85
3666 4261 1.291877 ACATCGCACGCAACCTTCTC 61.292 55.000 0.00 0.00 0.00 2.87
3667 4262 1.016130 CATCGCACGCAACCTTCTCT 61.016 55.000 0.00 0.00 0.00 3.10
3668 4263 0.737715 ATCGCACGCAACCTTCTCTC 60.738 55.000 0.00 0.00 0.00 3.20
3669 4264 2.720758 CGCACGCAACCTTCTCTCG 61.721 63.158 0.00 0.00 0.00 4.04
3670 4265 1.664965 GCACGCAACCTTCTCTCGT 60.665 57.895 0.00 0.00 0.00 4.18
3671 4266 2.145225 CACGCAACCTTCTCTCGTG 58.855 57.895 0.00 0.00 43.19 4.35
3672 4267 2.038690 ACGCAACCTTCTCTCGTGA 58.961 52.632 0.00 0.00 31.74 4.35
3673 4268 0.318784 ACGCAACCTTCTCTCGTGAC 60.319 55.000 0.00 0.00 31.74 3.67
3674 4269 1.337817 CGCAACCTTCTCTCGTGACG 61.338 60.000 0.00 0.00 0.00 4.35
3675 4270 1.618640 GCAACCTTCTCTCGTGACGC 61.619 60.000 0.00 0.00 0.00 5.19
3676 4271 1.009389 CAACCTTCTCTCGTGACGCC 61.009 60.000 0.00 0.00 0.00 5.68
3677 4272 2.202492 CCTTCTCTCGTGACGCCG 60.202 66.667 0.00 0.00 0.00 6.46
3678 4273 2.876645 CTTCTCTCGTGACGCCGC 60.877 66.667 0.00 0.00 0.00 6.53
3679 4274 4.415332 TTCTCTCGTGACGCCGCC 62.415 66.667 0.00 0.00 0.00 6.13
3695 4290 4.214327 CCGCCGCCTCCTCTTCTC 62.214 72.222 0.00 0.00 0.00 2.87
3696 4291 3.144193 CGCCGCCTCCTCTTCTCT 61.144 66.667 0.00 0.00 0.00 3.10
3697 4292 2.811799 GCCGCCTCCTCTTCTCTC 59.188 66.667 0.00 0.00 0.00 3.20
3698 4293 2.791868 GCCGCCTCCTCTTCTCTCC 61.792 68.421 0.00 0.00 0.00 3.71
3699 4294 2.131067 CCGCCTCCTCTTCTCTCCC 61.131 68.421 0.00 0.00 0.00 4.30
3700 4295 2.131067 CGCCTCCTCTTCTCTCCCC 61.131 68.421 0.00 0.00 0.00 4.81
3701 4296 1.764454 GCCTCCTCTTCTCTCCCCC 60.764 68.421 0.00 0.00 0.00 5.40
3702 4297 1.456705 CCTCCTCTTCTCTCCCCCG 60.457 68.421 0.00 0.00 0.00 5.73
3703 4298 1.615814 CTCCTCTTCTCTCCCCCGA 59.384 63.158 0.00 0.00 0.00 5.14
3704 4299 0.187361 CTCCTCTTCTCTCCCCCGAT 59.813 60.000 0.00 0.00 0.00 4.18
3705 4300 0.637195 TCCTCTTCTCTCCCCCGATT 59.363 55.000 0.00 0.00 0.00 3.34
3706 4301 1.044611 CCTCTTCTCTCCCCCGATTC 58.955 60.000 0.00 0.00 0.00 2.52
3707 4302 1.412361 CCTCTTCTCTCCCCCGATTCT 60.412 57.143 0.00 0.00 0.00 2.40
3708 4303 1.960689 CTCTTCTCTCCCCCGATTCTC 59.039 57.143 0.00 0.00 0.00 2.87
3709 4304 1.044611 CTTCTCTCCCCCGATTCTCC 58.955 60.000 0.00 0.00 0.00 3.71
3710 4305 0.637195 TTCTCTCCCCCGATTCTCCT 59.363 55.000 0.00 0.00 0.00 3.69
3711 4306 0.186386 TCTCTCCCCCGATTCTCCTC 59.814 60.000 0.00 0.00 0.00 3.71
3712 4307 1.152735 TCTCCCCCGATTCTCCTCG 60.153 63.158 0.00 0.00 38.37 4.63
3713 4308 2.838225 TCCCCCGATTCTCCTCGC 60.838 66.667 0.00 0.00 37.33 5.03
3714 4309 4.286320 CCCCCGATTCTCCTCGCG 62.286 72.222 0.00 0.00 37.33 5.87
3715 4310 3.217017 CCCCGATTCTCCTCGCGA 61.217 66.667 9.26 9.26 37.33 5.87
3716 4311 2.026301 CCCGATTCTCCTCGCGAC 59.974 66.667 3.71 0.00 37.33 5.19
3717 4312 2.482333 CCCGATTCTCCTCGCGACT 61.482 63.158 3.71 0.00 37.33 4.18
3718 4313 1.298713 CCGATTCTCCTCGCGACTG 60.299 63.158 3.71 0.00 37.33 3.51
3719 4314 1.941734 CGATTCTCCTCGCGACTGC 60.942 63.158 3.71 0.00 37.91 4.40
3720 4315 1.435515 GATTCTCCTCGCGACTGCT 59.564 57.895 3.71 0.00 39.65 4.24
3721 4316 0.593773 GATTCTCCTCGCGACTGCTC 60.594 60.000 3.71 0.00 39.65 4.26
3722 4317 2.010582 ATTCTCCTCGCGACTGCTCC 62.011 60.000 3.71 0.00 39.65 4.70
3723 4318 4.544689 CTCCTCGCGACTGCTCCG 62.545 72.222 3.71 0.00 39.65 4.63
3725 4320 4.544689 CCTCGCGACTGCTCCGAG 62.545 72.222 3.71 2.58 45.77 4.63
3731 4326 3.844090 GACTGCTCCGAGCCCCTC 61.844 72.222 17.81 5.71 41.51 4.30
3735 4330 4.851214 GCTCCGAGCCCCTCCTCT 62.851 72.222 9.42 0.00 34.48 3.69
3736 4331 2.042435 CTCCGAGCCCCTCCTCTT 60.042 66.667 0.00 0.00 0.00 2.85
3737 4332 2.042843 TCCGAGCCCCTCCTCTTC 60.043 66.667 0.00 0.00 0.00 2.87
3738 4333 3.157949 CCGAGCCCCTCCTCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
3739 4334 3.157949 CGAGCCCCTCCTCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
3740 4335 2.370633 GAGCCCCTCCTCTTCCCT 59.629 66.667 0.00 0.00 0.00 4.20
3741 4336 2.041928 AGCCCCTCCTCTTCCCTG 59.958 66.667 0.00 0.00 0.00 4.45
3742 4337 2.285743 GCCCCTCCTCTTCCCTGT 60.286 66.667 0.00 0.00 0.00 4.00
3743 4338 2.674220 GCCCCTCCTCTTCCCTGTG 61.674 68.421 0.00 0.00 0.00 3.66
3744 4339 1.229658 CCCCTCCTCTTCCCTGTGT 60.230 63.158 0.00 0.00 0.00 3.72
3745 4340 1.268283 CCCCTCCTCTTCCCTGTGTC 61.268 65.000 0.00 0.00 0.00 3.67
3746 4341 1.608717 CCCTCCTCTTCCCTGTGTCG 61.609 65.000 0.00 0.00 0.00 4.35
3747 4342 1.608717 CCTCCTCTTCCCTGTGTCGG 61.609 65.000 0.00 0.00 0.00 4.79
3748 4343 2.232298 CTCCTCTTCCCTGTGTCGGC 62.232 65.000 0.00 0.00 0.00 5.54
3749 4344 2.286523 CCTCTTCCCTGTGTCGGCT 61.287 63.158 0.00 0.00 0.00 5.52
3750 4345 1.079543 CTCTTCCCTGTGTCGGCTG 60.080 63.158 0.00 0.00 0.00 4.85
3751 4346 2.743928 CTTCCCTGTGTCGGCTGC 60.744 66.667 0.00 0.00 0.00 5.25
3752 4347 3.241530 TTCCCTGTGTCGGCTGCT 61.242 61.111 0.00 0.00 0.00 4.24
3753 4348 3.240134 TTCCCTGTGTCGGCTGCTC 62.240 63.158 0.00 0.00 0.00 4.26
3755 4350 4.056125 CCTGTGTCGGCTGCTCGA 62.056 66.667 8.74 8.74 36.76 4.04
3786 4381 4.069232 CGCTGCGGGAGAAGGTGA 62.069 66.667 15.40 0.00 35.43 4.02
3787 4382 2.347490 GCTGCGGGAGAAGGTGAA 59.653 61.111 0.00 0.00 35.43 3.18
3788 4383 2.035442 GCTGCGGGAGAAGGTGAAC 61.035 63.158 0.00 0.00 35.43 3.18
3789 4384 1.371183 CTGCGGGAGAAGGTGAACA 59.629 57.895 0.00 0.00 0.00 3.18
3790 4385 0.951040 CTGCGGGAGAAGGTGAACAC 60.951 60.000 0.00 0.00 0.00 3.32
3791 4386 2.027625 GCGGGAGAAGGTGAACACG 61.028 63.158 0.00 0.00 0.00 4.49
3792 4387 1.663739 CGGGAGAAGGTGAACACGA 59.336 57.895 0.00 0.00 0.00 4.35
3793 4388 0.388649 CGGGAGAAGGTGAACACGAG 60.389 60.000 0.00 0.00 0.00 4.18
3794 4389 0.037232 GGGAGAAGGTGAACACGAGG 60.037 60.000 0.00 0.00 0.00 4.63
3795 4390 0.966920 GGAGAAGGTGAACACGAGGA 59.033 55.000 0.00 0.00 0.00 3.71
3796 4391 1.067495 GGAGAAGGTGAACACGAGGAG 60.067 57.143 0.00 0.00 0.00 3.69
3797 4392 1.887198 GAGAAGGTGAACACGAGGAGA 59.113 52.381 0.00 0.00 0.00 3.71
3798 4393 2.494073 GAGAAGGTGAACACGAGGAGAT 59.506 50.000 0.00 0.00 0.00 2.75
3799 4394 2.232452 AGAAGGTGAACACGAGGAGATG 59.768 50.000 0.00 0.00 0.00 2.90
3800 4395 0.247736 AGGTGAACACGAGGAGATGC 59.752 55.000 0.00 0.00 0.00 3.91
3801 4396 0.037326 GGTGAACACGAGGAGATGCA 60.037 55.000 0.00 0.00 0.00 3.96
3802 4397 1.354040 GTGAACACGAGGAGATGCAG 58.646 55.000 0.00 0.00 0.00 4.41
3803 4398 0.247460 TGAACACGAGGAGATGCAGG 59.753 55.000 0.00 0.00 0.00 4.85
3804 4399 0.460987 GAACACGAGGAGATGCAGGG 60.461 60.000 0.00 0.00 0.00 4.45
3805 4400 1.194781 AACACGAGGAGATGCAGGGT 61.195 55.000 0.00 0.00 0.00 4.34
3806 4401 1.153489 CACGAGGAGATGCAGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
3807 4402 2.362369 ACGAGGAGATGCAGGGTGG 61.362 63.158 0.00 0.00 0.00 4.61
3808 4403 2.914289 GAGGAGATGCAGGGTGGG 59.086 66.667 0.00 0.00 0.00 4.61
3809 4404 1.997874 GAGGAGATGCAGGGTGGGT 60.998 63.158 0.00 0.00 0.00 4.51
3810 4405 2.262774 GAGGAGATGCAGGGTGGGTG 62.263 65.000 0.00 0.00 0.00 4.61
3811 4406 2.273449 GAGATGCAGGGTGGGTGG 59.727 66.667 0.00 0.00 0.00 4.61
3812 4407 4.052518 AGATGCAGGGTGGGTGGC 62.053 66.667 0.00 0.00 0.00 5.01
3838 4433 4.966787 GAACCACCGGCTGGCCAA 62.967 66.667 12.89 0.00 45.32 4.52
3839 4434 4.974721 AACCACCGGCTGGCCAAG 62.975 66.667 12.89 1.85 45.32 3.61
3847 4442 4.643387 GCTGGCCAAGGACCGTGT 62.643 66.667 7.01 0.00 0.00 4.49
3848 4443 2.669569 CTGGCCAAGGACCGTGTG 60.670 66.667 7.01 0.00 0.00 3.82
3849 4444 4.263572 TGGCCAAGGACCGTGTGG 62.264 66.667 0.61 7.06 42.84 4.17
3852 4447 3.953775 CCAAGGACCGTGTGGGCT 61.954 66.667 6.67 0.00 45.75 5.19
3853 4448 2.669569 CAAGGACCGTGTGGGCTG 60.670 66.667 0.00 0.00 45.75 4.85
3854 4449 3.953775 AAGGACCGTGTGGGCTGG 61.954 66.667 0.00 0.00 45.75 4.85
3859 4454 4.954970 CCGTGTGGGCTGGCACTT 62.955 66.667 2.88 0.00 33.78 3.16
3860 4455 3.357079 CGTGTGGGCTGGCACTTC 61.357 66.667 2.88 0.00 33.78 3.01
3861 4456 2.985847 GTGTGGGCTGGCACTTCC 60.986 66.667 2.88 0.00 33.22 3.46
3862 4457 4.284550 TGTGGGCTGGCACTTCCC 62.285 66.667 2.88 7.57 40.13 3.97
3884 4479 4.475135 GCGCCCTCCTTCCCTGAC 62.475 72.222 0.00 0.00 0.00 3.51
3885 4480 2.685380 CGCCCTCCTTCCCTGACT 60.685 66.667 0.00 0.00 0.00 3.41
3886 4481 2.294078 CGCCCTCCTTCCCTGACTT 61.294 63.158 0.00 0.00 0.00 3.01
3887 4482 1.301293 GCCCTCCTTCCCTGACTTG 59.699 63.158 0.00 0.00 0.00 3.16
3888 4483 1.994463 CCCTCCTTCCCTGACTTGG 59.006 63.158 0.00 0.00 0.00 3.61
3889 4484 1.301293 CCTCCTTCCCTGACTTGGC 59.699 63.158 0.00 0.00 0.00 4.52
3890 4485 1.301293 CTCCTTCCCTGACTTGGCC 59.699 63.158 0.00 0.00 0.00 5.36
3891 4486 2.045926 CCTTCCCTGACTTGGCCG 60.046 66.667 0.00 0.00 0.00 6.13
3892 4487 2.750350 CTTCCCTGACTTGGCCGT 59.250 61.111 0.00 0.00 0.00 5.68
3893 4488 1.376037 CTTCCCTGACTTGGCCGTC 60.376 63.158 0.00 0.11 34.52 4.79
3894 4489 3.234630 TTCCCTGACTTGGCCGTCG 62.235 63.158 0.00 0.00 36.71 5.12
3912 4507 3.732849 CCACTGCCCCCTTCCCTC 61.733 72.222 0.00 0.00 0.00 4.30
3913 4508 2.935481 CACTGCCCCCTTCCCTCA 60.935 66.667 0.00 0.00 0.00 3.86
3914 4509 2.128226 ACTGCCCCCTTCCCTCAT 59.872 61.111 0.00 0.00 0.00 2.90
3915 4510 2.311854 ACTGCCCCCTTCCCTCATG 61.312 63.158 0.00 0.00 0.00 3.07
3916 4511 2.204291 TGCCCCCTTCCCTCATGT 60.204 61.111 0.00 0.00 0.00 3.21
3917 4512 2.276309 CTGCCCCCTTCCCTCATGTC 62.276 65.000 0.00 0.00 0.00 3.06
3918 4513 2.911143 CCCCCTTCCCTCATGTCG 59.089 66.667 0.00 0.00 0.00 4.35
3919 4514 1.689233 CCCCCTTCCCTCATGTCGA 60.689 63.158 0.00 0.00 0.00 4.20
3920 4515 1.690219 CCCCCTTCCCTCATGTCGAG 61.690 65.000 0.00 0.00 41.89 4.04
3927 4522 2.202987 CTCATGTCGAGGCTGGGC 60.203 66.667 0.00 0.00 38.18 5.36
3928 4523 4.147449 TCATGTCGAGGCTGGGCG 62.147 66.667 0.00 0.00 0.00 6.13
3929 4524 4.457496 CATGTCGAGGCTGGGCGT 62.457 66.667 0.00 0.00 0.00 5.68
3930 4525 4.457496 ATGTCGAGGCTGGGCGTG 62.457 66.667 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.927049 TCTGAAATGATCTCCCAAAGCTT 58.073 39.130 0.00 0.00 0.00 3.74
14 15 4.525024 CTCTGAAATGATCTCCCAAAGCT 58.475 43.478 0.00 0.00 0.00 3.74
224 225 5.505780 TCCTTTTATCCGATGTCCACAATT 58.494 37.500 0.00 0.00 0.00 2.32
317 318 3.806316 ACACGCACTACTGCAAAATAC 57.194 42.857 0.00 0.00 44.50 1.89
612 614 1.414919 ACTAGTTGTCCTCCAAACGCA 59.585 47.619 0.00 0.00 34.07 5.24
682 684 1.544691 AGTTAGGCGTCACAAGTCGAT 59.455 47.619 0.00 0.00 0.00 3.59
741 746 9.924650 ATGACGTACCTTAATTAGCTTTATAGG 57.075 33.333 0.00 0.00 0.00 2.57
753 758 3.530265 TCGCCAATGACGTACCTTAAT 57.470 42.857 0.00 0.00 0.00 1.40
754 759 2.995258 GTTCGCCAATGACGTACCTTAA 59.005 45.455 0.00 0.00 0.00 1.85
755 760 2.609350 GTTCGCCAATGACGTACCTTA 58.391 47.619 0.00 0.00 0.00 2.69
756 761 1.435577 GTTCGCCAATGACGTACCTT 58.564 50.000 0.00 0.00 0.00 3.50
764 769 1.988293 TTTCAAGGGTTCGCCAATGA 58.012 45.000 0.00 0.00 39.65 2.57
795 800 7.257722 TCTCGCATGTATATACACCACATATG 58.742 38.462 17.69 11.11 39.30 1.78
796 801 7.404671 TCTCGCATGTATATACACCACATAT 57.595 36.000 17.69 0.00 39.30 1.78
797 802 6.625081 GCTCTCGCATGTATATACACCACATA 60.625 42.308 17.69 2.76 39.30 2.29
798 803 5.714047 CTCTCGCATGTATATACACCACAT 58.286 41.667 17.69 0.00 39.30 3.21
799 804 4.558697 GCTCTCGCATGTATATACACCACA 60.559 45.833 17.69 0.00 39.30 4.17
800 805 3.921021 GCTCTCGCATGTATATACACCAC 59.079 47.826 17.69 9.18 39.30 4.16
801 806 3.056821 GGCTCTCGCATGTATATACACCA 60.057 47.826 17.69 1.85 39.30 4.17
802 807 3.056821 TGGCTCTCGCATGTATATACACC 60.057 47.826 17.69 11.85 39.30 4.16
803 808 4.174411 TGGCTCTCGCATGTATATACAC 57.826 45.455 17.69 5.64 39.30 2.90
870 876 5.034554 TCAACTTCATTGCTTTCACGATC 57.965 39.130 0.00 0.00 38.29 3.69
871 877 4.756642 TCTCAACTTCATTGCTTTCACGAT 59.243 37.500 0.00 0.00 38.29 3.73
872 878 4.126437 TCTCAACTTCATTGCTTTCACGA 58.874 39.130 0.00 0.00 38.29 4.35
873 879 4.212004 TCTCTCAACTTCATTGCTTTCACG 59.788 41.667 0.00 0.00 38.29 4.35
979 995 0.249911 GCGATGGGGTGTGATCCTAC 60.250 60.000 0.00 0.00 0.00 3.18
1001 1025 1.298859 GCGCCGGTGACAAGAGAAAT 61.299 55.000 21.76 0.00 0.00 2.17
1008 1032 2.718731 CTTTTGCGCCGGTGACAA 59.281 55.556 21.76 18.97 0.00 3.18
1105 1133 4.549458 ACAACAAGATGGCTTTGATTTCG 58.451 39.130 4.44 0.00 30.14 3.46
1481 1533 1.738099 GCAGCACCTCGAACATCGT 60.738 57.895 0.00 0.00 41.35 3.73
1482 1534 2.792290 CGCAGCACCTCGAACATCG 61.792 63.158 0.00 0.00 42.10 3.84
1588 1640 3.991051 CACTCCCTCACGCACGGT 61.991 66.667 0.00 0.00 0.00 4.83
1602 1654 2.207924 GGTCGGTCCACTGTCCACT 61.208 63.158 0.00 0.00 35.97 4.00
1603 1655 2.156051 GAGGTCGGTCCACTGTCCAC 62.156 65.000 4.86 0.00 39.02 4.02
1604 1656 1.906824 GAGGTCGGTCCACTGTCCA 60.907 63.158 4.86 0.00 39.02 4.02
1605 1657 2.971452 GAGGTCGGTCCACTGTCC 59.029 66.667 0.00 0.00 39.02 4.02
1606 1658 2.567049 CGAGGTCGGTCCACTGTC 59.433 66.667 0.00 0.00 39.02 3.51
1618 1670 1.878656 CTGTTCCGAGAAGCCGAGGT 61.879 60.000 0.00 0.00 0.00 3.85
1689 1741 2.143419 GTCGGGCCTGGATGGAGAT 61.143 63.158 12.87 0.00 38.35 2.75
1988 2131 9.440773 GTATGGATCATGAATTCTTACTGCATA 57.559 33.333 7.05 9.00 0.00 3.14
2059 2265 2.217510 ACGTCTTCAGGCCTAAGAGA 57.782 50.000 19.09 13.87 33.75 3.10
2155 2361 5.394663 GCTGAGCCTGATAAAGTACTTCTGA 60.395 44.000 8.95 0.00 0.00 3.27
2186 2392 4.070552 GCTCGACCTCCTTGCCGT 62.071 66.667 0.00 0.00 0.00 5.68
2435 2653 6.548993 AGCTGATCATGTAGACATTGTAGAGA 59.451 38.462 0.00 0.00 33.61 3.10
2437 2655 6.462067 CCAGCTGATCATGTAGACATTGTAGA 60.462 42.308 17.39 0.00 33.61 2.59
2438 2656 5.695363 CCAGCTGATCATGTAGACATTGTAG 59.305 44.000 17.39 0.00 33.61 2.74
2439 2657 5.604565 CCAGCTGATCATGTAGACATTGTA 58.395 41.667 17.39 0.00 33.61 2.41
2440 2658 4.449131 CCAGCTGATCATGTAGACATTGT 58.551 43.478 17.39 0.00 33.61 2.71
2441 2659 3.250280 GCCAGCTGATCATGTAGACATTG 59.750 47.826 17.39 0.00 33.61 2.82
2442 2660 3.474600 GCCAGCTGATCATGTAGACATT 58.525 45.455 17.39 0.00 33.61 2.71
2443 2661 2.224475 GGCCAGCTGATCATGTAGACAT 60.224 50.000 17.39 0.00 36.96 3.06
2444 2662 1.139654 GGCCAGCTGATCATGTAGACA 59.860 52.381 17.39 0.00 0.00 3.41
2445 2663 1.871408 CGGCCAGCTGATCATGTAGAC 60.871 57.143 17.39 0.00 0.00 2.59
2593 2838 6.882140 GCATACCTACTCTCTCTGCTATCTTA 59.118 42.308 0.00 0.00 0.00 2.10
2596 2841 5.123820 CAGCATACCTACTCTCTCTGCTATC 59.876 48.000 0.00 0.00 36.41 2.08
2649 2954 5.056480 TCTCAGTATCAACACCAACACTTG 58.944 41.667 0.00 0.00 0.00 3.16
2679 2985 4.846168 AGTTCTAGACATCCTTTTCCCC 57.154 45.455 0.00 0.00 0.00 4.81
2724 3040 3.449018 ACTGAGCACTAGTATTCCCTGTG 59.551 47.826 0.00 0.00 0.00 3.66
2820 3159 1.745653 GCTGCATGAGTAAGGTTTCCC 59.254 52.381 0.00 0.00 0.00 3.97
2899 3261 1.135888 GCAAACATACGGACGGGAAAC 60.136 52.381 0.00 0.00 0.00 2.78
2900 3262 1.158434 GCAAACATACGGACGGGAAA 58.842 50.000 0.00 0.00 0.00 3.13
2901 3263 1.015085 CGCAAACATACGGACGGGAA 61.015 55.000 0.00 0.00 0.00 3.97
2902 3264 1.446445 CGCAAACATACGGACGGGA 60.446 57.895 0.00 0.00 0.00 5.14
2903 3265 1.418342 CTCGCAAACATACGGACGGG 61.418 60.000 0.00 0.00 0.00 5.28
2986 3366 7.451255 AGGTCAATCAGATGTTAACCAAATGAA 59.549 33.333 2.48 0.00 0.00 2.57
2991 3371 6.516527 GCAAAGGTCAATCAGATGTTAACCAA 60.517 38.462 2.48 0.00 0.00 3.67
3000 3380 5.733620 AACAATGCAAAGGTCAATCAGAT 57.266 34.783 0.00 0.00 0.00 2.90
3002 3382 5.050634 CACAAACAATGCAAAGGTCAATCAG 60.051 40.000 0.00 0.00 0.00 2.90
3078 3499 7.772292 TCAATGGTAGTAGTAGTAGTAGTGGTG 59.228 40.741 3.00 0.00 0.00 4.17
3092 3513 5.410746 GCATCATGGTCATCAATGGTAGTAG 59.589 44.000 0.00 0.00 0.00 2.57
3097 3518 2.956333 CAGCATCATGGTCATCAATGGT 59.044 45.455 0.00 0.00 0.00 3.55
3098 3519 2.296190 CCAGCATCATGGTCATCAATGG 59.704 50.000 0.00 0.00 35.47 3.16
3099 3520 3.004419 GTCCAGCATCATGGTCATCAATG 59.996 47.826 0.00 0.00 41.43 2.82
3100 3521 3.220110 GTCCAGCATCATGGTCATCAAT 58.780 45.455 0.00 0.00 41.43 2.57
3101 3522 2.646930 GTCCAGCATCATGGTCATCAA 58.353 47.619 0.00 0.00 41.43 2.57
3108 3627 1.454479 GGTGGGTCCAGCATCATGG 60.454 63.158 13.64 0.00 43.20 3.66
3109 3628 4.247781 GGTGGGTCCAGCATCATG 57.752 61.111 13.64 0.00 43.20 3.07
3121 3688 2.636893 TCCAATTCCATTGTTTGGTGGG 59.363 45.455 9.00 0.00 46.52 4.61
3154 3721 1.815003 AGATGCCAAAGCTAGTGCAAC 59.185 47.619 7.88 5.89 42.74 4.17
3218 3793 1.889170 GCCAAAAAGGAGTGAGGGAAG 59.111 52.381 0.00 0.00 41.22 3.46
3252 3827 4.460382 GTGGATGCCTTTTCTGAATGAGAA 59.540 41.667 0.00 0.00 39.05 2.87
3253 3828 4.012374 GTGGATGCCTTTTCTGAATGAGA 58.988 43.478 0.00 0.00 0.00 3.27
3260 3835 3.571401 GGGATATGTGGATGCCTTTTCTG 59.429 47.826 0.00 0.00 34.59 3.02
3379 3974 3.297134 AACTTGCAGAAAAGGTGAGGA 57.703 42.857 0.00 0.00 0.00 3.71
3400 3995 0.034616 GCTGAGCTGAGTGAGTGGTT 59.965 55.000 1.09 0.00 0.00 3.67
3401 3996 0.831288 AGCTGAGCTGAGTGAGTGGT 60.831 55.000 5.97 0.00 37.57 4.16
3402 3997 0.108709 GAGCTGAGCTGAGTGAGTGG 60.109 60.000 13.71 0.00 39.88 4.00
3403 3998 0.889994 AGAGCTGAGCTGAGTGAGTG 59.110 55.000 13.71 0.00 39.88 3.51
3404 3999 1.176527 GAGAGCTGAGCTGAGTGAGT 58.823 55.000 13.71 0.00 39.88 3.41
3405 4000 1.133598 CAGAGAGCTGAGCTGAGTGAG 59.866 57.143 13.71 0.00 45.17 3.51
3406 4001 1.175654 CAGAGAGCTGAGCTGAGTGA 58.824 55.000 13.71 0.00 45.17 3.41
3407 4002 1.175654 TCAGAGAGCTGAGCTGAGTG 58.824 55.000 13.71 5.90 45.88 3.51
3408 4003 3.668147 TCAGAGAGCTGAGCTGAGT 57.332 52.632 13.71 0.00 45.88 3.41
3416 4011 3.069729 TCACCATCATCATCAGAGAGCTG 59.930 47.826 0.00 0.00 43.67 4.24
3417 4012 3.306613 TCACCATCATCATCAGAGAGCT 58.693 45.455 0.00 0.00 0.00 4.09
3418 4013 3.747854 TCACCATCATCATCAGAGAGC 57.252 47.619 0.00 0.00 0.00 4.09
3419 4014 5.470047 TCATCACCATCATCATCAGAGAG 57.530 43.478 0.00 0.00 0.00 3.20
3420 4015 5.542635 TGATCATCACCATCATCATCAGAGA 59.457 40.000 0.00 0.00 0.00 3.10
3421 4016 5.794894 TGATCATCACCATCATCATCAGAG 58.205 41.667 0.00 0.00 0.00 3.35
3422 4017 5.818678 TGATCATCACCATCATCATCAGA 57.181 39.130 0.00 0.00 0.00 3.27
3423 4018 6.173339 TCATGATCATCACCATCATCATCAG 58.827 40.000 4.86 0.00 38.67 2.90
3424 4019 6.121776 TCATGATCATCACCATCATCATCA 57.878 37.500 4.86 0.00 38.67 3.07
3425 4020 6.823689 TGATCATGATCATCACCATCATCATC 59.176 38.462 30.27 4.36 42.42 2.92
3426 4021 6.721318 TGATCATGATCATCACCATCATCAT 58.279 36.000 30.27 0.00 42.42 2.45
3427 4022 6.121776 TGATCATGATCATCACCATCATCA 57.878 37.500 30.27 8.35 42.42 3.07
3443 4038 3.082548 GCTTCCCTCCATCATGATCATG 58.917 50.000 26.79 26.79 40.09 3.07
3444 4039 2.987437 AGCTTCCCTCCATCATGATCAT 59.013 45.455 4.86 1.18 0.00 2.45
3445 4040 2.415624 AGCTTCCCTCCATCATGATCA 58.584 47.619 4.86 0.00 0.00 2.92
3446 4041 3.072768 AGAAGCTTCCCTCCATCATGATC 59.927 47.826 22.81 0.00 0.00 2.92
3447 4042 3.054576 AGAAGCTTCCCTCCATCATGAT 58.945 45.455 22.81 1.18 0.00 2.45
3448 4043 2.172082 CAGAAGCTTCCCTCCATCATGA 59.828 50.000 22.81 0.00 0.00 3.07
3449 4044 2.573369 CAGAAGCTTCCCTCCATCATG 58.427 52.381 22.81 7.45 0.00 3.07
3450 4045 1.493871 CCAGAAGCTTCCCTCCATCAT 59.506 52.381 22.81 0.00 0.00 2.45
3451 4046 0.914644 CCAGAAGCTTCCCTCCATCA 59.085 55.000 22.81 0.00 0.00 3.07
3452 4047 0.182299 CCCAGAAGCTTCCCTCCATC 59.818 60.000 22.81 0.00 0.00 3.51
3453 4048 0.253347 TCCCAGAAGCTTCCCTCCAT 60.253 55.000 22.81 0.00 0.00 3.41
3454 4049 0.911525 CTCCCAGAAGCTTCCCTCCA 60.912 60.000 22.81 2.91 0.00 3.86
3455 4050 1.631071 CCTCCCAGAAGCTTCCCTCC 61.631 65.000 22.81 0.00 0.00 4.30
3456 4051 0.618968 TCCTCCCAGAAGCTTCCCTC 60.619 60.000 22.81 0.00 0.00 4.30
3457 4052 0.178861 TTCCTCCCAGAAGCTTCCCT 60.179 55.000 22.81 2.23 0.00 4.20
3458 4053 0.254462 CTTCCTCCCAGAAGCTTCCC 59.746 60.000 22.81 0.00 37.08 3.97
3459 4054 3.871701 CTTCCTCCCAGAAGCTTCC 57.128 57.895 22.81 5.35 37.08 3.46
3464 4059 0.972983 TCTCGGCTTCCTCCCAGAAG 60.973 60.000 0.00 0.00 45.05 2.85
3465 4060 0.972983 CTCTCGGCTTCCTCCCAGAA 60.973 60.000 0.00 0.00 0.00 3.02
3466 4061 1.380515 CTCTCGGCTTCCTCCCAGA 60.381 63.158 0.00 0.00 0.00 3.86
3467 4062 2.430610 CCTCTCGGCTTCCTCCCAG 61.431 68.421 0.00 0.00 0.00 4.45
3468 4063 2.364317 CCTCTCGGCTTCCTCCCA 60.364 66.667 0.00 0.00 0.00 4.37
3486 4081 0.682209 CCTTGTCCATGGCCTTGAGG 60.682 60.000 19.85 13.85 38.53 3.86
3487 4082 1.318158 GCCTTGTCCATGGCCTTGAG 61.318 60.000 19.85 8.87 43.54 3.02
3488 4083 1.304381 GCCTTGTCCATGGCCTTGA 60.304 57.895 19.85 2.68 43.54 3.02
3489 4084 3.291611 GCCTTGTCCATGGCCTTG 58.708 61.111 6.96 11.68 43.54 3.61
3494 4089 7.053316 TGATTTTAATATGCCTTGTCCATGG 57.947 36.000 4.97 4.97 0.00 3.66
3495 4090 9.199982 GAATGATTTTAATATGCCTTGTCCATG 57.800 33.333 0.00 0.00 0.00 3.66
3496 4091 8.926374 TGAATGATTTTAATATGCCTTGTCCAT 58.074 29.630 0.00 0.00 0.00 3.41
3497 4092 8.303780 TGAATGATTTTAATATGCCTTGTCCA 57.696 30.769 0.00 0.00 0.00 4.02
3498 4093 7.383300 GCTGAATGATTTTAATATGCCTTGTCC 59.617 37.037 0.00 0.00 0.00 4.02
3499 4094 8.139989 AGCTGAATGATTTTAATATGCCTTGTC 58.860 33.333 0.00 0.00 0.00 3.18
3500 4095 7.924412 CAGCTGAATGATTTTAATATGCCTTGT 59.076 33.333 8.42 0.00 0.00 3.16
3501 4096 7.924412 ACAGCTGAATGATTTTAATATGCCTTG 59.076 33.333 23.35 0.00 0.00 3.61
3502 4097 7.924412 CACAGCTGAATGATTTTAATATGCCTT 59.076 33.333 23.35 0.00 0.00 4.35
3503 4098 7.431249 CACAGCTGAATGATTTTAATATGCCT 58.569 34.615 23.35 0.00 0.00 4.75
3504 4099 6.145048 GCACAGCTGAATGATTTTAATATGCC 59.855 38.462 23.35 0.00 0.00 4.40
3505 4100 6.698329 TGCACAGCTGAATGATTTTAATATGC 59.302 34.615 23.35 14.54 0.00 3.14
3506 4101 8.812147 ATGCACAGCTGAATGATTTTAATATG 57.188 30.769 23.35 3.62 0.00 1.78
3507 4102 8.635328 TGATGCACAGCTGAATGATTTTAATAT 58.365 29.630 23.35 0.00 0.00 1.28
3508 4103 7.998580 TGATGCACAGCTGAATGATTTTAATA 58.001 30.769 23.35 0.00 0.00 0.98
3509 4104 6.869695 TGATGCACAGCTGAATGATTTTAAT 58.130 32.000 23.35 0.00 0.00 1.40
3510 4105 6.270156 TGATGCACAGCTGAATGATTTTAA 57.730 33.333 23.35 0.00 0.00 1.52
3511 4106 5.900865 TGATGCACAGCTGAATGATTTTA 57.099 34.783 23.35 0.00 0.00 1.52
3512 4107 4.794278 TGATGCACAGCTGAATGATTTT 57.206 36.364 23.35 0.00 0.00 1.82
3513 4108 4.744570 CTTGATGCACAGCTGAATGATTT 58.255 39.130 23.35 0.00 0.00 2.17
3514 4109 3.428999 GCTTGATGCACAGCTGAATGATT 60.429 43.478 23.35 0.00 42.31 2.57
3515 4110 2.099263 GCTTGATGCACAGCTGAATGAT 59.901 45.455 23.35 6.35 42.31 2.45
3516 4111 1.471287 GCTTGATGCACAGCTGAATGA 59.529 47.619 23.35 2.14 42.31 2.57
3517 4112 1.794076 CGCTTGATGCACAGCTGAATG 60.794 52.381 23.35 10.64 43.06 2.67
3518 4113 0.450583 CGCTTGATGCACAGCTGAAT 59.549 50.000 23.35 10.86 43.06 2.57
3519 4114 1.871077 CGCTTGATGCACAGCTGAA 59.129 52.632 23.35 5.79 43.06 3.02
3520 4115 2.683859 GCGCTTGATGCACAGCTGA 61.684 57.895 23.35 0.00 43.06 4.26
3521 4116 2.202440 GCGCTTGATGCACAGCTG 60.202 61.111 13.48 13.48 43.06 4.24
3522 4117 3.796443 CGCGCTTGATGCACAGCT 61.796 61.111 5.56 0.00 43.06 4.24
3523 4118 3.713615 CTCGCGCTTGATGCACAGC 62.714 63.158 5.56 4.58 43.06 4.40
3524 4119 2.398429 CTCGCGCTTGATGCACAG 59.602 61.111 5.56 0.00 43.06 3.66
3525 4120 3.792047 GCTCGCGCTTGATGCACA 61.792 61.111 5.56 0.00 43.06 4.57
3526 4121 3.792047 TGCTCGCGCTTGATGCAC 61.792 61.111 5.56 0.00 43.06 4.57
3527 4122 3.792047 GTGCTCGCGCTTGATGCA 61.792 61.111 5.56 5.69 43.06 3.96
3528 4123 3.431683 GAGTGCTCGCGCTTGATGC 62.432 63.158 5.56 2.85 36.86 3.91
3529 4124 2.699809 GAGTGCTCGCGCTTGATG 59.300 61.111 5.56 0.00 36.86 3.07
3530 4125 2.510238 GGAGTGCTCGCGCTTGAT 60.510 61.111 5.56 0.00 36.86 2.57
3531 4126 3.633094 GAGGAGTGCTCGCGCTTGA 62.633 63.158 5.56 0.00 36.86 3.02
3532 4127 3.184683 GAGGAGTGCTCGCGCTTG 61.185 66.667 5.56 0.00 36.86 4.01
3533 4128 4.443266 GGAGGAGTGCTCGCGCTT 62.443 66.667 5.56 0.00 36.86 4.68
3537 4132 3.532155 ATCGGGAGGAGTGCTCGC 61.532 66.667 17.38 17.38 0.00 5.03
3538 4133 2.343163 GACATCGGGAGGAGTGCTCG 62.343 65.000 5.49 0.00 0.00 5.03
3539 4134 1.439644 GACATCGGGAGGAGTGCTC 59.560 63.158 2.44 2.44 0.00 4.26
3540 4135 2.060980 GGACATCGGGAGGAGTGCT 61.061 63.158 0.00 0.00 0.00 4.40
3541 4136 2.359169 TGGACATCGGGAGGAGTGC 61.359 63.158 0.00 0.00 0.00 4.40
3542 4137 1.517832 GTGGACATCGGGAGGAGTG 59.482 63.158 0.00 0.00 0.00 3.51
3543 4138 2.052690 CGTGGACATCGGGAGGAGT 61.053 63.158 0.00 0.00 0.00 3.85
3544 4139 2.005960 GACGTGGACATCGGGAGGAG 62.006 65.000 0.00 0.00 0.00 3.69
3545 4140 2.036731 ACGTGGACATCGGGAGGA 59.963 61.111 0.00 0.00 0.00 3.71
3546 4141 2.494918 GACGTGGACATCGGGAGG 59.505 66.667 0.00 0.00 0.00 4.30
3547 4142 2.102357 CGACGTGGACATCGGGAG 59.898 66.667 0.00 0.00 34.67 4.30
3557 4152 1.592400 TTCCAGCTAGTCCGACGTGG 61.592 60.000 0.00 0.00 40.09 4.94
3558 4153 0.179161 CTTCCAGCTAGTCCGACGTG 60.179 60.000 0.00 0.00 0.00 4.49
3559 4154 0.322277 TCTTCCAGCTAGTCCGACGT 60.322 55.000 0.00 0.00 0.00 4.34
3560 4155 0.099082 GTCTTCCAGCTAGTCCGACG 59.901 60.000 0.00 0.00 0.00 5.12
3561 4156 1.174783 TGTCTTCCAGCTAGTCCGAC 58.825 55.000 0.00 0.00 0.00 4.79
3562 4157 1.919240 TTGTCTTCCAGCTAGTCCGA 58.081 50.000 0.00 0.00 0.00 4.55
3563 4158 2.743636 TTTGTCTTCCAGCTAGTCCG 57.256 50.000 0.00 0.00 0.00 4.79
3564 4159 4.642429 TCTTTTTGTCTTCCAGCTAGTCC 58.358 43.478 0.00 0.00 0.00 3.85
3565 4160 4.153296 GCTCTTTTTGTCTTCCAGCTAGTC 59.847 45.833 0.00 0.00 0.00 2.59
3566 4161 4.068599 GCTCTTTTTGTCTTCCAGCTAGT 58.931 43.478 0.00 0.00 0.00 2.57
3567 4162 4.067896 TGCTCTTTTTGTCTTCCAGCTAG 58.932 43.478 0.00 0.00 0.00 3.42
3568 4163 4.085357 TGCTCTTTTTGTCTTCCAGCTA 57.915 40.909 0.00 0.00 0.00 3.32
3569 4164 2.936202 TGCTCTTTTTGTCTTCCAGCT 58.064 42.857 0.00 0.00 0.00 4.24
3570 4165 3.316308 TCTTGCTCTTTTTGTCTTCCAGC 59.684 43.478 0.00 0.00 0.00 4.85
3571 4166 4.023365 CCTCTTGCTCTTTTTGTCTTCCAG 60.023 45.833 0.00 0.00 0.00 3.86
3572 4167 3.885297 CCTCTTGCTCTTTTTGTCTTCCA 59.115 43.478 0.00 0.00 0.00 3.53
3573 4168 3.254411 CCCTCTTGCTCTTTTTGTCTTCC 59.746 47.826 0.00 0.00 0.00 3.46
3574 4169 4.137543 TCCCTCTTGCTCTTTTTGTCTTC 58.862 43.478 0.00 0.00 0.00 2.87
3575 4170 4.140536 CTCCCTCTTGCTCTTTTTGTCTT 58.859 43.478 0.00 0.00 0.00 3.01
3576 4171 3.497584 CCTCCCTCTTGCTCTTTTTGTCT 60.498 47.826 0.00 0.00 0.00 3.41
3577 4172 2.816672 CCTCCCTCTTGCTCTTTTTGTC 59.183 50.000 0.00 0.00 0.00 3.18
3578 4173 2.443255 TCCTCCCTCTTGCTCTTTTTGT 59.557 45.455 0.00 0.00 0.00 2.83
3579 4174 3.146104 TCCTCCCTCTTGCTCTTTTTG 57.854 47.619 0.00 0.00 0.00 2.44
3580 4175 3.139211 ACTTCCTCCCTCTTGCTCTTTTT 59.861 43.478 0.00 0.00 0.00 1.94
3581 4176 2.713708 ACTTCCTCCCTCTTGCTCTTTT 59.286 45.455 0.00 0.00 0.00 2.27
3582 4177 2.343625 ACTTCCTCCCTCTTGCTCTTT 58.656 47.619 0.00 0.00 0.00 2.52
3583 4178 2.037385 ACTTCCTCCCTCTTGCTCTT 57.963 50.000 0.00 0.00 0.00 2.85
3584 4179 1.627834 CAACTTCCTCCCTCTTGCTCT 59.372 52.381 0.00 0.00 0.00 4.09
3585 4180 1.948144 GCAACTTCCTCCCTCTTGCTC 60.948 57.143 0.00 0.00 35.41 4.26
3586 4181 0.037447 GCAACTTCCTCCCTCTTGCT 59.963 55.000 0.00 0.00 35.41 3.91
3587 4182 0.962855 GGCAACTTCCTCCCTCTTGC 60.963 60.000 0.00 0.00 37.16 4.01
3588 4183 3.256281 GGCAACTTCCTCCCTCTTG 57.744 57.895 0.00 0.00 0.00 3.02
3606 4201 3.787001 GAAGGGGTGGGGCTCGAG 61.787 72.222 8.45 8.45 0.00 4.04
3609 4204 0.994050 ATAAGGAAGGGGTGGGGCTC 60.994 60.000 0.00 0.00 0.00 4.70
3610 4205 0.994050 GATAAGGAAGGGGTGGGGCT 60.994 60.000 0.00 0.00 0.00 5.19
3611 4206 1.537172 GATAAGGAAGGGGTGGGGC 59.463 63.158 0.00 0.00 0.00 5.80
3612 4207 0.328548 AGGATAAGGAAGGGGTGGGG 60.329 60.000 0.00 0.00 0.00 4.96
3613 4208 1.608425 AAGGATAAGGAAGGGGTGGG 58.392 55.000 0.00 0.00 0.00 4.61
3614 4209 2.091830 GGAAAGGATAAGGAAGGGGTGG 60.092 54.545 0.00 0.00 0.00 4.61
3615 4210 2.853077 AGGAAAGGATAAGGAAGGGGTG 59.147 50.000 0.00 0.00 0.00 4.61
3616 4211 3.124066 GAGGAAAGGATAAGGAAGGGGT 58.876 50.000 0.00 0.00 0.00 4.95
3617 4212 2.443632 GGAGGAAAGGATAAGGAAGGGG 59.556 54.545 0.00 0.00 0.00 4.79
3618 4213 3.123273 TGGAGGAAAGGATAAGGAAGGG 58.877 50.000 0.00 0.00 0.00 3.95
3619 4214 4.862641 TTGGAGGAAAGGATAAGGAAGG 57.137 45.455 0.00 0.00 0.00 3.46
3620 4215 7.724490 AATTTTGGAGGAAAGGATAAGGAAG 57.276 36.000 0.00 0.00 0.00 3.46
3621 4216 7.732593 TGAAATTTTGGAGGAAAGGATAAGGAA 59.267 33.333 0.00 0.00 0.00 3.36
3622 4217 7.178451 GTGAAATTTTGGAGGAAAGGATAAGGA 59.822 37.037 0.00 0.00 0.00 3.36
3623 4218 7.039082 TGTGAAATTTTGGAGGAAAGGATAAGG 60.039 37.037 0.00 0.00 0.00 2.69
3624 4219 7.895759 TGTGAAATTTTGGAGGAAAGGATAAG 58.104 34.615 0.00 0.00 0.00 1.73
3625 4220 7.847711 TGTGAAATTTTGGAGGAAAGGATAA 57.152 32.000 0.00 0.00 0.00 1.75
3626 4221 7.148086 CGATGTGAAATTTTGGAGGAAAGGATA 60.148 37.037 0.00 0.00 0.00 2.59
3627 4222 6.350445 CGATGTGAAATTTTGGAGGAAAGGAT 60.350 38.462 0.00 0.00 0.00 3.24
3628 4223 5.048083 CGATGTGAAATTTTGGAGGAAAGGA 60.048 40.000 0.00 0.00 0.00 3.36
3629 4224 5.163513 CGATGTGAAATTTTGGAGGAAAGG 58.836 41.667 0.00 0.00 0.00 3.11
3630 4225 4.622740 GCGATGTGAAATTTTGGAGGAAAG 59.377 41.667 0.00 0.00 0.00 2.62
3631 4226 4.038522 TGCGATGTGAAATTTTGGAGGAAA 59.961 37.500 0.00 0.00 0.00 3.13
3632 4227 3.571828 TGCGATGTGAAATTTTGGAGGAA 59.428 39.130 0.00 0.00 0.00 3.36
3633 4228 3.057596 GTGCGATGTGAAATTTTGGAGGA 60.058 43.478 0.00 0.00 0.00 3.71
3634 4229 3.244976 GTGCGATGTGAAATTTTGGAGG 58.755 45.455 0.00 0.00 0.00 4.30
3635 4230 2.910482 CGTGCGATGTGAAATTTTGGAG 59.090 45.455 0.00 0.00 0.00 3.86
3636 4231 2.920227 GCGTGCGATGTGAAATTTTGGA 60.920 45.455 0.00 0.00 0.00 3.53
3637 4232 1.386412 GCGTGCGATGTGAAATTTTGG 59.614 47.619 0.00 0.00 0.00 3.28
3638 4233 2.049959 TGCGTGCGATGTGAAATTTTG 58.950 42.857 0.00 0.00 0.00 2.44
3639 4234 2.414058 TGCGTGCGATGTGAAATTTT 57.586 40.000 0.00 0.00 0.00 1.82
3640 4235 2.050691 GTTGCGTGCGATGTGAAATTT 58.949 42.857 0.00 0.00 0.00 1.82
3641 4236 1.665735 GGTTGCGTGCGATGTGAAATT 60.666 47.619 0.00 0.00 0.00 1.82
3642 4237 0.109781 GGTTGCGTGCGATGTGAAAT 60.110 50.000 0.00 0.00 0.00 2.17
3643 4238 1.163420 AGGTTGCGTGCGATGTGAAA 61.163 50.000 0.00 0.00 0.00 2.69
3644 4239 1.163420 AAGGTTGCGTGCGATGTGAA 61.163 50.000 0.00 0.00 0.00 3.18
3645 4240 1.565156 GAAGGTTGCGTGCGATGTGA 61.565 55.000 0.00 0.00 0.00 3.58
3646 4241 1.154413 GAAGGTTGCGTGCGATGTG 60.154 57.895 0.00 0.00 0.00 3.21
3647 4242 1.291877 GAGAAGGTTGCGTGCGATGT 61.292 55.000 0.00 0.00 0.00 3.06
3648 4243 1.016130 AGAGAAGGTTGCGTGCGATG 61.016 55.000 0.00 0.00 0.00 3.84
3649 4244 0.737715 GAGAGAAGGTTGCGTGCGAT 60.738 55.000 0.00 0.00 0.00 4.58
3650 4245 1.372997 GAGAGAAGGTTGCGTGCGA 60.373 57.895 0.00 0.00 0.00 5.10
3651 4246 2.720758 CGAGAGAAGGTTGCGTGCG 61.721 63.158 0.00 0.00 0.00 5.34
3652 4247 1.664965 ACGAGAGAAGGTTGCGTGC 60.665 57.895 0.00 0.00 33.52 5.34
3653 4248 2.145225 CACGAGAGAAGGTTGCGTG 58.855 57.895 0.00 0.00 44.78 5.34
3654 4249 0.318784 GTCACGAGAGAAGGTTGCGT 60.319 55.000 0.00 0.00 35.33 5.24
3655 4250 1.337817 CGTCACGAGAGAAGGTTGCG 61.338 60.000 0.00 0.00 0.00 4.85
3656 4251 1.618640 GCGTCACGAGAGAAGGTTGC 61.619 60.000 0.00 0.00 0.00 4.17
3657 4252 1.009389 GGCGTCACGAGAGAAGGTTG 61.009 60.000 0.00 0.00 0.00 3.77
3658 4253 1.289380 GGCGTCACGAGAGAAGGTT 59.711 57.895 0.00 0.00 0.00 3.50
3659 4254 2.963371 GGCGTCACGAGAGAAGGT 59.037 61.111 0.00 0.00 0.00 3.50
3660 4255 2.202492 CGGCGTCACGAGAGAAGG 60.202 66.667 0.00 0.00 35.47 3.46
3661 4256 2.876645 GCGGCGTCACGAGAGAAG 60.877 66.667 9.37 0.00 35.47 2.85
3662 4257 4.415332 GGCGGCGTCACGAGAGAA 62.415 66.667 6.63 0.00 35.47 2.87
3678 4273 4.214327 GAGAAGAGGAGGCGGCGG 62.214 72.222 9.78 0.00 0.00 6.13
3679 4274 3.132481 GAGAGAAGAGGAGGCGGCG 62.132 68.421 0.51 0.51 0.00 6.46
3680 4275 2.791868 GGAGAGAAGAGGAGGCGGC 61.792 68.421 0.00 0.00 0.00 6.53
3681 4276 2.131067 GGGAGAGAAGAGGAGGCGG 61.131 68.421 0.00 0.00 0.00 6.13
3682 4277 2.131067 GGGGAGAGAAGAGGAGGCG 61.131 68.421 0.00 0.00 0.00 5.52
3683 4278 1.764454 GGGGGAGAGAAGAGGAGGC 60.764 68.421 0.00 0.00 0.00 4.70
3684 4279 1.456705 CGGGGGAGAGAAGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
3685 4280 0.187361 ATCGGGGGAGAGAAGAGGAG 59.813 60.000 0.00 0.00 0.00 3.69
3686 4281 0.637195 AATCGGGGGAGAGAAGAGGA 59.363 55.000 0.00 0.00 0.00 3.71
3687 4282 1.044611 GAATCGGGGGAGAGAAGAGG 58.955 60.000 0.00 0.00 0.00 3.69
3688 4283 1.960689 GAGAATCGGGGGAGAGAAGAG 59.039 57.143 0.00 0.00 0.00 2.85
3689 4284 1.411787 GGAGAATCGGGGGAGAGAAGA 60.412 57.143 0.00 0.00 34.37 2.87
3690 4285 1.044611 GGAGAATCGGGGGAGAGAAG 58.955 60.000 0.00 0.00 34.37 2.85
3691 4286 0.637195 AGGAGAATCGGGGGAGAGAA 59.363 55.000 0.00 0.00 34.37 2.87
3692 4287 0.186386 GAGGAGAATCGGGGGAGAGA 59.814 60.000 0.00 0.00 34.37 3.10
3693 4288 1.175983 CGAGGAGAATCGGGGGAGAG 61.176 65.000 0.00 0.00 39.04 3.20
3694 4289 1.152735 CGAGGAGAATCGGGGGAGA 60.153 63.158 0.00 0.00 39.04 3.71
3695 4290 2.862223 GCGAGGAGAATCGGGGGAG 61.862 68.421 0.00 0.00 42.94 4.30
3696 4291 2.838225 GCGAGGAGAATCGGGGGA 60.838 66.667 0.00 0.00 42.94 4.81
3700 4295 1.298713 CAGTCGCGAGGAGAATCGG 60.299 63.158 10.24 0.00 42.94 4.18
3701 4296 1.941734 GCAGTCGCGAGGAGAATCG 60.942 63.158 10.24 0.00 45.48 3.34
3702 4297 0.593773 GAGCAGTCGCGAGGAGAATC 60.594 60.000 10.24 0.00 45.49 2.52
3703 4298 1.435515 GAGCAGTCGCGAGGAGAAT 59.564 57.895 10.24 0.00 45.49 2.40
3704 4299 2.701780 GGAGCAGTCGCGAGGAGAA 61.702 63.158 10.24 0.00 45.49 2.87
3705 4300 3.134792 GGAGCAGTCGCGAGGAGA 61.135 66.667 10.24 0.00 45.49 3.71
3706 4301 4.544689 CGGAGCAGTCGCGAGGAG 62.545 72.222 10.24 3.06 45.49 3.69
3708 4303 4.544689 CTCGGAGCAGTCGCGAGG 62.545 72.222 10.24 6.13 45.49 4.63
3714 4309 3.844090 GAGGGGCTCGGAGCAGTC 61.844 72.222 29.33 18.39 44.75 3.51
3718 4313 4.851214 AGAGGAGGGGCTCGGAGC 62.851 72.222 21.57 21.57 41.46 4.70
3719 4314 2.042435 AAGAGGAGGGGCTCGGAG 60.042 66.667 0.00 0.00 0.00 4.63
3720 4315 2.042843 GAAGAGGAGGGGCTCGGA 60.043 66.667 0.00 0.00 0.00 4.55
3721 4316 3.157949 GGAAGAGGAGGGGCTCGG 61.158 72.222 0.00 0.00 0.00 4.63
3722 4317 3.157949 GGGAAGAGGAGGGGCTCG 61.158 72.222 0.00 0.00 0.00 5.03
3723 4318 2.069430 CAGGGAAGAGGAGGGGCTC 61.069 68.421 0.00 0.00 0.00 4.70
3724 4319 2.041928 CAGGGAAGAGGAGGGGCT 59.958 66.667 0.00 0.00 0.00 5.19
3725 4320 2.285743 ACAGGGAAGAGGAGGGGC 60.286 66.667 0.00 0.00 0.00 5.80
3726 4321 1.229658 ACACAGGGAAGAGGAGGGG 60.230 63.158 0.00 0.00 0.00 4.79
3727 4322 1.608717 CGACACAGGGAAGAGGAGGG 61.609 65.000 0.00 0.00 0.00 4.30
3728 4323 1.608717 CCGACACAGGGAAGAGGAGG 61.609 65.000 0.00 0.00 0.00 4.30
3729 4324 1.893786 CCGACACAGGGAAGAGGAG 59.106 63.158 0.00 0.00 0.00 3.69
3730 4325 2.283529 GCCGACACAGGGAAGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
3731 4326 2.266055 GCCGACACAGGGAAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
3732 4327 1.079543 CAGCCGACACAGGGAAGAG 60.080 63.158 0.00 0.00 0.00 2.85
3733 4328 3.059982 CAGCCGACACAGGGAAGA 58.940 61.111 0.00 0.00 0.00 2.87
3734 4329 2.743928 GCAGCCGACACAGGGAAG 60.744 66.667 0.00 0.00 0.00 3.46
3735 4330 3.240134 GAGCAGCCGACACAGGGAA 62.240 63.158 0.00 0.00 0.00 3.97
3736 4331 3.695606 GAGCAGCCGACACAGGGA 61.696 66.667 0.00 0.00 0.00 4.20
3738 4333 4.056125 TCGAGCAGCCGACACAGG 62.056 66.667 2.24 0.00 33.14 4.00
3769 4364 3.589654 TTCACCTTCTCCCGCAGCG 62.590 63.158 8.18 8.18 0.00 5.18
3770 4365 2.035442 GTTCACCTTCTCCCGCAGC 61.035 63.158 0.00 0.00 0.00 5.25
3771 4366 0.951040 GTGTTCACCTTCTCCCGCAG 60.951 60.000 0.00 0.00 0.00 5.18
3772 4367 1.070786 GTGTTCACCTTCTCCCGCA 59.929 57.895 0.00 0.00 0.00 5.69
3773 4368 2.027625 CGTGTTCACCTTCTCCCGC 61.028 63.158 0.00 0.00 0.00 6.13
3774 4369 0.388649 CTCGTGTTCACCTTCTCCCG 60.389 60.000 0.00 0.00 0.00 5.14
3775 4370 0.037232 CCTCGTGTTCACCTTCTCCC 60.037 60.000 0.00 0.00 0.00 4.30
3776 4371 0.966920 TCCTCGTGTTCACCTTCTCC 59.033 55.000 0.00 0.00 0.00 3.71
3777 4372 1.887198 TCTCCTCGTGTTCACCTTCTC 59.113 52.381 0.00 0.00 0.00 2.87
3778 4373 1.996798 TCTCCTCGTGTTCACCTTCT 58.003 50.000 0.00 0.00 0.00 2.85
3779 4374 2.611518 CATCTCCTCGTGTTCACCTTC 58.388 52.381 0.00 0.00 0.00 3.46
3780 4375 1.338200 GCATCTCCTCGTGTTCACCTT 60.338 52.381 0.00 0.00 0.00 3.50
3781 4376 0.247736 GCATCTCCTCGTGTTCACCT 59.752 55.000 0.00 0.00 0.00 4.00
3782 4377 0.037326 TGCATCTCCTCGTGTTCACC 60.037 55.000 0.00 0.00 0.00 4.02
3783 4378 1.354040 CTGCATCTCCTCGTGTTCAC 58.646 55.000 0.00 0.00 0.00 3.18
3784 4379 0.247460 CCTGCATCTCCTCGTGTTCA 59.753 55.000 0.00 0.00 0.00 3.18
3785 4380 0.460987 CCCTGCATCTCCTCGTGTTC 60.461 60.000 0.00 0.00 0.00 3.18
3786 4381 1.194781 ACCCTGCATCTCCTCGTGTT 61.195 55.000 0.00 0.00 0.00 3.32
3787 4382 1.610673 ACCCTGCATCTCCTCGTGT 60.611 57.895 0.00 0.00 0.00 4.49
3788 4383 1.153489 CACCCTGCATCTCCTCGTG 60.153 63.158 0.00 0.00 0.00 4.35
3789 4384 2.362369 CCACCCTGCATCTCCTCGT 61.362 63.158 0.00 0.00 0.00 4.18
3790 4385 2.503061 CCACCCTGCATCTCCTCG 59.497 66.667 0.00 0.00 0.00 4.63
3791 4386 1.997874 ACCCACCCTGCATCTCCTC 60.998 63.158 0.00 0.00 0.00 3.71
3792 4387 2.125912 ACCCACCCTGCATCTCCT 59.874 61.111 0.00 0.00 0.00 3.69
3793 4388 2.273449 CACCCACCCTGCATCTCC 59.727 66.667 0.00 0.00 0.00 3.71
3794 4389 2.273449 CCACCCACCCTGCATCTC 59.727 66.667 0.00 0.00 0.00 2.75
3795 4390 4.052518 GCCACCCACCCTGCATCT 62.053 66.667 0.00 0.00 0.00 2.90
3830 4425 4.643387 ACACGGTCCTTGGCCAGC 62.643 66.667 5.11 0.00 0.00 4.85
3831 4426 2.669569 CACACGGTCCTTGGCCAG 60.670 66.667 5.11 0.00 0.00 4.85
3832 4427 4.263572 CCACACGGTCCTTGGCCA 62.264 66.667 0.00 0.00 0.00 5.36
3835 4430 3.953775 AGCCCACACGGTCCTTGG 61.954 66.667 0.00 0.00 0.00 3.61
3836 4431 2.669569 CAGCCCACACGGTCCTTG 60.670 66.667 0.00 0.00 0.00 3.61
3837 4432 3.953775 CCAGCCCACACGGTCCTT 61.954 66.667 0.00 0.00 0.00 3.36
3842 4437 4.954970 AAGTGCCAGCCCACACGG 62.955 66.667 3.10 0.00 41.72 4.94
3843 4438 3.357079 GAAGTGCCAGCCCACACG 61.357 66.667 3.10 0.00 41.72 4.49
3844 4439 2.985847 GGAAGTGCCAGCCCACAC 60.986 66.667 3.10 0.00 38.18 3.82
3845 4440 4.284550 GGGAAGTGCCAGCCCACA 62.285 66.667 0.00 0.00 41.64 4.17
3867 4462 4.475135 GTCAGGGAAGGAGGGCGC 62.475 72.222 0.00 0.00 0.00 6.53
3868 4463 2.294078 AAGTCAGGGAAGGAGGGCG 61.294 63.158 0.00 0.00 0.00 6.13
3869 4464 1.301293 CAAGTCAGGGAAGGAGGGC 59.699 63.158 0.00 0.00 0.00 5.19
3870 4465 1.994463 CCAAGTCAGGGAAGGAGGG 59.006 63.158 0.00 0.00 0.00 4.30
3871 4466 1.301293 GCCAAGTCAGGGAAGGAGG 59.699 63.158 0.00 0.00 0.00 4.30
3872 4467 1.301293 GGCCAAGTCAGGGAAGGAG 59.699 63.158 0.00 0.00 0.00 3.69
3873 4468 2.592993 CGGCCAAGTCAGGGAAGGA 61.593 63.158 2.24 0.00 0.00 3.36
3874 4469 2.045926 CGGCCAAGTCAGGGAAGG 60.046 66.667 2.24 0.00 0.00 3.46
3875 4470 1.376037 GACGGCCAAGTCAGGGAAG 60.376 63.158 2.24 0.00 40.65 3.46
3876 4471 2.747686 GACGGCCAAGTCAGGGAA 59.252 61.111 2.24 0.00 40.65 3.97
3877 4472 3.691342 CGACGGCCAAGTCAGGGA 61.691 66.667 2.24 0.00 40.98 4.20
3895 4490 3.732849 GAGGGAAGGGGGCAGTGG 61.733 72.222 0.00 0.00 0.00 4.00
3896 4491 2.311854 ATGAGGGAAGGGGGCAGTG 61.312 63.158 0.00 0.00 0.00 3.66
3897 4492 2.128226 ATGAGGGAAGGGGGCAGT 59.872 61.111 0.00 0.00 0.00 4.40
3898 4493 2.276309 GACATGAGGGAAGGGGGCAG 62.276 65.000 0.00 0.00 0.00 4.85
3899 4494 2.204291 ACATGAGGGAAGGGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
3900 4495 2.597903 GACATGAGGGAAGGGGGC 59.402 66.667 0.00 0.00 0.00 5.80
3901 4496 1.689233 TCGACATGAGGGAAGGGGG 60.689 63.158 0.00 0.00 0.00 5.40
3902 4497 1.826024 CTCGACATGAGGGAAGGGG 59.174 63.158 0.00 0.00 41.29 4.79
3910 4505 2.202987 GCCCAGCCTCGACATGAG 60.203 66.667 0.00 0.00 44.83 2.90
3911 4506 4.147449 CGCCCAGCCTCGACATGA 62.147 66.667 0.00 0.00 0.00 3.07
3912 4507 4.457496 ACGCCCAGCCTCGACATG 62.457 66.667 0.00 0.00 0.00 3.21
3913 4508 4.457496 CACGCCCAGCCTCGACAT 62.457 66.667 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.