Multiple sequence alignment - TraesCS3A01G510900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G510900 chr3A 100.000 3212 0 0 1 3212 730657957 730654746 0.000000e+00 5932.0
1 TraesCS3A01G510900 chr3A 86.830 1511 124 50 840 2312 730117335 730115862 0.000000e+00 1618.0
2 TraesCS3A01G510900 chr3A 94.397 589 28 2 1 589 696704505 696705088 0.000000e+00 900.0
3 TraesCS3A01G510900 chr3A 90.576 191 13 3 2840 3030 57496436 57496621 6.880000e-62 248.0
4 TraesCS3A01G510900 chr3A 98.889 90 1 0 2840 2929 727250999 727251088 9.220000e-36 161.0
5 TraesCS3A01G510900 chr3D 91.875 1637 56 24 783 2409 600821136 600819567 0.000000e+00 2215.0
6 TraesCS3A01G510900 chr3D 87.908 1472 120 40 874 2312 600632010 600633456 0.000000e+00 1679.0
7 TraesCS3A01G510900 chr3D 94.534 311 17 0 2529 2839 269962977 269962667 6.230000e-132 481.0
8 TraesCS3A01G510900 chr3D 95.109 184 9 0 3029 3212 269962682 269962499 1.130000e-74 291.0
9 TraesCS3A01G510900 chr3D 96.907 97 3 0 589 685 600821230 600821134 2.560000e-36 163.0
10 TraesCS3A01G510900 chr3D 89.062 64 7 0 1724 1787 339306434 339306497 2.660000e-11 80.5
11 TraesCS3A01G510900 chr3D 92.857 42 2 1 2531 2571 211938716 211938675 3.460000e-05 60.2
12 TraesCS3A01G510900 chr3B 92.704 1535 71 18 1001 2533 808043798 808042303 0.000000e+00 2176.0
13 TraesCS3A01G510900 chr3B 87.608 1501 115 42 850 2312 807975627 807977094 0.000000e+00 1676.0
14 TraesCS3A01G510900 chr3B 94.375 160 9 0 589 748 808046424 808046265 2.470000e-61 246.0
15 TraesCS3A01G510900 chr3B 94.737 114 4 2 2919 3030 829383959 829383846 3.290000e-40 176.0
16 TraesCS3A01G510900 chr3B 84.456 193 11 8 745 929 808044775 808044594 4.260000e-39 172.0
17 TraesCS3A01G510900 chr3B 95.876 97 4 0 2833 2929 536901307 536901211 1.190000e-34 158.0
18 TraesCS3A01G510900 chr3B 89.062 64 7 0 1724 1787 437914214 437914277 2.660000e-11 80.5
19 TraesCS3A01G510900 chr3B 100.000 29 0 0 931 959 808043838 808043810 2.000000e-03 54.7
20 TraesCS3A01G510900 chr5A 95.593 590 24 2 3 592 585087281 585086694 0.000000e+00 944.0
21 TraesCS3A01G510900 chr5A 94.058 589 29 2 1 589 493027350 493027932 0.000000e+00 889.0
22 TraesCS3A01G510900 chr5A 93.603 594 36 2 1 594 559459434 559460025 0.000000e+00 885.0
23 TraesCS3A01G510900 chr5A 95.876 97 4 0 2833 2929 139481502 139481406 1.190000e-34 158.0
24 TraesCS3A01G510900 chr5A 90.435 115 8 3 2818 2929 535572056 535572170 7.180000e-32 148.0
25 TraesCS3A01G510900 chr7A 93.548 589 33 2 1 589 87163553 87164136 0.000000e+00 872.0
26 TraesCS3A01G510900 chr7A 92.941 595 35 5 1 592 648738375 648737785 0.000000e+00 859.0
27 TraesCS3A01G510900 chr7A 92.670 191 7 1 3029 3212 700604108 700603918 5.280000e-68 268.0
28 TraesCS3A01G510900 chr7A 86.266 233 12 5 2608 2839 700604306 700604093 5.360000e-58 235.0
29 TraesCS3A01G510900 chr7A 98.113 106 2 0 2927 3032 4784864 4784759 5.470000e-43 185.0
30 TraesCS3A01G510900 chr7A 95.455 88 4 0 2527 2614 700604830 700604743 1.200000e-29 141.0
31 TraesCS3A01G510900 chr7A 83.969 131 21 0 3029 3159 217679156 217679286 3.360000e-25 126.0
32 TraesCS3A01G510900 chr7A 95.349 43 1 1 2521 2563 577495043 577495002 2.070000e-07 67.6
33 TraesCS3A01G510900 chr1A 93.537 588 30 3 4 591 257876731 257876152 0.000000e+00 869.0
34 TraesCS3A01G510900 chr1A 93.401 591 31 4 1 591 545761277 545761859 0.000000e+00 869.0
35 TraesCS3A01G510900 chr1A 89.637 193 16 4 2839 3028 575180309 575180118 3.200000e-60 243.0
36 TraesCS3A01G510900 chr1A 81.771 192 32 3 2839 3028 579368704 579368514 1.190000e-34 158.0
37 TraesCS3A01G510900 chr1A 86.364 132 16 1 3029 3158 98518383 98518252 3.340000e-30 143.0
38 TraesCS3A01G510900 chr4A 93.401 591 28 5 1 591 152771499 152772078 0.000000e+00 865.0
39 TraesCS3A01G510900 chr7D 91.379 232 18 2 2608 2839 554150962 554151191 1.860000e-82 316.0
40 TraesCS3A01G510900 chr7D 79.070 387 69 9 1250 1630 37234993 37234613 4.110000e-64 255.0
41 TraesCS3A01G510900 chr7D 94.737 114 5 1 2927 3040 629631071 629630959 3.290000e-40 176.0
42 TraesCS3A01G510900 chr7D 94.118 85 5 0 2527 2611 554150435 554150519 2.600000e-26 130.0
43 TraesCS3A01G510900 chr6B 92.627 217 16 0 2623 2839 682359781 682359997 2.410000e-81 313.0
44 TraesCS3A01G510900 chr6B 92.935 184 13 0 3029 3212 682359982 682360165 5.280000e-68 268.0
45 TraesCS3A01G510900 chr6B 89.529 191 13 4 2842 3026 107820956 107821145 5.360000e-58 235.0
46 TraesCS3A01G510900 chr6B 84.940 166 23 1 2368 2531 3838964 3838799 1.980000e-37 167.0
47 TraesCS3A01G510900 chr6B 84.940 166 23 1 2368 2531 4374534 4374699 1.980000e-37 167.0
48 TraesCS3A01G510900 chrUn 72.584 952 222 33 1250 2182 90726837 90725906 3.160000e-70 276.0
49 TraesCS3A01G510900 chrUn 72.584 952 222 33 1250 2182 90939382 90938451 3.160000e-70 276.0
50 TraesCS3A01G510900 chrUn 78.295 387 72 9 1250 1630 401026707 401026327 4.140000e-59 239.0
51 TraesCS3A01G510900 chrUn 88.542 192 16 4 2837 3027 28418095 28417909 8.960000e-56 228.0
52 TraesCS3A01G510900 chrUn 85.366 164 22 1 2370 2531 343736171 343736008 5.510000e-38 169.0
53 TraesCS3A01G510900 chrUn 85.366 164 22 1 2370 2531 355127163 355127326 5.510000e-38 169.0
54 TraesCS3A01G510900 chrUn 85.366 164 22 1 2370 2531 355693768 355693931 5.510000e-38 169.0
55 TraesCS3A01G510900 chrUn 92.683 41 2 1 2532 2571 309170261 309170301 1.240000e-04 58.4
56 TraesCS3A01G510900 chrUn 92.683 41 2 1 2532 2571 385138071 385138111 1.240000e-04 58.4
57 TraesCS3A01G510900 chr5D 87.500 232 13 7 2608 2839 551071069 551070854 1.480000e-63 254.0
58 TraesCS3A01G510900 chr5D 83.898 236 15 13 2608 2837 178471788 178472006 1.510000e-48 204.0
59 TraesCS3A01G510900 chr5D 87.786 131 16 0 3029 3159 421914584 421914454 1.540000e-33 154.0
60 TraesCS3A01G510900 chr5D 93.976 83 5 0 2532 2614 551071589 551071507 3.360000e-25 126.0
61 TraesCS3A01G510900 chr5B 90.476 189 11 2 3029 3210 100434792 100434604 3.200000e-60 243.0
62 TraesCS3A01G510900 chr5B 93.966 116 5 2 2928 3041 64366485 64366370 1.180000e-39 174.0
63 TraesCS3A01G510900 chr2D 85.294 238 11 16 2608 2839 146792970 146792751 1.160000e-54 224.0
64 TraesCS3A01G510900 chr2D 84.454 238 13 7 2608 2839 147161708 147161489 2.510000e-51 213.0
65 TraesCS3A01G510900 chr2D 84.232 241 12 7 2608 2839 146472046 146471823 9.030000e-51 211.0
66 TraesCS3A01G510900 chr2D 87.097 62 8 0 1358 1419 643435343 643435404 1.600000e-08 71.3
67 TraesCS3A01G510900 chr2D 87.273 55 7 0 1528 1582 60108291 60108237 2.680000e-06 63.9
68 TraesCS3A01G510900 chr2D 100.000 30 0 0 1909 1938 643775651 643775680 4.480000e-04 56.5
69 TraesCS3A01G510900 chr2A 84.454 238 14 13 2608 2839 155745376 155745596 2.510000e-51 213.0
70 TraesCS3A01G510900 chr2A 72.542 295 58 17 1358 1645 768266844 768266566 1.240000e-09 75.0
71 TraesCS3A01G510900 chr4B 83.193 238 17 13 2608 2839 339466512 339466292 2.530000e-46 196.0
72 TraesCS3A01G510900 chr6D 86.857 175 16 5 2368 2535 2138322 2138148 4.230000e-44 189.0
73 TraesCS3A01G510900 chr6D 86.747 166 20 2 2367 2530 297402173 297402338 1.970000e-42 183.0
74 TraesCS3A01G510900 chr2B 82.845 239 11 9 2608 2837 206692383 206692166 1.520000e-43 187.0
75 TraesCS3A01G510900 chr2B 72.131 305 62 17 1358 1655 793506022 793505734 1.600000e-08 71.3
76 TraesCS3A01G510900 chr2B 100.000 30 0 0 1909 1938 793349413 793349384 4.480000e-04 56.5
77 TraesCS3A01G510900 chr4D 88.235 153 16 2 2367 2517 503063404 503063556 7.080000e-42 182.0
78 TraesCS3A01G510900 chr4D 85.926 135 19 0 3029 3163 80712458 80712324 9.290000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G510900 chr3A 730654746 730657957 3211 True 5932.000000 5932 100.000000 1 3212 1 chr3A.!!$R2 3211
1 TraesCS3A01G510900 chr3A 730115862 730117335 1473 True 1618.000000 1618 86.830000 840 2312 1 chr3A.!!$R1 1472
2 TraesCS3A01G510900 chr3A 696704505 696705088 583 False 900.000000 900 94.397000 1 589 1 chr3A.!!$F2 588
3 TraesCS3A01G510900 chr3D 600632010 600633456 1446 False 1679.000000 1679 87.908000 874 2312 1 chr3D.!!$F2 1438
4 TraesCS3A01G510900 chr3D 600819567 600821230 1663 True 1189.000000 2215 94.391000 589 2409 2 chr3D.!!$R3 1820
5 TraesCS3A01G510900 chr3B 807975627 807977094 1467 False 1676.000000 1676 87.608000 850 2312 1 chr3B.!!$F2 1462
6 TraesCS3A01G510900 chr3B 808042303 808046424 4121 True 662.175000 2176 92.883750 589 2533 4 chr3B.!!$R3 1944
7 TraesCS3A01G510900 chr5A 585086694 585087281 587 True 944.000000 944 95.593000 3 592 1 chr5A.!!$R2 589
8 TraesCS3A01G510900 chr5A 493027350 493027932 582 False 889.000000 889 94.058000 1 589 1 chr5A.!!$F1 588
9 TraesCS3A01G510900 chr5A 559459434 559460025 591 False 885.000000 885 93.603000 1 594 1 chr5A.!!$F3 593
10 TraesCS3A01G510900 chr7A 87163553 87164136 583 False 872.000000 872 93.548000 1 589 1 chr7A.!!$F1 588
11 TraesCS3A01G510900 chr7A 648737785 648738375 590 True 859.000000 859 92.941000 1 592 1 chr7A.!!$R3 591
12 TraesCS3A01G510900 chr7A 700603918 700604830 912 True 214.666667 268 91.463667 2527 3212 3 chr7A.!!$R4 685
13 TraesCS3A01G510900 chr1A 257876152 257876731 579 True 869.000000 869 93.537000 4 591 1 chr1A.!!$R2 587
14 TraesCS3A01G510900 chr1A 545761277 545761859 582 False 869.000000 869 93.401000 1 591 1 chr1A.!!$F1 590
15 TraesCS3A01G510900 chr4A 152771499 152772078 579 False 865.000000 865 93.401000 1 591 1 chr4A.!!$F1 590
16 TraesCS3A01G510900 chr7D 554150435 554151191 756 False 223.000000 316 92.748500 2527 2839 2 chr7D.!!$F1 312
17 TraesCS3A01G510900 chrUn 90725906 90726837 931 True 276.000000 276 72.584000 1250 2182 1 chrUn.!!$R2 932
18 TraesCS3A01G510900 chrUn 90938451 90939382 931 True 276.000000 276 72.584000 1250 2182 1 chrUn.!!$R3 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 3366 0.0982 CAAGTGCATCGCATCCACTG 59.902 55.0 0.0 0.0 41.91 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2899 5807 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 1.904771 CGCAGGTGGGAGGTCATTA 59.095 57.895 0.00 0.00 0.00 1.90
277 282 8.944029 TCTATGTATGCCGTAGTAGTTTCTATC 58.056 37.037 0.00 0.00 34.73 2.08
278 283 7.762588 ATGTATGCCGTAGTAGTTTCTATCT 57.237 36.000 0.00 0.00 0.00 1.98
279 284 8.859236 ATGTATGCCGTAGTAGTTTCTATCTA 57.141 34.615 0.00 0.00 0.00 1.98
280 285 8.859236 TGTATGCCGTAGTAGTTTCTATCTAT 57.141 34.615 0.00 0.00 0.00 1.98
545 562 1.453155 GATGGGCACACGTCAAATCT 58.547 50.000 0.00 0.00 0.00 2.40
596 613 1.035923 TGGAGATGCTCTAAGAGGCG 58.964 55.000 0.00 0.00 0.00 5.52
640 657 3.001736 GCTGATCATTTACTCTTGGTCGC 59.998 47.826 0.00 0.00 0.00 5.19
684 701 5.154215 GCTTTCAGCAGTGATCAGTAATC 57.846 43.478 1.86 0.00 41.89 1.75
685 702 4.633126 GCTTTCAGCAGTGATCAGTAATCA 59.367 41.667 1.86 0.00 41.89 2.57
686 703 5.122869 GCTTTCAGCAGTGATCAGTAATCAA 59.877 40.000 1.86 0.00 42.68 2.57
687 704 6.486253 TTTCAGCAGTGATCAGTAATCAAC 57.514 37.500 1.86 0.00 45.88 3.18
688 705 4.176271 TCAGCAGTGATCAGTAATCAACG 58.824 43.478 1.86 0.00 45.88 4.10
689 706 3.308053 CAGCAGTGATCAGTAATCAACGG 59.692 47.826 1.86 0.00 45.88 4.44
690 707 2.030946 GCAGTGATCAGTAATCAACGGC 59.969 50.000 1.86 0.00 45.88 5.68
691 708 3.261580 CAGTGATCAGTAATCAACGGCA 58.738 45.455 1.86 0.00 45.88 5.69
692 709 3.873361 CAGTGATCAGTAATCAACGGCAT 59.127 43.478 1.86 0.00 45.88 4.40
693 710 4.025396 CAGTGATCAGTAATCAACGGCATC 60.025 45.833 1.86 0.00 45.88 3.91
694 711 4.122776 GTGATCAGTAATCAACGGCATCT 58.877 43.478 0.00 0.00 45.88 2.90
695 712 4.025396 GTGATCAGTAATCAACGGCATCTG 60.025 45.833 0.00 0.00 45.88 2.90
696 713 3.885724 TCAGTAATCAACGGCATCTGA 57.114 42.857 0.00 0.00 0.00 3.27
697 714 4.406648 TCAGTAATCAACGGCATCTGAT 57.593 40.909 0.00 0.00 33.66 2.90
698 715 4.122046 TCAGTAATCAACGGCATCTGATG 58.878 43.478 13.26 13.26 32.60 3.07
699 716 4.122046 CAGTAATCAACGGCATCTGATGA 58.878 43.478 21.30 0.10 32.60 2.92
700 717 4.025396 CAGTAATCAACGGCATCTGATGAC 60.025 45.833 21.30 17.58 34.69 3.06
701 718 2.696989 ATCAACGGCATCTGATGACA 57.303 45.000 22.52 4.04 38.56 3.58
702 719 2.696989 TCAACGGCATCTGATGACAT 57.303 45.000 22.52 5.11 38.56 3.06
703 720 2.282407 TCAACGGCATCTGATGACATG 58.718 47.619 22.52 19.06 38.56 3.21
704 721 2.011947 CAACGGCATCTGATGACATGT 58.988 47.619 22.52 10.82 38.56 3.21
705 722 1.945387 ACGGCATCTGATGACATGTC 58.055 50.000 22.52 19.27 38.56 3.06
706 723 1.207811 ACGGCATCTGATGACATGTCA 59.792 47.619 29.67 29.67 44.59 3.58
707 724 2.282407 CGGCATCTGATGACATGTCAA 58.718 47.619 31.00 16.05 43.58 3.18
708 725 2.679336 CGGCATCTGATGACATGTCAAA 59.321 45.455 31.00 20.78 43.58 2.69
709 726 3.242641 CGGCATCTGATGACATGTCAAAG 60.243 47.826 31.00 27.67 43.58 2.77
710 727 3.693085 GGCATCTGATGACATGTCAAAGT 59.307 43.478 31.00 16.16 43.58 2.66
711 728 4.201891 GGCATCTGATGACATGTCAAAGTC 60.202 45.833 31.00 23.42 43.58 3.01
712 729 4.493708 GCATCTGATGACATGTCAAAGTCG 60.494 45.833 31.00 22.89 43.58 4.18
713 730 4.519540 TCTGATGACATGTCAAAGTCGA 57.480 40.909 31.00 20.27 43.58 4.20
714 731 4.881920 TCTGATGACATGTCAAAGTCGAA 58.118 39.130 31.00 13.65 43.58 3.71
715 732 5.296748 TCTGATGACATGTCAAAGTCGAAA 58.703 37.500 31.00 12.84 43.58 3.46
716 733 5.406477 TCTGATGACATGTCAAAGTCGAAAG 59.594 40.000 31.00 16.96 43.58 2.62
717 734 3.878086 TGACATGTCAAAGTCGAAAGC 57.122 42.857 26.02 0.00 37.58 3.51
718 735 3.466836 TGACATGTCAAAGTCGAAAGCT 58.533 40.909 26.02 0.00 37.58 3.74
719 736 4.627058 TGACATGTCAAAGTCGAAAGCTA 58.373 39.130 26.02 0.00 37.58 3.32
720 737 4.686091 TGACATGTCAAAGTCGAAAGCTAG 59.314 41.667 26.02 0.00 37.58 3.42
721 738 4.883083 ACATGTCAAAGTCGAAAGCTAGA 58.117 39.130 0.00 0.00 0.00 2.43
722 739 4.686554 ACATGTCAAAGTCGAAAGCTAGAC 59.313 41.667 8.37 8.37 37.63 2.59
723 740 9.553022 TGACATGTCAAAGTCGAAAGCTAGACT 62.553 40.741 26.02 12.04 40.83 3.24
724 741 5.700722 TGTCAAAGTCGAAAGCTAGACTA 57.299 39.130 16.49 2.92 45.91 2.59
725 742 5.458891 TGTCAAAGTCGAAAGCTAGACTAC 58.541 41.667 16.49 12.67 45.91 2.73
726 743 4.858140 GTCAAAGTCGAAAGCTAGACTACC 59.142 45.833 16.49 5.22 45.91 3.18
727 744 4.082354 TCAAAGTCGAAAGCTAGACTACCC 60.082 45.833 16.49 0.00 45.91 3.69
728 745 3.083122 AGTCGAAAGCTAGACTACCCA 57.917 47.619 15.14 0.00 44.93 4.51
729 746 3.633418 AGTCGAAAGCTAGACTACCCAT 58.367 45.455 15.14 0.00 44.93 4.00
730 747 3.633065 AGTCGAAAGCTAGACTACCCATC 59.367 47.826 15.14 0.00 44.93 3.51
731 748 3.380637 GTCGAAAGCTAGACTACCCATCA 59.619 47.826 8.97 0.00 34.74 3.07
732 749 4.038162 GTCGAAAGCTAGACTACCCATCAT 59.962 45.833 8.97 0.00 34.74 2.45
733 750 5.241064 GTCGAAAGCTAGACTACCCATCATA 59.759 44.000 8.97 0.00 34.74 2.15
734 751 5.473846 TCGAAAGCTAGACTACCCATCATAG 59.526 44.000 0.00 0.00 0.00 2.23
735 752 5.241949 CGAAAGCTAGACTACCCATCATAGT 59.758 44.000 0.00 0.00 35.54 2.12
736 753 6.239064 CGAAAGCTAGACTACCCATCATAGTT 60.239 42.308 0.00 0.00 32.93 2.24
737 754 7.040617 CGAAAGCTAGACTACCCATCATAGTTA 60.041 40.741 0.00 0.00 32.93 2.24
738 755 7.768807 AAGCTAGACTACCCATCATAGTTAG 57.231 40.000 0.00 0.00 32.93 2.34
739 756 6.249951 AGCTAGACTACCCATCATAGTTAGG 58.750 44.000 0.00 0.00 32.93 2.69
740 757 6.011481 GCTAGACTACCCATCATAGTTAGGT 58.989 44.000 0.00 0.00 32.93 3.08
741 758 6.494146 GCTAGACTACCCATCATAGTTAGGTT 59.506 42.308 0.00 0.00 32.93 3.50
742 759 6.732896 AGACTACCCATCATAGTTAGGTTG 57.267 41.667 0.00 0.00 32.93 3.77
743 760 5.070580 AGACTACCCATCATAGTTAGGTTGC 59.929 44.000 0.00 0.00 32.93 4.17
744 761 4.969359 ACTACCCATCATAGTTAGGTTGCT 59.031 41.667 0.00 0.00 28.03 3.91
745 762 4.862641 ACCCATCATAGTTAGGTTGCTT 57.137 40.909 0.00 0.00 0.00 3.91
746 763 5.968676 ACCCATCATAGTTAGGTTGCTTA 57.031 39.130 0.00 0.00 0.00 3.09
747 764 5.930135 ACCCATCATAGTTAGGTTGCTTAG 58.070 41.667 0.00 0.00 0.00 2.18
748 765 5.665812 ACCCATCATAGTTAGGTTGCTTAGA 59.334 40.000 0.00 0.00 0.00 2.10
749 766 6.157994 ACCCATCATAGTTAGGTTGCTTAGAA 59.842 38.462 0.00 0.00 0.00 2.10
750 767 7.054124 CCCATCATAGTTAGGTTGCTTAGAAA 58.946 38.462 0.00 0.00 0.00 2.52
751 768 7.227512 CCCATCATAGTTAGGTTGCTTAGAAAG 59.772 40.741 0.00 0.00 0.00 2.62
764 781 2.751166 TAGAAAGCCAGTCAGACTGC 57.249 50.000 23.46 18.15 44.63 4.40
765 782 1.055040 AGAAAGCCAGTCAGACTGCT 58.945 50.000 23.46 19.87 44.63 4.24
766 783 1.001860 AGAAAGCCAGTCAGACTGCTC 59.998 52.381 23.46 16.63 44.63 4.26
767 784 1.001860 GAAAGCCAGTCAGACTGCTCT 59.998 52.381 23.46 18.39 44.63 4.09
768 785 0.607620 AAGCCAGTCAGACTGCTCTC 59.392 55.000 23.46 12.22 44.63 3.20
769 786 1.217779 GCCAGTCAGACTGCTCTCC 59.782 63.158 23.46 6.39 44.63 3.71
770 787 1.510383 CCAGTCAGACTGCTCTCCG 59.490 63.158 23.46 6.46 44.63 4.63
771 788 1.153862 CAGTCAGACTGCTCTCCGC 60.154 63.158 17.77 0.00 39.62 5.54
772 789 2.183046 GTCAGACTGCTCTCCGCC 59.817 66.667 0.00 0.00 38.05 6.13
773 790 2.036414 TCAGACTGCTCTCCGCCT 59.964 61.111 0.00 0.00 38.05 5.52
774 791 2.049185 TCAGACTGCTCTCCGCCTC 61.049 63.158 0.00 0.00 38.05 4.70
775 792 2.051518 CAGACTGCTCTCCGCCTCT 61.052 63.158 0.00 0.00 38.05 3.69
776 793 2.051518 AGACTGCTCTCCGCCTCTG 61.052 63.158 0.00 0.00 38.05 3.35
777 794 3.714871 GACTGCTCTCCGCCTCTGC 62.715 68.421 0.00 0.00 38.05 4.26
778 795 4.527583 CTGCTCTCCGCCTCTGCC 62.528 72.222 0.00 0.00 38.05 4.85
780 797 4.219999 GCTCTCCGCCTCTGCCTC 62.220 72.222 0.00 0.00 0.00 4.70
781 798 3.898509 CTCTCCGCCTCTGCCTCG 61.899 72.222 0.00 0.00 0.00 4.63
848 2461 5.455525 ACGTTTGCTTTCAAAGAAATTCTCG 59.544 36.000 0.00 3.02 42.31 4.04
853 2471 4.560427 GCTTTCAAAGAAATTCTCGGCATC 59.440 41.667 0.00 0.00 0.00 3.91
929 2548 4.258543 TCAAATATTTGACTCGACCACCC 58.741 43.478 23.86 0.00 41.88 4.61
990 3363 3.189921 GCAAGTGCATCGCATCCA 58.810 55.556 0.00 0.00 41.91 3.41
991 3364 1.226491 GCAAGTGCATCGCATCCAC 60.226 57.895 0.00 0.00 41.91 4.02
992 3365 1.651240 GCAAGTGCATCGCATCCACT 61.651 55.000 0.00 0.00 41.91 4.00
993 3366 0.098200 CAAGTGCATCGCATCCACTG 59.902 55.000 0.00 0.00 41.91 3.66
1110 3512 3.667282 GCACAGCCACAGCCACAG 61.667 66.667 0.00 0.00 41.25 3.66
1113 3544 4.960866 CAGCCACAGCCACAGCCA 62.961 66.667 0.00 0.00 41.25 4.75
1114 3545 4.962836 AGCCACAGCCACAGCCAC 62.963 66.667 0.00 0.00 41.25 5.01
1116 3547 2.282674 CCACAGCCACAGCCACAT 60.283 61.111 0.00 0.00 41.25 3.21
1117 3548 2.338015 CCACAGCCACAGCCACATC 61.338 63.158 0.00 0.00 41.25 3.06
1118 3549 2.034687 ACAGCCACAGCCACATCC 59.965 61.111 0.00 0.00 41.25 3.51
1119 3550 2.353958 CAGCCACAGCCACATCCT 59.646 61.111 0.00 0.00 41.25 3.24
1120 3551 1.200760 ACAGCCACAGCCACATCCTA 61.201 55.000 0.00 0.00 41.25 2.94
1121 3552 0.745845 CAGCCACAGCCACATCCTAC 60.746 60.000 0.00 0.00 41.25 3.18
1141 3572 2.026822 ACGATCACCATGGCTTCTTCTT 60.027 45.455 13.04 0.00 0.00 2.52
1272 3713 2.225963 CCTGTCGTTCGACTTCTACAGT 59.774 50.000 22.49 0.00 39.07 3.55
1431 3872 2.241880 CGACAAGACCAACGGCGTT 61.242 57.895 21.19 21.19 0.00 4.84
1734 4175 4.514577 AAGATCGGCCTGGACGCG 62.515 66.667 19.28 3.53 32.07 6.01
1824 4265 0.401395 TGTTCCCCAAGGAGGACACT 60.401 55.000 0.00 0.00 45.19 3.55
1911 4352 3.799755 GCCAACGACATCCGCACC 61.800 66.667 0.00 0.00 43.32 5.01
2233 4687 5.015515 AGTTAGTAGGCTTTAGTCGGTTCT 58.984 41.667 0.00 0.00 0.00 3.01
2343 4798 0.806102 CTGTGGCCCTCGTGTAATCG 60.806 60.000 0.00 0.00 0.00 3.34
2378 4833 2.969821 TGGTTGTGCTAACTTGGGAT 57.030 45.000 4.78 0.00 0.00 3.85
2435 4892 8.868522 ATGTCCACTTTTAAGATCATCTTTGA 57.131 30.769 4.90 0.00 37.89 2.69
2448 4905 2.888834 TCTTTGAAGCTGGCCAAAAC 57.111 45.000 7.01 0.00 32.63 2.43
2451 4908 4.151883 TCTTTGAAGCTGGCCAAAACTAT 58.848 39.130 7.01 0.00 32.63 2.12
2460 4917 5.770162 AGCTGGCCAAAACTATAATGGATAC 59.230 40.000 7.01 0.00 36.27 2.24
2461 4918 5.334879 GCTGGCCAAAACTATAATGGATACG 60.335 44.000 7.01 0.00 42.51 3.06
2469 4926 6.659745 AACTATAATGGATACGTGCCACTA 57.340 37.500 13.31 8.27 38.44 2.74
2480 4937 0.317479 GTGCCACTAGTCCACGAGTT 59.683 55.000 7.28 0.00 29.21 3.01
2483 4940 1.402984 GCCACTAGTCCACGAGTTGAG 60.403 57.143 0.00 0.00 29.21 3.02
2489 4946 1.078759 GTCCACGAGTTGAGCGATGG 61.079 60.000 0.00 0.00 33.94 3.51
2512 4969 7.834803 TGGTAACATTTGTGCAAATATCATGA 58.165 30.769 9.48 0.00 46.17 3.07
2517 4974 8.583810 ACATTTGTGCAAATATCATGATAAGC 57.416 30.769 19.03 20.67 38.84 3.09
2550 5007 4.603535 AGCAAAAGGGCCCGTGCT 62.604 61.111 32.86 32.86 42.40 4.40
2561 5018 3.283684 CCGTGCTTTGCAACGGGA 61.284 61.111 17.99 4.42 43.66 5.14
2594 5051 1.270550 GGCCATCAAATAAGCCATCGG 59.729 52.381 0.00 0.00 45.07 4.18
2614 5521 6.222038 TCGGGAACATAATATCTATCCTGC 57.778 41.667 0.00 0.00 34.11 4.85
2650 5557 9.952188 TCATCAATAAACTTCAGTATCGTAGAG 57.048 33.333 0.00 0.00 43.63 2.43
2672 5579 8.245929 AGAGGGAGAATTATGGAGGTATACTA 57.754 38.462 2.25 0.00 0.00 1.82
2673 5580 8.689054 AGAGGGAGAATTATGGAGGTATACTAA 58.311 37.037 2.25 0.00 0.00 2.24
2675 5582 9.684702 AGGGAGAATTATGGAGGTATACTAAAA 57.315 33.333 2.25 0.00 0.00 1.52
2718 5625 7.203910 AGTAGTGGCTTTAGAGTCATAAATCG 58.796 38.462 0.00 0.00 40.15 3.34
2772 5679 8.091449 AGACTCAATAGTTGGTAAGAAACTCTG 58.909 37.037 0.00 0.00 38.73 3.35
2777 5684 9.665264 CAATAGTTGGTAAGAAACTCTGTTTTC 57.335 33.333 0.00 0.00 38.73 2.29
2802 5710 9.077885 TCATTAGAGAAAAGGCATGTAAACTTT 57.922 29.630 0.00 0.00 36.09 2.66
2839 5747 0.321387 ATCAGCTAGCATCATGGCCG 60.321 55.000 18.83 0.00 0.00 6.13
2840 5748 2.281345 AGCTAGCATCATGGCCGC 60.281 61.111 18.83 0.00 0.00 6.53
2841 5749 3.720193 GCTAGCATCATGGCCGCG 61.720 66.667 10.63 0.00 0.00 6.46
2842 5750 2.029518 CTAGCATCATGGCCGCGA 59.970 61.111 8.23 0.00 0.00 5.87
2843 5751 1.595109 CTAGCATCATGGCCGCGAA 60.595 57.895 8.23 0.00 0.00 4.70
2844 5752 0.952497 CTAGCATCATGGCCGCGAAT 60.952 55.000 8.23 0.00 0.00 3.34
2845 5753 0.950555 TAGCATCATGGCCGCGAATC 60.951 55.000 8.23 0.00 0.00 2.52
2846 5754 2.545596 GCATCATGGCCGCGAATCA 61.546 57.895 8.23 2.58 0.00 2.57
2847 5755 2.024117 CATCATGGCCGCGAATCAA 58.976 52.632 8.23 0.00 0.00 2.57
2848 5756 0.317269 CATCATGGCCGCGAATCAAC 60.317 55.000 8.23 0.00 0.00 3.18
2849 5757 1.447317 ATCATGGCCGCGAATCAACC 61.447 55.000 8.23 0.00 0.00 3.77
2850 5758 2.114670 CATGGCCGCGAATCAACCT 61.115 57.895 8.23 0.00 0.00 3.50
2851 5759 2.114670 ATGGCCGCGAATCAACCTG 61.115 57.895 8.23 0.00 0.00 4.00
2852 5760 2.746277 GGCCGCGAATCAACCTGT 60.746 61.111 8.23 0.00 0.00 4.00
2853 5761 2.480555 GCCGCGAATCAACCTGTG 59.519 61.111 8.23 0.00 0.00 3.66
2854 5762 2.032634 GCCGCGAATCAACCTGTGA 61.033 57.895 8.23 0.00 41.67 3.58
2864 5772 3.576078 TCAACCTGTGATTGAGTTGGT 57.424 42.857 0.00 0.00 39.98 3.67
2865 5773 3.897239 TCAACCTGTGATTGAGTTGGTT 58.103 40.909 0.00 0.00 39.98 3.67
2866 5774 5.042463 TCAACCTGTGATTGAGTTGGTTA 57.958 39.130 0.00 0.00 39.98 2.85
2867 5775 5.063204 TCAACCTGTGATTGAGTTGGTTAG 58.937 41.667 0.00 0.00 39.98 2.34
2868 5776 4.021102 ACCTGTGATTGAGTTGGTTAGG 57.979 45.455 0.00 0.00 0.00 2.69
2869 5777 3.394606 ACCTGTGATTGAGTTGGTTAGGT 59.605 43.478 0.00 0.00 0.00 3.08
2870 5778 3.753272 CCTGTGATTGAGTTGGTTAGGTG 59.247 47.826 0.00 0.00 0.00 4.00
2871 5779 3.750371 TGTGATTGAGTTGGTTAGGTGG 58.250 45.455 0.00 0.00 0.00 4.61
2872 5780 3.392947 TGTGATTGAGTTGGTTAGGTGGA 59.607 43.478 0.00 0.00 0.00 4.02
2873 5781 3.751698 GTGATTGAGTTGGTTAGGTGGAC 59.248 47.826 0.00 0.00 0.00 4.02
2874 5782 3.392947 TGATTGAGTTGGTTAGGTGGACA 59.607 43.478 0.00 0.00 0.00 4.02
2875 5783 3.485463 TTGAGTTGGTTAGGTGGACAG 57.515 47.619 0.00 0.00 0.00 3.51
2876 5784 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
2877 5785 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
2878 5786 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
2879 5787 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
2880 5788 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
2881 5789 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
2882 5790 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
2883 5791 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
2884 5792 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
2885 5793 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
2886 5794 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
2894 5802 2.869940 TGGTATCCCCAACACACCA 58.130 52.632 0.00 0.00 41.50 4.17
2895 5803 0.695924 TGGTATCCCCAACACACCAG 59.304 55.000 0.00 0.00 41.50 4.00
2896 5804 0.034477 GGTATCCCCAACACACCAGG 60.034 60.000 0.00 0.00 0.00 4.45
2897 5805 0.988832 GTATCCCCAACACACCAGGA 59.011 55.000 0.00 0.00 0.00 3.86
2898 5806 1.564348 GTATCCCCAACACACCAGGAT 59.436 52.381 0.00 0.00 40.43 3.24
2899 5807 1.084018 ATCCCCAACACACCAGGATT 58.916 50.000 0.00 0.00 33.48 3.01
2900 5808 0.404040 TCCCCAACACACCAGGATTC 59.596 55.000 0.00 0.00 0.00 2.52
2901 5809 0.112218 CCCCAACACACCAGGATTCA 59.888 55.000 0.00 0.00 0.00 2.57
2902 5810 1.480312 CCCCAACACACCAGGATTCAA 60.480 52.381 0.00 0.00 0.00 2.69
2903 5811 2.315176 CCCAACACACCAGGATTCAAA 58.685 47.619 0.00 0.00 0.00 2.69
2904 5812 2.899256 CCCAACACACCAGGATTCAAAT 59.101 45.455 0.00 0.00 0.00 2.32
2905 5813 3.056607 CCCAACACACCAGGATTCAAATC 60.057 47.826 0.00 0.00 34.66 2.17
2916 5824 1.064654 GATTCAAATCCTGGTGCTCGC 59.935 52.381 0.00 0.00 0.00 5.03
2917 5825 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
2918 5826 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2919 5827 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
2920 5828 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
2921 5829 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
2922 5830 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
2923 5831 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
2924 5832 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
2925 5833 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
2926 5834 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
2927 5835 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
2928 5836 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
2929 5837 1.869767 GTGCTCGCATTATTCCTGGAG 59.130 52.381 0.00 0.00 0.00 3.86
2930 5838 1.202687 TGCTCGCATTATTCCTGGAGG 60.203 52.381 0.00 0.00 0.00 4.30
2931 5839 1.202698 GCTCGCATTATTCCTGGAGGT 60.203 52.381 0.00 0.00 36.34 3.85
2932 5840 2.487934 CTCGCATTATTCCTGGAGGTG 58.512 52.381 0.00 0.00 36.34 4.00
2933 5841 0.947244 CGCATTATTCCTGGAGGTGC 59.053 55.000 11.98 11.98 36.34 5.01
2934 5842 1.475751 CGCATTATTCCTGGAGGTGCT 60.476 52.381 16.82 0.00 32.10 4.40
2935 5843 2.225467 GCATTATTCCTGGAGGTGCTC 58.775 52.381 13.75 0.00 36.34 4.26
2936 5844 2.421952 GCATTATTCCTGGAGGTGCTCA 60.422 50.000 13.75 0.00 36.34 4.26
2937 5845 3.749954 GCATTATTCCTGGAGGTGCTCAT 60.750 47.826 13.75 0.24 36.34 2.90
2938 5846 4.505566 GCATTATTCCTGGAGGTGCTCATA 60.506 45.833 13.75 0.00 36.34 2.15
2939 5847 4.963318 TTATTCCTGGAGGTGCTCATAG 57.037 45.455 0.00 0.00 36.34 2.23
2940 5848 1.500474 TTCCTGGAGGTGCTCATAGG 58.500 55.000 0.00 0.00 37.57 2.57
2941 5849 0.399091 TCCTGGAGGTGCTCATAGGG 60.399 60.000 0.00 0.00 37.15 3.53
2942 5850 1.414061 CCTGGAGGTGCTCATAGGGG 61.414 65.000 0.00 0.00 34.74 4.79
2943 5851 0.692419 CTGGAGGTGCTCATAGGGGT 60.692 60.000 0.00 0.00 31.08 4.95
2944 5852 0.639943 TGGAGGTGCTCATAGGGGTA 59.360 55.000 0.00 0.00 31.08 3.69
2945 5853 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
2946 5854 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
2947 5855 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
2948 5856 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
2949 5857 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
2950 5858 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
2951 5859 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
2952 5860 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
2953 5861 0.043485 TCATAGGGGTAGGGTGTGCA 59.957 55.000 0.00 0.00 0.00 4.57
2954 5862 1.140312 CATAGGGGTAGGGTGTGCAT 58.860 55.000 0.00 0.00 0.00 3.96
2955 5863 1.140312 ATAGGGGTAGGGTGTGCATG 58.860 55.000 0.00 0.00 0.00 4.06
2956 5864 0.252974 TAGGGGTAGGGTGTGCATGT 60.253 55.000 0.00 0.00 0.00 3.21
2957 5865 1.077716 GGGGTAGGGTGTGCATGTC 60.078 63.158 0.00 0.00 0.00 3.06
2958 5866 1.562672 GGGGTAGGGTGTGCATGTCT 61.563 60.000 0.00 0.00 0.00 3.41
2959 5867 0.392998 GGGTAGGGTGTGCATGTCTG 60.393 60.000 0.00 0.00 0.00 3.51
2970 5878 0.940126 GCATGTCTGCGTTCATAGGG 59.060 55.000 0.00 0.00 38.92 3.53
2971 5879 1.473257 GCATGTCTGCGTTCATAGGGA 60.473 52.381 0.00 0.00 38.92 4.20
2972 5880 2.808202 GCATGTCTGCGTTCATAGGGAT 60.808 50.000 0.00 0.00 38.92 3.85
2973 5881 2.602257 TGTCTGCGTTCATAGGGATG 57.398 50.000 0.00 0.00 0.00 3.51
2974 5882 2.107366 TGTCTGCGTTCATAGGGATGA 58.893 47.619 0.00 0.00 40.45 2.92
2975 5883 2.101415 TGTCTGCGTTCATAGGGATGAG 59.899 50.000 0.00 0.00 43.03 2.90
2976 5884 2.101582 GTCTGCGTTCATAGGGATGAGT 59.898 50.000 0.00 0.00 43.03 3.41
2977 5885 2.101415 TCTGCGTTCATAGGGATGAGTG 59.899 50.000 0.00 0.00 43.03 3.51
2978 5886 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
2979 5887 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
2980 5888 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
2981 5889 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
2982 5890 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
2983 5891 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
2984 5892 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
2985 5893 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
2986 5894 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
2987 5895 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
2988 5896 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
2989 5897 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
2990 5898 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
2991 5899 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
2992 5900 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
2993 5901 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
2994 5902 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
2995 5903 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
2996 5904 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
2999 5907 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
3000 5908 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
3001 5909 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
3002 5910 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
3003 5911 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
3004 5912 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
3005 5913 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
3006 5914 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
3007 5915 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
3008 5916 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
3009 5917 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
3010 5918 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
3011 5919 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
3012 5920 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
3013 5921 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
3014 5922 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
3015 5923 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
3016 5924 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
3017 5925 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
3018 5926 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
3019 5927 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
3020 5928 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
3021 5929 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
3022 5930 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
3023 5931 5.122519 TGTGTCTGTACTGATGCTCAAAAA 58.877 37.500 5.69 0.00 0.00 1.94
3073 5981 3.347216 GTGTGTCCCTTGAACATGCTAT 58.653 45.455 0.00 0.00 0.00 2.97
3152 6067 3.093717 AGTGTTAGGCGTAATCCATCG 57.906 47.619 1.65 0.00 0.00 3.84
3159 6074 1.003866 GGCGTAATCCATCGAAAGCAC 60.004 52.381 0.00 0.00 0.00 4.40
3165 6080 2.270352 TCCATCGAAAGCACAAAGGT 57.730 45.000 0.00 0.00 0.00 3.50
3178 6093 2.160615 CACAAAGGTCGACAAACACACA 59.839 45.455 18.91 0.00 0.00 3.72
3192 6107 5.654650 ACAAACACACAAAAGGACCAATCTA 59.345 36.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 1.469251 CGTTCATCGTCCGAGGTGAAT 60.469 52.381 8.45 0.00 33.65 2.57
332 345 6.094325 GCAACTACTACGGCAGAGATAGATAT 59.906 42.308 0.00 0.00 0.00 1.63
342 355 1.076533 CGGTGCAACTACTACGGCAG 61.077 60.000 0.00 0.00 36.86 4.85
545 562 2.632541 CGCCGCACGGTAAAAACA 59.367 55.556 11.27 0.00 38.44 2.83
566 583 2.514592 ATCTCCAACATGCGCCCG 60.515 61.111 4.18 0.00 0.00 6.13
596 613 8.292448 TCAGCAGTTTCTTTATTTGATGAAGAC 58.708 33.333 0.00 0.00 35.02 3.01
640 657 4.549458 CAACTGTAAACAGAGGCAAATGG 58.451 43.478 16.74 0.00 46.59 3.16
682 699 2.696989 TGTCATCAGATGCCGTTGAT 57.303 45.000 5.41 0.00 34.48 2.57
683 700 2.282407 CATGTCATCAGATGCCGTTGA 58.718 47.619 5.41 0.00 0.00 3.18
684 701 2.011947 ACATGTCATCAGATGCCGTTG 58.988 47.619 5.41 0.00 0.00 4.10
685 702 2.283298 GACATGTCATCAGATGCCGTT 58.717 47.619 21.07 0.00 0.00 4.44
686 703 1.207811 TGACATGTCATCAGATGCCGT 59.792 47.619 24.56 0.00 34.14 5.68
687 704 1.944032 TGACATGTCATCAGATGCCG 58.056 50.000 24.56 0.00 34.14 5.69
688 705 3.693085 ACTTTGACATGTCATCAGATGCC 59.307 43.478 29.37 0.00 39.64 4.40
689 706 4.493708 CGACTTTGACATGTCATCAGATGC 60.494 45.833 29.37 20.12 39.64 3.91
690 707 4.866486 TCGACTTTGACATGTCATCAGATG 59.134 41.667 29.37 22.52 39.64 2.90
691 708 5.077134 TCGACTTTGACATGTCATCAGAT 57.923 39.130 29.37 18.86 39.64 2.90
692 709 4.519540 TCGACTTTGACATGTCATCAGA 57.480 40.909 29.37 21.16 39.64 3.27
693 710 5.596268 TTTCGACTTTGACATGTCATCAG 57.404 39.130 28.32 25.94 39.64 2.90
694 711 4.083855 GCTTTCGACTTTGACATGTCATCA 60.084 41.667 28.32 17.06 39.64 3.07
695 712 4.153117 AGCTTTCGACTTTGACATGTCATC 59.847 41.667 28.32 20.97 39.64 2.92
696 713 4.067896 AGCTTTCGACTTTGACATGTCAT 58.932 39.130 28.32 14.64 39.64 3.06
697 714 3.466836 AGCTTTCGACTTTGACATGTCA 58.533 40.909 24.56 24.56 37.91 3.58
698 715 4.923871 TCTAGCTTTCGACTTTGACATGTC 59.076 41.667 19.27 19.27 0.00 3.06
699 716 4.686554 GTCTAGCTTTCGACTTTGACATGT 59.313 41.667 0.00 0.00 0.00 3.21
700 717 4.926238 AGTCTAGCTTTCGACTTTGACATG 59.074 41.667 0.00 0.00 37.19 3.21
701 718 5.140747 AGTCTAGCTTTCGACTTTGACAT 57.859 39.130 0.00 0.00 37.19 3.06
702 719 4.585955 AGTCTAGCTTTCGACTTTGACA 57.414 40.909 0.00 0.00 37.19 3.58
703 720 4.858140 GGTAGTCTAGCTTTCGACTTTGAC 59.142 45.833 15.30 9.49 40.67 3.18
704 721 4.082354 GGGTAGTCTAGCTTTCGACTTTGA 60.082 45.833 15.30 0.00 40.67 2.69
705 722 4.174762 GGGTAGTCTAGCTTTCGACTTTG 58.825 47.826 15.30 0.00 40.67 2.77
706 723 3.830755 TGGGTAGTCTAGCTTTCGACTTT 59.169 43.478 15.30 0.00 40.67 2.66
707 724 3.428532 TGGGTAGTCTAGCTTTCGACTT 58.571 45.455 15.30 4.12 40.67 3.01
708 725 3.083122 TGGGTAGTCTAGCTTTCGACT 57.917 47.619 14.71 14.71 42.67 4.18
709 726 3.380637 TGATGGGTAGTCTAGCTTTCGAC 59.619 47.826 8.89 0.00 0.00 4.20
710 727 3.628008 TGATGGGTAGTCTAGCTTTCGA 58.372 45.455 8.89 0.00 0.00 3.71
711 728 4.592485 ATGATGGGTAGTCTAGCTTTCG 57.408 45.455 8.89 0.00 0.00 3.46
712 729 6.658188 ACTATGATGGGTAGTCTAGCTTTC 57.342 41.667 8.89 6.87 0.00 2.62
713 730 7.233757 CCTAACTATGATGGGTAGTCTAGCTTT 59.766 40.741 8.89 0.00 31.44 3.51
714 731 6.722129 CCTAACTATGATGGGTAGTCTAGCTT 59.278 42.308 8.89 0.00 31.44 3.74
715 732 6.183361 ACCTAACTATGATGGGTAGTCTAGCT 60.183 42.308 8.89 0.00 31.44 3.32
716 733 6.011481 ACCTAACTATGATGGGTAGTCTAGC 58.989 44.000 0.13 0.09 31.44 3.42
717 734 7.524038 GCAACCTAACTATGATGGGTAGTCTAG 60.524 44.444 0.13 0.00 31.44 2.43
718 735 6.267014 GCAACCTAACTATGATGGGTAGTCTA 59.733 42.308 0.13 0.00 31.44 2.59
719 736 5.070580 GCAACCTAACTATGATGGGTAGTCT 59.929 44.000 0.13 0.00 31.44 3.24
720 737 5.070580 AGCAACCTAACTATGATGGGTAGTC 59.929 44.000 0.13 0.00 31.44 2.59
721 738 4.969359 AGCAACCTAACTATGATGGGTAGT 59.031 41.667 0.13 0.00 33.98 2.73
722 739 5.552870 AGCAACCTAACTATGATGGGTAG 57.447 43.478 0.00 0.00 0.00 3.18
723 740 5.968676 AAGCAACCTAACTATGATGGGTA 57.031 39.130 0.00 0.00 0.00 3.69
724 741 4.862641 AAGCAACCTAACTATGATGGGT 57.137 40.909 0.00 0.00 0.00 4.51
725 742 6.174720 TCTAAGCAACCTAACTATGATGGG 57.825 41.667 0.00 0.00 0.00 4.00
726 743 8.147642 CTTTCTAAGCAACCTAACTATGATGG 57.852 38.462 0.00 0.00 0.00 3.51
743 760 2.999355 GCAGTCTGACTGGCTTTCTAAG 59.001 50.000 32.28 9.48 46.01 2.18
744 761 2.634940 AGCAGTCTGACTGGCTTTCTAA 59.365 45.455 32.28 0.00 46.01 2.10
745 762 2.232452 GAGCAGTCTGACTGGCTTTCTA 59.768 50.000 32.28 0.00 46.01 2.10
746 763 1.001860 GAGCAGTCTGACTGGCTTTCT 59.998 52.381 32.28 22.39 46.01 2.52
747 764 1.001860 AGAGCAGTCTGACTGGCTTTC 59.998 52.381 32.28 18.69 46.01 2.62
748 765 1.001860 GAGAGCAGTCTGACTGGCTTT 59.998 52.381 32.28 24.52 46.01 3.51
749 766 0.607620 GAGAGCAGTCTGACTGGCTT 59.392 55.000 32.28 20.39 46.01 4.35
750 767 1.257055 GGAGAGCAGTCTGACTGGCT 61.257 60.000 32.28 28.12 46.01 4.75
751 768 1.217779 GGAGAGCAGTCTGACTGGC 59.782 63.158 32.28 24.84 46.01 4.85
752 769 1.510383 CGGAGAGCAGTCTGACTGG 59.490 63.158 32.28 17.95 46.01 4.00
764 781 3.898509 CGAGGCAGAGGCGGAGAG 61.899 72.222 0.00 0.00 42.47 3.20
765 782 3.723097 ATCGAGGCAGAGGCGGAGA 62.723 63.158 0.00 0.00 42.47 3.71
766 783 3.206211 GATCGAGGCAGAGGCGGAG 62.206 68.421 0.00 0.00 42.47 4.63
767 784 3.219928 GATCGAGGCAGAGGCGGA 61.220 66.667 0.00 0.00 42.47 5.54
768 785 4.637489 CGATCGAGGCAGAGGCGG 62.637 72.222 10.26 0.00 42.47 6.13
769 786 3.815569 GACGATCGAGGCAGAGGCG 62.816 68.421 24.34 0.00 42.47 5.52
770 787 2.026879 GACGATCGAGGCAGAGGC 59.973 66.667 24.34 0.00 40.13 4.70
771 788 1.994507 AACGACGATCGAGGCAGAGG 61.995 60.000 24.34 3.77 43.74 3.69
772 789 0.656259 TAACGACGATCGAGGCAGAG 59.344 55.000 24.34 6.85 43.74 3.35
773 790 0.656259 CTAACGACGATCGAGGCAGA 59.344 55.000 24.34 1.17 43.74 4.26
774 791 0.930742 GCTAACGACGATCGAGGCAG 60.931 60.000 24.34 15.64 43.74 4.85
775 792 1.063649 GCTAACGACGATCGAGGCA 59.936 57.895 24.34 6.56 43.74 4.75
776 793 1.657794 GGCTAACGACGATCGAGGC 60.658 63.158 24.34 16.52 43.74 4.70
777 794 4.610844 GGCTAACGACGATCGAGG 57.389 61.111 24.34 14.99 43.74 4.63
812 2425 2.766313 AGCAAACGTACAGCAGATTCA 58.234 42.857 9.08 0.00 0.00 2.57
848 2461 0.308684 CATGCGTACACATGGATGCC 59.691 55.000 14.81 0.00 43.05 4.40
853 2471 1.723273 CAGGCATGCGTACACATGG 59.277 57.895 21.99 5.35 46.14 3.66
880 2498 1.737793 GAAAATGATTGGCCGACGAGT 59.262 47.619 0.00 0.00 0.00 4.18
985 3358 2.798847 CGATCATACTGTGCAGTGGATG 59.201 50.000 18.98 13.92 42.52 3.51
986 3359 2.695147 TCGATCATACTGTGCAGTGGAT 59.305 45.455 14.44 15.33 42.52 3.41
987 3360 2.099405 TCGATCATACTGTGCAGTGGA 58.901 47.619 14.44 11.76 42.52 4.02
988 3361 2.584492 TCGATCATACTGTGCAGTGG 57.416 50.000 14.44 7.18 42.52 4.00
989 3362 2.723143 CGATCGATCATACTGTGCAGTG 59.277 50.000 24.40 0.25 42.52 3.66
990 3363 2.618709 TCGATCGATCATACTGTGCAGT 59.381 45.455 24.40 9.90 45.02 4.40
991 3364 3.232771 CTCGATCGATCATACTGTGCAG 58.767 50.000 24.40 4.90 0.00 4.41
992 3365 2.605580 GCTCGATCGATCATACTGTGCA 60.606 50.000 24.40 0.00 0.00 4.57
993 3366 1.982223 GCTCGATCGATCATACTGTGC 59.018 52.381 24.40 15.29 0.00 4.57
994 3367 3.487536 GAGCTCGATCGATCATACTGTG 58.512 50.000 24.40 9.94 0.00 3.66
995 3368 2.486203 GGAGCTCGATCGATCATACTGT 59.514 50.000 24.40 4.13 0.00 3.55
996 3369 2.485814 TGGAGCTCGATCGATCATACTG 59.514 50.000 24.40 6.07 0.00 2.74
997 3370 2.784347 TGGAGCTCGATCGATCATACT 58.216 47.619 24.40 16.78 0.00 2.12
998 3371 3.119673 ACATGGAGCTCGATCGATCATAC 60.120 47.826 24.40 12.49 0.00 2.39
999 3372 3.084786 ACATGGAGCTCGATCGATCATA 58.915 45.455 24.40 11.24 0.00 2.15
1110 3512 0.464036 TGGTGATCGTAGGATGTGGC 59.536 55.000 1.92 0.00 31.51 5.01
1113 3544 1.070758 GCCATGGTGATCGTAGGATGT 59.929 52.381 14.67 0.00 31.51 3.06
1114 3545 1.345741 AGCCATGGTGATCGTAGGATG 59.654 52.381 14.67 0.00 31.51 3.51
1115 3546 1.722034 AGCCATGGTGATCGTAGGAT 58.278 50.000 14.67 0.00 34.96 3.24
1116 3547 1.412710 GAAGCCATGGTGATCGTAGGA 59.587 52.381 14.67 0.00 0.00 2.94
1117 3548 1.414181 AGAAGCCATGGTGATCGTAGG 59.586 52.381 14.67 0.00 0.00 3.18
1118 3549 2.898729 AGAAGCCATGGTGATCGTAG 57.101 50.000 14.67 0.00 0.00 3.51
1119 3550 2.766263 AGAAGAAGCCATGGTGATCGTA 59.234 45.455 14.67 0.00 0.00 3.43
1120 3551 1.556911 AGAAGAAGCCATGGTGATCGT 59.443 47.619 14.67 7.60 0.00 3.73
1121 3552 2.322355 AGAAGAAGCCATGGTGATCG 57.678 50.000 14.67 0.00 0.00 3.69
1141 3572 4.742649 AGCAGCCGACGGAGAGGA 62.743 66.667 20.50 0.00 0.00 3.71
1431 3872 0.598562 GAGACACCTTCTCGCTGTCA 59.401 55.000 3.26 0.00 41.63 3.58
1698 4139 1.992277 GGCCAGGAAGCTGAGGAGA 60.992 63.158 0.00 0.00 0.00 3.71
2233 4687 4.097892 GGAAGGAAACAAACAGCTTGAGAA 59.902 41.667 0.00 0.00 38.50 2.87
2343 4798 5.679638 GCACAACCATGTATTTCTGGATTCC 60.680 44.000 0.00 0.00 37.82 3.01
2435 4892 4.609301 TCCATTATAGTTTTGGCCAGCTT 58.391 39.130 5.11 0.00 0.00 3.74
2448 4905 6.268825 ACTAGTGGCACGTATCCATTATAG 57.731 41.667 12.71 14.20 35.81 1.31
2451 4908 3.319972 GGACTAGTGGCACGTATCCATTA 59.680 47.826 23.63 10.42 35.81 1.90
2460 4917 1.154016 CTCGTGGACTAGTGGCACG 60.154 63.158 12.71 0.00 40.17 5.34
2461 4918 0.317479 AACTCGTGGACTAGTGGCAC 59.683 55.000 10.29 10.29 0.00 5.01
2469 4926 0.109086 CATCGCTCAACTCGTGGACT 60.109 55.000 0.00 0.00 0.00 3.85
2480 4937 2.161410 GCACAAATGTTACCATCGCTCA 59.839 45.455 0.00 0.00 0.00 4.26
2483 4940 2.627863 TGCACAAATGTTACCATCGC 57.372 45.000 0.00 0.00 0.00 4.58
2525 4982 3.054213 ACGGGCCCTTTTGCTAGTAATAA 60.054 43.478 22.43 0.00 0.00 1.40
2550 5007 5.694006 CACAATTTTCTTATCCCGTTGCAAA 59.306 36.000 0.00 0.00 0.00 3.68
2561 5018 9.603921 CTTATTTGATGGCCACAATTTTCTTAT 57.396 29.630 8.16 6.06 0.00 1.73
2594 5051 8.621532 TTGTTGCAGGATAGATATTATGTTCC 57.378 34.615 0.00 0.00 0.00 3.62
2672 5579 3.877508 CTCAACTTCAGGTCGGTCTTTTT 59.122 43.478 0.00 0.00 0.00 1.94
2673 5580 3.118371 ACTCAACTTCAGGTCGGTCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
2675 5582 2.040178 ACTCAACTTCAGGTCGGTCTT 58.960 47.619 0.00 0.00 0.00 3.01
2748 5655 7.736893 ACAGAGTTTCTTACCAACTATTGAGT 58.263 34.615 0.00 0.00 34.49 3.41
2772 5679 9.691362 TTTACATGCCTTTTCTCTAATGAAAAC 57.309 29.630 0.00 0.00 39.92 2.43
2777 5684 9.696917 AAAAGTTTACATGCCTTTTCTCTAATG 57.303 29.630 0.00 0.00 34.25 1.90
2802 5710 6.472887 AGCTGATAGCACCTGTTAACTTAAA 58.527 36.000 7.22 0.00 45.56 1.52
2844 5752 3.576078 ACCAACTCAATCACAGGTTGA 57.424 42.857 0.00 0.00 40.74 3.18
2845 5753 4.216257 CCTAACCAACTCAATCACAGGTTG 59.784 45.833 0.00 0.00 39.49 3.77
2846 5754 4.141251 ACCTAACCAACTCAATCACAGGTT 60.141 41.667 0.00 0.00 41.74 3.50
2847 5755 3.394606 ACCTAACCAACTCAATCACAGGT 59.605 43.478 0.00 0.00 0.00 4.00
2848 5756 3.753272 CACCTAACCAACTCAATCACAGG 59.247 47.826 0.00 0.00 0.00 4.00
2849 5757 3.753272 CCACCTAACCAACTCAATCACAG 59.247 47.826 0.00 0.00 0.00 3.66
2850 5758 3.392947 TCCACCTAACCAACTCAATCACA 59.607 43.478 0.00 0.00 0.00 3.58
2851 5759 3.751698 GTCCACCTAACCAACTCAATCAC 59.248 47.826 0.00 0.00 0.00 3.06
2852 5760 3.392947 TGTCCACCTAACCAACTCAATCA 59.607 43.478 0.00 0.00 0.00 2.57
2853 5761 4.003648 CTGTCCACCTAACCAACTCAATC 58.996 47.826 0.00 0.00 0.00 2.67
2854 5762 3.394606 ACTGTCCACCTAACCAACTCAAT 59.605 43.478 0.00 0.00 0.00 2.57
2855 5763 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
2856 5764 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
2857 5765 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
2858 5766 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
2859 5767 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
2860 5768 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
2861 5769 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
2862 5770 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
2863 5771 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
2878 5786 0.988832 TCCTGGTGTGTTGGGGATAC 59.011 55.000 0.00 0.00 0.00 2.24
2879 5787 1.979809 ATCCTGGTGTGTTGGGGATA 58.020 50.000 0.00 0.00 35.34 2.59
2880 5788 1.005924 GAATCCTGGTGTGTTGGGGAT 59.994 52.381 0.00 0.00 38.29 3.85
2881 5789 0.404040 GAATCCTGGTGTGTTGGGGA 59.596 55.000 0.00 0.00 0.00 4.81
2882 5790 0.112218 TGAATCCTGGTGTGTTGGGG 59.888 55.000 0.00 0.00 0.00 4.96
2883 5791 1.993956 TTGAATCCTGGTGTGTTGGG 58.006 50.000 0.00 0.00 0.00 4.12
2884 5792 4.178545 GATTTGAATCCTGGTGTGTTGG 57.821 45.455 0.00 0.00 0.00 3.77
2896 5804 1.064654 GCGAGCACCAGGATTTGAATC 59.935 52.381 0.00 0.00 34.66 2.52
2897 5805 1.098050 GCGAGCACCAGGATTTGAAT 58.902 50.000 0.00 0.00 0.00 2.57
2898 5806 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
2899 5807 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
2900 5808 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
2901 5809 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
2902 5810 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
2903 5811 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
2904 5812 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
2905 5813 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
2906 5814 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
2907 5815 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
2908 5816 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
2909 5817 1.869767 CTCCAGGAATAATGCGAGCAC 59.130 52.381 0.00 0.00 0.00 4.40
2910 5818 1.202687 CCTCCAGGAATAATGCGAGCA 60.203 52.381 0.00 0.00 37.39 4.26
2911 5819 1.202698 ACCTCCAGGAATAATGCGAGC 60.203 52.381 0.00 0.00 38.94 5.03
2912 5820 2.487934 CACCTCCAGGAATAATGCGAG 58.512 52.381 0.00 0.00 38.94 5.03
2913 5821 1.475034 GCACCTCCAGGAATAATGCGA 60.475 52.381 0.00 0.00 38.94 5.10
2914 5822 0.947244 GCACCTCCAGGAATAATGCG 59.053 55.000 0.00 0.00 38.94 4.73
2915 5823 2.225467 GAGCACCTCCAGGAATAATGC 58.775 52.381 0.00 0.00 38.94 3.56
2916 5824 3.565764 TGAGCACCTCCAGGAATAATG 57.434 47.619 0.00 0.00 38.94 1.90
2917 5825 4.288105 CCTATGAGCACCTCCAGGAATAAT 59.712 45.833 0.00 0.00 35.18 1.28
2918 5826 3.648067 CCTATGAGCACCTCCAGGAATAA 59.352 47.826 0.00 0.00 35.18 1.40
2919 5827 3.242867 CCTATGAGCACCTCCAGGAATA 58.757 50.000 0.00 0.00 35.18 1.75
2920 5828 2.053244 CCTATGAGCACCTCCAGGAAT 58.947 52.381 0.00 0.00 35.18 3.01
2921 5829 1.500474 CCTATGAGCACCTCCAGGAA 58.500 55.000 0.00 0.00 35.18 3.36
2922 5830 0.399091 CCCTATGAGCACCTCCAGGA 60.399 60.000 0.00 0.00 35.18 3.86
2923 5831 1.414061 CCCCTATGAGCACCTCCAGG 61.414 65.000 0.00 0.00 42.17 4.45
2924 5832 0.692419 ACCCCTATGAGCACCTCCAG 60.692 60.000 0.00 0.00 0.00 3.86
2925 5833 0.639943 TACCCCTATGAGCACCTCCA 59.360 55.000 0.00 0.00 0.00 3.86
2926 5834 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
2927 5835 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
2928 5836 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
2929 5837 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
2930 5838 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
2931 5839 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
2932 5840 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
2933 5841 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
2934 5842 0.043485 TGCACACCCTACCCCTATGA 59.957 55.000 0.00 0.00 0.00 2.15
2935 5843 1.140312 ATGCACACCCTACCCCTATG 58.860 55.000 0.00 0.00 0.00 2.23
2936 5844 1.140312 CATGCACACCCTACCCCTAT 58.860 55.000 0.00 0.00 0.00 2.57
2937 5845 0.252974 ACATGCACACCCTACCCCTA 60.253 55.000 0.00 0.00 0.00 3.53
2938 5846 1.541368 ACATGCACACCCTACCCCT 60.541 57.895 0.00 0.00 0.00 4.79
2939 5847 1.077716 GACATGCACACCCTACCCC 60.078 63.158 0.00 0.00 0.00 4.95
2940 5848 0.392998 CAGACATGCACACCCTACCC 60.393 60.000 0.00 0.00 0.00 3.69
2941 5849 3.159298 CAGACATGCACACCCTACC 57.841 57.895 0.00 0.00 0.00 3.18
2951 5859 4.897816 CATCCCTATGAACGCAGACATGC 61.898 52.174 0.00 0.00 41.31 4.06
2952 5860 2.602257 TCCCTATGAACGCAGACATG 57.398 50.000 0.00 0.00 32.21 3.21
2953 5861 2.700371 TCATCCCTATGAACGCAGACAT 59.300 45.455 0.00 0.00 39.20 3.06
2954 5862 2.101415 CTCATCCCTATGAACGCAGACA 59.899 50.000 0.00 0.00 41.57 3.41
2955 5863 2.101582 ACTCATCCCTATGAACGCAGAC 59.898 50.000 0.00 0.00 41.57 3.51
2956 5864 2.101415 CACTCATCCCTATGAACGCAGA 59.899 50.000 0.00 0.00 41.57 4.26
2957 5865 2.159043 ACACTCATCCCTATGAACGCAG 60.159 50.000 0.00 0.00 41.57 5.18
2958 5866 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
2959 5867 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
2960 5868 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
2961 5869 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
2962 5870 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
2963 5871 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
2964 5872 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
2965 5873 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
2966 5874 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
2967 5875 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
2968 5876 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
2969 5877 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
2970 5878 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
2971 5879 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
2972 5880 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
2973 5881 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
2974 5882 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
2975 5883 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
2976 5884 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
2977 5885 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
2978 5886 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
2979 5887 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
2980 5888 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
2984 5892 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
2985 5893 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
2986 5894 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
2987 5895 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
2988 5896 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
2989 5897 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
2990 5898 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
2991 5899 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
2992 5900 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
2993 5901 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
2994 5902 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
2995 5903 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
2996 5904 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
2997 5905 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
2998 5906 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
3024 5932 2.459644 TGGCCATGATGCTAGCTTTTT 58.540 42.857 17.23 0.00 0.00 1.94
3025 5933 2.148446 TGGCCATGATGCTAGCTTTT 57.852 45.000 17.23 0.21 0.00 2.27
3026 5934 2.158505 AGATGGCCATGATGCTAGCTTT 60.159 45.455 26.56 3.07 34.65 3.51
3027 5935 1.424302 AGATGGCCATGATGCTAGCTT 59.576 47.619 26.56 9.95 34.65 3.74
3028 5936 1.003349 GAGATGGCCATGATGCTAGCT 59.997 52.381 26.56 11.35 41.38 3.32
3029 5937 1.003349 AGAGATGGCCATGATGCTAGC 59.997 52.381 26.56 8.10 0.00 3.42
3030 5938 2.701107 CAGAGATGGCCATGATGCTAG 58.299 52.381 26.56 6.34 0.00 3.42
3031 5939 1.271217 GCAGAGATGGCCATGATGCTA 60.271 52.381 26.56 0.00 0.00 3.49
3032 5940 0.537600 GCAGAGATGGCCATGATGCT 60.538 55.000 26.56 14.34 0.00 3.79
3152 6067 3.105937 GTTTGTCGACCTTTGTGCTTTC 58.894 45.455 14.12 0.00 0.00 2.62
3159 6074 3.479505 TTGTGTGTTTGTCGACCTTTG 57.520 42.857 14.12 0.00 0.00 2.77
3165 6080 2.420722 GGTCCTTTTGTGTGTTTGTCGA 59.579 45.455 0.00 0.00 0.00 4.20
3178 6093 6.252995 TGCTTGGTTATAGATTGGTCCTTTT 58.747 36.000 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.