Multiple sequence alignment - TraesCS3A01G510800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G510800 chr3A 100.000 2404 0 0 1 2404 730618190 730620593 0.000000e+00 4440.0
1 TraesCS3A01G510800 chr3A 92.873 449 29 2 1949 2396 730626090 730626536 0.000000e+00 649.0
2 TraesCS3A01G510800 chr3A 86.143 433 23 14 173 578 718424766 718424344 1.320000e-117 433.0
3 TraesCS3A01G510800 chr3A 87.786 262 25 7 1648 1902 647591039 647591300 1.400000e-77 300.0
4 TraesCS3A01G510800 chr3A 81.098 164 16 8 173 334 718424584 718424434 1.510000e-22 117.0
5 TraesCS3A01G510800 chr3A 90.909 44 4 0 1905 1948 102291687 102291730 2.580000e-05 60.2
6 TraesCS3A01G510800 chr3A 100.000 28 0 0 436 463 730618469 730618496 4.000000e-03 52.8
7 TraesCS3A01G510800 chr3A 100.000 28 0 0 280 307 730618625 730618652 4.000000e-03 52.8
8 TraesCS3A01G510800 chr3B 92.045 704 36 8 814 1503 808028743 808029440 0.000000e+00 972.0
9 TraesCS3A01G510800 chr3B 88.123 261 25 6 1648 1902 295961809 295962069 3.000000e-79 305.0
10 TraesCS3A01G510800 chr3B 90.476 105 9 1 713 816 808028378 808028482 1.160000e-28 137.0
11 TraesCS3A01G510800 chr3B 100.000 34 0 0 1503 1536 808030830 808030863 2.000000e-06 63.9
12 TraesCS3A01G510800 chr3B 100.000 33 0 0 1916 1948 773552978 773553010 7.180000e-06 62.1
13 TraesCS3A01G510800 chr5D 91.778 450 30 6 1948 2395 52052333 52052777 9.440000e-174 619.0
14 TraesCS3A01G510800 chr5D 89.474 247 20 6 1648 1888 52051693 52051939 8.350000e-80 307.0
15 TraesCS3A01G510800 chr5A 89.800 451 38 5 1948 2396 453531075 453530631 2.680000e-159 571.0
16 TraesCS3A01G510800 chr5A 87.356 261 27 5 1648 1902 456491221 456491481 6.500000e-76 294.0
17 TraesCS3A01G510800 chr5A 100.000 34 0 0 1915 1948 564825371 564825338 2.000000e-06 63.9
18 TraesCS3A01G510800 chr2D 88.444 450 45 4 1948 2395 575682821 575683265 9.780000e-149 536.0
19 TraesCS3A01G510800 chr2D 87.778 450 49 3 1948 2396 608866880 608866436 2.740000e-144 521.0
20 TraesCS3A01G510800 chr2D 87.528 449 53 2 1948 2395 490553637 490553191 1.270000e-142 516.0
21 TraesCS3A01G510800 chr2D 100.000 33 0 0 1916 1948 586427609 586427641 7.180000e-06 62.1
22 TraesCS3A01G510800 chr3D 88.419 449 40 5 1948 2395 9639824 9639387 4.550000e-147 531.0
23 TraesCS3A01G510800 chr3D 87.405 262 26 7 1651 1905 85829935 85829674 6.500000e-76 294.0
24 TraesCS3A01G510800 chr1A 87.555 458 54 2 1948 2404 302578121 302577666 5.890000e-146 527.0
25 TraesCS3A01G510800 chr7D 87.555 458 45 5 1948 2404 23108246 23107800 9.850000e-144 520.0
26 TraesCS3A01G510800 chr7A 87.097 434 24 11 173 578 434167694 434167265 1.680000e-126 462.0
27 TraesCS3A01G510800 chr7A 82.317 164 13 7 173 334 434167504 434167355 6.980000e-26 128.0
28 TraesCS3A01G510800 chr4B 90.000 250 17 3 1643 1886 38635770 38635523 1.390000e-82 316.0
29 TraesCS3A01G510800 chr1D 87.687 268 27 1 1644 1905 444199379 444199112 8.350000e-80 307.0
30 TraesCS3A01G510800 chr1D 88.168 262 24 7 1648 1902 432654020 432654281 3.000000e-79 305.0
31 TraesCS3A01G510800 chr6A 86.182 275 31 5 1648 1915 563724961 563725235 8.410000e-75 291.0
32 TraesCS3A01G510800 chr2A 94.798 173 7 1 1 173 119008735 119008565 3.940000e-68 268.0
33 TraesCS3A01G510800 chr6B 100.000 33 0 0 1916 1948 649869312 649869344 7.180000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G510800 chr3A 730618190 730620593 2403 False 1515.200000 4440 100.000000 1 2404 3 chr3A.!!$F4 2403
1 TraesCS3A01G510800 chr3B 808028378 808030863 2485 False 390.966667 972 94.173667 713 1536 3 chr3B.!!$F3 823
2 TraesCS3A01G510800 chr5D 52051693 52052777 1084 False 463.000000 619 90.626000 1648 2395 2 chr5D.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.035881 TGGCTGAGAGAAAGCAGTGG 59.964 55.0 0.0 0.0 42.69 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 3237 0.034767 TTTCTCGGGACTCGGCTAGA 60.035 55.0 0.0 0.0 39.77 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.491045 AAGAGAAGGAGGATAAGATAAGAAGG 57.509 38.462 0.00 0.00 0.00 3.46
26 27 7.831955 AGAGAAGGAGGATAAGATAAGAAGGA 58.168 38.462 0.00 0.00 0.00 3.36
27 28 8.293216 AGAGAAGGAGGATAAGATAAGAAGGAA 58.707 37.037 0.00 0.00 0.00 3.36
28 29 8.491045 AGAAGGAGGATAAGATAAGAAGGAAG 57.509 38.462 0.00 0.00 0.00 3.46
29 30 7.512402 AGAAGGAGGATAAGATAAGAAGGAAGG 59.488 40.741 0.00 0.00 0.00 3.46
30 31 6.939617 AGGAGGATAAGATAAGAAGGAAGGA 58.060 40.000 0.00 0.00 0.00 3.36
31 32 7.374271 AGGAGGATAAGATAAGAAGGAAGGAA 58.626 38.462 0.00 0.00 0.00 3.36
32 33 8.022062 AGGAGGATAAGATAAGAAGGAAGGAAT 58.978 37.037 0.00 0.00 0.00 3.01
33 34 8.100164 GGAGGATAAGATAAGAAGGAAGGAATG 58.900 40.741 0.00 0.00 0.00 2.67
34 35 7.983363 AGGATAAGATAAGAAGGAAGGAATGG 58.017 38.462 0.00 0.00 0.00 3.16
35 36 6.657117 GGATAAGATAAGAAGGAAGGAATGGC 59.343 42.308 0.00 0.00 0.00 4.40
36 37 5.723860 AAGATAAGAAGGAAGGAATGGCT 57.276 39.130 0.00 0.00 0.00 4.75
37 38 5.046288 AGATAAGAAGGAAGGAATGGCTG 57.954 43.478 0.00 0.00 0.00 4.85
38 39 4.723789 AGATAAGAAGGAAGGAATGGCTGA 59.276 41.667 0.00 0.00 0.00 4.26
39 40 3.362870 AAGAAGGAAGGAATGGCTGAG 57.637 47.619 0.00 0.00 0.00 3.35
40 41 2.555664 AGAAGGAAGGAATGGCTGAGA 58.444 47.619 0.00 0.00 0.00 3.27
41 42 2.504996 AGAAGGAAGGAATGGCTGAGAG 59.495 50.000 0.00 0.00 0.00 3.20
42 43 2.260639 AGGAAGGAATGGCTGAGAGA 57.739 50.000 0.00 0.00 0.00 3.10
43 44 2.555664 AGGAAGGAATGGCTGAGAGAA 58.444 47.619 0.00 0.00 0.00 2.87
44 45 2.915604 AGGAAGGAATGGCTGAGAGAAA 59.084 45.455 0.00 0.00 0.00 2.52
45 46 3.054508 AGGAAGGAATGGCTGAGAGAAAG 60.055 47.826 0.00 0.00 0.00 2.62
46 47 2.416680 AGGAATGGCTGAGAGAAAGC 57.583 50.000 0.00 0.00 40.06 3.51
47 48 1.632409 AGGAATGGCTGAGAGAAAGCA 59.368 47.619 0.00 0.00 42.69 3.91
48 49 2.015587 GGAATGGCTGAGAGAAAGCAG 58.984 52.381 0.00 0.00 42.69 4.24
49 50 2.617532 GGAATGGCTGAGAGAAAGCAGT 60.618 50.000 0.00 0.00 42.69 4.40
50 51 2.110901 ATGGCTGAGAGAAAGCAGTG 57.889 50.000 0.00 0.00 42.69 3.66
51 52 0.035881 TGGCTGAGAGAAAGCAGTGG 59.964 55.000 0.00 0.00 42.69 4.00
52 53 0.036022 GGCTGAGAGAAAGCAGTGGT 59.964 55.000 0.00 0.00 42.69 4.16
53 54 1.155042 GCTGAGAGAAAGCAGTGGTG 58.845 55.000 0.00 0.00 40.52 4.17
54 55 1.805869 CTGAGAGAAAGCAGTGGTGG 58.194 55.000 0.00 0.00 0.00 4.61
55 56 0.397941 TGAGAGAAAGCAGTGGTGGG 59.602 55.000 0.00 0.00 0.00 4.61
56 57 0.398318 GAGAGAAAGCAGTGGTGGGT 59.602 55.000 0.00 0.00 0.00 4.51
57 58 0.109342 AGAGAAAGCAGTGGTGGGTG 59.891 55.000 0.00 0.00 0.00 4.61
58 59 0.890996 GAGAAAGCAGTGGTGGGTGG 60.891 60.000 0.00 0.00 0.00 4.61
59 60 1.150536 GAAAGCAGTGGTGGGTGGA 59.849 57.895 0.00 0.00 0.00 4.02
60 61 0.890996 GAAAGCAGTGGTGGGTGGAG 60.891 60.000 0.00 0.00 0.00 3.86
61 62 1.352622 AAAGCAGTGGTGGGTGGAGA 61.353 55.000 0.00 0.00 0.00 3.71
62 63 1.352622 AAGCAGTGGTGGGTGGAGAA 61.353 55.000 0.00 0.00 0.00 2.87
63 64 1.302832 GCAGTGGTGGGTGGAGAAG 60.303 63.158 0.00 0.00 0.00 2.85
64 65 1.376466 CAGTGGTGGGTGGAGAAGG 59.624 63.158 0.00 0.00 0.00 3.46
65 66 1.847968 AGTGGTGGGTGGAGAAGGG 60.848 63.158 0.00 0.00 0.00 3.95
66 67 1.846124 GTGGTGGGTGGAGAAGGGA 60.846 63.158 0.00 0.00 0.00 4.20
67 68 1.073319 TGGTGGGTGGAGAAGGGAA 60.073 57.895 0.00 0.00 0.00 3.97
68 69 1.133809 TGGTGGGTGGAGAAGGGAAG 61.134 60.000 0.00 0.00 0.00 3.46
69 70 0.840722 GGTGGGTGGAGAAGGGAAGA 60.841 60.000 0.00 0.00 0.00 2.87
70 71 0.615850 GTGGGTGGAGAAGGGAAGAG 59.384 60.000 0.00 0.00 0.00 2.85
71 72 0.547712 TGGGTGGAGAAGGGAAGAGG 60.548 60.000 0.00 0.00 0.00 3.69
72 73 0.252742 GGGTGGAGAAGGGAAGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
73 74 1.657804 GGTGGAGAAGGGAAGAGGAA 58.342 55.000 0.00 0.00 0.00 3.36
74 75 1.985895 GGTGGAGAAGGGAAGAGGAAA 59.014 52.381 0.00 0.00 0.00 3.13
75 76 2.026729 GGTGGAGAAGGGAAGAGGAAAG 60.027 54.545 0.00 0.00 0.00 2.62
76 77 2.026729 GTGGAGAAGGGAAGAGGAAAGG 60.027 54.545 0.00 0.00 0.00 3.11
77 78 1.562008 GGAGAAGGGAAGAGGAAAGGG 59.438 57.143 0.00 0.00 0.00 3.95
78 79 2.552367 GAGAAGGGAAGAGGAAAGGGA 58.448 52.381 0.00 0.00 0.00 4.20
79 80 3.119319 GAGAAGGGAAGAGGAAAGGGAT 58.881 50.000 0.00 0.00 0.00 3.85
80 81 2.849318 AGAAGGGAAGAGGAAAGGGATG 59.151 50.000 0.00 0.00 0.00 3.51
81 82 2.668850 AGGGAAGAGGAAAGGGATGA 57.331 50.000 0.00 0.00 0.00 2.92
82 83 2.486716 AGGGAAGAGGAAAGGGATGAG 58.513 52.381 0.00 0.00 0.00 2.90
83 84 2.200955 GGGAAGAGGAAAGGGATGAGT 58.799 52.381 0.00 0.00 0.00 3.41
84 85 2.092699 GGGAAGAGGAAAGGGATGAGTG 60.093 54.545 0.00 0.00 0.00 3.51
85 86 2.092699 GGAAGAGGAAAGGGATGAGTGG 60.093 54.545 0.00 0.00 0.00 4.00
86 87 1.589414 AGAGGAAAGGGATGAGTGGG 58.411 55.000 0.00 0.00 0.00 4.61
87 88 1.081174 AGAGGAAAGGGATGAGTGGGA 59.919 52.381 0.00 0.00 0.00 4.37
88 89 1.488393 GAGGAAAGGGATGAGTGGGAG 59.512 57.143 0.00 0.00 0.00 4.30
89 90 1.081174 AGGAAAGGGATGAGTGGGAGA 59.919 52.381 0.00 0.00 0.00 3.71
90 91 1.488393 GGAAAGGGATGAGTGGGAGAG 59.512 57.143 0.00 0.00 0.00 3.20
91 92 2.472029 GAAAGGGATGAGTGGGAGAGA 58.528 52.381 0.00 0.00 0.00 3.10
92 93 1.872773 AAGGGATGAGTGGGAGAGAC 58.127 55.000 0.00 0.00 0.00 3.36
93 94 0.712979 AGGGATGAGTGGGAGAGACA 59.287 55.000 0.00 0.00 0.00 3.41
94 95 0.827368 GGGATGAGTGGGAGAGACAC 59.173 60.000 0.00 0.00 39.10 3.67
95 96 0.457851 GGATGAGTGGGAGAGACACG 59.542 60.000 0.00 0.00 43.41 4.49
96 97 0.179124 GATGAGTGGGAGAGACACGC 60.179 60.000 0.00 0.00 43.41 5.34
97 98 1.938657 ATGAGTGGGAGAGACACGCG 61.939 60.000 3.53 3.53 43.41 6.01
98 99 2.597805 AGTGGGAGAGACACGCGT 60.598 61.111 5.58 5.58 43.41 6.01
99 100 2.430921 GTGGGAGAGACACGCGTG 60.431 66.667 35.99 35.99 0.00 5.34
100 101 3.680786 TGGGAGAGACACGCGTGG 61.681 66.667 39.21 23.04 34.19 4.94
101 102 4.436998 GGGAGAGACACGCGTGGG 62.437 72.222 39.21 19.36 34.19 4.61
103 104 4.357947 GAGAGACACGCGTGGGCA 62.358 66.667 39.21 0.00 39.92 5.36
104 105 4.664677 AGAGACACGCGTGGGCAC 62.665 66.667 39.21 27.91 39.92 5.01
105 106 4.961511 GAGACACGCGTGGGCACA 62.962 66.667 39.21 0.00 39.92 4.57
106 107 4.314440 AGACACGCGTGGGCACAT 62.314 61.111 39.21 20.40 39.92 3.21
107 108 4.088762 GACACGCGTGGGCACATG 62.089 66.667 39.21 15.56 39.92 3.21
108 109 4.927782 ACACGCGTGGGCACATGT 62.928 61.111 39.21 16.26 39.92 3.21
109 110 4.388080 CACGCGTGGGCACATGTG 62.388 66.667 31.15 21.83 46.85 3.21
118 119 3.673484 GCACATGTGGCAAGCCGT 61.673 61.111 26.55 0.00 39.42 5.68
119 120 2.256158 CACATGTGGCAAGCCGTG 59.744 61.111 18.51 7.85 39.42 4.94
120 121 2.985282 ACATGTGGCAAGCCGTGG 60.985 61.111 6.60 0.00 39.42 4.94
121 122 3.751246 CATGTGGCAAGCCGTGGG 61.751 66.667 6.60 0.00 39.42 4.61
143 144 3.503363 GCTGGCGCACTGGATGTC 61.503 66.667 10.83 0.00 35.78 3.06
144 145 2.267006 CTGGCGCACTGGATGTCT 59.733 61.111 10.83 0.00 0.00 3.41
145 146 2.046988 TGGCGCACTGGATGTCTG 60.047 61.111 10.83 0.00 0.00 3.51
146 147 3.503363 GGCGCACTGGATGTCTGC 61.503 66.667 10.83 0.00 0.00 4.26
147 148 2.743538 GCGCACTGGATGTCTGCA 60.744 61.111 0.30 0.00 0.00 4.41
148 149 2.110967 GCGCACTGGATGTCTGCAT 61.111 57.895 0.30 0.00 38.18 3.96
155 156 3.728474 GATGTCTGCATCCGGCTG 58.272 61.111 0.00 0.00 44.26 4.85
156 157 1.144716 GATGTCTGCATCCGGCTGA 59.855 57.895 10.06 0.00 46.65 4.26
161 162 2.245159 TCTGCATCCGGCTGATTTAG 57.755 50.000 10.06 1.50 44.37 1.85
162 163 1.762370 TCTGCATCCGGCTGATTTAGA 59.238 47.619 10.06 3.89 44.37 2.10
163 164 2.141517 CTGCATCCGGCTGATTTAGAG 58.858 52.381 10.06 0.00 43.53 2.43
164 165 0.871057 GCATCCGGCTGATTTAGAGC 59.129 55.000 10.06 0.00 40.25 4.09
165 166 1.143305 CATCCGGCTGATTTAGAGCG 58.857 55.000 0.00 0.00 37.32 5.03
166 167 0.753262 ATCCGGCTGATTTAGAGCGT 59.247 50.000 0.00 0.00 37.32 5.07
167 168 0.535335 TCCGGCTGATTTAGAGCGTT 59.465 50.000 0.00 0.00 37.32 4.84
168 169 1.066430 TCCGGCTGATTTAGAGCGTTT 60.066 47.619 0.00 0.00 37.32 3.60
169 170 1.737793 CCGGCTGATTTAGAGCGTTTT 59.262 47.619 0.00 0.00 37.32 2.43
170 171 2.223044 CCGGCTGATTTAGAGCGTTTTC 60.223 50.000 0.00 0.00 37.32 2.29
171 172 2.223044 CGGCTGATTTAGAGCGTTTTCC 60.223 50.000 0.00 0.00 37.32 3.13
172 173 2.747446 GGCTGATTTAGAGCGTTTTCCA 59.253 45.455 0.00 0.00 37.32 3.53
173 174 3.378427 GGCTGATTTAGAGCGTTTTCCAT 59.622 43.478 0.00 0.00 37.32 3.41
174 175 4.574828 GGCTGATTTAGAGCGTTTTCCATA 59.425 41.667 0.00 0.00 37.32 2.74
175 176 5.239525 GGCTGATTTAGAGCGTTTTCCATAT 59.760 40.000 0.00 0.00 37.32 1.78
176 177 6.138761 GCTGATTTAGAGCGTTTTCCATATG 58.861 40.000 0.00 0.00 0.00 1.78
177 178 6.060028 TGATTTAGAGCGTTTTCCATATGC 57.940 37.500 0.00 0.00 0.00 3.14
178 179 5.822519 TGATTTAGAGCGTTTTCCATATGCT 59.177 36.000 0.00 0.00 40.43 3.79
179 180 6.318648 TGATTTAGAGCGTTTTCCATATGCTT 59.681 34.615 0.00 0.00 37.96 3.91
180 181 6.509418 TTTAGAGCGTTTTCCATATGCTTT 57.491 33.333 0.00 0.00 37.96 3.51
181 182 6.509418 TTAGAGCGTTTTCCATATGCTTTT 57.491 33.333 0.00 0.00 37.96 2.27
182 183 4.986622 AGAGCGTTTTCCATATGCTTTTC 58.013 39.130 0.00 0.00 37.96 2.29
183 184 4.458989 AGAGCGTTTTCCATATGCTTTTCA 59.541 37.500 0.00 0.00 37.96 2.69
184 185 4.485163 AGCGTTTTCCATATGCTTTTCAC 58.515 39.130 0.00 0.00 34.28 3.18
185 186 3.612423 GCGTTTTCCATATGCTTTTCACC 59.388 43.478 0.00 0.00 0.00 4.02
186 187 4.618227 GCGTTTTCCATATGCTTTTCACCT 60.618 41.667 0.00 0.00 0.00 4.00
187 188 5.469479 CGTTTTCCATATGCTTTTCACCTT 58.531 37.500 0.00 0.00 0.00 3.50
188 189 5.925969 CGTTTTCCATATGCTTTTCACCTTT 59.074 36.000 0.00 0.00 0.00 3.11
189 190 6.423604 CGTTTTCCATATGCTTTTCACCTTTT 59.576 34.615 0.00 0.00 0.00 2.27
190 191 7.042119 CGTTTTCCATATGCTTTTCACCTTTTT 60.042 33.333 0.00 0.00 0.00 1.94
222 223 2.905260 CGTGAACGTGACTGACTTTC 57.095 50.000 0.00 0.00 34.20 2.62
223 224 2.460918 CGTGAACGTGACTGACTTTCT 58.539 47.619 0.00 0.00 34.61 2.52
224 225 2.216488 CGTGAACGTGACTGACTTTCTG 59.784 50.000 0.00 0.00 34.61 3.02
225 226 3.187700 GTGAACGTGACTGACTTTCTGT 58.812 45.455 0.00 0.00 34.61 3.41
226 227 3.243177 GTGAACGTGACTGACTTTCTGTC 59.757 47.826 0.00 6.32 43.10 3.51
227 228 2.510768 ACGTGACTGACTTTCTGTCC 57.489 50.000 9.81 2.71 44.75 4.02
228 229 2.032620 ACGTGACTGACTTTCTGTCCT 58.967 47.619 9.81 0.00 44.75 3.85
229 230 2.034812 ACGTGACTGACTTTCTGTCCTC 59.965 50.000 9.81 4.14 44.75 3.71
230 231 2.608261 CGTGACTGACTTTCTGTCCTCC 60.608 54.545 9.81 0.11 44.75 4.30
231 232 2.630580 GTGACTGACTTTCTGTCCTCCT 59.369 50.000 9.81 0.00 44.75 3.69
232 233 3.070302 GTGACTGACTTTCTGTCCTCCTT 59.930 47.826 9.81 0.00 44.75 3.36
233 234 3.711704 TGACTGACTTTCTGTCCTCCTTT 59.288 43.478 9.81 0.00 44.75 3.11
234 235 4.164221 TGACTGACTTTCTGTCCTCCTTTT 59.836 41.667 9.81 0.00 44.75 2.27
235 236 5.117406 ACTGACTTTCTGTCCTCCTTTTT 57.883 39.130 0.00 0.00 44.75 1.94
263 264 7.642082 ACTTATATGAAGTACTTCTCCGTGT 57.358 36.000 30.47 20.04 40.14 4.49
264 265 7.705214 ACTTATATGAAGTACTTCTCCGTGTC 58.295 38.462 30.47 8.37 40.14 3.67
265 266 3.870633 ATGAAGTACTTCTCCGTGTCC 57.129 47.619 30.47 7.55 40.14 4.02
266 267 2.872732 TGAAGTACTTCTCCGTGTCCT 58.127 47.619 30.47 0.00 40.14 3.85
267 268 4.025040 TGAAGTACTTCTCCGTGTCCTA 57.975 45.455 30.47 8.68 40.14 2.94
268 269 4.597004 TGAAGTACTTCTCCGTGTCCTAT 58.403 43.478 30.47 0.00 40.14 2.57
269 270 5.748402 TGAAGTACTTCTCCGTGTCCTATA 58.252 41.667 30.47 8.02 40.14 1.31
270 271 6.363065 TGAAGTACTTCTCCGTGTCCTATAT 58.637 40.000 30.47 0.00 40.14 0.86
271 272 6.262496 TGAAGTACTTCTCCGTGTCCTATATG 59.738 42.308 30.47 0.00 40.14 1.78
272 273 5.071370 AGTACTTCTCCGTGTCCTATATGG 58.929 45.833 0.00 0.00 37.10 2.74
273 274 4.180377 ACTTCTCCGTGTCCTATATGGA 57.820 45.455 0.00 0.00 43.86 3.41
284 285 4.706842 TCCTATATGGAAGGTCCTTTGC 57.293 45.455 5.36 0.00 42.94 3.68
285 286 3.394606 TCCTATATGGAAGGTCCTTTGCC 59.605 47.826 5.36 3.92 42.94 4.52
286 287 2.755952 ATATGGAAGGTCCTTTGCCC 57.244 50.000 5.36 3.15 37.46 5.36
287 288 1.681229 TATGGAAGGTCCTTTGCCCT 58.319 50.000 5.36 0.00 37.46 5.19
288 289 0.786435 ATGGAAGGTCCTTTGCCCTT 59.214 50.000 5.36 0.00 43.72 3.95
289 290 0.560688 TGGAAGGTCCTTTGCCCTTT 59.439 50.000 5.36 0.00 41.13 3.11
290 291 1.062505 TGGAAGGTCCTTTGCCCTTTT 60.063 47.619 5.36 0.00 41.13 2.27
291 292 1.618837 GGAAGGTCCTTTGCCCTTTTC 59.381 52.381 5.36 0.00 41.13 2.29
292 293 1.618837 GAAGGTCCTTTGCCCTTTTCC 59.381 52.381 5.36 0.00 41.13 3.13
293 294 0.560688 AGGTCCTTTGCCCTTTTCCA 59.439 50.000 0.00 0.00 0.00 3.53
294 295 1.149923 AGGTCCTTTGCCCTTTTCCAT 59.850 47.619 0.00 0.00 0.00 3.41
295 296 1.550524 GGTCCTTTGCCCTTTTCCATC 59.449 52.381 0.00 0.00 0.00 3.51
296 297 1.550524 GTCCTTTGCCCTTTTCCATCC 59.449 52.381 0.00 0.00 0.00 3.51
297 298 1.432807 TCCTTTGCCCTTTTCCATCCT 59.567 47.619 0.00 0.00 0.00 3.24
298 299 2.652348 TCCTTTGCCCTTTTCCATCCTA 59.348 45.455 0.00 0.00 0.00 2.94
299 300 3.026694 CCTTTGCCCTTTTCCATCCTAG 58.973 50.000 0.00 0.00 0.00 3.02
300 301 2.143876 TTGCCCTTTTCCATCCTAGC 57.856 50.000 0.00 0.00 0.00 3.42
301 302 0.998928 TGCCCTTTTCCATCCTAGCA 59.001 50.000 0.00 0.00 0.00 3.49
302 303 1.340991 TGCCCTTTTCCATCCTAGCAC 60.341 52.381 0.00 0.00 0.00 4.40
303 304 1.340991 GCCCTTTTCCATCCTAGCACA 60.341 52.381 0.00 0.00 0.00 4.57
304 305 2.687914 GCCCTTTTCCATCCTAGCACAT 60.688 50.000 0.00 0.00 0.00 3.21
305 306 2.954318 CCCTTTTCCATCCTAGCACATG 59.046 50.000 0.00 0.00 0.00 3.21
306 307 3.371917 CCCTTTTCCATCCTAGCACATGA 60.372 47.826 0.00 0.00 0.00 3.07
307 308 4.272489 CCTTTTCCATCCTAGCACATGAA 58.728 43.478 0.00 0.00 0.00 2.57
308 309 4.096984 CCTTTTCCATCCTAGCACATGAAC 59.903 45.833 0.00 0.00 0.00 3.18
309 310 2.602257 TCCATCCTAGCACATGAACG 57.398 50.000 0.00 0.00 0.00 3.95
310 311 1.831106 TCCATCCTAGCACATGAACGT 59.169 47.619 0.00 0.00 0.00 3.99
311 312 1.935873 CCATCCTAGCACATGAACGTG 59.064 52.381 0.00 0.00 40.00 4.49
312 313 1.935873 CATCCTAGCACATGAACGTGG 59.064 52.381 0.00 0.00 37.37 4.94
313 314 0.391130 TCCTAGCACATGAACGTGGC 60.391 55.000 0.00 0.00 37.37 5.01
314 315 0.673333 CCTAGCACATGAACGTGGCA 60.673 55.000 0.00 0.00 37.37 4.92
315 316 0.723414 CTAGCACATGAACGTGGCAG 59.277 55.000 0.00 0.00 37.37 4.85
316 317 0.673333 TAGCACATGAACGTGGCAGG 60.673 55.000 5.50 5.50 37.37 4.85
317 318 2.562912 CACATGAACGTGGCAGGC 59.437 61.111 7.17 0.00 33.05 4.85
318 319 1.968017 CACATGAACGTGGCAGGCT 60.968 57.895 7.17 0.00 33.05 4.58
319 320 1.228245 ACATGAACGTGGCAGGCTT 60.228 52.632 7.17 1.06 0.00 4.35
320 321 1.237285 ACATGAACGTGGCAGGCTTC 61.237 55.000 7.17 10.53 0.00 3.86
321 322 1.675641 ATGAACGTGGCAGGCTTCC 60.676 57.895 7.17 0.00 0.00 3.46
322 323 2.032681 GAACGTGGCAGGCTTCCT 59.967 61.111 7.17 0.00 0.00 3.36
354 355 6.484818 AAAAGGCATTGCAATATTTGTGAC 57.515 33.333 12.53 1.88 0.00 3.67
355 356 5.410355 AAGGCATTGCAATATTTGTGACT 57.590 34.783 12.53 4.63 0.00 3.41
356 357 5.410355 AGGCATTGCAATATTTGTGACTT 57.590 34.783 12.53 0.00 0.00 3.01
357 358 5.797051 AGGCATTGCAATATTTGTGACTTT 58.203 33.333 12.53 0.00 0.00 2.66
358 359 6.232692 AGGCATTGCAATATTTGTGACTTTT 58.767 32.000 12.53 0.00 0.00 2.27
359 360 6.369615 AGGCATTGCAATATTTGTGACTTTTC 59.630 34.615 12.53 0.00 0.00 2.29
360 361 6.369615 GGCATTGCAATATTTGTGACTTTTCT 59.630 34.615 12.53 0.00 0.00 2.52
361 362 7.412237 GGCATTGCAATATTTGTGACTTTTCTC 60.412 37.037 12.53 0.00 0.00 2.87
362 363 7.116662 GCATTGCAATATTTGTGACTTTTCTCA 59.883 33.333 12.53 0.00 0.00 3.27
363 364 8.980610 CATTGCAATATTTGTGACTTTTCTCAA 58.019 29.630 12.53 0.00 34.23 3.02
364 365 8.939201 TTGCAATATTTGTGACTTTTCTCAAA 57.061 26.923 0.00 4.80 44.93 2.69
377 378 9.528018 TGACTTTTCTCAAATACATTTTTCACC 57.472 29.630 0.00 0.00 0.00 4.02
378 379 9.750125 GACTTTTCTCAAATACATTTTTCACCT 57.250 29.630 0.00 0.00 0.00 4.00
396 397 9.619316 TTTTCACCTTTTTCATCATAATACACG 57.381 29.630 0.00 0.00 0.00 4.49
397 398 8.554835 TTCACCTTTTTCATCATAATACACGA 57.445 30.769 0.00 0.00 0.00 4.35
398 399 8.554835 TCACCTTTTTCATCATAATACACGAA 57.445 30.769 0.00 0.00 0.00 3.85
399 400 8.447833 TCACCTTTTTCATCATAATACACGAAC 58.552 33.333 0.00 0.00 0.00 3.95
400 401 7.425309 CACCTTTTTCATCATAATACACGAACG 59.575 37.037 0.00 0.00 0.00 3.95
401 402 7.118680 ACCTTTTTCATCATAATACACGAACGT 59.881 33.333 0.00 0.00 0.00 3.99
410 411 4.027755 CACGAACGTGGCAGACTT 57.972 55.556 17.83 0.00 42.00 3.01
411 412 2.307363 CACGAACGTGGCAGACTTT 58.693 52.632 17.83 0.00 42.00 2.66
412 413 0.232303 CACGAACGTGGCAGACTTTC 59.768 55.000 17.83 0.00 42.00 2.62
413 414 0.104304 ACGAACGTGGCAGACTTTCT 59.896 50.000 0.00 0.00 31.98 2.52
414 415 1.338973 ACGAACGTGGCAGACTTTCTA 59.661 47.619 0.00 0.00 31.98 2.10
415 416 2.029290 ACGAACGTGGCAGACTTTCTAT 60.029 45.455 0.00 0.00 31.98 1.98
416 417 2.345641 CGAACGTGGCAGACTTTCTATG 59.654 50.000 0.00 0.00 31.98 2.23
417 418 3.326747 GAACGTGGCAGACTTTCTATGT 58.673 45.455 0.00 0.00 31.57 2.29
418 419 3.402628 ACGTGGCAGACTTTCTATGTT 57.597 42.857 0.00 0.00 0.00 2.71
419 420 3.326747 ACGTGGCAGACTTTCTATGTTC 58.673 45.455 0.00 0.00 0.00 3.18
420 421 2.673368 CGTGGCAGACTTTCTATGTTCC 59.327 50.000 0.00 0.00 0.00 3.62
421 422 3.617531 CGTGGCAGACTTTCTATGTTCCT 60.618 47.826 0.00 0.00 0.00 3.36
422 423 4.327680 GTGGCAGACTTTCTATGTTCCTT 58.672 43.478 0.00 0.00 0.00 3.36
423 424 4.762251 GTGGCAGACTTTCTATGTTCCTTT 59.238 41.667 0.00 0.00 0.00 3.11
424 425 5.241728 GTGGCAGACTTTCTATGTTCCTTTT 59.758 40.000 0.00 0.00 0.00 2.27
425 426 5.833131 TGGCAGACTTTCTATGTTCCTTTTT 59.167 36.000 0.00 0.00 0.00 1.94
452 453 6.731292 ATTATACTTTGCCCTTTTCCATCC 57.269 37.500 0.00 0.00 0.00 3.51
453 454 2.702270 ACTTTGCCCTTTTCCATCCT 57.298 45.000 0.00 0.00 0.00 3.24
454 455 3.825908 ACTTTGCCCTTTTCCATCCTA 57.174 42.857 0.00 0.00 0.00 2.94
455 456 3.701664 ACTTTGCCCTTTTCCATCCTAG 58.298 45.455 0.00 0.00 0.00 3.02
456 457 2.143876 TTGCCCTTTTCCATCCTAGC 57.856 50.000 0.00 0.00 0.00 3.42
457 458 0.998928 TGCCCTTTTCCATCCTAGCA 59.001 50.000 0.00 0.00 0.00 3.49
458 459 1.340991 TGCCCTTTTCCATCCTAGCAC 60.341 52.381 0.00 0.00 0.00 4.40
459 460 1.340991 GCCCTTTTCCATCCTAGCACA 60.341 52.381 0.00 0.00 0.00 4.57
460 461 2.687914 GCCCTTTTCCATCCTAGCACAT 60.688 50.000 0.00 0.00 0.00 3.21
461 462 2.954318 CCCTTTTCCATCCTAGCACATG 59.046 50.000 0.00 0.00 0.00 3.21
462 463 3.371917 CCCTTTTCCATCCTAGCACATGA 60.372 47.826 0.00 0.00 0.00 3.07
463 464 4.467769 CCTTTTCCATCCTAGCACATGAT 58.532 43.478 0.00 0.00 0.00 2.45
464 465 4.277672 CCTTTTCCATCCTAGCACATGATG 59.722 45.833 0.00 0.00 36.49 3.07
465 466 4.776435 TTTCCATCCTAGCACATGATGA 57.224 40.909 0.00 0.00 38.49 2.92
466 467 3.758755 TCCATCCTAGCACATGATGAC 57.241 47.619 0.00 0.00 38.49 3.06
467 468 3.040477 TCCATCCTAGCACATGATGACA 58.960 45.455 0.00 0.00 38.49 3.58
468 469 3.070590 TCCATCCTAGCACATGATGACAG 59.929 47.826 0.00 0.00 38.49 3.51
469 470 3.400255 CATCCTAGCACATGATGACAGG 58.600 50.000 0.00 4.77 38.49 4.00
470 471 1.764723 TCCTAGCACATGATGACAGGG 59.235 52.381 0.00 0.00 31.68 4.45
471 472 1.487976 CCTAGCACATGATGACAGGGT 59.512 52.381 0.00 0.00 31.68 4.34
472 473 2.092753 CCTAGCACATGATGACAGGGTT 60.093 50.000 0.00 0.00 31.68 4.11
473 474 2.119801 AGCACATGATGACAGGGTTC 57.880 50.000 0.00 0.00 31.68 3.62
474 475 1.632409 AGCACATGATGACAGGGTTCT 59.368 47.619 0.00 0.00 31.68 3.01
475 476 2.040813 AGCACATGATGACAGGGTTCTT 59.959 45.455 0.00 0.00 31.68 2.52
476 477 3.264193 AGCACATGATGACAGGGTTCTTA 59.736 43.478 0.00 0.00 31.68 2.10
477 478 4.080129 AGCACATGATGACAGGGTTCTTAT 60.080 41.667 0.00 0.00 31.68 1.73
478 479 4.036027 GCACATGATGACAGGGTTCTTATG 59.964 45.833 0.00 0.00 31.68 1.90
479 480 5.188434 CACATGATGACAGGGTTCTTATGT 58.812 41.667 0.00 0.00 31.68 2.29
480 481 5.649395 CACATGATGACAGGGTTCTTATGTT 59.351 40.000 0.00 0.00 31.68 2.71
481 482 6.151648 CACATGATGACAGGGTTCTTATGTTT 59.848 38.462 0.00 0.00 31.68 2.83
482 483 6.375455 ACATGATGACAGGGTTCTTATGTTTC 59.625 38.462 0.00 0.00 31.68 2.78
483 484 5.875224 TGATGACAGGGTTCTTATGTTTCA 58.125 37.500 0.00 0.00 0.00 2.69
484 485 6.303054 TGATGACAGGGTTCTTATGTTTCAA 58.697 36.000 0.00 0.00 0.00 2.69
485 486 6.775142 TGATGACAGGGTTCTTATGTTTCAAA 59.225 34.615 0.00 0.00 0.00 2.69
486 487 7.286546 TGATGACAGGGTTCTTATGTTTCAAAA 59.713 33.333 0.00 0.00 0.00 2.44
487 488 7.411486 TGACAGGGTTCTTATGTTTCAAAAA 57.589 32.000 0.00 0.00 0.00 1.94
536 537 9.474249 GTAACGTTGTCATCTTTAAATCTTAGC 57.526 33.333 11.99 0.00 0.00 3.09
537 538 7.073342 ACGTTGTCATCTTTAAATCTTAGCC 57.927 36.000 0.00 0.00 0.00 3.93
538 539 6.879458 ACGTTGTCATCTTTAAATCTTAGCCT 59.121 34.615 0.00 0.00 0.00 4.58
539 540 7.390718 ACGTTGTCATCTTTAAATCTTAGCCTT 59.609 33.333 0.00 0.00 0.00 4.35
540 541 8.237267 CGTTGTCATCTTTAAATCTTAGCCTTT 58.763 33.333 0.00 0.00 0.00 3.11
650 651 9.592196 AAATTATAGATATTGTGCATTGGGAGT 57.408 29.630 0.00 0.00 0.00 3.85
651 652 7.984422 TTATAGATATTGTGCATTGGGAGTG 57.016 36.000 0.00 0.00 0.00 3.51
652 653 2.954318 AGATATTGTGCATTGGGAGTGC 59.046 45.455 0.00 0.00 42.81 4.40
653 654 1.473258 TATTGTGCATTGGGAGTGCC 58.527 50.000 0.00 0.00 41.83 5.01
671 672 4.249638 TGCCCTAGCATTAATTGTTCCT 57.750 40.909 0.00 0.00 46.52 3.36
672 673 5.381184 TGCCCTAGCATTAATTGTTCCTA 57.619 39.130 0.00 0.00 46.52 2.94
673 674 5.952387 TGCCCTAGCATTAATTGTTCCTAT 58.048 37.500 0.00 0.00 46.52 2.57
674 675 6.372931 TGCCCTAGCATTAATTGTTCCTATT 58.627 36.000 0.00 0.00 46.52 1.73
675 676 6.838612 TGCCCTAGCATTAATTGTTCCTATTT 59.161 34.615 0.00 0.00 46.52 1.40
676 677 8.001875 TGCCCTAGCATTAATTGTTCCTATTTA 58.998 33.333 0.00 0.00 46.52 1.40
677 678 8.856103 GCCCTAGCATTAATTGTTCCTATTTAA 58.144 33.333 0.00 0.00 39.53 1.52
702 703 8.885693 ATTAATAAAGCCCTCTTGTTTCTTCT 57.114 30.769 0.00 0.00 31.78 2.85
703 704 8.706322 TTAATAAAGCCCTCTTGTTTCTTCTT 57.294 30.769 0.00 0.00 31.78 2.52
704 705 7.603180 AATAAAGCCCTCTTGTTTCTTCTTT 57.397 32.000 0.00 0.00 31.78 2.52
705 706 5.939764 AAAGCCCTCTTGTTTCTTCTTTT 57.060 34.783 0.00 0.00 31.78 2.27
706 707 5.939764 AAGCCCTCTTGTTTCTTCTTTTT 57.060 34.783 0.00 0.00 0.00 1.94
789 790 5.938125 ACGTAGTCAATGTTTGCCTATTTCT 59.062 36.000 0.00 0.00 29.74 2.52
800 801 5.897377 TTGCCTATTTCTAAAGCAAGGAC 57.103 39.130 0.00 0.00 38.45 3.85
808 809 7.872113 ATTTCTAAAGCAAGGACCTTAGATG 57.128 36.000 6.38 0.00 0.00 2.90
910 1175 5.968676 TCCATATGCTACCACCTTAACTT 57.031 39.130 0.00 0.00 0.00 2.66
973 1238 3.274288 CTTCCCCACAACTCAGATTAGC 58.726 50.000 0.00 0.00 0.00 3.09
981 1246 4.278170 CACAACTCAGATTAGCAAACCCAA 59.722 41.667 0.00 0.00 0.00 4.12
1021 1286 0.249657 GGCTCCTAAGATCGCCAGTG 60.250 60.000 2.54 0.00 42.06 3.66
1041 1306 3.002246 GTGCCATGGTCATGTACGTATTG 59.998 47.826 14.67 0.02 37.11 1.90
1091 1356 2.903135 AGTATGGGGCTAAGCAGAGATC 59.097 50.000 0.00 0.00 0.00 2.75
1123 1388 0.179073 ATCGAGGTGTATGCTGGTGC 60.179 55.000 0.00 0.00 40.20 5.01
1153 1418 9.494271 TGCTTCAAGATAGATGATATTTGTACC 57.506 33.333 0.00 0.00 0.00 3.34
1160 1425 4.632153 AGATGATATTTGTACCCGAGTGC 58.368 43.478 0.00 0.00 0.00 4.40
1168 1433 1.145803 GTACCCGAGTGCTTCACAAC 58.854 55.000 0.00 0.00 36.74 3.32
1176 1441 3.241553 CGAGTGCTTCACAACATCTATCG 59.758 47.826 0.00 0.00 36.74 2.92
1281 1546 2.286595 CCAGATTGCATCGGTCGAATTG 60.287 50.000 0.00 0.00 0.00 2.32
1392 1657 2.100631 GGTCCCGATGAACGTGCAG 61.101 63.158 1.02 0.00 40.78 4.41
1413 1678 5.278463 GCAGAAAAACAGTGAGCCTTGAATA 60.278 40.000 0.00 0.00 0.00 1.75
1439 1704 8.588290 TGTAACTAGCATGGACCAATAAAAAT 57.412 30.769 0.00 0.00 0.00 1.82
1536 3204 2.115427 TGTTGATTATCGGGCTGGAGA 58.885 47.619 0.00 0.00 0.00 3.71
1537 3205 2.705658 TGTTGATTATCGGGCTGGAGAT 59.294 45.455 0.00 0.00 0.00 2.75
1538 3206 3.901222 TGTTGATTATCGGGCTGGAGATA 59.099 43.478 0.00 0.00 0.00 1.98
1539 3207 4.246458 GTTGATTATCGGGCTGGAGATAC 58.754 47.826 0.00 0.00 0.00 2.24
1540 3208 3.506398 TGATTATCGGGCTGGAGATACA 58.494 45.455 0.00 0.00 0.00 2.29
1541 3209 3.901222 TGATTATCGGGCTGGAGATACAA 59.099 43.478 0.00 0.00 0.00 2.41
1542 3210 4.346709 TGATTATCGGGCTGGAGATACAAA 59.653 41.667 0.00 0.00 0.00 2.83
1543 3211 4.764050 TTATCGGGCTGGAGATACAAAA 57.236 40.909 0.00 0.00 0.00 2.44
1544 3212 3.644966 ATCGGGCTGGAGATACAAAAA 57.355 42.857 0.00 0.00 0.00 1.94
1545 3213 2.706890 TCGGGCTGGAGATACAAAAAC 58.293 47.619 0.00 0.00 0.00 2.43
1546 3214 2.304761 TCGGGCTGGAGATACAAAAACT 59.695 45.455 0.00 0.00 0.00 2.66
1547 3215 2.420022 CGGGCTGGAGATACAAAAACTG 59.580 50.000 0.00 0.00 0.00 3.16
1548 3216 2.755103 GGGCTGGAGATACAAAAACTGG 59.245 50.000 0.00 0.00 0.00 4.00
1549 3217 3.421844 GGCTGGAGATACAAAAACTGGT 58.578 45.455 0.00 0.00 0.00 4.00
1550 3218 3.440522 GGCTGGAGATACAAAAACTGGTC 59.559 47.826 0.00 0.00 0.00 4.02
1551 3219 4.327680 GCTGGAGATACAAAAACTGGTCT 58.672 43.478 0.00 0.00 0.00 3.85
1552 3220 5.488341 GCTGGAGATACAAAAACTGGTCTA 58.512 41.667 0.00 0.00 0.00 2.59
1553 3221 5.938125 GCTGGAGATACAAAAACTGGTCTAA 59.062 40.000 0.00 0.00 0.00 2.10
1554 3222 6.430000 GCTGGAGATACAAAAACTGGTCTAAA 59.570 38.462 0.00 0.00 0.00 1.85
1555 3223 7.040686 GCTGGAGATACAAAAACTGGTCTAAAA 60.041 37.037 0.00 0.00 0.00 1.52
1556 3224 8.391075 TGGAGATACAAAAACTGGTCTAAAAG 57.609 34.615 0.00 0.00 0.00 2.27
1557 3225 7.447238 TGGAGATACAAAAACTGGTCTAAAAGG 59.553 37.037 0.00 0.00 0.00 3.11
1558 3226 7.215719 AGATACAAAAACTGGTCTAAAAGGC 57.784 36.000 0.00 0.00 0.00 4.35
1559 3227 4.665833 ACAAAAACTGGTCTAAAAGGCC 57.334 40.909 0.00 0.00 41.40 5.19
1564 3232 1.382629 TGGTCTAAAAGGCCAGGCC 59.617 57.895 24.90 24.90 46.76 5.19
1575 3243 0.833949 GGCCAGGCCTATATCTAGCC 59.166 60.000 24.99 5.71 46.69 3.93
1576 3244 0.461961 GCCAGGCCTATATCTAGCCG 59.538 60.000 3.98 0.00 0.00 5.52
1577 3245 1.960471 GCCAGGCCTATATCTAGCCGA 60.960 57.143 3.98 0.00 0.00 5.54
1578 3246 2.028130 CCAGGCCTATATCTAGCCGAG 58.972 57.143 3.98 0.00 0.00 4.63
1579 3247 2.621929 CCAGGCCTATATCTAGCCGAGT 60.622 54.545 3.98 0.00 0.00 4.18
1580 3248 2.685897 CAGGCCTATATCTAGCCGAGTC 59.314 54.545 3.98 0.00 0.00 3.36
1581 3249 2.025898 GGCCTATATCTAGCCGAGTCC 58.974 57.143 0.00 0.00 0.00 3.85
1582 3250 2.025898 GCCTATATCTAGCCGAGTCCC 58.974 57.143 0.00 0.00 0.00 4.46
1583 3251 2.290464 CCTATATCTAGCCGAGTCCCG 58.710 57.143 0.00 0.00 38.18 5.14
1584 3252 2.093075 CCTATATCTAGCCGAGTCCCGA 60.093 54.545 0.00 0.00 41.76 5.14
1585 3253 2.116827 ATATCTAGCCGAGTCCCGAG 57.883 55.000 0.00 0.00 41.76 4.63
1586 3254 1.054231 TATCTAGCCGAGTCCCGAGA 58.946 55.000 0.00 0.00 41.76 4.04
1587 3255 0.183014 ATCTAGCCGAGTCCCGAGAA 59.817 55.000 0.00 0.00 41.76 2.87
1588 3256 0.034767 TCTAGCCGAGTCCCGAGAAA 60.035 55.000 0.00 0.00 41.76 2.52
1589 3257 0.815734 CTAGCCGAGTCCCGAGAAAA 59.184 55.000 0.00 0.00 41.76 2.29
1590 3258 1.203994 CTAGCCGAGTCCCGAGAAAAA 59.796 52.381 0.00 0.00 41.76 1.94
1724 3392 4.473520 CCTAGTGGCCCACGCAGG 62.474 72.222 19.23 19.23 39.64 4.85
1745 3413 1.089112 CATTCGTGCATGGCAAGAGA 58.911 50.000 5.98 0.00 46.12 3.10
1749 3417 1.721664 CGTGCATGGCAAGAGATGGG 61.722 60.000 0.00 0.00 41.47 4.00
1764 3432 7.616313 CAAGAGATGGGACTAAAGTTTAGTCT 58.384 38.462 36.81 25.89 42.54 3.24
1769 3437 6.681729 TGGGACTAAAGTTTAGTCTCACAT 57.318 37.500 37.71 14.60 46.65 3.21
1791 3459 1.886655 GCTAGTTTGGTGGGAGTTGGG 60.887 57.143 0.00 0.00 0.00 4.12
1792 3460 1.423921 CTAGTTTGGTGGGAGTTGGGT 59.576 52.381 0.00 0.00 0.00 4.51
1805 3479 3.375699 GAGTTGGGTCTCCTTGAGGATA 58.624 50.000 0.00 0.00 44.46 2.59
1809 3483 5.254032 AGTTGGGTCTCCTTGAGGATATTTT 59.746 40.000 0.00 0.00 44.46 1.82
1811 3485 5.039645 TGGGTCTCCTTGAGGATATTTTCT 58.960 41.667 0.00 0.00 44.46 2.52
1839 3513 4.467438 TGTATGAGCATGAGAACAAGAGGA 59.533 41.667 0.00 0.00 0.00 3.71
1841 3515 4.564782 TGAGCATGAGAACAAGAGGAAT 57.435 40.909 0.00 0.00 0.00 3.01
1852 3526 1.071239 CAAGAGGAATATTCACGCGCG 60.071 52.381 30.96 30.96 0.00 6.86
1936 3791 1.898472 CTCTCACCTCCTTCTCTTGCA 59.102 52.381 0.00 0.00 0.00 4.08
1946 3801 5.819901 CCTCCTTCTCTTGCACCTATAAAAG 59.180 44.000 0.00 0.00 0.00 2.27
1974 3982 3.443052 TGTACGGGAGAAGGGTGATAAA 58.557 45.455 0.00 0.00 0.00 1.40
1991 3999 1.119684 AAAGTTTTTGGGGAGCGCTT 58.880 45.000 13.26 0.00 0.00 4.68
1995 4003 0.753479 TTTTTGGGGAGCGCTTCACA 60.753 50.000 19.17 19.17 0.00 3.58
1997 4005 2.616797 TTTGGGGAGCGCTTCACACA 62.617 55.000 23.40 12.64 0.00 3.72
1998 4006 2.281484 GGGGAGCGCTTCACACAA 60.281 61.111 19.50 0.00 0.00 3.33
1999 4007 2.617274 GGGGAGCGCTTCACACAAC 61.617 63.158 19.50 0.00 0.00 3.32
2000 4008 1.598130 GGGAGCGCTTCACACAACT 60.598 57.895 19.50 0.00 0.00 3.16
2049 4057 2.181021 CCGACGACTTCTTCCCCG 59.819 66.667 0.00 0.00 0.00 5.73
2090 4098 1.890979 CATGGCTGGCGAGGATGTC 60.891 63.158 0.00 0.00 0.00 3.06
2102 4110 1.221021 GGATGTCGACCCCAAGTCC 59.779 63.158 14.12 7.20 43.08 3.85
2112 4120 0.984230 CCCCAAGTCCAGTGCTTCTA 59.016 55.000 0.00 0.00 0.00 2.10
2127 4135 2.676176 GCTTCTACTGATGCTGCTGTCA 60.676 50.000 0.00 4.73 39.41 3.58
2174 4182 2.173569 AGAAGTCCTGCCACAGTTCTTT 59.826 45.455 0.00 0.00 0.00 2.52
2184 4192 2.481952 CCACAGTTCTTTGCTCTAGTGC 59.518 50.000 9.86 9.86 0.00 4.40
2186 4194 2.079925 CAGTTCTTTGCTCTAGTGCCC 58.920 52.381 13.91 0.00 0.00 5.36
2198 4206 1.623811 CTAGTGCCCGCCCTACATATT 59.376 52.381 0.00 0.00 0.00 1.28
2207 4215 4.202430 CCCGCCCTACATATTTTAGGTTCT 60.202 45.833 6.46 0.00 35.21 3.01
2213 4221 7.384387 GCCCTACATATTTTAGGTTCTACTTCG 59.616 40.741 6.46 0.00 35.21 3.79
2222 4230 8.638685 TTTTAGGTTCTACTTCGTATATGCAC 57.361 34.615 0.00 0.00 0.00 4.57
2223 4231 5.847111 AGGTTCTACTTCGTATATGCACA 57.153 39.130 0.00 0.00 0.00 4.57
2239 4247 3.664107 TGCACAACTTGATCTAGTGTCC 58.336 45.455 10.65 2.93 32.99 4.02
2273 4281 7.751732 TGTGTTCAGTTCAAGTTCATATATGC 58.248 34.615 7.92 0.00 0.00 3.14
2290 4298 9.605275 TCATATATGCAGATGCTATTTACCTTC 57.395 33.333 7.92 0.00 42.66 3.46
2294 4302 5.994250 TGCAGATGCTATTTACCTTCTCTT 58.006 37.500 6.35 0.00 42.66 2.85
2298 4306 7.466590 GCAGATGCTATTTACCTTCTCTTTGTC 60.467 40.741 0.00 0.00 38.21 3.18
2304 4312 8.394121 GCTATTTACCTTCTCTTTGTCAGATTG 58.606 37.037 0.00 0.00 0.00 2.67
2305 4313 6.560253 TTTACCTTCTCTTTGTCAGATTGC 57.440 37.500 0.00 0.00 0.00 3.56
2306 4314 4.363991 ACCTTCTCTTTGTCAGATTGCT 57.636 40.909 0.00 0.00 0.00 3.91
2395 4405 8.856153 TGGTAAACTGCTCATATTTCTAACAA 57.144 30.769 0.00 0.00 0.00 2.83
2396 4406 9.461312 TGGTAAACTGCTCATATTTCTAACAAT 57.539 29.630 0.00 0.00 0.00 2.71
2397 4407 9.937175 GGTAAACTGCTCATATTTCTAACAATC 57.063 33.333 0.00 0.00 0.00 2.67
2398 4408 9.937175 GTAAACTGCTCATATTTCTAACAATCC 57.063 33.333 0.00 0.00 0.00 3.01
2399 4409 8.579850 AAACTGCTCATATTTCTAACAATCCA 57.420 30.769 0.00 0.00 0.00 3.41
2400 4410 8.579850 AACTGCTCATATTTCTAACAATCCAA 57.420 30.769 0.00 0.00 0.00 3.53
2401 4411 8.579850 ACTGCTCATATTTCTAACAATCCAAA 57.420 30.769 0.00 0.00 0.00 3.28
2402 4412 9.023962 ACTGCTCATATTTCTAACAATCCAAAA 57.976 29.630 0.00 0.00 0.00 2.44
2403 4413 9.859427 CTGCTCATATTTCTAACAATCCAAAAA 57.141 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.831955 TCCTTCTTATCTTATCCTCCTTCTCT 58.168 38.462 0.00 0.00 0.00 3.10
2 3 8.485578 TTCCTTCTTATCTTATCCTCCTTCTC 57.514 38.462 0.00 0.00 0.00 2.87
4 5 7.511028 TCCTTCCTTCTTATCTTATCCTCCTTC 59.489 40.741 0.00 0.00 0.00 3.46
5 6 7.374271 TCCTTCCTTCTTATCTTATCCTCCTT 58.626 38.462 0.00 0.00 0.00 3.36
6 7 6.939617 TCCTTCCTTCTTATCTTATCCTCCT 58.060 40.000 0.00 0.00 0.00 3.69
7 8 7.619512 TTCCTTCCTTCTTATCTTATCCTCC 57.380 40.000 0.00 0.00 0.00 4.30
8 9 8.100164 CCATTCCTTCCTTCTTATCTTATCCTC 58.900 40.741 0.00 0.00 0.00 3.71
9 10 7.475510 GCCATTCCTTCCTTCTTATCTTATCCT 60.476 40.741 0.00 0.00 0.00 3.24
10 11 6.657117 GCCATTCCTTCCTTCTTATCTTATCC 59.343 42.308 0.00 0.00 0.00 2.59
11 12 7.390162 CAGCCATTCCTTCCTTCTTATCTTATC 59.610 40.741 0.00 0.00 0.00 1.75
12 13 7.072961 TCAGCCATTCCTTCCTTCTTATCTTAT 59.927 37.037 0.00 0.00 0.00 1.73
13 14 6.386927 TCAGCCATTCCTTCCTTCTTATCTTA 59.613 38.462 0.00 0.00 0.00 2.10
14 15 5.192522 TCAGCCATTCCTTCCTTCTTATCTT 59.807 40.000 0.00 0.00 0.00 2.40
15 16 4.723789 TCAGCCATTCCTTCCTTCTTATCT 59.276 41.667 0.00 0.00 0.00 1.98
16 17 5.041191 TCAGCCATTCCTTCCTTCTTATC 57.959 43.478 0.00 0.00 0.00 1.75
17 18 4.723789 TCTCAGCCATTCCTTCCTTCTTAT 59.276 41.667 0.00 0.00 0.00 1.73
18 19 4.104086 TCTCAGCCATTCCTTCCTTCTTA 58.896 43.478 0.00 0.00 0.00 2.10
19 20 2.915604 TCTCAGCCATTCCTTCCTTCTT 59.084 45.455 0.00 0.00 0.00 2.52
20 21 2.504996 CTCTCAGCCATTCCTTCCTTCT 59.495 50.000 0.00 0.00 0.00 2.85
21 22 2.503356 TCTCTCAGCCATTCCTTCCTTC 59.497 50.000 0.00 0.00 0.00 3.46
22 23 2.555664 TCTCTCAGCCATTCCTTCCTT 58.444 47.619 0.00 0.00 0.00 3.36
23 24 2.260639 TCTCTCAGCCATTCCTTCCT 57.739 50.000 0.00 0.00 0.00 3.36
24 25 3.277715 CTTTCTCTCAGCCATTCCTTCC 58.722 50.000 0.00 0.00 0.00 3.46
25 26 2.682352 GCTTTCTCTCAGCCATTCCTTC 59.318 50.000 0.00 0.00 0.00 3.46
26 27 2.040813 TGCTTTCTCTCAGCCATTCCTT 59.959 45.455 0.00 0.00 36.33 3.36
27 28 1.632409 TGCTTTCTCTCAGCCATTCCT 59.368 47.619 0.00 0.00 36.33 3.36
28 29 2.015587 CTGCTTTCTCTCAGCCATTCC 58.984 52.381 0.00 0.00 36.33 3.01
29 30 2.419324 CACTGCTTTCTCTCAGCCATTC 59.581 50.000 0.00 0.00 36.33 2.67
30 31 2.434428 CACTGCTTTCTCTCAGCCATT 58.566 47.619 0.00 0.00 36.33 3.16
31 32 1.339824 CCACTGCTTTCTCTCAGCCAT 60.340 52.381 0.00 0.00 36.33 4.40
32 33 0.035881 CCACTGCTTTCTCTCAGCCA 59.964 55.000 0.00 0.00 36.33 4.75
33 34 0.036022 ACCACTGCTTTCTCTCAGCC 59.964 55.000 0.00 0.00 36.33 4.85
34 35 1.155042 CACCACTGCTTTCTCTCAGC 58.845 55.000 0.00 0.00 37.82 4.26
35 36 1.610102 CCCACCACTGCTTTCTCTCAG 60.610 57.143 0.00 0.00 36.45 3.35
36 37 0.397941 CCCACCACTGCTTTCTCTCA 59.602 55.000 0.00 0.00 0.00 3.27
37 38 0.398318 ACCCACCACTGCTTTCTCTC 59.602 55.000 0.00 0.00 0.00 3.20
38 39 0.109342 CACCCACCACTGCTTTCTCT 59.891 55.000 0.00 0.00 0.00 3.10
39 40 0.890996 CCACCCACCACTGCTTTCTC 60.891 60.000 0.00 0.00 0.00 2.87
40 41 1.151450 CCACCCACCACTGCTTTCT 59.849 57.895 0.00 0.00 0.00 2.52
41 42 0.890996 CTCCACCCACCACTGCTTTC 60.891 60.000 0.00 0.00 0.00 2.62
42 43 1.151450 CTCCACCCACCACTGCTTT 59.849 57.895 0.00 0.00 0.00 3.51
43 44 1.352622 TTCTCCACCCACCACTGCTT 61.353 55.000 0.00 0.00 0.00 3.91
44 45 1.770110 TTCTCCACCCACCACTGCT 60.770 57.895 0.00 0.00 0.00 4.24
45 46 1.302832 CTTCTCCACCCACCACTGC 60.303 63.158 0.00 0.00 0.00 4.40
46 47 1.376466 CCTTCTCCACCCACCACTG 59.624 63.158 0.00 0.00 0.00 3.66
47 48 1.847968 CCCTTCTCCACCCACCACT 60.848 63.158 0.00 0.00 0.00 4.00
48 49 1.423794 TTCCCTTCTCCACCCACCAC 61.424 60.000 0.00 0.00 0.00 4.16
49 50 1.073319 TTCCCTTCTCCACCCACCA 60.073 57.895 0.00 0.00 0.00 4.17
50 51 0.840722 TCTTCCCTTCTCCACCCACC 60.841 60.000 0.00 0.00 0.00 4.61
51 52 0.615850 CTCTTCCCTTCTCCACCCAC 59.384 60.000 0.00 0.00 0.00 4.61
52 53 0.547712 CCTCTTCCCTTCTCCACCCA 60.548 60.000 0.00 0.00 0.00 4.51
53 54 0.252742 TCCTCTTCCCTTCTCCACCC 60.253 60.000 0.00 0.00 0.00 4.61
54 55 1.657804 TTCCTCTTCCCTTCTCCACC 58.342 55.000 0.00 0.00 0.00 4.61
55 56 2.026729 CCTTTCCTCTTCCCTTCTCCAC 60.027 54.545 0.00 0.00 0.00 4.02
56 57 2.269940 CCTTTCCTCTTCCCTTCTCCA 58.730 52.381 0.00 0.00 0.00 3.86
57 58 1.562008 CCCTTTCCTCTTCCCTTCTCC 59.438 57.143 0.00 0.00 0.00 3.71
58 59 2.552367 TCCCTTTCCTCTTCCCTTCTC 58.448 52.381 0.00 0.00 0.00 2.87
59 60 2.743131 TCCCTTTCCTCTTCCCTTCT 57.257 50.000 0.00 0.00 0.00 2.85
60 61 2.846827 TCATCCCTTTCCTCTTCCCTTC 59.153 50.000 0.00 0.00 0.00 3.46
61 62 2.849318 CTCATCCCTTTCCTCTTCCCTT 59.151 50.000 0.00 0.00 0.00 3.95
62 63 2.226013 ACTCATCCCTTTCCTCTTCCCT 60.226 50.000 0.00 0.00 0.00 4.20
63 64 2.092699 CACTCATCCCTTTCCTCTTCCC 60.093 54.545 0.00 0.00 0.00 3.97
64 65 2.092699 CCACTCATCCCTTTCCTCTTCC 60.093 54.545 0.00 0.00 0.00 3.46
65 66 2.092699 CCCACTCATCCCTTTCCTCTTC 60.093 54.545 0.00 0.00 0.00 2.87
66 67 1.918957 CCCACTCATCCCTTTCCTCTT 59.081 52.381 0.00 0.00 0.00 2.85
67 68 1.081174 TCCCACTCATCCCTTTCCTCT 59.919 52.381 0.00 0.00 0.00 3.69
68 69 1.488393 CTCCCACTCATCCCTTTCCTC 59.512 57.143 0.00 0.00 0.00 3.71
69 70 1.081174 TCTCCCACTCATCCCTTTCCT 59.919 52.381 0.00 0.00 0.00 3.36
70 71 1.488393 CTCTCCCACTCATCCCTTTCC 59.512 57.143 0.00 0.00 0.00 3.13
71 72 2.169561 GTCTCTCCCACTCATCCCTTTC 59.830 54.545 0.00 0.00 0.00 2.62
72 73 2.192263 GTCTCTCCCACTCATCCCTTT 58.808 52.381 0.00 0.00 0.00 3.11
73 74 1.079490 TGTCTCTCCCACTCATCCCTT 59.921 52.381 0.00 0.00 0.00 3.95
74 75 0.712979 TGTCTCTCCCACTCATCCCT 59.287 55.000 0.00 0.00 0.00 4.20
75 76 0.827368 GTGTCTCTCCCACTCATCCC 59.173 60.000 0.00 0.00 0.00 3.85
76 77 0.457851 CGTGTCTCTCCCACTCATCC 59.542 60.000 0.00 0.00 0.00 3.51
77 78 0.179124 GCGTGTCTCTCCCACTCATC 60.179 60.000 0.00 0.00 0.00 2.92
78 79 1.893786 GCGTGTCTCTCCCACTCAT 59.106 57.895 0.00 0.00 0.00 2.90
79 80 2.626780 CGCGTGTCTCTCCCACTCA 61.627 63.158 0.00 0.00 0.00 3.41
80 81 2.179517 CGCGTGTCTCTCCCACTC 59.820 66.667 0.00 0.00 0.00 3.51
81 82 2.597805 ACGCGTGTCTCTCCCACT 60.598 61.111 12.93 0.00 0.00 4.00
82 83 2.430921 CACGCGTGTCTCTCCCAC 60.431 66.667 30.50 0.00 0.00 4.61
83 84 3.680786 CCACGCGTGTCTCTCCCA 61.681 66.667 34.81 0.00 0.00 4.37
84 85 4.436998 CCCACGCGTGTCTCTCCC 62.437 72.222 34.81 0.00 0.00 4.30
86 87 4.357947 TGCCCACGCGTGTCTCTC 62.358 66.667 34.81 19.33 38.08 3.20
87 88 4.664677 GTGCCCACGCGTGTCTCT 62.665 66.667 34.81 0.00 38.08 3.10
88 89 4.961511 TGTGCCCACGCGTGTCTC 62.962 66.667 34.81 25.13 38.08 3.36
89 90 4.314440 ATGTGCCCACGCGTGTCT 62.314 61.111 34.81 11.84 38.08 3.41
90 91 4.088762 CATGTGCCCACGCGTGTC 62.089 66.667 34.81 25.88 38.30 3.67
92 93 4.388080 CACATGTGCCCACGCGTG 62.388 66.667 31.77 31.77 46.62 5.34
96 97 3.271706 CTTGCCACATGTGCCCACG 62.272 63.158 20.81 12.52 0.00 4.94
97 98 2.652530 CTTGCCACATGTGCCCAC 59.347 61.111 20.81 9.55 0.00 4.61
98 99 3.304721 GCTTGCCACATGTGCCCA 61.305 61.111 20.81 15.71 0.00 5.36
99 100 4.073200 GGCTTGCCACATGTGCCC 62.073 66.667 20.81 13.31 37.81 5.36
100 101 4.424566 CGGCTTGCCACATGTGCC 62.425 66.667 20.81 16.46 40.14 5.01
101 102 3.673484 ACGGCTTGCCACATGTGC 61.673 61.111 20.81 15.64 0.00 4.57
102 103 2.256158 CACGGCTTGCCACATGTG 59.744 61.111 19.31 19.31 0.00 3.21
103 104 2.985282 CCACGGCTTGCCACATGT 60.985 61.111 12.45 0.00 0.00 3.21
104 105 3.751246 CCCACGGCTTGCCACATG 61.751 66.667 12.45 6.52 0.00 3.21
126 127 3.503363 GACATCCAGTGCGCCAGC 61.503 66.667 4.18 0.00 45.41 4.85
127 128 2.104859 CAGACATCCAGTGCGCCAG 61.105 63.158 4.18 0.00 0.00 4.85
128 129 2.046988 CAGACATCCAGTGCGCCA 60.047 61.111 4.18 0.00 0.00 5.69
129 130 3.503363 GCAGACATCCAGTGCGCC 61.503 66.667 4.18 0.00 0.00 6.53
130 131 2.044832 GATGCAGACATCCAGTGCGC 62.045 60.000 0.00 0.00 45.94 6.09
131 132 2.012237 GATGCAGACATCCAGTGCG 58.988 57.895 0.00 0.00 45.94 5.34
139 140 0.182061 AATCAGCCGGATGCAGACAT 59.818 50.000 16.69 0.00 44.83 3.06
140 141 0.035152 AAATCAGCCGGATGCAGACA 60.035 50.000 16.69 0.00 44.83 3.41
141 142 1.869767 CTAAATCAGCCGGATGCAGAC 59.130 52.381 16.69 0.00 44.83 3.51
142 143 1.762370 TCTAAATCAGCCGGATGCAGA 59.238 47.619 16.69 11.59 44.83 4.26
143 144 2.141517 CTCTAAATCAGCCGGATGCAG 58.858 52.381 16.69 9.34 44.83 4.41
144 145 1.811558 GCTCTAAATCAGCCGGATGCA 60.812 52.381 16.69 4.37 44.83 3.96
145 146 0.871057 GCTCTAAATCAGCCGGATGC 59.129 55.000 16.69 0.00 36.02 3.91
146 147 1.143305 CGCTCTAAATCAGCCGGATG 58.857 55.000 15.12 15.12 36.02 3.51
147 148 0.753262 ACGCTCTAAATCAGCCGGAT 59.247 50.000 5.05 0.00 38.05 4.18
148 149 0.535335 AACGCTCTAAATCAGCCGGA 59.465 50.000 5.05 0.00 32.83 5.14
149 150 1.369625 AAACGCTCTAAATCAGCCGG 58.630 50.000 0.00 0.00 32.83 6.13
150 151 2.223044 GGAAAACGCTCTAAATCAGCCG 60.223 50.000 0.00 0.00 32.83 5.52
151 152 2.747446 TGGAAAACGCTCTAAATCAGCC 59.253 45.455 0.00 0.00 32.83 4.85
152 153 4.622701 ATGGAAAACGCTCTAAATCAGC 57.377 40.909 0.00 0.00 0.00 4.26
153 154 6.017605 AGCATATGGAAAACGCTCTAAATCAG 60.018 38.462 4.56 0.00 0.00 2.90
154 155 5.822519 AGCATATGGAAAACGCTCTAAATCA 59.177 36.000 4.56 0.00 0.00 2.57
155 156 6.305693 AGCATATGGAAAACGCTCTAAATC 57.694 37.500 4.56 0.00 0.00 2.17
156 157 6.699575 AAGCATATGGAAAACGCTCTAAAT 57.300 33.333 4.56 0.00 31.17 1.40
157 158 6.509418 AAAGCATATGGAAAACGCTCTAAA 57.491 33.333 4.56 0.00 31.17 1.85
158 159 6.150307 TGAAAAGCATATGGAAAACGCTCTAA 59.850 34.615 4.56 0.00 31.17 2.10
159 160 5.645929 TGAAAAGCATATGGAAAACGCTCTA 59.354 36.000 4.56 0.00 31.17 2.43
160 161 4.458989 TGAAAAGCATATGGAAAACGCTCT 59.541 37.500 4.56 0.00 31.17 4.09
161 162 4.558860 GTGAAAAGCATATGGAAAACGCTC 59.441 41.667 4.56 0.00 31.17 5.03
162 163 4.485163 GTGAAAAGCATATGGAAAACGCT 58.515 39.130 4.56 0.00 33.45 5.07
163 164 3.612423 GGTGAAAAGCATATGGAAAACGC 59.388 43.478 4.56 0.00 0.00 4.84
164 165 5.059404 AGGTGAAAAGCATATGGAAAACG 57.941 39.130 4.56 0.00 0.00 3.60
165 166 7.728847 AAAAGGTGAAAAGCATATGGAAAAC 57.271 32.000 4.56 0.00 0.00 2.43
203 204 2.216488 CAGAAAGTCAGTCACGTTCACG 59.784 50.000 0.00 0.00 43.76 4.35
204 205 3.187700 ACAGAAAGTCAGTCACGTTCAC 58.812 45.455 0.00 0.00 43.76 3.18
205 206 3.444916 GACAGAAAGTCAGTCACGTTCA 58.555 45.455 0.00 0.00 46.77 3.18
237 238 9.182214 ACACGGAGAAGTACTTCATATAAGTAA 57.818 33.333 31.80 0.00 41.84 2.24
238 239 8.743085 ACACGGAGAAGTACTTCATATAAGTA 57.257 34.615 31.80 0.00 41.84 2.24
239 240 7.201803 GGACACGGAGAAGTACTTCATATAAGT 60.202 40.741 31.80 22.61 41.84 2.24
240 241 7.013464 AGGACACGGAGAAGTACTTCATATAAG 59.987 40.741 31.80 20.15 41.84 1.73
241 242 6.832384 AGGACACGGAGAAGTACTTCATATAA 59.168 38.462 31.80 0.00 41.84 0.98
242 243 6.363065 AGGACACGGAGAAGTACTTCATATA 58.637 40.000 31.80 0.00 41.84 0.86
243 244 5.202004 AGGACACGGAGAAGTACTTCATAT 58.798 41.667 31.80 15.68 41.84 1.78
244 245 4.597004 AGGACACGGAGAAGTACTTCATA 58.403 43.478 31.80 0.00 41.84 2.15
245 246 3.432378 AGGACACGGAGAAGTACTTCAT 58.568 45.455 31.80 19.35 41.84 2.57
246 247 2.872732 AGGACACGGAGAAGTACTTCA 58.127 47.619 31.80 0.00 41.84 3.02
247 248 6.294065 CCATATAGGACACGGAGAAGTACTTC 60.294 46.154 25.24 25.24 41.22 3.01
248 249 5.535406 CCATATAGGACACGGAGAAGTACTT 59.465 44.000 8.13 8.13 41.22 2.24
249 250 5.071370 CCATATAGGACACGGAGAAGTACT 58.929 45.833 0.00 0.00 41.22 2.73
250 251 5.068636 TCCATATAGGACACGGAGAAGTAC 58.931 45.833 0.00 0.00 43.07 2.73
251 252 5.314718 TCCATATAGGACACGGAGAAGTA 57.685 43.478 0.00 0.00 43.07 2.24
252 253 4.180377 TCCATATAGGACACGGAGAAGT 57.820 45.455 0.00 0.00 43.07 3.01
262 263 7.730415 GGGCAAAGGACCTTCCATATAGGAC 62.730 52.000 7.34 0.00 39.77 3.85
263 264 5.741953 GGGCAAAGGACCTTCCATATAGGA 61.742 50.000 7.34 0.00 41.61 2.94
264 265 3.498661 GGGCAAAGGACCTTCCATATAGG 60.499 52.174 7.34 0.00 40.08 2.57
265 266 3.756117 GGGCAAAGGACCTTCCATATAG 58.244 50.000 7.34 0.00 40.08 1.31
266 267 3.876309 GGGCAAAGGACCTTCCATATA 57.124 47.619 7.34 0.00 40.08 0.86
267 268 2.755952 GGGCAAAGGACCTTCCATAT 57.244 50.000 7.34 0.00 40.08 1.78
275 276 1.550524 GATGGAAAAGGGCAAAGGACC 59.449 52.381 0.00 0.00 45.66 4.46
276 277 1.550524 GGATGGAAAAGGGCAAAGGAC 59.449 52.381 0.00 0.00 0.00 3.85
277 278 1.432807 AGGATGGAAAAGGGCAAAGGA 59.567 47.619 0.00 0.00 0.00 3.36
278 279 1.942776 AGGATGGAAAAGGGCAAAGG 58.057 50.000 0.00 0.00 0.00 3.11
279 280 2.428530 GCTAGGATGGAAAAGGGCAAAG 59.571 50.000 0.00 0.00 0.00 2.77
280 281 2.225242 TGCTAGGATGGAAAAGGGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
281 282 1.357420 TGCTAGGATGGAAAAGGGCAA 59.643 47.619 0.00 0.00 0.00 4.52
282 283 0.998928 TGCTAGGATGGAAAAGGGCA 59.001 50.000 0.00 0.00 0.00 5.36
283 284 1.340991 TGTGCTAGGATGGAAAAGGGC 60.341 52.381 0.00 0.00 0.00 5.19
284 285 2.806945 TGTGCTAGGATGGAAAAGGG 57.193 50.000 0.00 0.00 0.00 3.95
285 286 3.889815 TCATGTGCTAGGATGGAAAAGG 58.110 45.455 0.00 0.00 0.00 3.11
286 287 4.201851 CGTTCATGTGCTAGGATGGAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
287 288 3.689161 CGTTCATGTGCTAGGATGGAAAA 59.311 43.478 0.00 0.00 0.00 2.29
288 289 3.270027 CGTTCATGTGCTAGGATGGAAA 58.730 45.455 0.00 0.00 0.00 3.13
289 290 2.236146 ACGTTCATGTGCTAGGATGGAA 59.764 45.455 0.00 0.00 0.00 3.53
290 291 1.831106 ACGTTCATGTGCTAGGATGGA 59.169 47.619 0.00 0.00 0.00 3.41
291 292 1.935873 CACGTTCATGTGCTAGGATGG 59.064 52.381 0.00 0.00 32.31 3.51
292 293 1.935873 CCACGTTCATGTGCTAGGATG 59.064 52.381 0.00 0.00 38.55 3.51
293 294 1.743772 GCCACGTTCATGTGCTAGGAT 60.744 52.381 0.00 0.00 38.55 3.24
294 295 0.391130 GCCACGTTCATGTGCTAGGA 60.391 55.000 0.00 0.00 38.55 2.94
295 296 0.673333 TGCCACGTTCATGTGCTAGG 60.673 55.000 0.00 0.00 38.55 3.02
296 297 0.723414 CTGCCACGTTCATGTGCTAG 59.277 55.000 0.00 0.00 38.55 3.42
297 298 0.673333 CCTGCCACGTTCATGTGCTA 60.673 55.000 0.00 0.00 38.55 3.49
298 299 1.968017 CCTGCCACGTTCATGTGCT 60.968 57.895 0.00 0.00 38.55 4.40
299 300 2.562912 CCTGCCACGTTCATGTGC 59.437 61.111 0.00 0.00 38.55 4.57
300 301 1.518056 AAGCCTGCCACGTTCATGTG 61.518 55.000 0.00 0.00 39.60 3.21
301 302 1.228245 AAGCCTGCCACGTTCATGT 60.228 52.632 0.00 0.00 0.00 3.21
302 303 1.503542 GAAGCCTGCCACGTTCATG 59.496 57.895 0.00 0.00 0.00 3.07
303 304 1.675641 GGAAGCCTGCCACGTTCAT 60.676 57.895 0.00 0.00 0.00 2.57
304 305 2.281484 GGAAGCCTGCCACGTTCA 60.281 61.111 0.00 0.00 0.00 3.18
305 306 2.032681 AGGAAGCCTGCCACGTTC 59.967 61.111 0.00 0.00 29.57 3.95
306 307 2.281761 CAGGAAGCCTGCCACGTT 60.282 61.111 0.00 0.00 45.13 3.99
330 331 6.711645 AGTCACAAATATTGCAATGCCTTTTT 59.288 30.769 22.27 10.35 0.00 1.94
331 332 6.232692 AGTCACAAATATTGCAATGCCTTTT 58.767 32.000 22.27 12.55 0.00 2.27
332 333 5.797051 AGTCACAAATATTGCAATGCCTTT 58.203 33.333 22.27 14.64 0.00 3.11
333 334 5.410355 AGTCACAAATATTGCAATGCCTT 57.590 34.783 22.27 9.67 0.00 4.35
334 335 5.410355 AAGTCACAAATATTGCAATGCCT 57.590 34.783 22.27 3.75 0.00 4.75
335 336 6.369615 AGAAAAGTCACAAATATTGCAATGCC 59.630 34.615 22.27 0.00 0.00 4.40
336 337 7.116662 TGAGAAAAGTCACAAATATTGCAATGC 59.883 33.333 22.27 0.00 0.00 3.56
337 338 8.523523 TGAGAAAAGTCACAAATATTGCAATG 57.476 30.769 22.27 9.22 0.00 2.82
338 339 9.545105 TTTGAGAAAAGTCACAAATATTGCAAT 57.455 25.926 17.56 17.56 38.79 3.56
339 340 8.939201 TTTGAGAAAAGTCACAAATATTGCAA 57.061 26.923 0.00 0.00 38.79 4.08
351 352 9.528018 GGTGAAAAATGTATTTGAGAAAAGTCA 57.472 29.630 0.00 0.00 0.00 3.41
352 353 9.750125 AGGTGAAAAATGTATTTGAGAAAAGTC 57.250 29.630 0.00 0.00 0.00 3.01
370 371 9.619316 CGTGTATTATGATGAAAAAGGTGAAAA 57.381 29.630 0.00 0.00 0.00 2.29
371 372 9.004717 TCGTGTATTATGATGAAAAAGGTGAAA 57.995 29.630 0.00 0.00 0.00 2.69
372 373 8.554835 TCGTGTATTATGATGAAAAAGGTGAA 57.445 30.769 0.00 0.00 0.00 3.18
373 374 8.447833 GTTCGTGTATTATGATGAAAAAGGTGA 58.552 33.333 0.00 0.00 0.00 4.02
374 375 7.425309 CGTTCGTGTATTATGATGAAAAAGGTG 59.575 37.037 0.00 0.00 0.00 4.00
375 376 7.118680 ACGTTCGTGTATTATGATGAAAAAGGT 59.881 33.333 0.00 0.00 0.00 3.50
376 377 7.425309 CACGTTCGTGTATTATGATGAAAAAGG 59.575 37.037 15.81 0.00 0.00 3.11
377 378 7.425309 CCACGTTCGTGTATTATGATGAAAAAG 59.575 37.037 20.93 0.00 34.59 2.27
378 379 7.237871 CCACGTTCGTGTATTATGATGAAAAA 58.762 34.615 20.93 0.00 34.59 1.94
379 380 6.673556 GCCACGTTCGTGTATTATGATGAAAA 60.674 38.462 20.93 0.00 34.59 2.29
380 381 5.220510 GCCACGTTCGTGTATTATGATGAAA 60.221 40.000 20.93 0.00 34.59 2.69
381 382 4.269123 GCCACGTTCGTGTATTATGATGAA 59.731 41.667 20.93 0.00 34.59 2.57
382 383 3.799963 GCCACGTTCGTGTATTATGATGA 59.200 43.478 20.93 0.00 34.59 2.92
383 384 3.553917 TGCCACGTTCGTGTATTATGATG 59.446 43.478 20.93 6.40 34.59 3.07
384 385 3.787785 TGCCACGTTCGTGTATTATGAT 58.212 40.909 20.93 0.00 34.59 2.45
385 386 3.119424 TCTGCCACGTTCGTGTATTATGA 60.119 43.478 20.93 9.46 34.59 2.15
386 387 3.000078 GTCTGCCACGTTCGTGTATTATG 60.000 47.826 20.93 8.22 34.59 1.90
387 388 3.119245 AGTCTGCCACGTTCGTGTATTAT 60.119 43.478 20.93 3.32 34.59 1.28
388 389 2.229543 AGTCTGCCACGTTCGTGTATTA 59.770 45.455 20.93 4.59 34.59 0.98
389 390 1.000506 AGTCTGCCACGTTCGTGTATT 59.999 47.619 20.93 1.85 34.59 1.89
390 391 0.601558 AGTCTGCCACGTTCGTGTAT 59.398 50.000 20.93 1.36 34.59 2.29
391 392 0.386476 AAGTCTGCCACGTTCGTGTA 59.614 50.000 20.93 10.74 34.59 2.90
392 393 0.461339 AAAGTCTGCCACGTTCGTGT 60.461 50.000 20.93 1.98 34.59 4.49
393 394 0.232303 GAAAGTCTGCCACGTTCGTG 59.768 55.000 16.87 16.87 34.38 4.35
394 395 0.104304 AGAAAGTCTGCCACGTTCGT 59.896 50.000 0.00 0.00 45.35 3.85
395 396 2.060326 TAGAAAGTCTGCCACGTTCG 57.940 50.000 0.00 0.00 45.35 3.95
396 397 3.326747 ACATAGAAAGTCTGCCACGTTC 58.673 45.455 4.13 4.13 42.18 3.95
397 398 3.402628 ACATAGAAAGTCTGCCACGTT 57.597 42.857 0.00 0.00 0.00 3.99
398 399 3.326747 GAACATAGAAAGTCTGCCACGT 58.673 45.455 0.00 0.00 0.00 4.49
399 400 2.673368 GGAACATAGAAAGTCTGCCACG 59.327 50.000 0.00 0.00 0.00 4.94
400 401 3.944087 AGGAACATAGAAAGTCTGCCAC 58.056 45.455 0.00 0.00 0.00 5.01
401 402 4.640771 AAGGAACATAGAAAGTCTGCCA 57.359 40.909 0.00 0.00 0.00 4.92
402 403 5.966742 AAAAGGAACATAGAAAGTCTGCC 57.033 39.130 0.00 0.00 0.00 4.85
426 427 8.700973 GGATGGAAAAGGGCAAAGTATAATAAA 58.299 33.333 0.00 0.00 0.00 1.40
427 428 8.065007 AGGATGGAAAAGGGCAAAGTATAATAA 58.935 33.333 0.00 0.00 0.00 1.40
428 429 7.591821 AGGATGGAAAAGGGCAAAGTATAATA 58.408 34.615 0.00 0.00 0.00 0.98
429 430 6.443832 AGGATGGAAAAGGGCAAAGTATAAT 58.556 36.000 0.00 0.00 0.00 1.28
430 431 5.837829 AGGATGGAAAAGGGCAAAGTATAA 58.162 37.500 0.00 0.00 0.00 0.98
431 432 5.466127 AGGATGGAAAAGGGCAAAGTATA 57.534 39.130 0.00 0.00 0.00 1.47
432 433 4.337264 AGGATGGAAAAGGGCAAAGTAT 57.663 40.909 0.00 0.00 0.00 2.12
433 434 3.825908 AGGATGGAAAAGGGCAAAGTA 57.174 42.857 0.00 0.00 0.00 2.24
434 435 2.702270 AGGATGGAAAAGGGCAAAGT 57.298 45.000 0.00 0.00 0.00 2.66
435 436 2.428530 GCTAGGATGGAAAAGGGCAAAG 59.571 50.000 0.00 0.00 0.00 2.77
436 437 2.225242 TGCTAGGATGGAAAAGGGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
437 438 1.357420 TGCTAGGATGGAAAAGGGCAA 59.643 47.619 0.00 0.00 0.00 4.52
438 439 0.998928 TGCTAGGATGGAAAAGGGCA 59.001 50.000 0.00 0.00 0.00 5.36
439 440 1.340991 TGTGCTAGGATGGAAAAGGGC 60.341 52.381 0.00 0.00 0.00 5.19
440 441 2.806945 TGTGCTAGGATGGAAAAGGG 57.193 50.000 0.00 0.00 0.00 3.95
441 442 3.889815 TCATGTGCTAGGATGGAAAAGG 58.110 45.455 0.00 0.00 0.00 3.11
442 443 5.008415 GTCATCATGTGCTAGGATGGAAAAG 59.992 44.000 13.47 0.00 45.27 2.27
443 444 4.883585 GTCATCATGTGCTAGGATGGAAAA 59.116 41.667 13.47 0.00 45.27 2.29
444 445 4.080413 TGTCATCATGTGCTAGGATGGAAA 60.080 41.667 13.47 1.57 45.27 3.13
445 446 3.455543 TGTCATCATGTGCTAGGATGGAA 59.544 43.478 13.47 3.40 45.27 3.53
446 447 3.040477 TGTCATCATGTGCTAGGATGGA 58.960 45.455 13.47 0.00 45.27 3.41
447 448 3.400255 CTGTCATCATGTGCTAGGATGG 58.600 50.000 13.47 0.00 45.27 3.51
448 449 3.400255 CCTGTCATCATGTGCTAGGATG 58.600 50.000 9.05 9.05 46.27 3.51
449 450 2.371179 CCCTGTCATCATGTGCTAGGAT 59.629 50.000 13.73 0.00 34.47 3.24
450 451 1.764723 CCCTGTCATCATGTGCTAGGA 59.235 52.381 13.73 0.00 34.47 2.94
451 452 1.487976 ACCCTGTCATCATGTGCTAGG 59.512 52.381 0.00 2.48 33.19 3.02
452 453 2.996249 ACCCTGTCATCATGTGCTAG 57.004 50.000 0.00 0.00 0.00 3.42
453 454 2.840038 AGAACCCTGTCATCATGTGCTA 59.160 45.455 0.00 0.00 0.00 3.49
454 455 1.632409 AGAACCCTGTCATCATGTGCT 59.368 47.619 0.00 0.00 0.00 4.40
455 456 2.119801 AGAACCCTGTCATCATGTGC 57.880 50.000 0.00 0.00 0.00 4.57
456 457 5.188434 ACATAAGAACCCTGTCATCATGTG 58.812 41.667 0.00 0.00 0.00 3.21
457 458 5.441718 ACATAAGAACCCTGTCATCATGT 57.558 39.130 0.00 0.00 0.00 3.21
458 459 6.375174 TGAAACATAAGAACCCTGTCATCATG 59.625 38.462 0.00 0.00 0.00 3.07
459 460 6.484288 TGAAACATAAGAACCCTGTCATCAT 58.516 36.000 0.00 0.00 0.00 2.45
460 461 5.875224 TGAAACATAAGAACCCTGTCATCA 58.125 37.500 0.00 0.00 0.00 3.07
461 462 6.817765 TTGAAACATAAGAACCCTGTCATC 57.182 37.500 0.00 0.00 0.00 2.92
462 463 7.595819 TTTTGAAACATAAGAACCCTGTCAT 57.404 32.000 0.00 0.00 0.00 3.06
463 464 7.411486 TTTTTGAAACATAAGAACCCTGTCA 57.589 32.000 0.00 0.00 0.00 3.58
510 511 9.474249 GCTAAGATTTAAAGATGACAACGTTAC 57.526 33.333 0.00 0.00 0.00 2.50
511 512 8.662141 GGCTAAGATTTAAAGATGACAACGTTA 58.338 33.333 0.00 0.00 0.00 3.18
512 513 7.390718 AGGCTAAGATTTAAAGATGACAACGTT 59.609 33.333 0.00 0.00 0.00 3.99
513 514 6.879458 AGGCTAAGATTTAAAGATGACAACGT 59.121 34.615 0.00 0.00 0.00 3.99
514 515 7.308782 AGGCTAAGATTTAAAGATGACAACG 57.691 36.000 0.00 0.00 0.00 4.10
624 625 9.592196 ACTCCCAATGCACAATATCTATAATTT 57.408 29.630 0.00 0.00 0.00 1.82
625 626 9.017509 CACTCCCAATGCACAATATCTATAATT 57.982 33.333 0.00 0.00 0.00 1.40
626 627 7.121759 GCACTCCCAATGCACAATATCTATAAT 59.878 37.037 0.00 0.00 42.88 1.28
627 628 6.430925 GCACTCCCAATGCACAATATCTATAA 59.569 38.462 0.00 0.00 42.88 0.98
628 629 5.939883 GCACTCCCAATGCACAATATCTATA 59.060 40.000 0.00 0.00 42.88 1.31
629 630 4.763793 GCACTCCCAATGCACAATATCTAT 59.236 41.667 0.00 0.00 42.88 1.98
630 631 4.136796 GCACTCCCAATGCACAATATCTA 58.863 43.478 0.00 0.00 42.88 1.98
631 632 2.954318 GCACTCCCAATGCACAATATCT 59.046 45.455 0.00 0.00 42.88 1.98
632 633 2.035066 GGCACTCCCAATGCACAATATC 59.965 50.000 0.00 0.00 45.27 1.63
633 634 2.034124 GGCACTCCCAATGCACAATAT 58.966 47.619 0.00 0.00 45.27 1.28
634 635 1.473258 GGCACTCCCAATGCACAATA 58.527 50.000 0.00 0.00 45.27 1.90
635 636 2.279842 GGCACTCCCAATGCACAAT 58.720 52.632 0.00 0.00 45.27 2.71
636 637 3.776158 GGCACTCCCAATGCACAA 58.224 55.556 0.00 0.00 45.27 3.33
651 652 6.901081 AATAGGAACAATTAATGCTAGGGC 57.099 37.500 0.00 0.00 39.26 5.19
676 677 9.314133 AGAAGAAACAAGAGGGCTTTATTAATT 57.686 29.630 0.00 0.00 30.14 1.40
677 678 8.885693 AGAAGAAACAAGAGGGCTTTATTAAT 57.114 30.769 0.00 0.00 30.14 1.40
678 679 8.706322 AAGAAGAAACAAGAGGGCTTTATTAA 57.294 30.769 0.00 0.00 30.14 1.40
679 680 8.706322 AAAGAAGAAACAAGAGGGCTTTATTA 57.294 30.769 0.00 0.00 30.14 0.98
680 681 7.603180 AAAGAAGAAACAAGAGGGCTTTATT 57.397 32.000 0.00 0.00 30.14 1.40
681 682 7.603180 AAAAGAAGAAACAAGAGGGCTTTAT 57.397 32.000 0.00 0.00 30.14 1.40
682 683 7.418337 AAAAAGAAGAAACAAGAGGGCTTTA 57.582 32.000 0.00 0.00 30.14 1.85
683 684 5.939764 AAAAGAAGAAACAAGAGGGCTTT 57.060 34.783 0.00 0.00 30.14 3.51
684 685 5.939764 AAAAAGAAGAAACAAGAGGGCTT 57.060 34.783 0.00 0.00 33.74 4.35
704 705 7.114095 ACACGAGGGCTTTATAATCCTAAAAA 58.886 34.615 0.00 0.00 0.00 1.94
705 706 6.655930 ACACGAGGGCTTTATAATCCTAAAA 58.344 36.000 0.00 0.00 0.00 1.52
706 707 6.243216 ACACGAGGGCTTTATAATCCTAAA 57.757 37.500 0.00 0.00 0.00 1.85
707 708 5.881923 ACACGAGGGCTTTATAATCCTAA 57.118 39.130 0.00 0.00 0.00 2.69
708 709 5.881923 AACACGAGGGCTTTATAATCCTA 57.118 39.130 0.00 0.00 0.00 2.94
709 710 4.772886 AACACGAGGGCTTTATAATCCT 57.227 40.909 0.00 3.17 0.00 3.24
710 711 4.879545 TGAAACACGAGGGCTTTATAATCC 59.120 41.667 0.00 0.00 0.00 3.01
711 712 6.430451 CATGAAACACGAGGGCTTTATAATC 58.570 40.000 0.00 0.00 0.00 1.75
712 713 5.221048 GCATGAAACACGAGGGCTTTATAAT 60.221 40.000 0.00 0.00 0.00 1.28
713 714 4.095782 GCATGAAACACGAGGGCTTTATAA 59.904 41.667 0.00 0.00 0.00 0.98
714 715 3.625764 GCATGAAACACGAGGGCTTTATA 59.374 43.478 0.00 0.00 0.00 0.98
715 716 2.423538 GCATGAAACACGAGGGCTTTAT 59.576 45.455 0.00 0.00 0.00 1.40
716 717 1.810151 GCATGAAACACGAGGGCTTTA 59.190 47.619 0.00 0.00 0.00 1.85
722 723 3.624326 TTTTCTGCATGAAACACGAGG 57.376 42.857 0.00 0.00 43.55 4.63
726 727 6.475076 TGTGTATGTTTTTCTGCATGAAACAC 59.525 34.615 18.61 16.83 43.53 3.32
758 759 5.065988 GGCAAACATTGACTACGTCCATATT 59.934 40.000 0.00 0.00 35.19 1.28
789 790 3.850173 ACCCATCTAAGGTCCTTGCTTTA 59.150 43.478 14.84 0.00 28.99 1.85
808 809 4.658901 TCCCATCTCCAGTTTATTAGACCC 59.341 45.833 0.00 0.00 0.00 4.46
822 1086 3.534357 TCTGGATACTCTCCCATCTCC 57.466 52.381 0.00 0.00 44.23 3.71
921 1186 6.683974 AGGCTATTGCTTTACTTGTACATG 57.316 37.500 7.18 7.18 39.59 3.21
924 1189 5.106317 TGCAAGGCTATTGCTTTACTTGTAC 60.106 40.000 21.96 0.00 45.13 2.90
951 1216 2.887151 AATCTGAGTTGTGGGGAAGG 57.113 50.000 0.00 0.00 0.00 3.46
997 1262 0.389166 GCGATCTTAGGAGCCATCGG 60.389 60.000 8.45 0.00 38.84 4.18
1006 1271 0.107456 ATGGCACTGGCGATCTTAGG 59.893 55.000 0.00 0.00 42.47 2.69
1021 1286 3.462982 TCAATACGTACATGACCATGGC 58.537 45.455 13.04 5.35 42.91 4.40
1058 1323 3.323979 AGCCCCATACTAACCTGAATACG 59.676 47.826 0.00 0.00 0.00 3.06
1091 1356 1.658717 CTCGATAAGGCTCGGCGTG 60.659 63.158 6.85 5.49 39.13 5.34
1123 1388 8.504815 CAAATATCATCTATCTTGAAGCACTGG 58.495 37.037 0.00 0.00 0.00 4.00
1153 1418 1.800805 AGATGTTGTGAAGCACTCGG 58.199 50.000 0.00 0.00 35.11 4.63
1160 1425 7.525688 AACATACACGATAGATGTTGTGAAG 57.474 36.000 4.18 0.00 41.17 3.02
1209 1474 9.884636 ACGCCTTGCATCTACATAATAATAATA 57.115 29.630 0.00 0.00 0.00 0.98
1210 1475 8.792830 ACGCCTTGCATCTACATAATAATAAT 57.207 30.769 0.00 0.00 0.00 1.28
1211 1476 8.503196 CAACGCCTTGCATCTACATAATAATAA 58.497 33.333 0.00 0.00 0.00 1.40
1212 1477 7.659799 ACAACGCCTTGCATCTACATAATAATA 59.340 33.333 0.00 0.00 0.00 0.98
1213 1478 6.486657 ACAACGCCTTGCATCTACATAATAAT 59.513 34.615 0.00 0.00 0.00 1.28
1254 1519 1.202734 ACCGATGCAATCTGGATCCTG 60.203 52.381 14.23 13.20 41.43 3.86
1281 1546 6.033341 TGCAACATTTAACACAGTTTCTGTC 58.967 36.000 0.00 0.00 43.43 3.51
1288 1553 4.057432 GGCATTGCAACATTTAACACAGT 58.943 39.130 11.39 0.00 0.00 3.55
1379 1644 2.966708 CTGTTTTTCTGCACGTTCATCG 59.033 45.455 0.00 0.00 46.00 3.84
1392 1657 6.681777 ACATATTCAAGGCTCACTGTTTTTC 58.318 36.000 0.00 0.00 0.00 2.29
1413 1678 8.588290 TTTTTATTGGTCCATGCTAGTTACAT 57.412 30.769 0.00 0.00 0.00 2.29
1493 1769 6.216251 ACATATACAAGGAGCACCATCCATAT 59.784 38.462 2.07 0.00 42.26 1.78
1497 1773 4.357918 ACATATACAAGGAGCACCATCC 57.642 45.455 2.07 0.00 39.89 3.51
1498 1774 5.368145 TCAACATATACAAGGAGCACCATC 58.632 41.667 2.07 0.00 38.94 3.51
1499 1775 5.372343 TCAACATATACAAGGAGCACCAT 57.628 39.130 2.07 0.00 38.94 3.55
1500 1776 4.835284 TCAACATATACAAGGAGCACCA 57.165 40.909 2.07 0.00 38.94 4.17
1501 1777 7.148573 CGATAATCAACATATACAAGGAGCACC 60.149 40.741 0.00 0.00 0.00 5.01
1536 3204 5.836358 TGGCCTTTTAGACCAGTTTTTGTAT 59.164 36.000 3.32 0.00 0.00 2.29
1537 3205 5.202004 TGGCCTTTTAGACCAGTTTTTGTA 58.798 37.500 3.32 0.00 0.00 2.41
1538 3206 4.027437 TGGCCTTTTAGACCAGTTTTTGT 58.973 39.130 3.32 0.00 0.00 2.83
1539 3207 4.620982 CTGGCCTTTTAGACCAGTTTTTG 58.379 43.478 3.32 0.00 44.91 2.44
1540 3208 4.937201 CTGGCCTTTTAGACCAGTTTTT 57.063 40.909 3.32 0.00 44.91 1.94
1546 3214 1.382629 GGCCTGGCCTTTTAGACCA 59.617 57.895 30.42 0.00 46.69 4.02
1547 3215 4.338815 GGCCTGGCCTTTTAGACC 57.661 61.111 30.42 0.00 46.69 3.85
1557 3225 0.461961 CGGCTAGATATAGGCCTGGC 59.538 60.000 17.99 11.05 43.29 4.85
1558 3226 2.028130 CTCGGCTAGATATAGGCCTGG 58.972 57.143 17.99 2.12 43.29 4.45
1559 3227 2.685897 GACTCGGCTAGATATAGGCCTG 59.314 54.545 17.99 10.03 43.29 4.85
1560 3228 2.357361 GGACTCGGCTAGATATAGGCCT 60.357 54.545 11.78 11.78 43.29 5.19
1561 3229 2.025898 GGACTCGGCTAGATATAGGCC 58.974 57.143 14.61 0.00 42.18 5.19
1562 3230 2.025898 GGGACTCGGCTAGATATAGGC 58.974 57.143 10.74 10.74 39.03 3.93
1563 3231 2.093075 TCGGGACTCGGCTAGATATAGG 60.093 54.545 0.00 0.00 39.77 2.57
1564 3232 3.118702 TCTCGGGACTCGGCTAGATATAG 60.119 52.174 0.00 0.00 39.77 1.31
1565 3233 2.836372 TCTCGGGACTCGGCTAGATATA 59.164 50.000 0.00 0.00 39.77 0.86
1566 3234 1.629353 TCTCGGGACTCGGCTAGATAT 59.371 52.381 0.00 0.00 39.77 1.63
1567 3235 1.054231 TCTCGGGACTCGGCTAGATA 58.946 55.000 0.00 0.00 39.77 1.98
1568 3236 0.183014 TTCTCGGGACTCGGCTAGAT 59.817 55.000 0.00 0.00 39.77 1.98
1569 3237 0.034767 TTTCTCGGGACTCGGCTAGA 60.035 55.000 0.00 0.00 39.77 2.43
1570 3238 0.815734 TTTTCTCGGGACTCGGCTAG 59.184 55.000 0.00 0.00 39.77 3.42
1571 3239 1.259609 TTTTTCTCGGGACTCGGCTA 58.740 50.000 0.00 0.00 39.77 3.93
1572 3240 2.055299 TTTTTCTCGGGACTCGGCT 58.945 52.632 0.00 0.00 39.77 5.52
1573 3241 4.687464 TTTTTCTCGGGACTCGGC 57.313 55.556 0.00 0.00 39.77 5.54
1626 3294 9.533253 CCAACATCATTATTTTATCCCAAAGTC 57.467 33.333 0.00 0.00 0.00 3.01
1627 3295 9.265862 TCCAACATCATTATTTTATCCCAAAGT 57.734 29.630 0.00 0.00 0.00 2.66
1643 3311 9.439500 CCAAAATAGACAAAATTCCAACATCAT 57.561 29.630 0.00 0.00 0.00 2.45
1644 3312 7.877097 CCCAAAATAGACAAAATTCCAACATCA 59.123 33.333 0.00 0.00 0.00 3.07
1645 3313 7.148423 GCCCAAAATAGACAAAATTCCAACATC 60.148 37.037 0.00 0.00 0.00 3.06
1646 3314 6.654582 GCCCAAAATAGACAAAATTCCAACAT 59.345 34.615 0.00 0.00 0.00 2.71
1647 3315 5.994668 GCCCAAAATAGACAAAATTCCAACA 59.005 36.000 0.00 0.00 0.00 3.33
1648 3316 5.411361 GGCCCAAAATAGACAAAATTCCAAC 59.589 40.000 0.00 0.00 0.00 3.77
1649 3317 5.072329 TGGCCCAAAATAGACAAAATTCCAA 59.928 36.000 0.00 0.00 0.00 3.53
1736 3404 2.912956 ACTTTAGTCCCATCTCTTGCCA 59.087 45.455 0.00 0.00 0.00 4.92
1745 3413 6.681729 TGTGAGACTAAACTTTAGTCCCAT 57.318 37.500 27.43 15.86 43.61 4.00
1749 3417 7.659652 AGCAATGTGAGACTAAACTTTAGTC 57.340 36.000 25.23 25.23 43.08 2.59
1764 3432 2.107378 TCCCACCAAACTAGCAATGTGA 59.893 45.455 5.03 0.00 0.00 3.58
1769 3437 2.582052 CAACTCCCACCAAACTAGCAA 58.418 47.619 0.00 0.00 0.00 3.91
1801 3475 7.734924 TGCTCATACATGTGAGAAAATATCC 57.265 36.000 15.56 0.00 46.77 2.59
1805 3479 7.052248 TCTCATGCTCATACATGTGAGAAAAT 58.948 34.615 15.56 4.76 46.77 1.82
1809 3483 5.105228 TGTTCTCATGCTCATACATGTGAGA 60.105 40.000 15.56 10.12 45.82 3.27
1811 3485 5.088680 TGTTCTCATGCTCATACATGTGA 57.911 39.130 9.11 5.04 46.15 3.58
1839 3513 1.215655 GAGGAGCGCGCGTGAATATT 61.216 55.000 32.35 4.88 0.00 1.28
1841 3515 2.278596 GAGGAGCGCGCGTGAATA 60.279 61.111 32.35 0.00 0.00 1.75
1852 3526 4.475135 GGTTGGCGGAGGAGGAGC 62.475 72.222 0.00 0.00 0.00 4.70
1905 3589 4.899239 GTGAGAGGGCGGCGATGG 62.899 72.222 12.98 0.00 0.00 3.51
1912 3767 1.671901 GAGAAGGAGGTGAGAGGGCG 61.672 65.000 0.00 0.00 0.00 6.13
1936 3791 4.648307 CCGTACAGGACTCCTTTTATAGGT 59.352 45.833 0.00 0.00 43.44 3.08
1946 3801 1.104630 CTTCTCCCGTACAGGACTCC 58.895 60.000 0.00 0.00 45.00 3.85
1974 3982 0.467290 TGAAGCGCTCCCCAAAAACT 60.467 50.000 12.06 0.00 0.00 2.66
1991 3999 5.592104 TGAAGAAGTCAGTAGTTGTGTGA 57.408 39.130 0.00 0.00 0.00 3.58
1995 4003 5.223382 CGTGATGAAGAAGTCAGTAGTTGT 58.777 41.667 0.00 0.00 40.43 3.32
1997 4005 4.523173 TCCGTGATGAAGAAGTCAGTAGTT 59.477 41.667 0.00 0.00 40.43 2.24
1998 4006 4.079970 TCCGTGATGAAGAAGTCAGTAGT 58.920 43.478 0.00 0.00 40.43 2.73
1999 4007 4.416620 GTCCGTGATGAAGAAGTCAGTAG 58.583 47.826 0.00 0.00 40.43 2.57
2000 4008 3.119955 CGTCCGTGATGAAGAAGTCAGTA 60.120 47.826 0.00 0.00 40.43 2.74
2049 4057 0.731514 TCGATGAGTTTGCCGACGTC 60.732 55.000 5.18 5.18 0.00 4.34
2056 4064 2.855180 CCATGTTGTCGATGAGTTTGC 58.145 47.619 0.00 0.00 0.00 3.68
2060 4068 1.676916 CCAGCCATGTTGTCGATGAGT 60.677 52.381 0.00 0.00 0.00 3.41
2070 4078 1.452651 CATCCTCGCCAGCCATGTT 60.453 57.895 0.00 0.00 0.00 2.71
2090 4098 2.358737 GCACTGGACTTGGGGTCG 60.359 66.667 0.00 0.00 45.35 4.79
2102 4110 1.664659 GCAGCATCAGTAGAAGCACTG 59.335 52.381 0.00 0.00 46.04 3.66
2112 4120 0.603065 TACGTGACAGCAGCATCAGT 59.397 50.000 0.00 1.80 0.00 3.41
2116 4124 1.289066 ACGTACGTGACAGCAGCAT 59.711 52.632 22.14 0.00 0.00 3.79
2127 4135 2.503920 AAGAGCAAGAACACGTACGT 57.496 45.000 16.72 16.72 0.00 3.57
2174 4182 3.672338 TAGGGCGGGCACTAGAGCA 62.672 63.158 14.31 0.00 35.83 4.26
2184 4192 3.782656 ACCTAAAATATGTAGGGCGGG 57.217 47.619 14.41 0.00 42.23 6.13
2186 4194 6.756221 AGTAGAACCTAAAATATGTAGGGCG 58.244 40.000 14.41 0.00 42.23 6.13
2213 4221 7.169982 GGACACTAGATCAAGTTGTGCATATAC 59.830 40.741 2.11 0.00 32.49 1.47
2222 4230 7.776107 TCTAGAATGGACACTAGATCAAGTTG 58.224 38.462 0.00 0.00 39.71 3.16
2223 4231 7.962995 TCTAGAATGGACACTAGATCAAGTT 57.037 36.000 0.00 0.00 39.71 2.66
2239 4247 7.664082 ACTTGAACTGAACACATCTAGAATG 57.336 36.000 0.00 0.74 0.00 2.67
2273 4281 7.550551 TGACAAAGAGAAGGTAAATAGCATCTG 59.449 37.037 2.49 0.00 32.68 2.90
2290 4298 5.450171 CAAGTCAAGCAATCTGACAAAGAG 58.550 41.667 5.81 0.00 38.67 2.85
2294 4302 3.216800 AGCAAGTCAAGCAATCTGACAA 58.783 40.909 5.81 0.00 35.23 3.18
2298 4306 6.093771 AGAGATAAAGCAAGTCAAGCAATCTG 59.906 38.462 0.00 0.00 32.24 2.90
2304 4312 3.688673 AGCAGAGATAAAGCAAGTCAAGC 59.311 43.478 0.00 0.00 0.00 4.01
2305 4313 8.830201 ATATAGCAGAGATAAAGCAAGTCAAG 57.170 34.615 0.00 0.00 0.00 3.02
2370 4380 8.856153 TTGTTAGAAATATGAGCAGTTTACCA 57.144 30.769 0.00 0.00 0.00 3.25
2377 4387 9.859427 TTTTTGGATTGTTAGAAATATGAGCAG 57.141 29.630 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.