Multiple sequence alignment - TraesCS3A01G511600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G511600 chr3A 100.000 3930 0 0 1 3930 731008564 731004635 0.000000e+00 7258
1 TraesCS3A01G511600 chr3A 93.293 164 5 2 2553 2713 731005958 731005798 1.830000e-58 237
2 TraesCS3A01G511600 chr3A 93.293 164 5 2 2607 2767 731006012 731005852 1.830000e-58 237
3 TraesCS3A01G511600 chr3A 93.636 110 4 1 2553 2662 731005904 731005798 1.130000e-35 161
4 TraesCS3A01G511600 chr3A 93.636 110 4 1 2661 2767 731006012 731005903 1.130000e-35 161
5 TraesCS3A01G511600 chr3B 92.579 2210 137 14 1292 3482 808974248 808976449 0.000000e+00 3147
6 TraesCS3A01G511600 chr3B 88.974 1306 81 22 1 1274 808972801 808974075 0.000000e+00 1555
7 TraesCS3A01G511600 chr3B 93.902 164 7 1 2553 2713 808975561 808975724 1.090000e-60 244
8 TraesCS3A01G511600 chr3B 93.333 165 8 1 2606 2767 808975506 808975670 1.410000e-59 241
9 TraesCS3A01G511600 chr3B 98.214 56 1 0 2553 2608 808975669 808975724 8.990000e-17 99
10 TraesCS3A01G511600 chr3D 93.675 1929 88 16 1297 3198 602045249 602047170 0.000000e+00 2856
11 TraesCS3A01G511600 chr3D 85.430 1057 70 38 278 1271 602044028 602045063 0.000000e+00 1022
12 TraesCS3A01G511600 chr3D 84.444 675 74 21 2828 3482 602057749 602058412 1.540000e-178 636
13 TraesCS3A01G511600 chr3D 85.669 314 34 8 3064 3369 602067311 602067621 1.760000e-83 320
14 TraesCS3A01G511600 chr3D 87.755 245 11 6 2828 3060 265509356 265509593 6.470000e-68 268
15 TraesCS3A01G511600 chr3D 95.122 164 5 1 2553 2713 602046576 602046739 5.040000e-64 255
16 TraesCS3A01G511600 chr3D 93.333 165 8 1 2606 2767 602046521 602046685 1.410000e-59 241
17 TraesCS3A01G511600 chr3D 96.364 110 4 0 2553 2662 602046630 602046739 8.670000e-42 182
18 TraesCS3A01G511600 chr3D 98.214 56 1 0 2553 2608 602046684 602046739 8.990000e-17 99
19 TraesCS3A01G511600 chr2D 88.017 242 14 4 2828 3059 19877926 19877690 5.000000e-69 272
20 TraesCS3A01G511600 chr2D 93.662 142 9 0 2828 2969 569554121 569554262 3.080000e-51 213
21 TraesCS3A01G511600 chr7D 86.992 246 17 4 2828 3063 137775029 137774789 3.010000e-66 263
22 TraesCS3A01G511600 chr5D 87.243 243 16 4 2828 3060 321295051 321294814 3.010000e-66 263
23 TraesCS3A01G511600 chr5A 86.290 248 17 7 2828 3063 465155900 465155658 1.810000e-63 254
24 TraesCS3A01G511600 chr4A 86.000 250 17 8 2831 3069 526606821 526606579 6.520000e-63 252
25 TraesCS3A01G511600 chr4D 85.542 249 18 7 2828 3063 156374327 156374084 1.090000e-60 244
26 TraesCS3A01G511600 chr1D 85.830 247 16 7 2828 3060 87846773 87847014 1.090000e-60 244
27 TraesCS3A01G511600 chr1D 87.558 217 12 4 2828 3034 20357649 20357860 1.830000e-58 237
28 TraesCS3A01G511600 chrUn 88.119 101 7 3 2963 3063 53182324 53182229 8.920000e-22 115
29 TraesCS3A01G511600 chr6A 89.474 95 5 3 2966 3060 455413646 455413735 8.920000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G511600 chr3A 731004635 731008564 3929 True 1610.800000 7258 94.771600 1 3930 5 chr3A.!!$R1 3929
1 TraesCS3A01G511600 chr3B 808972801 808976449 3648 False 1057.200000 3147 93.400400 1 3482 5 chr3B.!!$F1 3481
2 TraesCS3A01G511600 chr3D 602044028 602047170 3142 False 775.833333 2856 93.689667 278 3198 6 chr3D.!!$F4 2920
3 TraesCS3A01G511600 chr3D 602057749 602058412 663 False 636.000000 636 84.444000 2828 3482 1 chr3D.!!$F2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 224 0.248094 CACGCTGCAGATCAATGCTG 60.248 55.0 20.43 8.56 46.63 4.41 F
1849 2118 0.109597 CCGCAAATCTTCACAGCACC 60.110 55.0 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 2304 0.034186 TCCGCTGCAGGATTTCCATT 60.034 50.0 17.12 0.0 38.89 3.16 R
3723 4023 0.108520 AACCTGTCGACGTGTGTTGT 60.109 50.0 11.62 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 3.065786 GTGTTCATTGCATCCACGATGAT 59.934 43.478 5.82 0.00 42.09 2.45
73 74 3.811497 TGCATCCACGATGATCATTTCTC 59.189 43.478 10.14 0.00 42.09 2.87
74 75 4.063689 GCATCCACGATGATCATTTCTCT 58.936 43.478 10.14 0.00 42.09 3.10
76 77 5.539979 CATCCACGATGATCATTTCTCTCT 58.460 41.667 10.14 0.00 42.09 3.10
92 93 0.454620 CTCTGCGACACACGTACTCC 60.455 60.000 0.00 0.00 44.60 3.85
102 103 3.181469 ACACACGTACTCCATTCAACTGT 60.181 43.478 0.00 0.00 0.00 3.55
122 123 6.003950 ACTGTTGCTCTGCTAAGGAAAAATA 58.996 36.000 0.00 0.00 0.00 1.40
127 128 5.106157 TGCTCTGCTAAGGAAAAATAGTTGC 60.106 40.000 0.00 0.00 0.00 4.17
138 139 6.032717 GGAAAAATAGTTGCTCTGATCTTGC 58.967 40.000 0.00 0.00 0.00 4.01
140 141 3.808466 ATAGTTGCTCTGATCTTGCGA 57.192 42.857 0.00 0.00 0.00 5.10
142 143 1.274728 AGTTGCTCTGATCTTGCGACT 59.725 47.619 16.67 16.67 44.02 4.18
192 195 1.081892 AGTCTCACAATGCACATCGC 58.918 50.000 0.00 0.00 42.89 4.58
214 217 1.146637 GATGATCCACGCTGCAGATC 58.853 55.000 20.43 11.87 37.51 2.75
215 218 1.899617 TGATCCACGCTGCAGATCA 59.100 52.632 20.43 14.53 43.06 2.92
216 219 0.249955 TGATCCACGCTGCAGATCAA 59.750 50.000 20.43 0.00 42.50 2.57
217 220 1.134310 TGATCCACGCTGCAGATCAAT 60.134 47.619 20.43 3.18 42.50 2.57
218 221 1.263484 GATCCACGCTGCAGATCAATG 59.737 52.381 20.43 7.00 37.07 2.82
219 222 1.063649 CCACGCTGCAGATCAATGC 59.936 57.895 20.43 0.00 46.68 3.56
220 223 1.374343 CCACGCTGCAGATCAATGCT 61.374 55.000 20.43 0.00 46.63 3.79
221 224 0.248094 CACGCTGCAGATCAATGCTG 60.248 55.000 20.43 8.56 46.63 4.41
231 234 4.906423 CAGATCAATGCTGCTCAACTTAC 58.094 43.478 0.00 0.00 0.00 2.34
232 235 4.393990 CAGATCAATGCTGCTCAACTTACA 59.606 41.667 0.00 0.00 0.00 2.41
233 236 5.005740 AGATCAATGCTGCTCAACTTACAA 58.994 37.500 0.00 0.00 0.00 2.41
234 237 5.651139 AGATCAATGCTGCTCAACTTACAAT 59.349 36.000 0.00 0.00 0.00 2.71
235 238 5.050644 TCAATGCTGCTCAACTTACAATG 57.949 39.130 0.00 0.00 0.00 2.82
236 239 4.520111 TCAATGCTGCTCAACTTACAATGT 59.480 37.500 0.00 0.00 0.00 2.71
260 263 1.136329 ACCCACCTCCTGCTGTCAAT 61.136 55.000 0.00 0.00 0.00 2.57
457 465 1.452108 GCATGGTGGAGCACTACCC 60.452 63.158 13.89 0.00 45.30 3.69
626 669 0.443869 CGGTTTTGCACTCCAGATCG 59.556 55.000 0.00 0.00 0.00 3.69
636 679 2.664185 CCAGATCGGCTGCCATCG 60.664 66.667 20.29 14.63 43.50 3.84
637 680 2.418777 CAGATCGGCTGCCATCGA 59.581 61.111 20.29 10.73 37.90 3.59
682 735 2.032528 TGGACGGGCTGAAGCTTG 59.967 61.111 2.10 0.00 41.70 4.01
707 760 1.343069 CCTCTCCATGGGTAGGTAGC 58.657 60.000 19.84 0.00 0.00 3.58
708 761 1.343069 CTCTCCATGGGTAGGTAGCC 58.657 60.000 13.02 0.00 43.95 3.93
709 762 0.469331 TCTCCATGGGTAGGTAGCCG 60.469 60.000 13.02 0.00 46.56 5.52
712 765 2.847715 ATGGGTAGGTAGCCGGCC 60.848 66.667 26.15 8.83 46.56 6.13
713 766 3.707025 ATGGGTAGGTAGCCGGCCA 62.707 63.158 26.15 6.66 46.56 5.36
716 769 4.587189 GTAGGTAGCCGGCCAGCG 62.587 72.222 26.15 0.00 38.01 5.18
729 789 1.376037 CCAGCGTCACTTCTTCCCC 60.376 63.158 0.00 0.00 0.00 4.81
734 794 1.371558 GTCACTTCTTCCCCGCAGT 59.628 57.895 0.00 0.00 0.00 4.40
749 809 1.916651 CGCAGTCAGTCAATTCTCTCG 59.083 52.381 0.00 0.00 0.00 4.04
879 942 4.508461 GCATTGGCATATTAGTGCATCA 57.492 40.909 0.00 0.00 46.81 3.07
880 943 4.482386 GCATTGGCATATTAGTGCATCAG 58.518 43.478 0.00 0.00 46.81 2.90
881 944 4.022589 GCATTGGCATATTAGTGCATCAGT 60.023 41.667 0.00 0.00 46.81 3.41
888 951 6.344500 GCATATTAGTGCATCAGTATAGCCT 58.656 40.000 0.00 0.00 44.43 4.58
907 970 0.393402 TGCATCACACATCTGCCTCC 60.393 55.000 0.00 0.00 35.02 4.30
914 977 1.271597 ACACATCTGCCTCCAAAGTCC 60.272 52.381 0.00 0.00 0.00 3.85
974 1049 1.771255 GCTGTACCATTGATCCCCTCT 59.229 52.381 0.00 0.00 0.00 3.69
983 1070 2.015456 TGATCCCCTCTACATCGCAT 57.985 50.000 0.00 0.00 0.00 4.73
1113 1200 2.749044 CTCCCATGTGCGCTGCTT 60.749 61.111 9.73 0.00 0.00 3.91
1203 1290 2.727123 TTGCTGTGGTTCTCAAGGAA 57.273 45.000 0.00 0.00 0.00 3.36
1251 1341 0.618458 TCCAACTCCAGGTACCATGC 59.382 55.000 15.94 0.00 0.00 4.06
1274 1364 5.934625 GCCTCATGTCTTCTGTTTTCTTCTA 59.065 40.000 0.00 0.00 0.00 2.10
1275 1365 6.091986 GCCTCATGTCTTCTGTTTTCTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
1277 1367 7.330700 CCTCATGTCTTCTGTTTTCTTCTAGTC 59.669 40.741 0.00 0.00 0.00 2.59
1278 1368 6.863645 TCATGTCTTCTGTTTTCTTCTAGTCG 59.136 38.462 0.00 0.00 0.00 4.18
1279 1369 6.387041 TGTCTTCTGTTTTCTTCTAGTCGA 57.613 37.500 0.00 0.00 0.00 4.20
1280 1370 6.802608 TGTCTTCTGTTTTCTTCTAGTCGAA 58.197 36.000 0.00 0.00 0.00 3.71
1282 1372 8.573885 TGTCTTCTGTTTTCTTCTAGTCGAATA 58.426 33.333 0.00 0.00 0.00 1.75
1283 1373 9.575783 GTCTTCTGTTTTCTTCTAGTCGAATAT 57.424 33.333 0.00 0.00 0.00 1.28
1284 1374 9.574458 TCTTCTGTTTTCTTCTAGTCGAATATG 57.426 33.333 0.00 0.00 0.00 1.78
1285 1375 8.703604 TTCTGTTTTCTTCTAGTCGAATATGG 57.296 34.615 0.00 0.00 0.00 2.74
1286 1376 8.063200 TCTGTTTTCTTCTAGTCGAATATGGA 57.937 34.615 0.00 0.00 0.00 3.41
1287 1377 8.696374 TCTGTTTTCTTCTAGTCGAATATGGAT 58.304 33.333 0.00 0.00 0.00 3.41
1288 1378 8.648557 TGTTTTCTTCTAGTCGAATATGGATG 57.351 34.615 0.00 0.00 0.00 3.51
1289 1379 7.224753 TGTTTTCTTCTAGTCGAATATGGATGC 59.775 37.037 0.00 0.00 0.00 3.91
1290 1380 6.405278 TTCTTCTAGTCGAATATGGATGCA 57.595 37.500 0.00 0.00 0.00 3.96
1295 1545 2.968574 AGTCGAATATGGATGCACCTCT 59.031 45.455 0.00 0.00 39.86 3.69
1307 1557 5.013079 TGGATGCACCTCTCTTTTCTTTCTA 59.987 40.000 0.00 0.00 39.86 2.10
1330 1580 2.965147 TCGAATATGGATGCACCTCTCA 59.035 45.455 0.00 0.00 39.86 3.27
1414 1665 7.448469 ACCAGGTGTATGAAATAGGAATATTGC 59.552 37.037 0.00 0.00 0.00 3.56
1730 1999 4.336433 CAGACCTGAAAACAAAGCTCAAGA 59.664 41.667 0.00 0.00 0.00 3.02
1764 2033 0.169009 GCCACAATCCTCAAGAACGC 59.831 55.000 0.00 0.00 0.00 4.84
1849 2118 0.109597 CCGCAAATCTTCACAGCACC 60.110 55.000 0.00 0.00 0.00 5.01
1861 2130 1.003839 CAGCACCCGGAAAGCACTA 60.004 57.895 0.73 0.00 0.00 2.74
1868 2137 1.407437 CCCGGAAAGCACTAGAAGCAT 60.407 52.381 0.73 0.21 0.00 3.79
1873 2142 4.119136 GGAAAGCACTAGAAGCATCTCTC 58.881 47.826 12.97 3.73 37.10 3.20
1885 2154 2.828520 AGCATCTCTCAAGGAACGAGAA 59.171 45.455 0.00 0.00 38.99 2.87
1935 2204 4.098044 AGTCACGAGTCTTGAGAAAACTCA 59.902 41.667 0.00 0.00 39.49 3.41
2035 2304 1.117994 CTGACCAGATGGCAGCTCTA 58.882 55.000 0.27 0.00 39.32 2.43
2123 2392 4.142643 GGACTACAGACAGAAAGGTCGTAG 60.143 50.000 16.27 16.27 43.01 3.51
2158 2427 1.298788 GGCACGAACAAACCCAACG 60.299 57.895 0.00 0.00 0.00 4.10
2331 2600 2.504163 AAGCTCGCAGTCAGAGGCAG 62.504 60.000 0.00 0.00 36.31 4.85
2337 2606 2.025969 CAGTCAGAGGCAGCACACG 61.026 63.158 0.00 0.00 0.00 4.49
2347 2616 0.867746 GCAGCACACGAGTTGATGAA 59.132 50.000 5.36 0.00 0.00 2.57
2447 2716 1.487482 GCGGAACAAGAAGGTTTTGC 58.513 50.000 0.00 0.00 0.00 3.68
2461 2730 1.336755 GTTTTGCCCGACAGTCATGTT 59.663 47.619 0.41 0.00 40.68 2.71
2506 2775 2.359230 GACCAGCAGGACAGCCAC 60.359 66.667 0.35 0.00 38.69 5.01
2527 2796 6.524734 CCACCATGTCAGATATAACAAGCTA 58.475 40.000 0.00 0.00 0.00 3.32
2539 2808 8.982723 AGATATAACAAGCTACTTGAGAAGGAA 58.017 33.333 13.94 0.00 43.42 3.36
2551 2820 4.829064 TGAGAAGGAAAACATCAAACCG 57.171 40.909 0.00 0.00 0.00 4.44
2619 2888 5.942826 AGATCTCCAAAGATGAAACCAAGAC 59.057 40.000 0.00 0.00 42.46 3.01
2630 2899 3.621268 TGAAACCAAGACGAAGAACAGTG 59.379 43.478 0.00 0.00 0.00 3.66
2731 3003 7.506938 TCCAAAGATGAAACCAAGAAGAAGAAT 59.493 33.333 0.00 0.00 0.00 2.40
2810 3082 1.913762 AGACCGAGACAAGGGGTGG 60.914 63.158 0.00 0.00 33.28 4.61
3039 3320 1.999648 ATGCCATTTCCATATGCCGT 58.000 45.000 0.00 0.00 0.00 5.68
3175 3458 8.743099 GTTTGCAACACTAGACTAAATTTGTTC 58.257 33.333 0.00 0.00 0.00 3.18
3202 3486 5.067954 AGTATTGTAATTATTCCGCCCCAC 58.932 41.667 0.00 0.00 0.00 4.61
3210 3495 0.331278 ATTCCGCCCCACTGATTTCA 59.669 50.000 0.00 0.00 0.00 2.69
3212 3497 0.331278 TCCGCCCCACTGATTTCATT 59.669 50.000 0.00 0.00 0.00 2.57
3224 3509 7.318141 CCACTGATTTCATTAGCAAGAATGTT 58.682 34.615 6.07 0.00 37.92 2.71
3258 3547 3.741075 CGGACAAGCAATATGGTAGCTCA 60.741 47.826 0.00 0.00 37.70 4.26
3280 3569 6.567959 TCAAAAACTACAAACATGCATGTCA 58.432 32.000 31.45 16.07 40.80 3.58
3281 3570 7.208777 TCAAAAACTACAAACATGCATGTCAT 58.791 30.769 31.45 20.60 40.80 3.06
3322 3611 7.715249 ACACAACAAGTTATAGTGTCAGAACAT 59.285 33.333 0.00 0.00 38.98 2.71
3329 3618 7.161404 AGTTATAGTGTCAGAACATGCTTGAA 58.839 34.615 6.60 0.00 37.81 2.69
3330 3619 7.826252 AGTTATAGTGTCAGAACATGCTTGAAT 59.174 33.333 6.60 0.00 37.81 2.57
3331 3620 9.098355 GTTATAGTGTCAGAACATGCTTGAATA 57.902 33.333 6.60 0.00 37.81 1.75
3361 3654 3.005554 GTGCAACACTGAGTAGATGCAT 58.994 45.455 17.91 0.00 40.58 3.96
3375 3668 8.743714 TGAGTAGATGCATATAGGTGAACATAG 58.256 37.037 0.16 0.00 0.00 2.23
3377 3670 8.744652 AGTAGATGCATATAGGTGAACATAGTC 58.255 37.037 0.16 0.00 0.00 2.59
3378 3671 7.789202 AGATGCATATAGGTGAACATAGTCT 57.211 36.000 0.00 0.00 0.00 3.24
3381 3674 9.743057 GATGCATATAGGTGAACATAGTCTATC 57.257 37.037 0.00 0.00 0.00 2.08
3382 3675 8.650143 TGCATATAGGTGAACATAGTCTATCA 57.350 34.615 0.00 0.00 0.00 2.15
3401 3694 5.674052 ATCACACAGCTATTCAGAACTCT 57.326 39.130 0.00 0.00 0.00 3.24
3403 3696 4.281941 TCACACAGCTATTCAGAACTCTGT 59.718 41.667 6.61 7.58 44.12 3.41
3417 3710 5.861251 CAGAACTCTGTCGGAATATAGCATC 59.139 44.000 0.00 0.00 39.09 3.91
3420 3713 6.161855 ACTCTGTCGGAATATAGCATCAAA 57.838 37.500 0.00 0.00 0.00 2.69
3465 3761 9.987272 CACATGAGAAATGGAGATAGTACAATA 57.013 33.333 0.00 0.00 0.00 1.90
3494 3794 9.363763 GGATGAGTAAAGTAGTACAAACTAACC 57.636 37.037 2.52 4.14 39.90 2.85
3495 3795 8.976986 ATGAGTAAAGTAGTACAAACTAACCG 57.023 34.615 2.52 0.00 39.90 4.44
3496 3796 7.940850 TGAGTAAAGTAGTACAAACTAACCGT 58.059 34.615 2.52 0.00 39.90 4.83
3497 3797 7.862372 TGAGTAAAGTAGTACAAACTAACCGTG 59.138 37.037 2.52 0.00 39.90 4.94
3498 3798 7.716612 AGTAAAGTAGTACAAACTAACCGTGT 58.283 34.615 2.52 0.00 39.90 4.49
3499 3799 8.846211 AGTAAAGTAGTACAAACTAACCGTGTA 58.154 33.333 2.52 0.00 39.90 2.90
3500 3800 7.930513 AAAGTAGTACAAACTAACCGTGTAC 57.069 36.000 2.52 5.29 45.15 2.90
3501 3801 6.013842 AGTAGTACAAACTAACCGTGTACC 57.986 41.667 2.52 0.00 45.68 3.34
3502 3802 5.770162 AGTAGTACAAACTAACCGTGTACCT 59.230 40.000 2.52 0.00 45.68 3.08
3503 3803 5.126396 AGTACAAACTAACCGTGTACCTC 57.874 43.478 9.04 0.00 45.68 3.85
3504 3804 4.829492 AGTACAAACTAACCGTGTACCTCT 59.171 41.667 9.04 0.00 45.68 3.69
3505 3805 3.986277 ACAAACTAACCGTGTACCTCTG 58.014 45.455 0.00 0.00 0.00 3.35
3506 3806 2.735134 CAAACTAACCGTGTACCTCTGC 59.265 50.000 0.00 0.00 0.00 4.26
3507 3807 1.624336 ACTAACCGTGTACCTCTGCA 58.376 50.000 0.00 0.00 0.00 4.41
3508 3808 1.544691 ACTAACCGTGTACCTCTGCAG 59.455 52.381 7.63 7.63 0.00 4.41
3509 3809 0.245539 TAACCGTGTACCTCTGCAGC 59.754 55.000 9.47 0.00 0.00 5.25
3510 3810 1.472662 AACCGTGTACCTCTGCAGCT 61.473 55.000 9.47 0.00 0.00 4.24
3511 3811 1.293498 CCGTGTACCTCTGCAGCTT 59.707 57.895 9.47 0.00 0.00 3.74
3512 3812 1.016130 CCGTGTACCTCTGCAGCTTG 61.016 60.000 9.47 1.88 0.00 4.01
3513 3813 1.016130 CGTGTACCTCTGCAGCTTGG 61.016 60.000 9.47 13.29 0.00 3.61
3514 3814 0.321671 GTGTACCTCTGCAGCTTGGA 59.678 55.000 21.39 3.01 0.00 3.53
3515 3815 1.065854 GTGTACCTCTGCAGCTTGGAT 60.066 52.381 21.39 11.42 0.00 3.41
3516 3816 1.208052 TGTACCTCTGCAGCTTGGATC 59.792 52.381 21.39 14.88 0.00 3.36
3517 3817 0.461548 TACCTCTGCAGCTTGGATCG 59.538 55.000 21.39 2.16 0.00 3.69
3518 3818 2.178890 CCTCTGCAGCTTGGATCGC 61.179 63.158 9.47 0.00 0.00 4.58
3519 3819 2.510012 TCTGCAGCTTGGATCGCG 60.510 61.111 9.47 0.00 0.00 5.87
3520 3820 2.816958 CTGCAGCTTGGATCGCGT 60.817 61.111 5.77 0.00 0.00 6.01
3521 3821 1.519234 CTGCAGCTTGGATCGCGTA 60.519 57.895 5.77 0.00 0.00 4.42
3522 3822 0.877649 CTGCAGCTTGGATCGCGTAT 60.878 55.000 5.77 0.00 0.00 3.06
3523 3823 0.875908 TGCAGCTTGGATCGCGTATC 60.876 55.000 5.77 7.99 0.00 2.24
3531 3831 3.393112 GATCGCGTATCCTCTCAGC 57.607 57.895 5.77 0.00 0.00 4.26
3533 3833 2.050895 CGCGTATCCTCTCAGCGG 60.051 66.667 0.00 0.00 46.06 5.52
3534 3834 2.835705 CGCGTATCCTCTCAGCGGT 61.836 63.158 0.00 0.00 46.06 5.68
3535 3835 1.299468 GCGTATCCTCTCAGCGGTG 60.299 63.158 8.67 8.67 0.00 4.94
3536 3836 1.299468 CGTATCCTCTCAGCGGTGC 60.299 63.158 10.38 0.00 0.00 5.01
3537 3837 1.816537 GTATCCTCTCAGCGGTGCA 59.183 57.895 10.38 0.00 0.00 4.57
3538 3838 0.528684 GTATCCTCTCAGCGGTGCAC 60.529 60.000 8.80 8.80 0.00 4.57
3572 3872 1.082366 CACGGTTGCACGTAAAGGC 60.082 57.895 1.70 0.00 46.75 4.35
3573 3873 1.524165 ACGGTTGCACGTAAAGGCA 60.524 52.632 0.00 0.00 46.58 4.75
3574 3874 0.887387 ACGGTTGCACGTAAAGGCAT 60.887 50.000 0.00 0.00 46.58 4.40
3575 3875 0.179200 CGGTTGCACGTAAAGGCATC 60.179 55.000 0.00 0.00 40.17 3.91
3576 3876 1.165270 GGTTGCACGTAAAGGCATCT 58.835 50.000 0.00 0.00 40.17 2.90
3577 3877 1.130561 GGTTGCACGTAAAGGCATCTC 59.869 52.381 0.00 0.00 40.17 2.75
3578 3878 1.130561 GTTGCACGTAAAGGCATCTCC 59.869 52.381 0.00 0.00 40.17 3.71
3579 3879 0.323302 TGCACGTAAAGGCATCTCCA 59.677 50.000 0.00 0.00 37.29 3.86
3580 3880 1.009829 GCACGTAAAGGCATCTCCAG 58.990 55.000 0.00 0.00 37.29 3.86
3581 3881 1.676014 GCACGTAAAGGCATCTCCAGT 60.676 52.381 0.00 0.00 37.29 4.00
3582 3882 2.002586 CACGTAAAGGCATCTCCAGTG 58.997 52.381 0.00 0.00 37.29 3.66
3583 3883 1.066143 ACGTAAAGGCATCTCCAGTGG 60.066 52.381 1.40 1.40 37.29 4.00
3584 3884 1.383523 GTAAAGGCATCTCCAGTGGC 58.616 55.000 3.51 0.00 41.96 5.01
3585 3885 0.991146 TAAAGGCATCTCCAGTGGCA 59.009 50.000 3.51 0.00 43.86 4.92
3586 3886 0.323178 AAAGGCATCTCCAGTGGCAG 60.323 55.000 3.51 3.22 43.86 4.85
3587 3887 1.203441 AAGGCATCTCCAGTGGCAGA 61.203 55.000 3.51 8.96 43.86 4.26
3588 3888 1.203441 AGGCATCTCCAGTGGCAGAA 61.203 55.000 3.51 0.00 43.86 3.02
3589 3889 1.028868 GGCATCTCCAGTGGCAGAAC 61.029 60.000 3.51 5.58 41.35 3.01
3590 3890 1.028868 GCATCTCCAGTGGCAGAACC 61.029 60.000 3.51 1.09 39.84 3.62
3591 3891 0.393537 CATCTCCAGTGGCAGAACCC 60.394 60.000 3.51 0.00 37.83 4.11
3592 3892 1.566298 ATCTCCAGTGGCAGAACCCC 61.566 60.000 3.51 0.00 37.83 4.95
3593 3893 3.256960 TCCAGTGGCAGAACCCCC 61.257 66.667 3.51 0.00 37.83 5.40
3607 3907 3.498178 CCCCCACTTTCCCCGTAA 58.502 61.111 0.00 0.00 0.00 3.18
3608 3908 2.004270 CCCCCACTTTCCCCGTAAT 58.996 57.895 0.00 0.00 0.00 1.89
3609 3909 0.395173 CCCCCACTTTCCCCGTAATG 60.395 60.000 0.00 0.00 0.00 1.90
3610 3910 0.330267 CCCCACTTTCCCCGTAATGT 59.670 55.000 0.00 0.00 0.00 2.71
3611 3911 1.680860 CCCCACTTTCCCCGTAATGTC 60.681 57.143 0.00 0.00 0.00 3.06
3612 3912 1.365699 CCACTTTCCCCGTAATGTCG 58.634 55.000 0.00 0.00 0.00 4.35
3619 3919 2.105528 CCGTAATGTCGGTCCGGG 59.894 66.667 12.29 0.00 44.77 5.73
3620 3920 2.417257 CCGTAATGTCGGTCCGGGA 61.417 63.158 12.29 0.00 44.77 5.14
3621 3921 1.065273 CGTAATGTCGGTCCGGGAG 59.935 63.158 12.29 0.00 0.00 4.30
3622 3922 1.378882 CGTAATGTCGGTCCGGGAGA 61.379 60.000 12.29 0.00 0.00 3.71
3623 3923 1.038280 GTAATGTCGGTCCGGGAGAT 58.962 55.000 12.29 0.00 0.00 2.75
3624 3924 1.411612 GTAATGTCGGTCCGGGAGATT 59.588 52.381 12.29 6.03 32.81 2.40
3625 3925 0.464452 AATGTCGGTCCGGGAGATTC 59.536 55.000 12.29 0.00 0.00 2.52
3626 3926 1.400530 ATGTCGGTCCGGGAGATTCC 61.401 60.000 12.29 0.00 35.23 3.01
3633 3933 3.470888 CGGGAGATTCCGGGCAGT 61.471 66.667 0.00 0.00 45.78 4.40
3634 3934 2.190578 GGGAGATTCCGGGCAGTG 59.809 66.667 0.00 0.00 37.43 3.66
3635 3935 2.670148 GGGAGATTCCGGGCAGTGT 61.670 63.158 0.00 0.00 37.43 3.55
3636 3936 1.153349 GGAGATTCCGGGCAGTGTC 60.153 63.158 0.00 0.00 0.00 3.67
3637 3937 1.596934 GAGATTCCGGGCAGTGTCA 59.403 57.895 0.00 0.00 0.00 3.58
3638 3938 0.179000 GAGATTCCGGGCAGTGTCAT 59.821 55.000 0.00 0.00 0.00 3.06
3639 3939 1.412710 GAGATTCCGGGCAGTGTCATA 59.587 52.381 0.00 0.00 0.00 2.15
3640 3940 1.139058 AGATTCCGGGCAGTGTCATAC 59.861 52.381 0.00 0.00 0.00 2.39
3641 3941 0.180406 ATTCCGGGCAGTGTCATACC 59.820 55.000 0.00 0.00 0.00 2.73
3642 3942 0.907704 TTCCGGGCAGTGTCATACCT 60.908 55.000 0.00 0.00 0.00 3.08
3643 3943 1.144057 CCGGGCAGTGTCATACCTC 59.856 63.158 0.00 0.00 0.00 3.85
3644 3944 1.613317 CCGGGCAGTGTCATACCTCA 61.613 60.000 0.00 0.00 0.00 3.86
3645 3945 0.249120 CGGGCAGTGTCATACCTCAA 59.751 55.000 0.00 0.00 0.00 3.02
3646 3946 1.338674 CGGGCAGTGTCATACCTCAAA 60.339 52.381 0.00 0.00 0.00 2.69
3647 3947 2.084546 GGGCAGTGTCATACCTCAAAC 58.915 52.381 0.00 0.00 0.00 2.93
3648 3948 1.732259 GGCAGTGTCATACCTCAAACG 59.268 52.381 0.00 0.00 0.00 3.60
3649 3949 2.413837 GCAGTGTCATACCTCAAACGT 58.586 47.619 0.00 0.00 0.00 3.99
3650 3950 2.412089 GCAGTGTCATACCTCAAACGTC 59.588 50.000 0.00 0.00 0.00 4.34
3651 3951 3.861131 GCAGTGTCATACCTCAAACGTCT 60.861 47.826 0.00 0.00 0.00 4.18
3652 3952 3.675225 CAGTGTCATACCTCAAACGTCTG 59.325 47.826 0.00 0.00 0.00 3.51
3653 3953 2.412089 GTGTCATACCTCAAACGTCTGC 59.588 50.000 0.00 0.00 0.00 4.26
3654 3954 2.036604 TGTCATACCTCAAACGTCTGCA 59.963 45.455 0.00 0.00 0.00 4.41
3655 3955 3.064207 GTCATACCTCAAACGTCTGCAA 58.936 45.455 0.00 0.00 0.00 4.08
3656 3956 3.496884 GTCATACCTCAAACGTCTGCAAA 59.503 43.478 0.00 0.00 0.00 3.68
3657 3957 4.024387 GTCATACCTCAAACGTCTGCAAAA 60.024 41.667 0.00 0.00 0.00 2.44
3658 3958 4.576873 TCATACCTCAAACGTCTGCAAAAA 59.423 37.500 0.00 0.00 0.00 1.94
3659 3959 3.420839 ACCTCAAACGTCTGCAAAAAG 57.579 42.857 0.00 0.00 0.00 2.27
3660 3960 3.013921 ACCTCAAACGTCTGCAAAAAGA 58.986 40.909 0.00 0.00 0.00 2.52
3661 3961 3.065371 ACCTCAAACGTCTGCAAAAAGAG 59.935 43.478 0.00 0.00 0.00 2.85
3662 3962 3.312421 CCTCAAACGTCTGCAAAAAGAGA 59.688 43.478 0.00 0.00 0.00 3.10
3663 3963 4.201910 CCTCAAACGTCTGCAAAAAGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
3664 3964 5.303747 TCAAACGTCTGCAAAAAGAGAAA 57.696 34.783 0.00 0.00 0.00 2.52
3665 3965 5.704888 TCAAACGTCTGCAAAAAGAGAAAA 58.295 33.333 0.00 0.00 0.00 2.29
3666 3966 5.799936 TCAAACGTCTGCAAAAAGAGAAAAG 59.200 36.000 0.00 0.00 0.00 2.27
3667 3967 5.560966 AACGTCTGCAAAAAGAGAAAAGA 57.439 34.783 0.00 0.00 0.00 2.52
3668 3968 5.560966 ACGTCTGCAAAAAGAGAAAAGAA 57.439 34.783 0.00 0.00 0.00 2.52
3669 3969 5.949735 ACGTCTGCAAAAAGAGAAAAGAAA 58.050 33.333 0.00 0.00 0.00 2.52
3670 3970 6.386654 ACGTCTGCAAAAAGAGAAAAGAAAA 58.613 32.000 0.00 0.00 0.00 2.29
3671 3971 6.866248 ACGTCTGCAAAAAGAGAAAAGAAAAA 59.134 30.769 0.00 0.00 0.00 1.94
3698 3998 4.292977 CTTTGTCAACAACAGAGTTCCC 57.707 45.455 0.00 0.00 39.58 3.97
3699 3999 2.341846 TGTCAACAACAGAGTTCCCC 57.658 50.000 0.00 0.00 32.81 4.81
3700 4000 1.562008 TGTCAACAACAGAGTTCCCCA 59.438 47.619 0.00 0.00 32.81 4.96
3701 4001 2.025793 TGTCAACAACAGAGTTCCCCAA 60.026 45.455 0.00 0.00 32.81 4.12
3702 4002 3.020984 GTCAACAACAGAGTTCCCCAAA 58.979 45.455 0.00 0.00 0.00 3.28
3703 4003 3.020984 TCAACAACAGAGTTCCCCAAAC 58.979 45.455 0.00 0.00 38.21 2.93
3704 4004 7.796075 TGTCAACAACAGAGTTCCCCAAACT 62.796 44.000 0.00 0.00 41.20 2.66
3705 4005 8.493090 TGTCAACAACAGAGTTCCCCAAACTA 62.493 42.308 0.00 0.00 39.68 2.24
3706 4006 9.704357 TGTCAACAACAGAGTTCCCCAAACTAT 62.704 40.741 0.00 0.00 39.68 2.12
3711 4011 1.734163 AGTTCCCCAAACTATTCGCG 58.266 50.000 0.00 0.00 46.55 5.87
3712 4012 1.276989 AGTTCCCCAAACTATTCGCGA 59.723 47.619 3.71 3.71 46.55 5.87
3713 4013 1.664151 GTTCCCCAAACTATTCGCGAG 59.336 52.381 9.59 0.00 34.85 5.03
3714 4014 0.177141 TCCCCAAACTATTCGCGAGG 59.823 55.000 9.59 4.96 0.00 4.63
3715 4015 0.814010 CCCCAAACTATTCGCGAGGG 60.814 60.000 17.91 17.91 34.58 4.30
3716 4016 1.436983 CCCAAACTATTCGCGAGGGC 61.437 60.000 13.63 0.00 0.00 5.19
3728 4028 4.980805 GAGGGCGTGGCGACAACA 62.981 66.667 0.00 0.00 46.06 3.33
3731 4031 4.307908 GGCGTGGCGACAACACAC 62.308 66.667 0.00 0.00 46.06 3.82
3734 4034 2.624264 GTGGCGACAACACACGTC 59.376 61.111 0.00 0.00 46.06 4.34
3740 4040 2.213483 GACAACACACGTCGACAGG 58.787 57.895 17.16 9.15 0.00 4.00
3741 4041 0.526954 GACAACACACGTCGACAGGT 60.527 55.000 17.16 9.85 0.00 4.00
3742 4042 0.108520 ACAACACACGTCGACAGGTT 60.109 50.000 17.16 10.43 0.00 3.50
3743 4043 1.134753 ACAACACACGTCGACAGGTTA 59.865 47.619 17.16 0.00 0.00 2.85
3744 4044 2.223876 ACAACACACGTCGACAGGTTAT 60.224 45.455 17.16 0.07 0.00 1.89
3745 4045 2.798283 CAACACACGTCGACAGGTTATT 59.202 45.455 17.16 6.69 0.00 1.40
3746 4046 2.669364 ACACACGTCGACAGGTTATTC 58.331 47.619 17.16 0.00 0.00 1.75
3747 4047 1.647213 CACACGTCGACAGGTTATTCG 59.353 52.381 17.16 0.08 36.55 3.34
3748 4048 0.638746 CACGTCGACAGGTTATTCGC 59.361 55.000 17.16 0.00 35.15 4.70
3749 4049 0.241749 ACGTCGACAGGTTATTCGCA 59.758 50.000 17.16 0.00 35.15 5.10
3750 4050 0.638746 CGTCGACAGGTTATTCGCAC 59.361 55.000 17.16 0.00 35.15 5.34
3751 4051 1.705256 GTCGACAGGTTATTCGCACA 58.295 50.000 11.55 0.00 35.15 4.57
3752 4052 2.268298 GTCGACAGGTTATTCGCACAT 58.732 47.619 11.55 0.00 35.15 3.21
3753 4053 2.671396 GTCGACAGGTTATTCGCACATT 59.329 45.455 11.55 0.00 35.15 2.71
3754 4054 3.124636 GTCGACAGGTTATTCGCACATTT 59.875 43.478 11.55 0.00 35.15 2.32
3755 4055 3.124466 TCGACAGGTTATTCGCACATTTG 59.876 43.478 0.00 0.00 35.15 2.32
3756 4056 3.171277 GACAGGTTATTCGCACATTTGC 58.829 45.455 0.00 0.00 46.21 3.68
3772 4072 3.246403 TGCCAGTGCATTTCATCGA 57.754 47.368 0.00 0.00 44.23 3.59
3773 4073 1.532523 TGCCAGTGCATTTCATCGAA 58.467 45.000 0.00 0.00 44.23 3.71
3774 4074 1.199789 TGCCAGTGCATTTCATCGAAC 59.800 47.619 0.00 0.00 44.23 3.95
3775 4075 1.199789 GCCAGTGCATTTCATCGAACA 59.800 47.619 0.00 0.00 37.47 3.18
3776 4076 2.730090 GCCAGTGCATTTCATCGAACAG 60.730 50.000 0.00 0.00 37.47 3.16
3777 4077 2.159476 CCAGTGCATTTCATCGAACAGG 60.159 50.000 0.00 0.00 0.00 4.00
3778 4078 2.485426 CAGTGCATTTCATCGAACAGGT 59.515 45.455 0.00 0.00 0.00 4.00
3779 4079 3.058016 CAGTGCATTTCATCGAACAGGTT 60.058 43.478 0.00 0.00 0.00 3.50
3780 4080 3.058016 AGTGCATTTCATCGAACAGGTTG 60.058 43.478 0.00 0.00 0.00 3.77
3781 4081 2.228582 TGCATTTCATCGAACAGGTTGG 59.771 45.455 0.00 0.00 0.00 3.77
3782 4082 2.415893 GCATTTCATCGAACAGGTTGGG 60.416 50.000 0.00 0.00 0.00 4.12
3783 4083 2.649531 TTTCATCGAACAGGTTGGGT 57.350 45.000 0.00 0.00 0.00 4.51
3784 4084 1.890876 TTCATCGAACAGGTTGGGTG 58.109 50.000 1.51 1.51 31.78 4.61
3785 4085 0.605319 TCATCGAACAGGTTGGGTGC 60.605 55.000 2.94 0.00 30.80 5.01
3786 4086 0.888736 CATCGAACAGGTTGGGTGCA 60.889 55.000 0.00 0.00 0.00 4.57
3787 4087 0.889186 ATCGAACAGGTTGGGTGCAC 60.889 55.000 8.80 8.80 0.00 4.57
3788 4088 1.525995 CGAACAGGTTGGGTGCACT 60.526 57.895 17.98 0.00 0.00 4.40
3789 4089 1.785041 CGAACAGGTTGGGTGCACTG 61.785 60.000 17.98 8.42 37.01 3.66
3790 4090 2.075426 GAACAGGTTGGGTGCACTGC 62.075 60.000 17.98 0.00 34.40 4.40
3791 4091 2.203394 CAGGTTGGGTGCACTGCT 60.203 61.111 17.98 0.00 0.00 4.24
3792 4092 2.203394 AGGTTGGGTGCACTGCTG 60.203 61.111 17.98 0.00 0.00 4.41
3793 4093 2.519302 GGTTGGGTGCACTGCTGT 60.519 61.111 17.98 0.00 0.00 4.40
3794 4094 2.723746 GTTGGGTGCACTGCTGTG 59.276 61.111 17.98 18.54 46.37 3.66
3795 4095 2.519063 TTGGGTGCACTGCTGTGG 60.519 61.111 23.15 7.23 43.97 4.17
3796 4096 3.357444 TTGGGTGCACTGCTGTGGT 62.357 57.895 23.15 0.00 43.97 4.16
3797 4097 3.289834 GGGTGCACTGCTGTGGTG 61.290 66.667 23.15 9.93 43.97 4.17
3798 4098 3.289834 GGTGCACTGCTGTGGTGG 61.290 66.667 23.15 0.36 43.97 4.61
3799 4099 2.203195 GTGCACTGCTGTGGTGGA 60.203 61.111 23.15 7.66 43.97 4.02
3800 4100 2.111669 TGCACTGCTGTGGTGGAG 59.888 61.111 23.15 0.00 43.97 3.86
3801 4101 2.670934 GCACTGCTGTGGTGGAGG 60.671 66.667 23.15 0.00 43.97 4.30
3802 4102 2.670934 CACTGCTGTGGTGGAGGC 60.671 66.667 15.43 0.00 40.33 4.70
3803 4103 3.958860 ACTGCTGTGGTGGAGGCC 61.959 66.667 0.00 0.00 0.00 5.19
3807 4107 3.625897 CTGTGGTGGAGGCCGACA 61.626 66.667 0.00 0.00 0.00 4.35
3808 4108 2.927856 TGTGGTGGAGGCCGACAT 60.928 61.111 5.70 0.00 0.00 3.06
3809 4109 2.436646 GTGGTGGAGGCCGACATG 60.437 66.667 5.70 0.00 0.00 3.21
3810 4110 2.927856 TGGTGGAGGCCGACATGT 60.928 61.111 0.00 0.00 0.00 3.21
3811 4111 2.436646 GGTGGAGGCCGACATGTG 60.437 66.667 1.15 0.00 0.00 3.21
3812 4112 2.347490 GTGGAGGCCGACATGTGT 59.653 61.111 1.15 0.00 0.00 3.72
3813 4113 1.302511 GTGGAGGCCGACATGTGTT 60.303 57.895 1.15 0.00 0.00 3.32
3814 4114 1.302431 TGGAGGCCGACATGTGTTG 60.302 57.895 1.15 0.00 0.00 3.33
3815 4115 1.302511 GGAGGCCGACATGTGTTGT 60.303 57.895 1.15 0.00 42.79 3.32
3822 4122 1.204062 GACATGTGTTGTCGCCACG 59.796 57.895 1.15 0.00 45.00 4.94
3823 4123 2.127270 CATGTGTTGTCGCCACGC 60.127 61.111 0.00 0.00 35.56 5.34
3824 4124 3.353836 ATGTGTTGTCGCCACGCC 61.354 61.111 0.00 0.00 35.56 5.68
3827 4127 4.980805 TGTTGTCGCCACGCCCTC 62.981 66.667 0.00 0.00 0.00 4.30
3842 4142 3.068691 CTCGCGAGGGGGACTTGA 61.069 66.667 28.40 0.00 31.73 3.02
3843 4143 3.068691 TCGCGAGGGGGACTTGAG 61.069 66.667 3.71 0.00 31.73 3.02
3844 4144 4.148825 CGCGAGGGGGACTTGAGG 62.149 72.222 0.00 0.00 31.73 3.86
3845 4145 4.475135 GCGAGGGGGACTTGAGGC 62.475 72.222 0.00 0.00 31.73 4.70
3846 4146 4.148825 CGAGGGGGACTTGAGGCG 62.149 72.222 0.00 0.00 31.73 5.52
3847 4147 4.475135 GAGGGGGACTTGAGGCGC 62.475 72.222 0.00 0.00 0.00 6.53
3849 4149 4.785453 GGGGGACTTGAGGCGCTG 62.785 72.222 7.64 0.00 0.00 5.18
3850 4150 4.021925 GGGGACTTGAGGCGCTGT 62.022 66.667 7.64 0.00 0.00 4.40
3851 4151 2.435059 GGGACTTGAGGCGCTGTC 60.435 66.667 7.64 5.24 0.00 3.51
3852 4152 2.435059 GGACTTGAGGCGCTGTCC 60.435 66.667 7.64 13.45 41.52 4.02
3853 4153 2.659610 GACTTGAGGCGCTGTCCT 59.340 61.111 7.64 0.00 39.67 3.85
3902 4202 4.803426 GGAGTGCCCTCGTCGCTG 62.803 72.222 0.00 0.00 38.70 5.18
3908 4208 4.457496 CCCTCGTCGCTGCATGGT 62.457 66.667 0.00 0.00 0.00 3.55
3909 4209 3.190849 CCTCGTCGCTGCATGGTG 61.191 66.667 0.00 0.00 0.00 4.17
3910 4210 3.190849 CTCGTCGCTGCATGGTGG 61.191 66.667 0.00 0.00 0.00 4.61
3928 4228 3.854669 CCGCGGAGGCCTTCATCT 61.855 66.667 24.07 0.00 35.02 2.90
3929 4229 2.279784 CGCGGAGGCCTTCATCTC 60.280 66.667 12.82 0.00 35.02 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.542472 TGCAATGAACACCAGCTGATG 59.458 47.619 17.39 12.07 0.00 3.07
65 66 2.677199 GTGTGTCGCAGAGAGAAATGA 58.323 47.619 0.00 0.00 36.95 2.57
73 74 0.454620 GGAGTACGTGTGTCGCAGAG 60.455 60.000 0.00 0.00 44.19 3.35
74 75 1.167781 TGGAGTACGTGTGTCGCAGA 61.168 55.000 0.00 0.00 44.19 4.26
76 77 0.315886 AATGGAGTACGTGTGTCGCA 59.684 50.000 0.00 0.00 44.19 5.10
92 93 4.379186 CCTTAGCAGAGCAACAGTTGAATG 60.379 45.833 17.99 12.04 0.00 2.67
102 103 6.570378 GCAACTATTTTTCCTTAGCAGAGCAA 60.570 38.462 0.00 0.00 0.00 3.91
161 162 7.535258 GTGCATTGTGAGACTAATTAACACTTG 59.465 37.037 0.00 0.00 33.41 3.16
162 163 7.228507 TGTGCATTGTGAGACTAATTAACACTT 59.771 33.333 0.00 0.00 33.41 3.16
192 195 0.656259 CTGCAGCGTGGATCATCTTG 59.344 55.000 0.00 0.00 0.00 3.02
193 196 0.538584 TCTGCAGCGTGGATCATCTT 59.461 50.000 9.47 0.00 0.00 2.40
214 217 4.801891 ACATTGTAAGTTGAGCAGCATTG 58.198 39.130 0.00 0.00 0.00 2.82
215 218 4.520111 TGACATTGTAAGTTGAGCAGCATT 59.480 37.500 0.00 0.00 0.00 3.56
216 219 4.074259 TGACATTGTAAGTTGAGCAGCAT 58.926 39.130 0.00 0.00 0.00 3.79
217 220 3.250762 GTGACATTGTAAGTTGAGCAGCA 59.749 43.478 0.00 0.00 0.00 4.41
218 221 3.365364 GGTGACATTGTAAGTTGAGCAGC 60.365 47.826 0.00 0.00 0.00 5.25
219 222 3.814842 TGGTGACATTGTAAGTTGAGCAG 59.185 43.478 0.00 0.00 33.40 4.24
220 223 3.563808 GTGGTGACATTGTAAGTTGAGCA 59.436 43.478 0.00 0.00 46.14 4.26
221 224 3.058224 GGTGGTGACATTGTAAGTTGAGC 60.058 47.826 0.00 0.00 46.14 4.26
222 225 3.502211 GGGTGGTGACATTGTAAGTTGAG 59.498 47.826 0.00 0.00 46.14 3.02
223 226 3.117851 TGGGTGGTGACATTGTAAGTTGA 60.118 43.478 0.00 0.00 46.14 3.18
224 227 3.004315 GTGGGTGGTGACATTGTAAGTTG 59.996 47.826 0.00 0.00 46.14 3.16
225 228 3.219281 GTGGGTGGTGACATTGTAAGTT 58.781 45.455 0.00 0.00 46.14 2.66
226 229 2.488347 GGTGGGTGGTGACATTGTAAGT 60.488 50.000 0.00 0.00 46.14 2.24
227 230 2.159382 GGTGGGTGGTGACATTGTAAG 58.841 52.381 0.00 0.00 46.14 2.34
228 231 1.777878 AGGTGGGTGGTGACATTGTAA 59.222 47.619 0.00 0.00 46.14 2.41
229 232 1.349688 GAGGTGGGTGGTGACATTGTA 59.650 52.381 0.00 0.00 46.14 2.41
230 233 0.110486 GAGGTGGGTGGTGACATTGT 59.890 55.000 0.00 0.00 46.14 2.71
231 234 0.609131 GGAGGTGGGTGGTGACATTG 60.609 60.000 0.00 0.00 46.14 2.82
232 235 0.772124 AGGAGGTGGGTGGTGACATT 60.772 55.000 0.00 0.00 46.14 2.71
233 236 1.151810 AGGAGGTGGGTGGTGACAT 60.152 57.895 0.00 0.00 46.14 3.06
234 237 2.146724 CAGGAGGTGGGTGGTGACA 61.147 63.158 0.00 0.00 38.70 3.58
235 238 2.750350 CAGGAGGTGGGTGGTGAC 59.250 66.667 0.00 0.00 0.00 3.67
236 239 3.249189 GCAGGAGGTGGGTGGTGA 61.249 66.667 0.00 0.00 0.00 4.02
457 465 4.124943 ATGGAGCAGCAGCCAGGG 62.125 66.667 12.05 0.00 43.56 4.45
520 535 1.661341 AATGAGATTCCTGCGTGCTC 58.339 50.000 0.00 0.00 0.00 4.26
557 572 4.044426 GTCCAGATTTGCAAAGTCAACAC 58.956 43.478 18.19 6.17 34.65 3.32
626 669 1.696832 GAGAAACGTCGATGGCAGCC 61.697 60.000 3.66 3.66 0.00 4.85
664 717 2.032681 AAGCTTCAGCCCGTCCAC 59.967 61.111 0.00 0.00 43.38 4.02
682 735 1.626356 TACCCATGGAGAGGCTGCAC 61.626 60.000 15.22 0.00 34.07 4.57
707 760 3.883744 AAGAAGTGACGCTGGCCGG 62.884 63.158 7.41 7.41 42.52 6.13
708 761 2.357517 AAGAAGTGACGCTGGCCG 60.358 61.111 0.00 0.00 44.21 6.13
709 762 2.035442 GGAAGAAGTGACGCTGGCC 61.035 63.158 0.00 0.00 0.00 5.36
712 765 1.738099 CGGGGAAGAAGTGACGCTG 60.738 63.158 0.00 0.00 0.00 5.18
713 766 2.657237 CGGGGAAGAAGTGACGCT 59.343 61.111 0.00 0.00 0.00 5.07
716 769 0.670854 GACTGCGGGGAAGAAGTGAC 60.671 60.000 0.00 0.00 28.04 3.67
717 770 1.118965 TGACTGCGGGGAAGAAGTGA 61.119 55.000 0.00 0.00 28.04 3.41
718 771 0.671781 CTGACTGCGGGGAAGAAGTG 60.672 60.000 0.00 0.00 28.04 3.16
719 772 1.122019 ACTGACTGCGGGGAAGAAGT 61.122 55.000 0.00 0.00 31.30 3.01
729 789 1.916651 CGAGAGAATTGACTGACTGCG 59.083 52.381 0.00 0.00 0.00 5.18
734 794 7.827701 ACTAATTACACGAGAGAATTGACTGA 58.172 34.615 0.00 0.00 0.00 3.41
839 902 1.726791 GCACATGACACCGAAGTACTG 59.273 52.381 0.00 0.00 0.00 2.74
876 939 3.389002 TGTGTGATGCAGGCTATACTGAT 59.611 43.478 0.00 0.00 40.97 2.90
877 940 2.765699 TGTGTGATGCAGGCTATACTGA 59.234 45.455 0.00 0.00 40.97 3.41
878 941 3.183793 TGTGTGATGCAGGCTATACTG 57.816 47.619 0.00 0.00 41.41 2.74
879 942 3.645212 AGATGTGTGATGCAGGCTATACT 59.355 43.478 0.00 0.00 0.00 2.12
880 943 3.744942 CAGATGTGTGATGCAGGCTATAC 59.255 47.826 0.00 0.00 0.00 1.47
881 944 3.804759 GCAGATGTGTGATGCAGGCTATA 60.805 47.826 0.00 0.00 39.75 1.31
888 951 0.393402 GGAGGCAGATGTGTGATGCA 60.393 55.000 0.00 0.00 41.78 3.96
907 970 4.021456 GGTTTTGGGAATGGTAGGACTTTG 60.021 45.833 0.00 0.00 0.00 2.77
914 977 2.456577 CCTGGGTTTTGGGAATGGTAG 58.543 52.381 0.00 0.00 0.00 3.18
974 1049 1.001706 GACCGTGCTCTATGCGATGTA 60.002 52.381 0.00 0.00 46.63 2.29
983 1070 0.108186 CATTGCAGGACCGTGCTCTA 60.108 55.000 14.53 2.75 44.32 2.43
1101 1188 2.359602 AGCAGAAGCAGCGCACAT 60.360 55.556 11.47 0.00 45.49 3.21
1113 1200 2.047844 GCGAGAACCAGCAGCAGA 60.048 61.111 0.00 0.00 0.00 4.26
1251 1341 7.158021 ACTAGAAGAAAACAGAAGACATGAGG 58.842 38.462 0.00 0.00 0.00 3.86
1274 1364 2.968574 AGAGGTGCATCCATATTCGACT 59.031 45.455 0.00 0.00 39.02 4.18
1275 1365 3.006323 AGAGAGGTGCATCCATATTCGAC 59.994 47.826 0.00 0.00 39.02 4.20
1277 1367 3.674528 AGAGAGGTGCATCCATATTCG 57.325 47.619 0.00 0.00 39.02 3.34
1278 1368 6.060788 AGAAAAGAGAGGTGCATCCATATTC 58.939 40.000 0.00 0.00 39.02 1.75
1279 1369 6.011122 AGAAAAGAGAGGTGCATCCATATT 57.989 37.500 0.00 0.00 39.02 1.28
1280 1370 5.643421 AGAAAAGAGAGGTGCATCCATAT 57.357 39.130 0.00 0.00 39.02 1.78
1282 1372 4.313020 AAGAAAAGAGAGGTGCATCCAT 57.687 40.909 0.00 0.00 39.02 3.41
1283 1373 3.795688 AAGAAAAGAGAGGTGCATCCA 57.204 42.857 0.00 0.00 39.02 3.41
1284 1374 4.331108 AGAAAGAAAAGAGAGGTGCATCC 58.669 43.478 0.00 0.00 0.00 3.51
1285 1375 6.169800 ACTAGAAAGAAAAGAGAGGTGCATC 58.830 40.000 0.00 0.00 0.00 3.91
1286 1376 6.120507 ACTAGAAAGAAAAGAGAGGTGCAT 57.879 37.500 0.00 0.00 0.00 3.96
1287 1377 5.542779 GACTAGAAAGAAAAGAGAGGTGCA 58.457 41.667 0.00 0.00 0.00 4.57
1288 1378 4.623595 CGACTAGAAAGAAAAGAGAGGTGC 59.376 45.833 0.00 0.00 0.00 5.01
1289 1379 6.015027 TCGACTAGAAAGAAAAGAGAGGTG 57.985 41.667 0.00 0.00 0.00 4.00
1290 1380 6.651975 TTCGACTAGAAAGAAAAGAGAGGT 57.348 37.500 0.00 0.00 35.61 3.85
1295 1545 9.534565 CATCCATATTCGACTAGAAAGAAAAGA 57.465 33.333 0.00 0.00 42.91 2.52
1307 1557 2.968574 AGAGGTGCATCCATATTCGACT 59.031 45.455 0.00 0.00 39.02 4.18
1414 1665 8.032952 TGCTGTAAATCAACTGATGTTTAGAG 57.967 34.615 0.00 0.45 33.76 2.43
1764 2033 1.139989 TGCTTCGAGTTCTTTCTGCG 58.860 50.000 0.00 0.00 0.00 5.18
1849 2118 1.936547 GATGCTTCTAGTGCTTTCCGG 59.063 52.381 0.00 0.00 0.00 5.14
1861 2130 2.828520 TCGTTCCTTGAGAGATGCTTCT 59.171 45.455 0.96 0.96 33.88 2.85
1868 2137 3.552273 CGGTTTTCTCGTTCCTTGAGAGA 60.552 47.826 0.00 0.00 42.97 3.10
1873 2142 0.941542 TGCGGTTTTCTCGTTCCTTG 59.058 50.000 0.00 0.00 0.00 3.61
1885 2154 1.431496 GCATTTGCTTGATGCGGTTT 58.569 45.000 0.00 0.00 46.63 3.27
1935 2204 1.899142 GAGACAGCTCCTGTTCCTTCT 59.101 52.381 0.00 0.00 45.44 2.85
2035 2304 0.034186 TCCGCTGCAGGATTTCCATT 60.034 50.000 17.12 0.00 38.89 3.16
2123 2392 1.203994 TGCCGAAGTGCTCTTACTACC 59.796 52.381 0.04 0.00 33.64 3.18
2331 2600 2.245096 GCAATTCATCAACTCGTGTGC 58.755 47.619 0.00 0.00 0.00 4.57
2337 2606 3.417690 GCTCCTGCAATTCATCAACTC 57.582 47.619 0.00 0.00 39.41 3.01
2397 2666 0.403271 AGACTTCTTGGCATGGCTGT 59.597 50.000 21.08 10.82 0.00 4.40
2405 2674 2.225255 GAGCAAGTTCAGACTTCTTGGC 59.775 50.000 11.35 0.00 44.14 4.52
2447 2716 2.031157 GGTTTTCAACATGACTGTCGGG 60.031 50.000 0.00 0.20 33.36 5.14
2461 2730 3.432890 GGTGCCCTGATTTTTGGTTTTCA 60.433 43.478 0.00 0.00 0.00 2.69
2506 2775 7.928167 TCAAGTAGCTTGTTATATCTGACATGG 59.072 37.037 8.48 0.00 41.66 3.66
2527 2796 5.221048 CGGTTTGATGTTTTCCTTCTCAAGT 60.221 40.000 0.00 0.00 0.00 3.16
2539 2808 3.639094 TGGTTTCATCCGGTTTGATGTTT 59.361 39.130 0.00 0.00 42.24 2.83
2551 2820 5.532779 ACTGTTCTTCTTCTTGGTTTCATCC 59.467 40.000 0.00 0.00 0.00 3.51
2630 2899 0.463620 TTTTCCAAGTGCCCAACAGC 59.536 50.000 0.00 0.00 0.00 4.40
2731 3003 2.331166 TCCAAGTGCCCAACAGTACTA 58.669 47.619 0.00 0.00 31.92 1.82
2810 3082 1.583495 TTCACATCAGCAGCAGCAGC 61.583 55.000 3.17 0.46 45.49 5.25
2814 3086 1.654954 GGGCTTCACATCAGCAGCAG 61.655 60.000 0.00 0.00 39.21 4.24
2997 3278 7.984617 GCATTTCTTCTGTTCTAGTCCTCTATT 59.015 37.037 0.00 0.00 0.00 1.73
3036 3317 6.564125 GCCTTCATTTCTCGATTGTATTACGG 60.564 42.308 0.00 0.00 0.00 4.02
3039 3320 7.047891 ACAGCCTTCATTTCTCGATTGTATTA 58.952 34.615 0.00 0.00 0.00 0.98
3175 3458 6.072673 GGGGCGGAATAATTACAATACTCAAG 60.073 42.308 0.00 0.00 0.00 3.02
3189 3472 2.025793 TGAAATCAGTGGGGCGGAATAA 60.026 45.455 0.00 0.00 0.00 1.40
3202 3486 8.024865 TCACAACATTCTTGCTAATGAAATCAG 58.975 33.333 12.10 0.00 38.84 2.90
3210 3495 3.763897 GGGGTCACAACATTCTTGCTAAT 59.236 43.478 0.00 0.00 0.00 1.73
3212 3497 2.790433 GGGGTCACAACATTCTTGCTA 58.210 47.619 0.00 0.00 0.00 3.49
3322 3611 3.506844 TGCACTGCATCTTTATTCAAGCA 59.493 39.130 0.00 0.00 31.71 3.91
3350 3643 8.744652 ACTATGTTCACCTATATGCATCTACTC 58.255 37.037 0.19 0.00 0.00 2.59
3356 3649 9.259832 TGATAGACTATGTTCACCTATATGCAT 57.740 33.333 3.79 3.79 0.00 3.96
3361 3654 8.990163 TGTGTGATAGACTATGTTCACCTATA 57.010 34.615 10.72 0.00 38.12 1.31
3375 3668 6.568869 AGTTCTGAATAGCTGTGTGATAGAC 58.431 40.000 0.00 0.00 0.00 2.59
3377 3670 6.696583 CAGAGTTCTGAATAGCTGTGTGATAG 59.303 42.308 2.97 0.00 46.59 2.08
3378 3671 6.153510 ACAGAGTTCTGAATAGCTGTGTGATA 59.846 38.462 15.63 0.00 46.59 2.15
3381 3674 4.564041 ACAGAGTTCTGAATAGCTGTGTG 58.436 43.478 15.63 2.33 46.59 3.82
3382 3675 4.617067 CGACAGAGTTCTGAATAGCTGTGT 60.617 45.833 19.99 14.68 46.59 3.72
3401 3694 7.095229 GCAGTTATTTGATGCTATATTCCGACA 60.095 37.037 0.00 0.00 37.00 4.35
3403 3696 6.934083 TGCAGTTATTTGATGCTATATTCCGA 59.066 34.615 0.00 0.00 40.62 4.55
3482 3782 4.919754 CAGAGGTACACGGTTAGTTTGTAC 59.080 45.833 0.00 3.07 43.23 2.90
3483 3783 4.559300 GCAGAGGTACACGGTTAGTTTGTA 60.559 45.833 0.00 0.00 0.00 2.41
3484 3784 3.801293 GCAGAGGTACACGGTTAGTTTGT 60.801 47.826 0.00 0.00 0.00 2.83
3485 3785 2.735134 GCAGAGGTACACGGTTAGTTTG 59.265 50.000 0.00 0.00 0.00 2.93
3486 3786 2.366266 TGCAGAGGTACACGGTTAGTTT 59.634 45.455 0.00 0.00 0.00 2.66
3487 3787 1.965643 TGCAGAGGTACACGGTTAGTT 59.034 47.619 0.00 0.00 0.00 2.24
3488 3788 1.544691 CTGCAGAGGTACACGGTTAGT 59.455 52.381 8.42 0.00 0.00 2.24
3489 3789 1.736032 GCTGCAGAGGTACACGGTTAG 60.736 57.143 20.43 0.00 0.00 2.34
3490 3790 0.245539 GCTGCAGAGGTACACGGTTA 59.754 55.000 20.43 0.00 0.00 2.85
3491 3791 1.004918 GCTGCAGAGGTACACGGTT 60.005 57.895 20.43 0.00 0.00 4.44
3492 3792 1.472662 AAGCTGCAGAGGTACACGGT 61.473 55.000 20.43 0.00 0.00 4.83
3493 3793 1.016130 CAAGCTGCAGAGGTACACGG 61.016 60.000 20.43 0.00 0.00 4.94
3494 3794 1.016130 CCAAGCTGCAGAGGTACACG 61.016 60.000 20.43 0.00 0.00 4.49
3495 3795 0.321671 TCCAAGCTGCAGAGGTACAC 59.678 55.000 20.43 0.00 0.00 2.90
3496 3796 1.208052 GATCCAAGCTGCAGAGGTACA 59.792 52.381 20.43 0.26 0.00 2.90
3497 3797 1.804372 CGATCCAAGCTGCAGAGGTAC 60.804 57.143 20.43 12.16 0.00 3.34
3498 3798 0.461548 CGATCCAAGCTGCAGAGGTA 59.538 55.000 20.43 6.42 0.00 3.08
3499 3799 1.220206 CGATCCAAGCTGCAGAGGT 59.780 57.895 20.43 6.50 0.00 3.85
3500 3800 2.178890 GCGATCCAAGCTGCAGAGG 61.179 63.158 20.43 15.68 0.00 3.69
3501 3801 2.523507 CGCGATCCAAGCTGCAGAG 61.524 63.158 20.43 6.06 0.00 3.35
3502 3802 1.944234 TACGCGATCCAAGCTGCAGA 61.944 55.000 20.43 0.00 0.00 4.26
3503 3803 0.877649 ATACGCGATCCAAGCTGCAG 60.878 55.000 15.93 10.11 0.00 4.41
3504 3804 0.875908 GATACGCGATCCAAGCTGCA 60.876 55.000 15.93 0.00 0.00 4.41
3505 3805 1.856012 GATACGCGATCCAAGCTGC 59.144 57.895 15.93 0.00 0.00 5.25
3513 3813 0.453615 CGCTGAGAGGATACGCGATC 60.454 60.000 15.93 11.59 45.99 3.69
3514 3814 1.576920 CGCTGAGAGGATACGCGAT 59.423 57.895 15.93 0.96 45.99 4.58
3515 3815 2.543802 CCGCTGAGAGGATACGCGA 61.544 63.158 15.93 0.00 45.99 5.87
3516 3816 2.050895 CCGCTGAGAGGATACGCG 60.051 66.667 3.53 3.53 43.56 6.01
3517 3817 1.299468 CACCGCTGAGAGGATACGC 60.299 63.158 9.85 0.00 46.39 4.42
3518 3818 1.299468 GCACCGCTGAGAGGATACG 60.299 63.158 9.85 0.00 46.39 3.06
3519 3819 0.528684 GTGCACCGCTGAGAGGATAC 60.529 60.000 9.85 1.00 0.00 2.24
3520 3820 1.816537 GTGCACCGCTGAGAGGATA 59.183 57.895 9.85 0.00 0.00 2.59
3521 3821 2.581354 GTGCACCGCTGAGAGGAT 59.419 61.111 9.85 0.00 0.00 3.24
3522 3822 4.056125 CGTGCACCGCTGAGAGGA 62.056 66.667 9.85 0.00 0.00 3.71
3554 3854 1.082366 GCCTTTACGTGCAACCGTG 60.082 57.895 12.17 0.00 41.92 4.94
3555 3855 0.887387 ATGCCTTTACGTGCAACCGT 60.887 50.000 7.55 7.55 41.50 4.83
3556 3856 0.179200 GATGCCTTTACGTGCAACCG 60.179 55.000 0.00 0.00 41.50 4.44
3557 3857 1.130561 GAGATGCCTTTACGTGCAACC 59.869 52.381 0.00 0.00 41.50 3.77
3558 3858 1.130561 GGAGATGCCTTTACGTGCAAC 59.869 52.381 0.00 0.00 41.50 4.17
3559 3859 1.271108 TGGAGATGCCTTTACGTGCAA 60.271 47.619 0.00 0.00 41.50 4.08
3560 3860 0.323302 TGGAGATGCCTTTACGTGCA 59.677 50.000 0.00 0.00 42.52 4.57
3561 3861 1.009829 CTGGAGATGCCTTTACGTGC 58.990 55.000 0.00 0.00 37.63 5.34
3562 3862 2.002586 CACTGGAGATGCCTTTACGTG 58.997 52.381 0.00 0.00 37.63 4.49
3563 3863 1.066143 CCACTGGAGATGCCTTTACGT 60.066 52.381 0.00 0.00 37.63 3.57
3564 3864 1.656652 CCACTGGAGATGCCTTTACG 58.343 55.000 0.00 0.00 37.63 3.18
3565 3865 1.340017 TGCCACTGGAGATGCCTTTAC 60.340 52.381 0.00 0.00 37.63 2.01
3566 3866 0.991146 TGCCACTGGAGATGCCTTTA 59.009 50.000 0.00 0.00 37.63 1.85
3567 3867 0.323178 CTGCCACTGGAGATGCCTTT 60.323 55.000 0.00 0.00 37.63 3.11
3568 3868 1.203441 TCTGCCACTGGAGATGCCTT 61.203 55.000 0.00 0.00 37.63 4.35
3569 3869 1.203441 TTCTGCCACTGGAGATGCCT 61.203 55.000 0.00 0.00 37.63 4.75
3570 3870 1.028868 GTTCTGCCACTGGAGATGCC 61.029 60.000 0.00 0.00 37.10 4.40
3571 3871 1.028868 GGTTCTGCCACTGGAGATGC 61.029 60.000 0.00 0.00 37.17 3.91
3572 3872 0.393537 GGGTTCTGCCACTGGAGATG 60.394 60.000 0.00 0.00 39.65 2.90
3573 3873 1.566298 GGGGTTCTGCCACTGGAGAT 61.566 60.000 0.00 0.00 37.78 2.75
3574 3874 2.224159 GGGGTTCTGCCACTGGAGA 61.224 63.158 0.00 0.00 37.78 3.71
3575 3875 2.352805 GGGGTTCTGCCACTGGAG 59.647 66.667 0.00 0.00 37.78 3.86
3576 3876 3.256960 GGGGGTTCTGCCACTGGA 61.257 66.667 0.00 0.00 41.58 3.86
3590 3890 0.395173 CATTACGGGGAAAGTGGGGG 60.395 60.000 0.00 0.00 0.00 5.40
3591 3891 0.330267 ACATTACGGGGAAAGTGGGG 59.670 55.000 0.00 0.00 0.00 4.96
3592 3892 1.746470 GACATTACGGGGAAAGTGGG 58.254 55.000 0.00 0.00 0.00 4.61
3593 3893 1.365699 CGACATTACGGGGAAAGTGG 58.634 55.000 0.00 0.00 0.00 4.00
3603 3903 1.065273 CTCCCGGACCGACATTACG 59.935 63.158 17.49 0.00 0.00 3.18
3604 3904 1.038280 ATCTCCCGGACCGACATTAC 58.962 55.000 17.49 0.00 0.00 1.89
3605 3905 1.684983 GAATCTCCCGGACCGACATTA 59.315 52.381 17.49 0.00 0.00 1.90
3606 3906 0.464452 GAATCTCCCGGACCGACATT 59.536 55.000 17.49 7.34 0.00 2.71
3607 3907 1.400530 GGAATCTCCCGGACCGACAT 61.401 60.000 17.49 0.00 0.00 3.06
3608 3908 2.056223 GGAATCTCCCGGACCGACA 61.056 63.158 17.49 0.00 0.00 4.35
3609 3909 2.813200 GGAATCTCCCGGACCGAC 59.187 66.667 17.49 0.00 0.00 4.79
3610 3910 2.831742 CGGAATCTCCCGGACCGA 60.832 66.667 17.49 0.00 45.43 4.69
3617 3917 2.190578 CACTGCCCGGAATCTCCC 59.809 66.667 0.73 0.00 31.13 4.30
3618 3918 1.153349 GACACTGCCCGGAATCTCC 60.153 63.158 0.73 0.00 0.00 3.71
3619 3919 0.179000 ATGACACTGCCCGGAATCTC 59.821 55.000 0.73 0.00 0.00 2.75
3620 3920 1.139058 GTATGACACTGCCCGGAATCT 59.861 52.381 0.73 0.00 0.00 2.40
3621 3921 1.583054 GTATGACACTGCCCGGAATC 58.417 55.000 0.73 0.00 0.00 2.52
3622 3922 0.180406 GGTATGACACTGCCCGGAAT 59.820 55.000 0.73 0.00 0.00 3.01
3623 3923 0.907704 AGGTATGACACTGCCCGGAA 60.908 55.000 0.73 0.00 0.00 4.30
3624 3924 1.305802 AGGTATGACACTGCCCGGA 60.306 57.895 0.73 0.00 0.00 5.14
3625 3925 1.144057 GAGGTATGACACTGCCCGG 59.856 63.158 0.00 0.00 0.00 5.73
3626 3926 0.249120 TTGAGGTATGACACTGCCCG 59.751 55.000 0.00 0.00 0.00 6.13
3627 3927 2.084546 GTTTGAGGTATGACACTGCCC 58.915 52.381 0.00 0.00 0.00 5.36
3628 3928 1.732259 CGTTTGAGGTATGACACTGCC 59.268 52.381 0.00 0.00 0.00 4.85
3629 3929 2.412089 GACGTTTGAGGTATGACACTGC 59.588 50.000 0.00 0.00 0.00 4.40
3630 3930 3.675225 CAGACGTTTGAGGTATGACACTG 59.325 47.826 0.00 0.00 27.67 3.66
3631 3931 3.861131 GCAGACGTTTGAGGTATGACACT 60.861 47.826 10.75 0.00 27.67 3.55
3632 3932 2.412089 GCAGACGTTTGAGGTATGACAC 59.588 50.000 10.75 0.00 27.67 3.67
3633 3933 2.036604 TGCAGACGTTTGAGGTATGACA 59.963 45.455 10.75 0.00 27.67 3.58
3634 3934 2.683968 TGCAGACGTTTGAGGTATGAC 58.316 47.619 10.75 0.00 27.67 3.06
3635 3935 3.394674 TTGCAGACGTTTGAGGTATGA 57.605 42.857 10.75 0.00 27.67 2.15
3636 3936 4.481930 TTTTGCAGACGTTTGAGGTATG 57.518 40.909 10.75 0.00 0.00 2.39
3637 3937 4.819630 TCTTTTTGCAGACGTTTGAGGTAT 59.180 37.500 10.75 0.00 0.00 2.73
3638 3938 4.193090 TCTTTTTGCAGACGTTTGAGGTA 58.807 39.130 10.75 0.00 0.00 3.08
3639 3939 3.013921 TCTTTTTGCAGACGTTTGAGGT 58.986 40.909 10.75 0.00 0.00 3.85
3640 3940 3.312421 TCTCTTTTTGCAGACGTTTGAGG 59.688 43.478 10.75 0.00 0.00 3.86
3641 3941 4.536364 TCTCTTTTTGCAGACGTTTGAG 57.464 40.909 10.75 0.00 0.00 3.02
3642 3942 4.955925 TTCTCTTTTTGCAGACGTTTGA 57.044 36.364 10.75 0.00 0.00 2.69
3643 3943 5.799936 TCTTTTCTCTTTTTGCAGACGTTTG 59.200 36.000 0.86 0.86 0.00 2.93
3644 3944 5.949735 TCTTTTCTCTTTTTGCAGACGTTT 58.050 33.333 0.00 0.00 0.00 3.60
3645 3945 5.560966 TCTTTTCTCTTTTTGCAGACGTT 57.439 34.783 0.00 0.00 0.00 3.99
3646 3946 5.560966 TTCTTTTCTCTTTTTGCAGACGT 57.439 34.783 0.00 0.00 0.00 4.34
3647 3947 6.869421 TTTTCTTTTCTCTTTTTGCAGACG 57.131 33.333 0.00 0.00 0.00 4.18
3669 3969 9.705290 AACTCTGTTGTTGACAAAGTTATTTTT 57.295 25.926 9.50 0.00 37.93 1.94
3670 3970 9.353999 GAACTCTGTTGTTGACAAAGTTATTTT 57.646 29.630 10.68 0.00 35.67 1.82
3671 3971 7.973944 GGAACTCTGTTGTTGACAAAGTTATTT 59.026 33.333 10.68 0.00 35.67 1.40
3672 3972 7.416326 GGGAACTCTGTTGTTGACAAAGTTATT 60.416 37.037 10.68 0.21 35.67 1.40
3673 3973 6.039382 GGGAACTCTGTTGTTGACAAAGTTAT 59.961 38.462 10.68 0.00 35.67 1.89
3674 3974 5.355910 GGGAACTCTGTTGTTGACAAAGTTA 59.644 40.000 10.68 0.00 35.67 2.24
3675 3975 4.157840 GGGAACTCTGTTGTTGACAAAGTT 59.842 41.667 10.55 10.55 37.22 2.66
3676 3976 3.694566 GGGAACTCTGTTGTTGACAAAGT 59.305 43.478 0.00 0.00 37.93 2.66
3677 3977 3.066760 GGGGAACTCTGTTGTTGACAAAG 59.933 47.826 0.00 0.00 37.93 2.77
3678 3978 3.020984 GGGGAACTCTGTTGTTGACAAA 58.979 45.455 0.00 0.00 37.93 2.83
3679 3979 2.025793 TGGGGAACTCTGTTGTTGACAA 60.026 45.455 0.00 0.00 37.93 3.18
3680 3980 1.562008 TGGGGAACTCTGTTGTTGACA 59.438 47.619 0.00 0.00 36.65 3.58
3681 3981 2.341846 TGGGGAACTCTGTTGTTGAC 57.658 50.000 0.00 0.00 0.00 3.18
3682 3982 3.020984 GTTTGGGGAACTCTGTTGTTGA 58.979 45.455 0.00 0.00 35.31 3.18
3683 3983 3.023832 AGTTTGGGGAACTCTGTTGTTG 58.976 45.455 0.00 0.00 45.40 3.33
3684 3984 3.382083 AGTTTGGGGAACTCTGTTGTT 57.618 42.857 0.00 0.00 45.40 2.83
3685 3985 4.724279 ATAGTTTGGGGAACTCTGTTGT 57.276 40.909 0.00 0.00 45.40 3.32
3686 3986 4.154195 CGAATAGTTTGGGGAACTCTGTTG 59.846 45.833 0.00 0.00 45.40 3.33
3687 3987 4.324267 CGAATAGTTTGGGGAACTCTGTT 58.676 43.478 0.00 0.00 45.40 3.16
3688 3988 3.868754 GCGAATAGTTTGGGGAACTCTGT 60.869 47.826 0.00 0.00 45.40 3.41
3689 3989 2.678336 GCGAATAGTTTGGGGAACTCTG 59.322 50.000 0.00 0.00 45.40 3.35
3690 3990 2.677037 CGCGAATAGTTTGGGGAACTCT 60.677 50.000 0.00 0.00 45.40 3.24
3691 3991 1.664151 CGCGAATAGTTTGGGGAACTC 59.336 52.381 0.00 0.00 45.40 3.01
3693 3993 1.664151 CTCGCGAATAGTTTGGGGAAC 59.336 52.381 11.33 0.00 38.58 3.62
3694 3994 1.406341 CCTCGCGAATAGTTTGGGGAA 60.406 52.381 11.33 0.00 33.32 3.97
3695 3995 0.177141 CCTCGCGAATAGTTTGGGGA 59.823 55.000 11.33 0.00 32.84 4.81
3696 3996 0.814010 CCCTCGCGAATAGTTTGGGG 60.814 60.000 17.26 14.21 0.00 4.96
3697 3997 1.436983 GCCCTCGCGAATAGTTTGGG 61.437 60.000 19.93 19.93 36.41 4.12
3698 3998 2.014594 GCCCTCGCGAATAGTTTGG 58.985 57.895 11.33 5.71 0.00 3.28
3711 4011 4.980805 TGTTGTCGCCACGCCCTC 62.981 66.667 0.00 0.00 0.00 4.30
3714 4014 4.307908 GTGTGTTGTCGCCACGCC 62.308 66.667 0.00 0.00 37.36 5.68
3715 4015 4.643385 CGTGTGTTGTCGCCACGC 62.643 66.667 0.00 0.00 39.38 5.34
3716 4016 3.205260 GACGTGTGTTGTCGCCACG 62.205 63.158 9.57 9.57 43.79 4.94
3717 4017 2.624264 GACGTGTGTTGTCGCCAC 59.376 61.111 0.00 0.00 0.00 5.01
3722 4022 0.526954 ACCTGTCGACGTGTGTTGTC 60.527 55.000 11.62 0.00 0.00 3.18
3723 4023 0.108520 AACCTGTCGACGTGTGTTGT 60.109 50.000 11.62 0.00 0.00 3.32
3724 4024 1.842720 TAACCTGTCGACGTGTGTTG 58.157 50.000 11.62 0.00 0.00 3.33
3725 4025 2.806608 ATAACCTGTCGACGTGTGTT 57.193 45.000 11.62 12.92 0.00 3.32
3726 4026 2.669364 GAATAACCTGTCGACGTGTGT 58.331 47.619 11.62 2.16 0.00 3.72
3727 4027 1.647213 CGAATAACCTGTCGACGTGTG 59.353 52.381 11.62 1.49 39.64 3.82
3728 4028 1.973138 CGAATAACCTGTCGACGTGT 58.027 50.000 11.62 7.53 39.64 4.49
3729 4029 0.638746 GCGAATAACCTGTCGACGTG 59.361 55.000 11.62 6.83 39.64 4.49
3730 4030 0.241749 TGCGAATAACCTGTCGACGT 59.758 50.000 11.62 0.00 39.64 4.34
3731 4031 0.638746 GTGCGAATAACCTGTCGACG 59.361 55.000 11.62 5.76 39.64 5.12
3732 4032 1.705256 TGTGCGAATAACCTGTCGAC 58.295 50.000 9.11 9.11 39.64 4.20
3733 4033 2.665649 ATGTGCGAATAACCTGTCGA 57.334 45.000 0.00 0.00 39.64 4.20
3734 4034 3.416277 CAAATGTGCGAATAACCTGTCG 58.584 45.455 0.00 0.00 40.24 4.35
3735 4035 3.171277 GCAAATGTGCGAATAACCTGTC 58.829 45.455 0.00 0.00 41.93 3.51
3736 4036 3.216147 GCAAATGTGCGAATAACCTGT 57.784 42.857 0.00 0.00 41.93 4.00
3755 4055 1.199789 TGTTCGATGAAATGCACTGGC 59.800 47.619 0.00 0.00 41.68 4.85
3756 4056 2.159476 CCTGTTCGATGAAATGCACTGG 60.159 50.000 0.00 0.00 0.00 4.00
3757 4057 2.485426 ACCTGTTCGATGAAATGCACTG 59.515 45.455 0.00 0.00 0.00 3.66
3758 4058 2.783135 ACCTGTTCGATGAAATGCACT 58.217 42.857 0.00 0.00 0.00 4.40
3759 4059 3.236816 CAACCTGTTCGATGAAATGCAC 58.763 45.455 0.00 0.00 0.00 4.57
3760 4060 2.228582 CCAACCTGTTCGATGAAATGCA 59.771 45.455 0.00 0.00 0.00 3.96
3761 4061 2.415893 CCCAACCTGTTCGATGAAATGC 60.416 50.000 0.00 0.00 0.00 3.56
3762 4062 2.819608 ACCCAACCTGTTCGATGAAATG 59.180 45.455 0.00 0.00 0.00 2.32
3763 4063 2.819608 CACCCAACCTGTTCGATGAAAT 59.180 45.455 0.00 0.00 0.00 2.17
3764 4064 2.226330 CACCCAACCTGTTCGATGAAA 58.774 47.619 0.00 0.00 0.00 2.69
3765 4065 1.890876 CACCCAACCTGTTCGATGAA 58.109 50.000 0.00 0.00 0.00 2.57
3766 4066 0.605319 GCACCCAACCTGTTCGATGA 60.605 55.000 0.00 0.00 0.00 2.92
3767 4067 0.888736 TGCACCCAACCTGTTCGATG 60.889 55.000 0.00 0.00 0.00 3.84
3768 4068 0.889186 GTGCACCCAACCTGTTCGAT 60.889 55.000 5.22 0.00 0.00 3.59
3769 4069 1.525077 GTGCACCCAACCTGTTCGA 60.525 57.895 5.22 0.00 0.00 3.71
3770 4070 1.525995 AGTGCACCCAACCTGTTCG 60.526 57.895 14.63 0.00 0.00 3.95
3771 4071 2.032981 CAGTGCACCCAACCTGTTC 58.967 57.895 14.63 0.00 0.00 3.18
3772 4072 2.127232 GCAGTGCACCCAACCTGTT 61.127 57.895 14.63 0.00 0.00 3.16
3773 4073 2.519302 GCAGTGCACCCAACCTGT 60.519 61.111 14.63 0.00 0.00 4.00
3774 4074 2.203394 AGCAGTGCACCCAACCTG 60.203 61.111 19.20 5.08 0.00 4.00
3775 4075 2.203394 CAGCAGTGCACCCAACCT 60.203 61.111 19.20 0.00 0.00 3.50
3776 4076 2.519302 ACAGCAGTGCACCCAACC 60.519 61.111 19.20 0.00 0.00 3.77
3777 4077 2.723746 CACAGCAGTGCACCCAAC 59.276 61.111 19.20 0.03 39.21 3.77
3778 4078 2.519063 CCACAGCAGTGCACCCAA 60.519 61.111 19.20 0.00 44.53 4.12
3779 4079 3.807839 ACCACAGCAGTGCACCCA 61.808 61.111 19.20 0.00 44.53 4.51
3780 4080 3.289834 CACCACAGCAGTGCACCC 61.290 66.667 19.20 4.97 44.53 4.61
3781 4081 3.289834 CCACCACAGCAGTGCACC 61.290 66.667 19.20 0.00 44.53 5.01
3782 4082 2.203195 TCCACCACAGCAGTGCAC 60.203 61.111 19.20 9.40 44.53 4.57
3783 4083 2.111669 CTCCACCACAGCAGTGCA 59.888 61.111 19.20 0.00 44.53 4.57
3784 4084 2.670934 CCTCCACCACAGCAGTGC 60.671 66.667 7.13 7.13 44.53 4.40
3785 4085 2.670934 GCCTCCACCACAGCAGTG 60.671 66.667 1.56 1.56 45.47 3.66
3786 4086 3.958860 GGCCTCCACCACAGCAGT 61.959 66.667 0.00 0.00 0.00 4.40
3790 4090 2.959484 ATGTCGGCCTCCACCACAG 61.959 63.158 0.00 0.00 0.00 3.66
3791 4091 2.927856 ATGTCGGCCTCCACCACA 60.928 61.111 0.00 0.00 0.00 4.17
3792 4092 2.436646 CATGTCGGCCTCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
3793 4093 2.927856 ACATGTCGGCCTCCACCA 60.928 61.111 0.00 0.00 0.00 4.17
3794 4094 2.436646 CACATGTCGGCCTCCACC 60.437 66.667 0.00 0.00 0.00 4.61
3795 4095 1.302511 AACACATGTCGGCCTCCAC 60.303 57.895 0.00 0.00 0.00 4.02
3796 4096 1.302431 CAACACATGTCGGCCTCCA 60.302 57.895 0.00 0.00 0.00 3.86
3797 4097 1.302511 ACAACACATGTCGGCCTCC 60.303 57.895 0.00 0.00 37.96 4.30
3798 4098 4.379174 ACAACACATGTCGGCCTC 57.621 55.556 0.00 0.00 37.96 4.70
3806 4106 2.127270 GCGTGGCGACAACACATG 60.127 61.111 0.00 0.00 46.06 3.21
3807 4107 3.353836 GGCGTGGCGACAACACAT 61.354 61.111 0.00 0.00 46.06 3.21
3810 4110 4.980805 GAGGGCGTGGCGACAACA 62.981 66.667 0.00 0.00 46.06 3.33
3825 4125 3.068691 TCAAGTCCCCCTCGCGAG 61.069 66.667 29.06 29.06 0.00 5.03
3826 4126 3.068691 CTCAAGTCCCCCTCGCGA 61.069 66.667 9.26 9.26 0.00 5.87
3827 4127 4.148825 CCTCAAGTCCCCCTCGCG 62.149 72.222 0.00 0.00 0.00 5.87
3828 4128 4.475135 GCCTCAAGTCCCCCTCGC 62.475 72.222 0.00 0.00 0.00 5.03
3829 4129 4.148825 CGCCTCAAGTCCCCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
3830 4130 4.475135 GCGCCTCAAGTCCCCCTC 62.475 72.222 0.00 0.00 0.00 4.30
3832 4132 4.785453 CAGCGCCTCAAGTCCCCC 62.785 72.222 2.29 0.00 0.00 5.40
3833 4133 3.959991 GACAGCGCCTCAAGTCCCC 62.960 68.421 2.29 0.00 0.00 4.81
3834 4134 2.435059 GACAGCGCCTCAAGTCCC 60.435 66.667 2.29 0.00 0.00 4.46
3835 4135 2.435059 GGACAGCGCCTCAAGTCC 60.435 66.667 2.29 10.75 43.18 3.85
3836 4136 2.659610 AGGACAGCGCCTCAAGTC 59.340 61.111 2.29 4.84 30.76 3.01
3848 4148 4.100084 CGGCCATGCTGGAGGACA 62.100 66.667 2.24 0.00 40.96 4.02
3885 4185 4.803426 CAGCGACGAGGGCACTCC 62.803 72.222 11.21 0.00 40.77 3.85
3891 4191 4.457496 ACCATGCAGCGACGAGGG 62.457 66.667 0.00 0.00 0.00 4.30
3892 4192 3.190849 CACCATGCAGCGACGAGG 61.191 66.667 0.00 0.00 0.00 4.63
3893 4193 3.190849 CCACCATGCAGCGACGAG 61.191 66.667 0.00 0.00 0.00 4.18
3911 4211 3.798954 GAGATGAAGGCCTCCGCGG 62.799 68.421 22.12 22.12 35.02 6.46
3912 4212 2.279784 GAGATGAAGGCCTCCGCG 60.280 66.667 5.23 0.00 35.02 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.