Multiple sequence alignment - TraesCS3A01G510600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G510600 chr3A 100.000 3180 0 0 1 3180 730396626 730399805 0.000000e+00 5873.0
1 TraesCS3A01G510600 chr3A 93.066 548 34 2 2637 3180 730230776 730231323 0.000000e+00 798.0
2 TraesCS3A01G510600 chr3A 86.373 499 44 15 1776 2257 729956048 729955557 1.010000e-144 523.0
3 TraesCS3A01G510600 chr3D 89.103 2028 126 41 201 2189 600530490 600528519 0.000000e+00 2433.0
4 TraesCS3A01G510600 chr3D 85.211 1163 120 27 1054 2168 600424562 600423404 0.000000e+00 1147.0
5 TraesCS3A01G510600 chr3D 85.393 178 14 4 2190 2355 600528482 600528305 1.170000e-39 174.0
6 TraesCS3A01G510600 chr3D 94.737 57 3 0 2 58 600531365 600531309 4.370000e-14 89.8
7 TraesCS3A01G510600 chr3D 90.909 44 2 2 2316 2358 600423267 600423225 1.230000e-04 58.4
8 TraesCS3A01G510600 chr3B 89.994 1579 111 20 826 2367 807483555 807481987 0.000000e+00 1997.0
9 TraesCS3A01G510600 chr3B 86.287 1123 133 12 1072 2179 807440845 807439729 0.000000e+00 1201.0
10 TraesCS3A01G510600 chr3B 89.942 517 46 4 733 1244 807501319 807500804 0.000000e+00 662.0
11 TraesCS3A01G510600 chr3B 82.317 328 23 16 126 443 807484048 807483746 5.270000e-63 252.0
12 TraesCS3A01G510600 chr3B 96.296 54 2 0 567 620 807483706 807483653 4.370000e-14 89.8
13 TraesCS3A01G510600 chrUn 86.829 820 100 5 1342 2154 90726701 90725883 0.000000e+00 909.0
14 TraesCS3A01G510600 chrUn 86.829 820 100 5 1342 2154 90939246 90938428 0.000000e+00 909.0
15 TraesCS3A01G510600 chrUn 89.458 332 35 0 1342 1673 401026571 401026240 1.360000e-113 420.0
16 TraesCS3A01G510600 chr7D 85.459 839 114 5 1342 2173 37234857 37234020 0.000000e+00 867.0
17 TraesCS3A01G510600 chr7D 92.909 550 33 3 2637 3180 597508553 597509102 0.000000e+00 795.0
18 TraesCS3A01G510600 chr7A 84.982 839 118 5 1342 2173 36629972 36629135 0.000000e+00 845.0
19 TraesCS3A01G510600 chr7A 92.364 550 36 3 2637 3180 708423656 708423107 0.000000e+00 778.0
20 TraesCS3A01G510600 chr4A 84.744 839 120 5 1342 2173 689137538 689136701 0.000000e+00 833.0
21 TraesCS3A01G510600 chr4A 93.443 549 31 3 2637 3180 164653385 164653933 0.000000e+00 809.0
22 TraesCS3A01G510600 chr6A 93.889 540 27 3 2645 3178 594651372 594650833 0.000000e+00 809.0
23 TraesCS3A01G510600 chr6A 93.091 550 32 3 2637 3180 5075170 5075719 0.000000e+00 800.0
24 TraesCS3A01G510600 chr1A 93.419 547 32 3 2637 3180 558439272 558439817 0.000000e+00 808.0
25 TraesCS3A01G510600 chr1A 93.419 547 31 4 2637 3180 541074849 541075393 0.000000e+00 806.0
26 TraesCS3A01G510600 chr2A 93.078 549 33 2 2637 3180 758383885 758383337 0.000000e+00 798.0
27 TraesCS3A01G510600 chr7B 88.889 54 5 1 2446 2498 748618143 748618090 7.360000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G510600 chr3A 730396626 730399805 3179 False 5873.000000 5873 100.000000 1 3180 1 chr3A.!!$F2 3179
1 TraesCS3A01G510600 chr3A 730230776 730231323 547 False 798.000000 798 93.066000 2637 3180 1 chr3A.!!$F1 543
2 TraesCS3A01G510600 chr3D 600528305 600531365 3060 True 898.933333 2433 89.744333 2 2355 3 chr3D.!!$R2 2353
3 TraesCS3A01G510600 chr3D 600423225 600424562 1337 True 602.700000 1147 88.060000 1054 2358 2 chr3D.!!$R1 1304
4 TraesCS3A01G510600 chr3B 807439729 807440845 1116 True 1201.000000 1201 86.287000 1072 2179 1 chr3B.!!$R1 1107
5 TraesCS3A01G510600 chr3B 807481987 807484048 2061 True 779.600000 1997 89.535667 126 2367 3 chr3B.!!$R3 2241
6 TraesCS3A01G510600 chr3B 807500804 807501319 515 True 662.000000 662 89.942000 733 1244 1 chr3B.!!$R2 511
7 TraesCS3A01G510600 chrUn 90725883 90726701 818 True 909.000000 909 86.829000 1342 2154 1 chrUn.!!$R1 812
8 TraesCS3A01G510600 chrUn 90938428 90939246 818 True 909.000000 909 86.829000 1342 2154 1 chrUn.!!$R2 812
9 TraesCS3A01G510600 chr7D 37234020 37234857 837 True 867.000000 867 85.459000 1342 2173 1 chr7D.!!$R1 831
10 TraesCS3A01G510600 chr7D 597508553 597509102 549 False 795.000000 795 92.909000 2637 3180 1 chr7D.!!$F1 543
11 TraesCS3A01G510600 chr7A 36629135 36629972 837 True 845.000000 845 84.982000 1342 2173 1 chr7A.!!$R1 831
12 TraesCS3A01G510600 chr7A 708423107 708423656 549 True 778.000000 778 92.364000 2637 3180 1 chr7A.!!$R2 543
13 TraesCS3A01G510600 chr4A 689136701 689137538 837 True 833.000000 833 84.744000 1342 2173 1 chr4A.!!$R1 831
14 TraesCS3A01G510600 chr4A 164653385 164653933 548 False 809.000000 809 93.443000 2637 3180 1 chr4A.!!$F1 543
15 TraesCS3A01G510600 chr6A 594650833 594651372 539 True 809.000000 809 93.889000 2645 3178 1 chr6A.!!$R1 533
16 TraesCS3A01G510600 chr6A 5075170 5075719 549 False 800.000000 800 93.091000 2637 3180 1 chr6A.!!$F1 543
17 TraesCS3A01G510600 chr1A 558439272 558439817 545 False 808.000000 808 93.419000 2637 3180 1 chr1A.!!$F2 543
18 TraesCS3A01G510600 chr1A 541074849 541075393 544 False 806.000000 806 93.419000 2637 3180 1 chr1A.!!$F1 543
19 TraesCS3A01G510600 chr2A 758383337 758383885 548 True 798.000000 798 93.078000 2637 3180 1 chr2A.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 170 0.179097 GGTGTGATCTTCTCCCGCTC 60.179 60.0 0.0 0.0 0.0 5.03 F
823 1523 0.255604 ATGTCCGTCCATCCATGCAA 59.744 50.0 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1876 0.179108 GCTGCCGGTAGAAGTCGAAT 60.179 55.0 25.04 0.0 0.00 3.34 R
2411 3253 0.035534 TGGCTGTGTGCATCGGTAAT 60.036 50.0 0.00 0.0 45.15 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.048732 TGATTCTCATGCCTTGTACACTAA 57.951 37.500 0.00 0.00 0.00 2.24
62 63 6.697641 AATTCTTTTAGTAGGAGGGTGTGA 57.302 37.500 0.00 0.00 0.00 3.58
65 66 4.530946 TCTTTTAGTAGGAGGGTGTGAAGG 59.469 45.833 0.00 0.00 0.00 3.46
66 67 2.544844 TAGTAGGAGGGTGTGAAGGG 57.455 55.000 0.00 0.00 0.00 3.95
68 69 0.903236 GTAGGAGGGTGTGAAGGGAC 59.097 60.000 0.00 0.00 0.00 4.46
69 70 0.613853 TAGGAGGGTGTGAAGGGACG 60.614 60.000 0.00 0.00 0.00 4.79
70 71 2.214920 GGAGGGTGTGAAGGGACGT 61.215 63.158 0.00 0.00 0.00 4.34
71 72 1.004918 GAGGGTGTGAAGGGACGTG 60.005 63.158 0.00 0.00 0.00 4.49
107 108 4.568359 GCAATACCCGATCATATGTGCTAG 59.432 45.833 1.90 0.00 0.00 3.42
151 170 0.179097 GGTGTGATCTTCTCCCGCTC 60.179 60.000 0.00 0.00 0.00 5.03
152 171 0.532573 GTGTGATCTTCTCCCGCTCA 59.467 55.000 0.00 0.00 0.00 4.26
163 182 3.572642 TCTCCCGCTCAGTGGATTATTA 58.427 45.455 5.57 0.00 34.74 0.98
231 921 2.887337 ACACAAAAGAAACAAAGGCGG 58.113 42.857 0.00 0.00 0.00 6.13
238 928 2.159382 AGAAACAAAGGCGGTATGGTG 58.841 47.619 0.00 0.00 0.00 4.17
239 929 1.201414 GAAACAAAGGCGGTATGGTGG 59.799 52.381 0.00 0.00 0.00 4.61
249 939 2.292267 CGGTATGGTGGTCGTAGTACT 58.708 52.381 0.00 0.00 0.00 2.73
337 1031 2.039974 TGCCATGCATGTGTCGTCC 61.040 57.895 24.58 5.22 31.71 4.79
376 1070 1.597854 CTGCTTCAGTTCACGGGCA 60.598 57.895 0.00 0.00 0.00 5.36
417 1111 1.204941 GTCGAAGCCATGTCACCTACT 59.795 52.381 0.00 0.00 0.00 2.57
418 1112 1.204704 TCGAAGCCATGTCACCTACTG 59.795 52.381 0.00 0.00 0.00 2.74
420 1114 2.165641 CGAAGCCATGTCACCTACTGTA 59.834 50.000 0.00 0.00 0.00 2.74
421 1115 3.522553 GAAGCCATGTCACCTACTGTAC 58.477 50.000 0.00 0.00 0.00 2.90
422 1116 2.536066 AGCCATGTCACCTACTGTACA 58.464 47.619 0.00 0.00 0.00 2.90
423 1117 3.107601 AGCCATGTCACCTACTGTACAT 58.892 45.455 0.00 0.00 32.91 2.29
424 1118 3.133003 AGCCATGTCACCTACTGTACATC 59.867 47.826 0.00 0.00 30.32 3.06
454 1148 0.801067 GTACGTGGACAAGCTAGCGG 60.801 60.000 9.55 8.52 0.00 5.52
482 1176 4.329256 GCCTTGACTTGTTTATAGTCGTCC 59.671 45.833 0.00 0.00 43.90 4.79
483 1177 4.868734 CCTTGACTTGTTTATAGTCGTCCC 59.131 45.833 0.00 0.00 43.90 4.46
484 1178 5.337330 CCTTGACTTGTTTATAGTCGTCCCT 60.337 44.000 0.00 0.00 43.90 4.20
519 1213 4.302455 GTGGTATCAGTCCGATGATGAAG 58.698 47.826 7.68 0.00 40.16 3.02
540 1234 1.050009 CGCACCATATACGTACGCTG 58.950 55.000 16.72 7.90 0.00 5.18
551 1245 0.386352 CGTACGCTGACGGTTCTTCA 60.386 55.000 0.52 0.00 46.04 3.02
552 1246 1.058404 GTACGCTGACGGTTCTTCAC 58.942 55.000 0.00 0.00 46.04 3.18
562 1256 1.202582 CGGTTCTTCACGTCCATCTCT 59.797 52.381 0.00 0.00 0.00 3.10
573 1267 1.767681 GTCCATCTCTGCCTCCATCTT 59.232 52.381 0.00 0.00 0.00 2.40
584 1278 1.635487 CCTCCATCTTCTTGGGTTGGA 59.365 52.381 0.00 0.00 37.37 3.53
622 1322 0.656259 CCTGCATGCTCAACTGATCG 59.344 55.000 20.33 0.00 0.00 3.69
623 1323 1.366679 CTGCATGCTCAACTGATCGT 58.633 50.000 20.33 0.00 0.00 3.73
624 1324 2.543641 CTGCATGCTCAACTGATCGTA 58.456 47.619 20.33 0.00 0.00 3.43
637 1337 2.776765 CTGATCGTAGTACGTCTTTGCG 59.223 50.000 21.38 0.00 43.14 4.85
638 1338 2.416202 TGATCGTAGTACGTCTTTGCGA 59.584 45.455 21.38 8.84 43.14 5.10
639 1339 2.515641 TCGTAGTACGTCTTTGCGAG 57.484 50.000 21.38 0.00 43.14 5.03
640 1340 2.068519 TCGTAGTACGTCTTTGCGAGA 58.931 47.619 21.38 0.00 43.14 4.04
659 1359 0.673333 AGCCGATTCACACAATGCGA 60.673 50.000 0.00 0.00 0.00 5.10
706 1406 8.338072 TGAACAACTTACTAAACAAACCTTGA 57.662 30.769 0.00 0.00 0.00 3.02
723 1423 8.560374 CAAACCTTGAAAGTAAAGAAGAGGTAG 58.440 37.037 0.00 0.00 35.34 3.18
724 1424 7.613551 ACCTTGAAAGTAAAGAAGAGGTAGA 57.386 36.000 0.00 0.00 34.68 2.59
725 1425 8.208575 ACCTTGAAAGTAAAGAAGAGGTAGAT 57.791 34.615 0.00 0.00 34.68 1.98
726 1426 9.322769 ACCTTGAAAGTAAAGAAGAGGTAGATA 57.677 33.333 0.00 0.00 34.68 1.98
759 1459 6.827586 ACGGATAGATAGGATCTCTTGTTC 57.172 41.667 0.00 0.00 40.76 3.18
766 1466 7.176589 AGATAGGATCTCTTGTTCGTTTCTT 57.823 36.000 0.00 0.00 33.42 2.52
769 1469 5.480205 AGGATCTCTTGTTCGTTTCTTACC 58.520 41.667 0.00 0.00 0.00 2.85
815 1515 1.688735 ACGATCATCATGTCCGTCCAT 59.311 47.619 0.00 0.00 0.00 3.41
816 1516 2.288457 ACGATCATCATGTCCGTCCATC 60.288 50.000 0.00 0.00 0.00 3.51
823 1523 0.255604 ATGTCCGTCCATCCATGCAA 59.744 50.000 0.00 0.00 0.00 4.08
868 1568 2.177531 CCTCCCACGTACGTGTCG 59.822 66.667 37.86 29.04 44.02 4.35
897 1597 2.277756 GCGTCCGCGTCGTCTATT 60.278 61.111 18.76 0.00 40.81 1.73
999 1711 2.929398 GAGAAGCAAAGCAGTAGAGAGC 59.071 50.000 0.00 0.00 0.00 4.09
1029 1741 3.589881 GCCCCTATGCTTGCAGCG 61.590 66.667 0.87 0.00 46.26 5.18
1031 1743 2.124570 CCCTATGCTTGCAGCGGT 60.125 61.111 0.87 0.00 46.26 5.68
1070 1782 1.961180 CTTGGGTCTGTAGGGGCGAG 61.961 65.000 0.00 0.00 0.00 5.03
1117 1856 1.890894 GACGACTTGAGGCAGCCTA 59.109 57.895 16.16 0.00 31.76 3.93
1156 1895 0.179108 ATTCGACTTCTACCGGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
1157 1896 1.248785 TTCGACTTCTACCGGCAGCT 61.249 55.000 0.00 0.00 0.00 4.24
1196 1935 1.863662 ATCGTGCGTGACTTCGTCCT 61.864 55.000 0.00 0.00 0.00 3.85
1314 2058 2.947448 GTTGATTGCCTCCCATCAAC 57.053 50.000 8.78 8.78 43.71 3.18
1334 2099 3.124270 ATTCATGAACGCGCCGCA 61.124 55.556 11.07 1.45 0.00 5.69
1465 2236 2.677524 AACGACATCCGGGACCGA 60.678 61.111 13.13 0.00 43.93 4.69
1546 2317 3.371063 GACTCCGTGGTCGCCTCA 61.371 66.667 0.00 0.00 35.54 3.86
1759 2536 1.516386 CACATCCTTCGACGACCGG 60.516 63.158 0.00 0.00 39.14 5.28
1768 2545 3.379445 GACGACCGGCTCTTCCCA 61.379 66.667 0.00 0.00 0.00 4.37
1910 2687 2.037144 ACTACGTGAACCTGGTGAACT 58.963 47.619 0.00 0.00 0.00 3.01
2099 2876 3.807631 AACTGCTCCGCTCGCAACA 62.808 57.895 0.00 0.00 36.88 3.33
2217 3035 3.312146 TGTTAGCCATGCATGTCGTAATG 59.688 43.478 24.58 9.02 0.00 1.90
2259 3101 3.346315 TGGTTGATGAGGCTGTGTAATG 58.654 45.455 0.00 0.00 0.00 1.90
2295 3137 1.376037 AAACGTCTGCTAGGCTGCC 60.376 57.895 11.65 11.65 0.00 4.85
2359 3201 7.064609 TCGATGCTTATGTTTCCTTGTTTCTAG 59.935 37.037 0.00 0.00 0.00 2.43
2367 3209 6.130569 TGTTTCCTTGTTTCTAGCCCTTTTA 58.869 36.000 0.00 0.00 0.00 1.52
2368 3210 6.780522 TGTTTCCTTGTTTCTAGCCCTTTTAT 59.219 34.615 0.00 0.00 0.00 1.40
2369 3211 7.039993 TGTTTCCTTGTTTCTAGCCCTTTTATC 60.040 37.037 0.00 0.00 0.00 1.75
2370 3212 5.183228 TCCTTGTTTCTAGCCCTTTTATCG 58.817 41.667 0.00 0.00 0.00 2.92
2371 3213 4.201920 CCTTGTTTCTAGCCCTTTTATCGC 60.202 45.833 0.00 0.00 0.00 4.58
2372 3214 2.933906 TGTTTCTAGCCCTTTTATCGCG 59.066 45.455 0.00 0.00 0.00 5.87
2373 3215 2.234300 TTCTAGCCCTTTTATCGCGG 57.766 50.000 6.13 0.00 0.00 6.46
2374 3216 1.405872 TCTAGCCCTTTTATCGCGGA 58.594 50.000 6.13 0.00 0.00 5.54
2375 3217 1.968493 TCTAGCCCTTTTATCGCGGAT 59.032 47.619 6.13 0.75 0.00 4.18
2376 3218 2.367567 TCTAGCCCTTTTATCGCGGATT 59.632 45.455 6.13 0.00 0.00 3.01
2377 3219 2.922740 AGCCCTTTTATCGCGGATTA 57.077 45.000 6.13 0.00 0.00 1.75
2378 3220 2.490991 AGCCCTTTTATCGCGGATTAC 58.509 47.619 6.13 0.00 0.00 1.89
2379 3221 2.158871 AGCCCTTTTATCGCGGATTACA 60.159 45.455 6.13 0.00 0.00 2.41
2380 3222 2.032290 GCCCTTTTATCGCGGATTACAC 60.032 50.000 6.13 0.00 0.00 2.90
2381 3223 2.546789 CCCTTTTATCGCGGATTACACC 59.453 50.000 6.13 0.00 0.00 4.16
2382 3224 2.546789 CCTTTTATCGCGGATTACACCC 59.453 50.000 6.13 0.00 0.00 4.61
2383 3225 2.983907 TTTATCGCGGATTACACCCA 57.016 45.000 6.13 0.00 0.00 4.51
2384 3226 2.519377 TTATCGCGGATTACACCCAG 57.481 50.000 6.13 0.00 0.00 4.45
2385 3227 0.032952 TATCGCGGATTACACCCAGC 59.967 55.000 6.13 0.00 0.00 4.85
2386 3228 2.660258 ATCGCGGATTACACCCAGCC 62.660 60.000 6.13 0.00 0.00 4.85
2387 3229 2.590092 GCGGATTACACCCAGCCT 59.410 61.111 0.00 0.00 0.00 4.58
2388 3230 1.523938 GCGGATTACACCCAGCCTC 60.524 63.158 0.00 0.00 0.00 4.70
2389 3231 1.904771 CGGATTACACCCAGCCTCA 59.095 57.895 0.00 0.00 0.00 3.86
2390 3232 0.251916 CGGATTACACCCAGCCTCAA 59.748 55.000 0.00 0.00 0.00 3.02
2391 3233 1.751437 GGATTACACCCAGCCTCAAC 58.249 55.000 0.00 0.00 0.00 3.18
2392 3234 1.004277 GGATTACACCCAGCCTCAACA 59.996 52.381 0.00 0.00 0.00 3.33
2393 3235 2.554344 GGATTACACCCAGCCTCAACAA 60.554 50.000 0.00 0.00 0.00 2.83
2394 3236 1.975660 TTACACCCAGCCTCAACAAC 58.024 50.000 0.00 0.00 0.00 3.32
2395 3237 0.250124 TACACCCAGCCTCAACAACG 60.250 55.000 0.00 0.00 0.00 4.10
2396 3238 2.594592 ACCCAGCCTCAACAACGC 60.595 61.111 0.00 0.00 0.00 4.84
2397 3239 2.594303 CCCAGCCTCAACAACGCA 60.594 61.111 0.00 0.00 0.00 5.24
2398 3240 2.192861 CCCAGCCTCAACAACGCAA 61.193 57.895 0.00 0.00 0.00 4.85
2399 3241 1.526575 CCCAGCCTCAACAACGCAAT 61.527 55.000 0.00 0.00 0.00 3.56
2400 3242 0.109597 CCAGCCTCAACAACGCAATC 60.110 55.000 0.00 0.00 0.00 2.67
2401 3243 0.877071 CAGCCTCAACAACGCAATCT 59.123 50.000 0.00 0.00 0.00 2.40
2402 3244 0.877071 AGCCTCAACAACGCAATCTG 59.123 50.000 0.00 0.00 0.00 2.90
2403 3245 0.874390 GCCTCAACAACGCAATCTGA 59.126 50.000 0.00 0.00 0.00 3.27
2404 3246 1.400242 GCCTCAACAACGCAATCTGAC 60.400 52.381 0.00 0.00 0.00 3.51
2405 3247 1.872952 CCTCAACAACGCAATCTGACA 59.127 47.619 0.00 0.00 0.00 3.58
2406 3248 2.290367 CCTCAACAACGCAATCTGACAA 59.710 45.455 0.00 0.00 0.00 3.18
2407 3249 3.243035 CCTCAACAACGCAATCTGACAAA 60.243 43.478 0.00 0.00 0.00 2.83
2408 3250 3.951306 TCAACAACGCAATCTGACAAAG 58.049 40.909 0.00 0.00 0.00 2.77
2409 3251 3.625313 TCAACAACGCAATCTGACAAAGA 59.375 39.130 0.00 0.00 39.94 2.52
2410 3252 3.609103 ACAACGCAATCTGACAAAGAC 57.391 42.857 0.00 0.00 37.88 3.01
2411 3253 2.942376 ACAACGCAATCTGACAAAGACA 59.058 40.909 0.00 0.00 37.88 3.41
2412 3254 3.565482 ACAACGCAATCTGACAAAGACAT 59.435 39.130 0.00 0.00 37.88 3.06
2413 3255 4.036734 ACAACGCAATCTGACAAAGACATT 59.963 37.500 0.00 0.00 37.88 2.71
2414 3256 5.238432 ACAACGCAATCTGACAAAGACATTA 59.762 36.000 0.00 0.00 37.88 1.90
2415 3257 5.283060 ACGCAATCTGACAAAGACATTAC 57.717 39.130 0.00 0.00 37.88 1.89
2416 3258 4.154195 ACGCAATCTGACAAAGACATTACC 59.846 41.667 0.00 0.00 37.88 2.85
2417 3259 4.651994 GCAATCTGACAAAGACATTACCG 58.348 43.478 0.00 0.00 37.88 4.02
2418 3260 4.391830 GCAATCTGACAAAGACATTACCGA 59.608 41.667 0.00 0.00 37.88 4.69
2419 3261 5.065218 GCAATCTGACAAAGACATTACCGAT 59.935 40.000 0.00 0.00 37.88 4.18
2420 3262 6.481134 CAATCTGACAAAGACATTACCGATG 58.519 40.000 0.00 0.00 37.88 3.84
2421 3263 3.932710 TCTGACAAAGACATTACCGATGC 59.067 43.478 0.00 0.00 39.47 3.91
2422 3264 3.669536 TGACAAAGACATTACCGATGCA 58.330 40.909 0.00 0.00 39.47 3.96
2423 3265 3.435327 TGACAAAGACATTACCGATGCAC 59.565 43.478 0.00 0.00 39.47 4.57
2424 3266 3.407698 ACAAAGACATTACCGATGCACA 58.592 40.909 0.00 0.00 39.47 4.57
2425 3267 3.188460 ACAAAGACATTACCGATGCACAC 59.812 43.478 0.00 0.00 39.47 3.82
2426 3268 2.760634 AGACATTACCGATGCACACA 57.239 45.000 0.00 0.00 39.47 3.72
2427 3269 2.621338 AGACATTACCGATGCACACAG 58.379 47.619 0.00 0.00 39.47 3.66
2428 3270 1.062587 GACATTACCGATGCACACAGC 59.937 52.381 0.00 0.00 45.96 4.40
2429 3271 0.378257 CATTACCGATGCACACAGCC 59.622 55.000 0.00 0.00 44.83 4.85
2430 3272 0.035534 ATTACCGATGCACACAGCCA 60.036 50.000 0.00 0.00 44.83 4.75
2431 3273 0.250510 TTACCGATGCACACAGCCAA 60.251 50.000 0.00 0.00 44.83 4.52
2432 3274 0.953471 TACCGATGCACACAGCCAAC 60.953 55.000 0.00 0.00 44.83 3.77
2433 3275 2.174107 CGATGCACACAGCCAACG 59.826 61.111 0.00 0.00 44.83 4.10
2434 3276 2.316867 CGATGCACACAGCCAACGA 61.317 57.895 0.00 0.00 44.83 3.85
2435 3277 1.207593 GATGCACACAGCCAACGAC 59.792 57.895 0.00 0.00 44.83 4.34
2436 3278 1.506309 GATGCACACAGCCAACGACA 61.506 55.000 0.00 0.00 44.83 4.35
2437 3279 1.509644 ATGCACACAGCCAACGACAG 61.510 55.000 0.00 0.00 44.83 3.51
2438 3280 2.180204 GCACACAGCCAACGACAGT 61.180 57.895 0.00 0.00 37.23 3.55
2439 3281 0.878523 GCACACAGCCAACGACAGTA 60.879 55.000 0.00 0.00 37.23 2.74
2440 3282 1.577468 CACACAGCCAACGACAGTAA 58.423 50.000 0.00 0.00 0.00 2.24
2441 3283 1.937223 CACACAGCCAACGACAGTAAA 59.063 47.619 0.00 0.00 0.00 2.01
2442 3284 2.353269 CACACAGCCAACGACAGTAAAA 59.647 45.455 0.00 0.00 0.00 1.52
2443 3285 3.011119 ACACAGCCAACGACAGTAAAAA 58.989 40.909 0.00 0.00 0.00 1.94
2444 3286 3.064820 ACACAGCCAACGACAGTAAAAAG 59.935 43.478 0.00 0.00 0.00 2.27
2445 3287 3.311322 CACAGCCAACGACAGTAAAAAGA 59.689 43.478 0.00 0.00 0.00 2.52
2446 3288 3.942748 ACAGCCAACGACAGTAAAAAGAA 59.057 39.130 0.00 0.00 0.00 2.52
2447 3289 4.396790 ACAGCCAACGACAGTAAAAAGAAA 59.603 37.500 0.00 0.00 0.00 2.52
2448 3290 5.106078 ACAGCCAACGACAGTAAAAAGAAAA 60.106 36.000 0.00 0.00 0.00 2.29
2449 3291 5.802956 CAGCCAACGACAGTAAAAAGAAAAA 59.197 36.000 0.00 0.00 0.00 1.94
2450 3292 6.020678 CAGCCAACGACAGTAAAAAGAAAAAG 60.021 38.462 0.00 0.00 0.00 2.27
2451 3293 6.031471 GCCAACGACAGTAAAAAGAAAAAGA 58.969 36.000 0.00 0.00 0.00 2.52
2452 3294 6.695713 GCCAACGACAGTAAAAAGAAAAAGAT 59.304 34.615 0.00 0.00 0.00 2.40
2453 3295 7.096599 GCCAACGACAGTAAAAAGAAAAAGATC 60.097 37.037 0.00 0.00 0.00 2.75
2454 3296 7.913297 CCAACGACAGTAAAAAGAAAAAGATCA 59.087 33.333 0.00 0.00 0.00 2.92
2455 3297 9.450807 CAACGACAGTAAAAAGAAAAAGATCAT 57.549 29.630 0.00 0.00 0.00 2.45
2456 3298 9.450807 AACGACAGTAAAAAGAAAAAGATCATG 57.549 29.630 0.00 0.00 0.00 3.07
2457 3299 7.591426 ACGACAGTAAAAAGAAAAAGATCATGC 59.409 33.333 0.00 0.00 0.00 4.06
2458 3300 7.591057 CGACAGTAAAAAGAAAAAGATCATGCA 59.409 33.333 0.00 0.00 0.00 3.96
2459 3301 9.248291 GACAGTAAAAAGAAAAAGATCATGCAA 57.752 29.630 0.00 0.00 0.00 4.08
2460 3302 9.034544 ACAGTAAAAAGAAAAAGATCATGCAAC 57.965 29.630 0.00 0.00 0.00 4.17
2461 3303 9.033481 CAGTAAAAAGAAAAAGATCATGCAACA 57.967 29.630 0.00 0.00 0.00 3.33
2462 3304 9.252962 AGTAAAAAGAAAAAGATCATGCAACAG 57.747 29.630 0.00 0.00 0.00 3.16
2463 3305 9.034544 GTAAAAAGAAAAAGATCATGCAACAGT 57.965 29.630 0.00 0.00 0.00 3.55
2464 3306 7.473027 AAAAGAAAAAGATCATGCAACAGTG 57.527 32.000 0.00 0.00 0.00 3.66
2465 3307 6.395426 AAGAAAAAGATCATGCAACAGTGA 57.605 33.333 0.00 0.00 0.00 3.41
2466 3308 6.585695 AGAAAAAGATCATGCAACAGTGAT 57.414 33.333 0.00 0.12 37.76 3.06
2467 3309 6.618811 AGAAAAAGATCATGCAACAGTGATC 58.381 36.000 16.79 16.79 46.99 2.92
2473 3315 6.807708 GATCATGCAACAGTGATCAATTTC 57.192 37.500 18.76 0.00 46.27 2.17
2474 3316 5.970317 TCATGCAACAGTGATCAATTTCT 57.030 34.783 0.00 0.00 0.00 2.52
2475 3317 6.335471 TCATGCAACAGTGATCAATTTCTT 57.665 33.333 0.00 0.00 0.00 2.52
2476 3318 6.153756 TCATGCAACAGTGATCAATTTCTTG 58.846 36.000 0.00 0.00 0.00 3.02
2477 3319 5.518848 TGCAACAGTGATCAATTTCTTGT 57.481 34.783 0.00 0.00 33.87 3.16
2478 3320 6.631971 TGCAACAGTGATCAATTTCTTGTA 57.368 33.333 0.00 0.00 33.87 2.41
2479 3321 6.671190 TGCAACAGTGATCAATTTCTTGTAG 58.329 36.000 0.00 0.00 33.87 2.74
2480 3322 5.570589 GCAACAGTGATCAATTTCTTGTAGC 59.429 40.000 0.00 0.00 33.87 3.58
2481 3323 6.569226 GCAACAGTGATCAATTTCTTGTAGCT 60.569 38.462 0.00 0.00 33.87 3.32
2482 3324 6.492007 ACAGTGATCAATTTCTTGTAGCTG 57.508 37.500 0.00 0.00 33.87 4.24
2483 3325 5.106396 ACAGTGATCAATTTCTTGTAGCTGC 60.106 40.000 0.00 0.00 33.87 5.25
2484 3326 5.005740 AGTGATCAATTTCTTGTAGCTGCA 58.994 37.500 0.00 0.00 33.87 4.41
2485 3327 5.123502 AGTGATCAATTTCTTGTAGCTGCAG 59.876 40.000 10.11 10.11 33.87 4.41
2486 3328 3.837213 TCAATTTCTTGTAGCTGCAGC 57.163 42.857 31.53 31.53 36.09 5.25
2487 3329 3.148412 TCAATTTCTTGTAGCTGCAGCA 58.852 40.909 38.24 22.31 37.29 4.41
2488 3330 3.760151 TCAATTTCTTGTAGCTGCAGCAT 59.240 39.130 38.24 25.13 37.29 3.79
2489 3331 3.777465 ATTTCTTGTAGCTGCAGCATG 57.223 42.857 38.24 22.18 45.16 4.06
2490 3332 2.477845 TTCTTGTAGCTGCAGCATGA 57.522 45.000 38.24 23.89 45.16 3.07
2491 3333 2.477845 TCTTGTAGCTGCAGCATGAA 57.522 45.000 38.24 24.62 45.16 2.57
2492 3334 2.079158 TCTTGTAGCTGCAGCATGAAC 58.921 47.619 38.24 27.89 45.16 3.18
2493 3335 1.131883 CTTGTAGCTGCAGCATGAACC 59.868 52.381 38.24 19.23 45.16 3.62
2494 3336 0.036590 TGTAGCTGCAGCATGAACCA 59.963 50.000 38.24 21.38 45.16 3.67
2495 3337 1.167851 GTAGCTGCAGCATGAACCAA 58.832 50.000 38.24 11.55 45.16 3.67
2496 3338 1.135575 GTAGCTGCAGCATGAACCAAC 60.136 52.381 38.24 18.52 45.16 3.77
2497 3339 0.824595 AGCTGCAGCATGAACCAACA 60.825 50.000 38.24 0.00 45.16 3.33
2498 3340 0.245539 GCTGCAGCATGAACCAACAT 59.754 50.000 33.36 0.00 39.69 2.71
2499 3341 1.337447 GCTGCAGCATGAACCAACATT 60.337 47.619 33.36 0.00 39.69 2.71
2500 3342 2.868839 GCTGCAGCATGAACCAACATTT 60.869 45.455 33.36 0.00 39.69 2.32
2501 3343 3.614630 GCTGCAGCATGAACCAACATTTA 60.615 43.478 33.36 0.00 39.69 1.40
2502 3344 4.171005 CTGCAGCATGAACCAACATTTAG 58.829 43.478 0.00 0.00 39.69 1.85
2503 3345 3.825585 TGCAGCATGAACCAACATTTAGA 59.174 39.130 0.00 0.00 39.69 2.10
2504 3346 4.463539 TGCAGCATGAACCAACATTTAGAT 59.536 37.500 0.00 0.00 39.69 1.98
2505 3347 5.047164 TGCAGCATGAACCAACATTTAGATT 60.047 36.000 0.00 0.00 39.69 2.40
2506 3348 5.290158 GCAGCATGAACCAACATTTAGATTG 59.710 40.000 0.00 0.00 39.69 2.67
2507 3349 6.392354 CAGCATGAACCAACATTTAGATTGT 58.608 36.000 0.00 0.00 39.69 2.71
2508 3350 7.537715 CAGCATGAACCAACATTTAGATTGTA 58.462 34.615 0.00 0.00 39.69 2.41
2509 3351 7.699391 CAGCATGAACCAACATTTAGATTGTAG 59.301 37.037 0.00 0.00 39.69 2.74
2510 3352 6.473455 GCATGAACCAACATTTAGATTGTAGC 59.527 38.462 0.00 0.00 0.00 3.58
2511 3353 7.629222 GCATGAACCAACATTTAGATTGTAGCT 60.629 37.037 0.00 0.00 0.00 3.32
2512 3354 7.144722 TGAACCAACATTTAGATTGTAGCTG 57.855 36.000 0.00 0.00 0.00 4.24
2513 3355 5.567138 ACCAACATTTAGATTGTAGCTGC 57.433 39.130 0.00 0.00 0.00 5.25
2514 3356 5.009631 ACCAACATTTAGATTGTAGCTGCA 58.990 37.500 0.00 0.00 0.00 4.41
2515 3357 5.124457 ACCAACATTTAGATTGTAGCTGCAG 59.876 40.000 10.11 10.11 0.00 4.41
2516 3358 4.889832 ACATTTAGATTGTAGCTGCAGC 57.110 40.909 31.53 31.53 42.49 5.25
2517 3359 4.264253 ACATTTAGATTGTAGCTGCAGCA 58.736 39.130 38.24 22.31 45.16 4.41
2518 3360 4.885907 ACATTTAGATTGTAGCTGCAGCAT 59.114 37.500 38.24 23.93 45.16 3.79
2519 3361 4.888038 TTTAGATTGTAGCTGCAGCATG 57.112 40.909 38.24 3.48 45.16 4.06
2520 3362 2.704464 AGATTGTAGCTGCAGCATGA 57.296 45.000 38.24 21.40 45.16 3.07
2521 3363 2.995283 AGATTGTAGCTGCAGCATGAA 58.005 42.857 38.24 26.04 45.16 2.57
2522 3364 2.681848 AGATTGTAGCTGCAGCATGAAC 59.318 45.455 38.24 27.89 45.16 3.18
2523 3365 1.167851 TTGTAGCTGCAGCATGAACC 58.832 50.000 38.24 19.23 45.16 3.62
2524 3366 0.036590 TGTAGCTGCAGCATGAACCA 59.963 50.000 38.24 21.38 45.16 3.67
2525 3367 1.167851 GTAGCTGCAGCATGAACCAA 58.832 50.000 38.24 11.55 45.16 3.67
2526 3368 1.135575 GTAGCTGCAGCATGAACCAAC 60.136 52.381 38.24 18.52 45.16 3.77
2527 3369 0.824595 AGCTGCAGCATGAACCAACA 60.825 50.000 38.24 0.00 45.16 3.33
2528 3370 0.245539 GCTGCAGCATGAACCAACAT 59.754 50.000 33.36 0.00 39.69 2.71
2529 3371 1.337447 GCTGCAGCATGAACCAACATT 60.337 47.619 33.36 0.00 39.69 2.71
2530 3372 2.868839 GCTGCAGCATGAACCAACATTT 60.869 45.455 33.36 0.00 39.69 2.32
2531 3373 3.614630 GCTGCAGCATGAACCAACATTTA 60.615 43.478 33.36 0.00 39.69 1.40
2532 3374 4.171005 CTGCAGCATGAACCAACATTTAG 58.829 43.478 0.00 0.00 39.69 1.85
2533 3375 3.056678 TGCAGCATGAACCAACATTTAGG 60.057 43.478 0.00 0.00 39.69 2.69
2534 3376 3.514645 CAGCATGAACCAACATTTAGGC 58.485 45.455 0.00 0.00 39.69 3.93
2535 3377 3.056678 CAGCATGAACCAACATTTAGGCA 60.057 43.478 0.00 0.00 39.69 4.75
2536 3378 3.577848 AGCATGAACCAACATTTAGGCAA 59.422 39.130 0.00 0.00 0.00 4.52
2537 3379 3.928375 GCATGAACCAACATTTAGGCAAG 59.072 43.478 0.00 0.00 0.00 4.01
2538 3380 4.321899 GCATGAACCAACATTTAGGCAAGA 60.322 41.667 0.00 0.00 0.00 3.02
2539 3381 5.404946 CATGAACCAACATTTAGGCAAGAG 58.595 41.667 0.00 0.00 0.00 2.85
2540 3382 3.826157 TGAACCAACATTTAGGCAAGAGG 59.174 43.478 0.00 0.00 0.00 3.69
2541 3383 3.525800 ACCAACATTTAGGCAAGAGGT 57.474 42.857 0.00 0.00 0.00 3.85
2542 3384 3.421844 ACCAACATTTAGGCAAGAGGTC 58.578 45.455 0.00 0.00 0.00 3.85
2543 3385 3.074538 ACCAACATTTAGGCAAGAGGTCT 59.925 43.478 0.00 0.00 34.38 3.85
2544 3386 3.441572 CCAACATTTAGGCAAGAGGTCTG 59.558 47.826 0.00 0.00 30.82 3.51
2545 3387 2.716217 ACATTTAGGCAAGAGGTCTGC 58.284 47.619 0.00 0.00 30.82 4.26
2546 3388 2.307098 ACATTTAGGCAAGAGGTCTGCT 59.693 45.455 0.00 0.00 30.82 4.24
2547 3389 3.245052 ACATTTAGGCAAGAGGTCTGCTT 60.245 43.478 0.00 0.00 30.82 3.91
2548 3390 2.770164 TTAGGCAAGAGGTCTGCTTC 57.230 50.000 0.00 0.00 30.82 3.86
2549 3391 0.532573 TAGGCAAGAGGTCTGCTTCG 59.467 55.000 0.00 0.00 30.82 3.79
2550 3392 1.743252 GGCAAGAGGTCTGCTTCGG 60.743 63.158 0.00 0.00 0.00 4.30
2551 3393 1.004440 GCAAGAGGTCTGCTTCGGT 60.004 57.895 0.00 0.00 0.00 4.69
2552 3394 0.246635 GCAAGAGGTCTGCTTCGGTA 59.753 55.000 0.00 0.00 0.00 4.02
2553 3395 1.997669 CAAGAGGTCTGCTTCGGTAC 58.002 55.000 0.00 0.00 0.00 3.34
2554 3396 1.272490 CAAGAGGTCTGCTTCGGTACA 59.728 52.381 0.00 0.00 0.00 2.90
2555 3397 0.889306 AGAGGTCTGCTTCGGTACAC 59.111 55.000 0.00 0.00 0.00 2.90
2556 3398 0.601558 GAGGTCTGCTTCGGTACACA 59.398 55.000 0.00 0.00 0.00 3.72
2557 3399 0.317479 AGGTCTGCTTCGGTACACAC 59.683 55.000 0.00 0.00 0.00 3.82
2558 3400 0.669625 GGTCTGCTTCGGTACACACC 60.670 60.000 0.00 0.00 41.93 4.16
2559 3401 0.669625 GTCTGCTTCGGTACACACCC 60.670 60.000 0.00 0.00 42.43 4.61
2560 3402 1.375523 CTGCTTCGGTACACACCCC 60.376 63.158 0.00 0.00 42.43 4.95
2561 3403 2.107041 CTGCTTCGGTACACACCCCA 62.107 60.000 0.00 0.00 42.43 4.96
2562 3404 1.670083 GCTTCGGTACACACCCCAC 60.670 63.158 0.00 0.00 42.43 4.61
2563 3405 1.004200 CTTCGGTACACACCCCACC 60.004 63.158 0.00 0.00 42.43 4.61
2564 3406 2.459202 CTTCGGTACACACCCCACCC 62.459 65.000 0.00 0.00 42.43 4.61
2565 3407 4.024545 CGGTACACACCCCACCCC 62.025 72.222 0.00 0.00 42.43 4.95
2566 3408 3.654143 GGTACACACCCCACCCCC 61.654 72.222 0.00 0.00 39.11 5.40
2582 3424 4.179599 CCCCTCCCTCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
2583 3425 4.179599 CCCTCCCTCTCCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
2584 3426 4.179599 CCTCCCTCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
2585 3427 4.179599 CTCCCTCTCCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
2586 3428 4.761304 TCCCTCTCCCCCTCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
2587 3429 4.179599 CCCTCTCCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
2588 3430 4.179599 CCTCTCCCCCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
2589 3431 4.179599 CTCTCCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
2597 3439 4.806339 CTCCCCTCCCCCTCGCTT 62.806 72.222 0.00 0.00 0.00 4.68
2598 3440 3.361447 TCCCCTCCCCCTCGCTTA 61.361 66.667 0.00 0.00 0.00 3.09
2599 3441 2.366435 CCCCTCCCCCTCGCTTAA 60.366 66.667 0.00 0.00 0.00 1.85
2600 3442 1.770518 CCCCTCCCCCTCGCTTAAT 60.771 63.158 0.00 0.00 0.00 1.40
2601 3443 1.451936 CCCTCCCCCTCGCTTAATG 59.548 63.158 0.00 0.00 0.00 1.90
2602 3444 1.345715 CCCTCCCCCTCGCTTAATGT 61.346 60.000 0.00 0.00 0.00 2.71
2603 3445 1.420430 CCTCCCCCTCGCTTAATGTA 58.580 55.000 0.00 0.00 0.00 2.29
2604 3446 1.978580 CCTCCCCCTCGCTTAATGTAT 59.021 52.381 0.00 0.00 0.00 2.29
2605 3447 3.170717 CCTCCCCCTCGCTTAATGTATA 58.829 50.000 0.00 0.00 0.00 1.47
2606 3448 3.581332 CCTCCCCCTCGCTTAATGTATAA 59.419 47.826 0.00 0.00 0.00 0.98
2607 3449 4.322801 CCTCCCCCTCGCTTAATGTATAAG 60.323 50.000 0.00 0.00 0.00 1.73
2608 3450 3.581332 TCCCCCTCGCTTAATGTATAAGG 59.419 47.826 0.00 0.00 0.00 2.69
2609 3451 3.307480 CCCCCTCGCTTAATGTATAAGGG 60.307 52.174 6.07 6.07 41.41 3.95
2610 3452 3.335579 CCCTCGCTTAATGTATAAGGGC 58.664 50.000 7.24 0.00 35.89 5.19
2611 3453 3.244422 CCCTCGCTTAATGTATAAGGGCA 60.244 47.826 7.24 0.00 35.89 5.36
2612 3454 4.565652 CCCTCGCTTAATGTATAAGGGCAT 60.566 45.833 7.24 0.00 35.89 4.40
2613 3455 4.631813 CCTCGCTTAATGTATAAGGGCATC 59.368 45.833 7.24 0.00 37.39 3.91
2614 3456 5.482908 CTCGCTTAATGTATAAGGGCATCT 58.517 41.667 7.24 0.00 37.39 2.90
2615 3457 5.865085 TCGCTTAATGTATAAGGGCATCTT 58.135 37.500 7.24 0.00 37.39 2.40
2616 3458 5.700832 TCGCTTAATGTATAAGGGCATCTTG 59.299 40.000 7.24 0.00 37.39 3.02
2617 3459 5.106555 CGCTTAATGTATAAGGGCATCTTGG 60.107 44.000 2.32 0.00 36.93 3.61
2618 3460 5.183904 GCTTAATGTATAAGGGCATCTTGGG 59.816 44.000 2.32 0.00 36.93 4.12
2619 3461 2.656947 TGTATAAGGGCATCTTGGGC 57.343 50.000 2.32 0.00 36.93 5.36
2620 3462 1.849692 TGTATAAGGGCATCTTGGGCA 59.150 47.619 2.32 0.00 36.93 5.36
2621 3463 2.446666 TGTATAAGGGCATCTTGGGCAT 59.553 45.455 2.32 0.00 36.93 4.40
2622 3464 3.655291 TGTATAAGGGCATCTTGGGCATA 59.345 43.478 2.32 0.00 36.93 3.14
2623 3465 2.656947 TAAGGGCATCTTGGGCATAC 57.343 50.000 2.32 0.00 36.93 2.39
2624 3466 0.466189 AAGGGCATCTTGGGCATACG 60.466 55.000 0.00 0.00 33.76 3.06
2625 3467 1.148273 GGGCATCTTGGGCATACGA 59.852 57.895 0.00 0.00 34.52 3.43
2626 3468 1.166531 GGGCATCTTGGGCATACGAC 61.167 60.000 0.00 0.00 34.52 4.34
2627 3469 1.498865 GGCATCTTGGGCATACGACG 61.499 60.000 0.00 0.00 0.00 5.12
2628 3470 0.810031 GCATCTTGGGCATACGACGT 60.810 55.000 5.52 5.52 0.00 4.34
2629 3471 1.537348 GCATCTTGGGCATACGACGTA 60.537 52.381 10.62 10.62 0.00 3.57
2630 3472 2.866460 GCATCTTGGGCATACGACGTAT 60.866 50.000 14.68 14.68 0.00 3.06
2631 3473 2.787601 TCTTGGGCATACGACGTATC 57.212 50.000 17.41 11.97 0.00 2.24
2632 3474 1.338973 TCTTGGGCATACGACGTATCC 59.661 52.381 17.41 18.82 0.00 2.59
2633 3475 1.340248 CTTGGGCATACGACGTATCCT 59.660 52.381 17.41 0.00 0.00 3.24
2634 3476 0.956633 TGGGCATACGACGTATCCTC 59.043 55.000 17.41 9.75 0.00 3.71
2635 3477 1.245732 GGGCATACGACGTATCCTCT 58.754 55.000 17.41 0.00 0.00 3.69
2729 3581 2.664436 GCGAGAAAACCCACGACCG 61.664 63.158 0.00 0.00 0.00 4.79
2730 3582 1.300388 CGAGAAAACCCACGACCGT 60.300 57.895 0.00 0.00 0.00 4.83
2756 3608 4.652131 ACGCGGCCCATTCCAACA 62.652 61.111 12.47 0.00 0.00 3.33
2885 3737 4.157120 CCTTTCCCCGCCGATCGT 62.157 66.667 15.09 0.00 36.19 3.73
2919 3771 1.749635 CGTCTTCACCCGGGATCTAGA 60.750 57.143 32.02 20.10 0.00 2.43
2948 3800 3.936203 TTGTTGGAGTCGCCCGCT 61.936 61.111 0.00 0.00 34.97 5.52
2952 3804 2.355986 TTGGAGTCGCCCGCTGTAT 61.356 57.895 0.00 0.00 34.97 2.29
2969 3821 1.335810 GTATGTGATGTCGCCTCCGTA 59.664 52.381 0.00 0.00 35.54 4.02
2986 3838 0.524862 GTACAGGTCGTCACGGTGAT 59.475 55.000 14.78 0.00 0.00 3.06
3046 3898 1.358152 TCAACCTCTCCGGGAACATT 58.642 50.000 0.00 0.00 36.97 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.707764 TGAGAATCAGGACGTCTAGATATGG 59.292 44.000 16.46 0.00 42.56 2.74
39 40 6.697641 TCACACCCTCCTACTAAAAGAATT 57.302 37.500 0.00 0.00 0.00 2.17
79 80 5.008514 CACATATGATCGGGTATTGCAACAA 59.991 40.000 10.38 0.00 0.00 2.83
80 81 4.514816 CACATATGATCGGGTATTGCAACA 59.485 41.667 10.38 0.00 0.00 3.33
84 85 3.338249 AGCACATATGATCGGGTATTGC 58.662 45.455 10.38 5.40 0.00 3.56
85 86 5.724328 ACTAGCACATATGATCGGGTATTG 58.276 41.667 10.38 0.00 0.00 1.90
88 89 7.571025 TCTATACTAGCACATATGATCGGGTA 58.429 38.462 10.38 7.28 0.00 3.69
89 90 6.424032 TCTATACTAGCACATATGATCGGGT 58.576 40.000 10.38 5.34 0.00 5.28
123 141 7.468906 GCGGGAGAAGATCACACCTATATATAC 60.469 44.444 0.00 0.00 0.00 1.47
141 160 1.860641 TAATCCACTGAGCGGGAGAA 58.139 50.000 0.00 0.00 36.45 2.87
173 384 2.045438 TGGCGGCACCACCTATTG 60.045 61.111 7.97 0.00 46.36 1.90
185 396 1.616091 AAATTCCTGGGCAATGGCGG 61.616 55.000 0.00 0.00 42.47 6.13
186 397 1.110442 TAAATTCCTGGGCAATGGCG 58.890 50.000 0.00 0.00 42.47 5.69
193 874 5.652994 TGTGTAAATGTAAATTCCTGGGC 57.347 39.130 0.00 0.00 0.00 5.36
231 921 6.749118 CAGTTTAAGTACTACGACCACCATAC 59.251 42.308 0.00 0.00 0.00 2.39
238 928 7.141363 TGTCTTTCAGTTTAAGTACTACGACC 58.859 38.462 0.00 0.00 0.00 4.79
239 929 8.566008 TTGTCTTTCAGTTTAAGTACTACGAC 57.434 34.615 0.00 0.00 0.00 4.34
249 939 2.882137 CCGCCCTTGTCTTTCAGTTTAA 59.118 45.455 0.00 0.00 0.00 1.52
294 988 2.125673 ACCATCACTACGCACCGC 60.126 61.111 0.00 0.00 0.00 5.68
303 997 1.295423 GCACCGTACCACCATCACT 59.705 57.895 0.00 0.00 0.00 3.41
307 1001 1.077787 CATGGCACCGTACCACCAT 60.078 57.895 0.00 0.00 43.70 3.55
337 1031 4.873129 ACGGCCGAGCATAGCACG 62.873 66.667 35.90 0.00 41.79 5.34
417 1111 2.139323 ACGGTAGCAGAGGATGTACA 57.861 50.000 0.00 0.00 0.00 2.90
418 1112 2.032204 CGTACGGTAGCAGAGGATGTAC 60.032 54.545 7.57 0.00 0.00 2.90
420 1114 1.022735 CGTACGGTAGCAGAGGATGT 58.977 55.000 7.57 0.00 0.00 3.06
421 1115 1.022735 ACGTACGGTAGCAGAGGATG 58.977 55.000 21.06 0.00 0.00 3.51
422 1116 1.022735 CACGTACGGTAGCAGAGGAT 58.977 55.000 21.06 0.00 0.00 3.24
423 1117 1.028330 CCACGTACGGTAGCAGAGGA 61.028 60.000 21.06 0.00 0.00 3.71
424 1118 1.028330 TCCACGTACGGTAGCAGAGG 61.028 60.000 21.06 7.89 0.00 3.69
454 1148 5.169295 ACTATAAACAAGTCAAGGCTCGAC 58.831 41.667 0.00 0.00 0.00 4.20
482 1176 4.873129 CACGTCCGCCGATGGAGG 62.873 72.222 12.24 12.24 46.75 4.30
483 1177 4.873129 CCACGTCCGCCGATGGAG 62.873 72.222 0.00 0.00 39.14 3.86
519 1213 2.427360 CGTACGTATATGGTGCGCC 58.573 57.895 10.11 10.11 39.75 6.53
543 1237 2.611518 CAGAGATGGACGTGAAGAACC 58.388 52.381 0.00 0.00 0.00 3.62
551 1245 0.689080 ATGGAGGCAGAGATGGACGT 60.689 55.000 0.00 0.00 0.00 4.34
552 1246 0.033228 GATGGAGGCAGAGATGGACG 59.967 60.000 0.00 0.00 0.00 4.79
562 1256 1.075601 AACCCAAGAAGATGGAGGCA 58.924 50.000 0.00 0.00 43.54 4.75
573 1267 1.773635 CCACCCATCCAACCCAAGA 59.226 57.895 0.00 0.00 0.00 3.02
622 1322 2.175566 GCTCTCGCAAAGACGTACTAC 58.824 52.381 0.00 0.00 35.78 2.73
623 1323 1.131883 GGCTCTCGCAAAGACGTACTA 59.868 52.381 0.00 0.00 38.10 1.82
624 1324 0.109226 GGCTCTCGCAAAGACGTACT 60.109 55.000 0.00 0.00 38.10 2.73
637 1337 1.063174 GCATTGTGTGAATCGGCTCTC 59.937 52.381 0.00 0.00 0.00 3.20
638 1338 1.089920 GCATTGTGTGAATCGGCTCT 58.910 50.000 0.00 0.00 0.00 4.09
639 1339 0.247814 CGCATTGTGTGAATCGGCTC 60.248 55.000 0.00 0.00 0.00 4.70
640 1340 0.673333 TCGCATTGTGTGAATCGGCT 60.673 50.000 0.00 0.00 33.43 5.52
659 1359 1.732259 GACAACGATTCAGTGCCGAAT 59.268 47.619 0.00 0.00 38.32 3.34
697 1397 7.334844 ACCTCTTCTTTACTTTCAAGGTTTG 57.665 36.000 0.00 0.00 32.01 2.93
726 1426 9.092338 AGATCCTATCTATCCGTACGTCTATAT 57.908 37.037 15.21 4.85 38.00 0.86
727 1427 8.476064 AGATCCTATCTATCCGTACGTCTATA 57.524 38.462 15.21 8.08 38.00 1.31
728 1428 7.288389 AGAGATCCTATCTATCCGTACGTCTAT 59.712 40.741 15.21 7.32 40.38 1.98
729 1429 6.606796 AGAGATCCTATCTATCCGTACGTCTA 59.393 42.308 15.21 4.29 40.38 2.59
730 1430 5.422970 AGAGATCCTATCTATCCGTACGTCT 59.577 44.000 15.21 5.43 40.38 4.18
731 1431 5.663456 AGAGATCCTATCTATCCGTACGTC 58.337 45.833 15.21 0.15 40.38 4.34
732 1432 5.680594 AGAGATCCTATCTATCCGTACGT 57.319 43.478 15.21 0.00 40.38 3.57
733 1433 5.875910 ACAAGAGATCCTATCTATCCGTACG 59.124 44.000 8.69 8.69 40.38 3.67
734 1434 7.413219 CGAACAAGAGATCCTATCTATCCGTAC 60.413 44.444 0.00 0.00 40.38 3.67
735 1435 6.594547 CGAACAAGAGATCCTATCTATCCGTA 59.405 42.308 0.00 0.00 40.38 4.02
736 1436 5.413213 CGAACAAGAGATCCTATCTATCCGT 59.587 44.000 0.00 0.00 40.38 4.69
737 1437 5.413213 ACGAACAAGAGATCCTATCTATCCG 59.587 44.000 0.00 0.00 40.38 4.18
798 1498 2.049372 TGGATGGACGGACATGATGAT 58.951 47.619 0.00 0.00 0.00 2.45
823 1523 1.681264 CATGCATGACACATGGATGCT 59.319 47.619 22.59 3.47 42.50 3.79
868 1568 1.226717 CGGACGCTAGCTTCTGGTC 60.227 63.158 19.74 14.88 0.00 4.02
897 1597 2.366266 ACGTGTAGGTGACCTTGCTTTA 59.634 45.455 10.53 0.00 34.61 1.85
1029 1741 0.249489 CCACCGCAGCTATCACTACC 60.249 60.000 0.00 0.00 0.00 3.18
1031 1743 1.326951 TGCCACCGCAGCTATCACTA 61.327 55.000 0.00 0.00 41.12 2.74
1137 1876 0.179108 GCTGCCGGTAGAAGTCGAAT 60.179 55.000 25.04 0.00 0.00 3.34
1209 1948 2.586357 GCGAGGCCGATGTCCTTC 60.586 66.667 0.00 0.00 38.22 3.46
1245 1984 1.148310 CGAAGCAATCGTGGAAGTGT 58.852 50.000 3.98 0.00 46.52 3.55
1279 2023 1.949525 TCAACTGAGCTGGCAAGAAAC 59.050 47.619 0.00 0.00 0.00 2.78
1314 2058 2.408835 GGCGCGTTCATGAATGGG 59.591 61.111 30.46 30.46 41.47 4.00
1360 2131 1.313812 CCGACCCGTCTAGAAGCACT 61.314 60.000 0.00 0.00 0.00 4.40
1495 2266 1.617018 CCAGGATGTCGGAGCAGGAA 61.617 60.000 0.00 0.00 0.00 3.36
1609 2380 1.166989 GAAGACCGGAGAGAACGTCT 58.833 55.000 9.46 0.00 38.71 4.18
1615 2386 2.363361 GGGGGAAGACCGGAGAGA 59.637 66.667 9.46 0.00 41.60 3.10
1759 2536 3.706373 TCAGGGCGTGGGAAGAGC 61.706 66.667 7.42 0.00 0.00 4.09
1774 2551 3.338250 GGGCTCATGGTGGGGTCA 61.338 66.667 0.00 0.00 0.00 4.02
1865 2642 1.969200 TTGTCGAACACGTTGGGGGA 61.969 55.000 0.00 0.00 0.00 4.81
1910 2687 3.003173 CACGAAGAGCCCCTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
2217 3035 0.957362 GGCTGCCCTGCTCATATTTC 59.043 55.000 7.66 0.00 0.00 2.17
2259 3101 2.882761 GTTTGGGTCAAGACAAGGTACC 59.117 50.000 2.73 2.73 0.00 3.34
2295 3137 1.472878 TCACCGTAAGTCTGCTAGCTG 59.527 52.381 17.23 16.05 0.00 4.24
2359 3201 2.032290 GTGTAATCCGCGATAAAAGGGC 60.032 50.000 8.23 0.00 0.00 5.19
2367 3209 1.227556 GCTGGGTGTAATCCGCGAT 60.228 57.895 8.23 0.00 0.00 4.58
2368 3210 2.185867 GCTGGGTGTAATCCGCGA 59.814 61.111 8.23 0.00 0.00 5.87
2369 3211 2.895372 GGCTGGGTGTAATCCGCG 60.895 66.667 0.00 0.00 0.00 6.46
2370 3212 1.523938 GAGGCTGGGTGTAATCCGC 60.524 63.158 0.00 0.00 0.00 5.54
2371 3213 0.251916 TTGAGGCTGGGTGTAATCCG 59.748 55.000 0.00 0.00 0.00 4.18
2372 3214 1.004277 TGTTGAGGCTGGGTGTAATCC 59.996 52.381 0.00 0.00 0.00 3.01
2373 3215 2.488153 GTTGTTGAGGCTGGGTGTAATC 59.512 50.000 0.00 0.00 0.00 1.75
2374 3216 2.514803 GTTGTTGAGGCTGGGTGTAAT 58.485 47.619 0.00 0.00 0.00 1.89
2375 3217 1.812324 CGTTGTTGAGGCTGGGTGTAA 60.812 52.381 0.00 0.00 0.00 2.41
2376 3218 0.250124 CGTTGTTGAGGCTGGGTGTA 60.250 55.000 0.00 0.00 0.00 2.90
2377 3219 1.525995 CGTTGTTGAGGCTGGGTGT 60.526 57.895 0.00 0.00 0.00 4.16
2378 3220 2.908073 GCGTTGTTGAGGCTGGGTG 61.908 63.158 0.00 0.00 36.26 4.61
2379 3221 2.594592 GCGTTGTTGAGGCTGGGT 60.595 61.111 0.00 0.00 36.26 4.51
2380 3222 1.526575 ATTGCGTTGTTGAGGCTGGG 61.527 55.000 0.00 0.00 39.81 4.45
2381 3223 0.109597 GATTGCGTTGTTGAGGCTGG 60.110 55.000 0.00 0.00 39.81 4.85
2382 3224 0.877071 AGATTGCGTTGTTGAGGCTG 59.123 50.000 0.00 0.00 39.81 4.85
2383 3225 0.877071 CAGATTGCGTTGTTGAGGCT 59.123 50.000 0.00 0.00 39.81 4.58
2384 3226 0.874390 TCAGATTGCGTTGTTGAGGC 59.126 50.000 0.00 0.00 39.55 4.70
2385 3227 1.872952 TGTCAGATTGCGTTGTTGAGG 59.127 47.619 0.00 0.00 0.00 3.86
2386 3228 3.607422 TTGTCAGATTGCGTTGTTGAG 57.393 42.857 0.00 0.00 0.00 3.02
2387 3229 3.625313 TCTTTGTCAGATTGCGTTGTTGA 59.375 39.130 0.00 0.00 0.00 3.18
2388 3230 3.725740 GTCTTTGTCAGATTGCGTTGTTG 59.274 43.478 0.00 0.00 32.60 3.33
2389 3231 3.376859 TGTCTTTGTCAGATTGCGTTGTT 59.623 39.130 0.00 0.00 32.60 2.83
2390 3232 2.942376 TGTCTTTGTCAGATTGCGTTGT 59.058 40.909 0.00 0.00 32.60 3.32
2391 3233 3.607422 TGTCTTTGTCAGATTGCGTTG 57.393 42.857 0.00 0.00 32.60 4.10
2392 3234 4.836125 AATGTCTTTGTCAGATTGCGTT 57.164 36.364 0.00 0.00 32.60 4.84
2393 3235 4.154195 GGTAATGTCTTTGTCAGATTGCGT 59.846 41.667 0.00 0.00 32.60 5.24
2394 3236 4.651994 GGTAATGTCTTTGTCAGATTGCG 58.348 43.478 0.00 0.00 32.60 4.85
2395 3237 4.391830 TCGGTAATGTCTTTGTCAGATTGC 59.608 41.667 0.00 0.00 32.60 3.56
2396 3238 6.481134 CATCGGTAATGTCTTTGTCAGATTG 58.519 40.000 0.00 0.00 32.60 2.67
2397 3239 5.065218 GCATCGGTAATGTCTTTGTCAGATT 59.935 40.000 0.00 0.00 37.71 2.40
2398 3240 4.572389 GCATCGGTAATGTCTTTGTCAGAT 59.428 41.667 0.00 0.00 37.71 2.90
2399 3241 3.932710 GCATCGGTAATGTCTTTGTCAGA 59.067 43.478 0.00 0.00 37.71 3.27
2400 3242 3.684305 TGCATCGGTAATGTCTTTGTCAG 59.316 43.478 0.00 0.00 37.71 3.51
2401 3243 3.435327 GTGCATCGGTAATGTCTTTGTCA 59.565 43.478 0.00 0.00 37.71 3.58
2402 3244 3.435327 TGTGCATCGGTAATGTCTTTGTC 59.565 43.478 0.00 0.00 37.71 3.18
2403 3245 3.188460 GTGTGCATCGGTAATGTCTTTGT 59.812 43.478 0.00 0.00 37.71 2.83
2404 3246 3.188254 TGTGTGCATCGGTAATGTCTTTG 59.812 43.478 0.00 0.00 37.71 2.77
2405 3247 3.407698 TGTGTGCATCGGTAATGTCTTT 58.592 40.909 0.00 0.00 37.71 2.52
2406 3248 3.002791 CTGTGTGCATCGGTAATGTCTT 58.997 45.455 0.00 0.00 37.71 3.01
2407 3249 2.621338 CTGTGTGCATCGGTAATGTCT 58.379 47.619 0.00 0.00 37.71 3.41
2408 3250 1.062587 GCTGTGTGCATCGGTAATGTC 59.937 52.381 0.00 0.00 42.31 3.06
2409 3251 1.086696 GCTGTGTGCATCGGTAATGT 58.913 50.000 0.00 0.00 42.31 2.71
2410 3252 0.378257 GGCTGTGTGCATCGGTAATG 59.622 55.000 0.00 0.00 45.15 1.90
2411 3253 0.035534 TGGCTGTGTGCATCGGTAAT 60.036 50.000 0.00 0.00 45.15 1.89
2412 3254 0.250510 TTGGCTGTGTGCATCGGTAA 60.251 50.000 0.00 0.00 45.15 2.85
2413 3255 0.953471 GTTGGCTGTGTGCATCGGTA 60.953 55.000 0.00 0.00 45.15 4.02
2414 3256 2.112928 TTGGCTGTGTGCATCGGT 59.887 55.556 0.00 0.00 45.15 4.69
2415 3257 2.562912 GTTGGCTGTGTGCATCGG 59.437 61.111 0.00 0.00 45.15 4.18
2416 3258 2.174107 CGTTGGCTGTGTGCATCG 59.826 61.111 0.00 0.00 45.15 3.84
2417 3259 1.207593 GTCGTTGGCTGTGTGCATC 59.792 57.895 0.00 0.00 45.15 3.91
2418 3260 1.509644 CTGTCGTTGGCTGTGTGCAT 61.510 55.000 0.00 0.00 45.15 3.96
2419 3261 2.124942 TGTCGTTGGCTGTGTGCA 60.125 55.556 0.00 0.00 45.15 4.57
2420 3262 0.878523 TACTGTCGTTGGCTGTGTGC 60.879 55.000 0.00 0.00 41.94 4.57
2421 3263 1.577468 TTACTGTCGTTGGCTGTGTG 58.423 50.000 0.00 0.00 0.00 3.82
2422 3264 2.319136 TTTACTGTCGTTGGCTGTGT 57.681 45.000 0.00 0.00 0.00 3.72
2423 3265 3.311322 TCTTTTTACTGTCGTTGGCTGTG 59.689 43.478 0.00 0.00 0.00 3.66
2424 3266 3.537580 TCTTTTTACTGTCGTTGGCTGT 58.462 40.909 0.00 0.00 0.00 4.40
2425 3267 4.545823 TTCTTTTTACTGTCGTTGGCTG 57.454 40.909 0.00 0.00 0.00 4.85
2426 3268 5.570234 TTTTCTTTTTACTGTCGTTGGCT 57.430 34.783 0.00 0.00 0.00 4.75
2427 3269 6.031471 TCTTTTTCTTTTTACTGTCGTTGGC 58.969 36.000 0.00 0.00 0.00 4.52
2428 3270 7.913297 TGATCTTTTTCTTTTTACTGTCGTTGG 59.087 33.333 0.00 0.00 0.00 3.77
2429 3271 8.835467 TGATCTTTTTCTTTTTACTGTCGTTG 57.165 30.769 0.00 0.00 0.00 4.10
2430 3272 9.450807 CATGATCTTTTTCTTTTTACTGTCGTT 57.549 29.630 0.00 0.00 0.00 3.85
2431 3273 7.591426 GCATGATCTTTTTCTTTTTACTGTCGT 59.409 33.333 0.00 0.00 0.00 4.34
2432 3274 7.591057 TGCATGATCTTTTTCTTTTTACTGTCG 59.409 33.333 0.00 0.00 0.00 4.35
2433 3275 8.801715 TGCATGATCTTTTTCTTTTTACTGTC 57.198 30.769 0.00 0.00 0.00 3.51
2434 3276 9.034544 GTTGCATGATCTTTTTCTTTTTACTGT 57.965 29.630 0.00 0.00 0.00 3.55
2435 3277 9.033481 TGTTGCATGATCTTTTTCTTTTTACTG 57.967 29.630 0.00 0.00 0.00 2.74
2436 3278 9.252962 CTGTTGCATGATCTTTTTCTTTTTACT 57.747 29.630 0.00 0.00 0.00 2.24
2437 3279 9.034544 ACTGTTGCATGATCTTTTTCTTTTTAC 57.965 29.630 0.00 0.00 0.00 2.01
2438 3280 9.033481 CACTGTTGCATGATCTTTTTCTTTTTA 57.967 29.630 0.00 0.00 0.00 1.52
2439 3281 7.765360 TCACTGTTGCATGATCTTTTTCTTTTT 59.235 29.630 0.00 0.00 0.00 1.94
2440 3282 7.267128 TCACTGTTGCATGATCTTTTTCTTTT 58.733 30.769 0.00 0.00 0.00 2.27
2441 3283 6.808829 TCACTGTTGCATGATCTTTTTCTTT 58.191 32.000 0.00 0.00 0.00 2.52
2442 3284 6.395426 TCACTGTTGCATGATCTTTTTCTT 57.605 33.333 0.00 0.00 0.00 2.52
2443 3285 6.585695 ATCACTGTTGCATGATCTTTTTCT 57.414 33.333 0.00 0.00 29.27 2.52
2444 3286 6.866179 GATCACTGTTGCATGATCTTTTTC 57.134 37.500 17.11 0.00 45.20 2.29
2451 3293 6.525578 AGAAATTGATCACTGTTGCATGAT 57.474 33.333 0.00 0.12 38.28 2.45
2452 3294 5.970317 AGAAATTGATCACTGTTGCATGA 57.030 34.783 0.00 0.00 0.00 3.07
2453 3295 5.924254 ACAAGAAATTGATCACTGTTGCATG 59.076 36.000 0.00 0.00 0.00 4.06
2454 3296 6.092955 ACAAGAAATTGATCACTGTTGCAT 57.907 33.333 0.00 0.00 0.00 3.96
2455 3297 5.518848 ACAAGAAATTGATCACTGTTGCA 57.481 34.783 0.00 0.00 0.00 4.08
2456 3298 5.570589 GCTACAAGAAATTGATCACTGTTGC 59.429 40.000 0.00 1.99 33.15 4.17
2457 3299 6.800408 CAGCTACAAGAAATTGATCACTGTTG 59.200 38.462 0.00 1.03 0.00 3.33
2458 3300 6.569226 GCAGCTACAAGAAATTGATCACTGTT 60.569 38.462 0.00 0.00 0.00 3.16
2459 3301 5.106396 GCAGCTACAAGAAATTGATCACTGT 60.106 40.000 0.00 0.00 0.00 3.55
2460 3302 5.106436 TGCAGCTACAAGAAATTGATCACTG 60.106 40.000 0.00 0.00 0.00 3.66
2461 3303 5.005740 TGCAGCTACAAGAAATTGATCACT 58.994 37.500 0.00 0.00 0.00 3.41
2462 3304 5.300969 TGCAGCTACAAGAAATTGATCAC 57.699 39.130 0.00 0.00 0.00 3.06
2463 3305 4.142534 GCTGCAGCTACAAGAAATTGATCA 60.143 41.667 31.33 0.00 38.21 2.92
2464 3306 4.142534 TGCTGCAGCTACAAGAAATTGATC 60.143 41.667 36.61 4.71 42.66 2.92
2465 3307 3.760151 TGCTGCAGCTACAAGAAATTGAT 59.240 39.130 36.61 0.00 42.66 2.57
2466 3308 3.148412 TGCTGCAGCTACAAGAAATTGA 58.852 40.909 36.61 11.32 42.66 2.57
2467 3309 3.564235 TGCTGCAGCTACAAGAAATTG 57.436 42.857 36.61 0.00 42.66 2.32
2468 3310 3.760151 TCATGCTGCAGCTACAAGAAATT 59.240 39.130 36.61 8.09 42.66 1.82
2469 3311 3.349927 TCATGCTGCAGCTACAAGAAAT 58.650 40.909 36.61 18.17 42.66 2.17
2470 3312 2.781923 TCATGCTGCAGCTACAAGAAA 58.218 42.857 36.61 16.61 42.66 2.52
2471 3313 2.477845 TCATGCTGCAGCTACAAGAA 57.522 45.000 36.61 17.39 42.66 2.52
2472 3314 2.079158 GTTCATGCTGCAGCTACAAGA 58.921 47.619 36.61 23.27 42.66 3.02
2473 3315 1.131883 GGTTCATGCTGCAGCTACAAG 59.868 52.381 36.61 21.57 42.66 3.16
2474 3316 1.167851 GGTTCATGCTGCAGCTACAA 58.832 50.000 36.61 23.06 42.66 2.41
2475 3317 0.036590 TGGTTCATGCTGCAGCTACA 59.963 50.000 36.61 19.72 42.66 2.74
2476 3318 1.135575 GTTGGTTCATGCTGCAGCTAC 60.136 52.381 36.61 26.39 42.66 3.58
2477 3319 1.167851 GTTGGTTCATGCTGCAGCTA 58.832 50.000 36.61 24.05 42.66 3.32
2478 3320 0.824595 TGTTGGTTCATGCTGCAGCT 60.825 50.000 36.61 20.88 42.66 4.24
2479 3321 0.245539 ATGTTGGTTCATGCTGCAGC 59.754 50.000 31.89 31.89 42.50 5.25
2480 3322 2.736144 AATGTTGGTTCATGCTGCAG 57.264 45.000 10.11 10.11 0.00 4.41
2481 3323 3.825585 TCTAAATGTTGGTTCATGCTGCA 59.174 39.130 4.13 4.13 0.00 4.41
2482 3324 4.439305 TCTAAATGTTGGTTCATGCTGC 57.561 40.909 0.00 0.00 0.00 5.25
2483 3325 6.392354 ACAATCTAAATGTTGGTTCATGCTG 58.608 36.000 0.00 0.00 0.00 4.41
2484 3326 6.594788 ACAATCTAAATGTTGGTTCATGCT 57.405 33.333 0.00 0.00 0.00 3.79
2485 3327 6.473455 GCTACAATCTAAATGTTGGTTCATGC 59.527 38.462 0.00 0.00 32.27 4.06
2486 3328 7.699391 CAGCTACAATCTAAATGTTGGTTCATG 59.301 37.037 0.00 0.00 33.25 3.07
2487 3329 7.629222 GCAGCTACAATCTAAATGTTGGTTCAT 60.629 37.037 0.00 0.00 33.25 2.57
2488 3330 6.349280 GCAGCTACAATCTAAATGTTGGTTCA 60.349 38.462 0.00 0.00 33.25 3.18
2489 3331 6.030228 GCAGCTACAATCTAAATGTTGGTTC 58.970 40.000 0.00 0.00 33.25 3.62
2490 3332 5.476599 TGCAGCTACAATCTAAATGTTGGTT 59.523 36.000 0.00 0.00 33.25 3.67
2491 3333 5.009631 TGCAGCTACAATCTAAATGTTGGT 58.990 37.500 0.00 0.00 35.27 3.67
2492 3334 5.565592 TGCAGCTACAATCTAAATGTTGG 57.434 39.130 0.00 0.00 32.27 3.77
2493 3335 5.032863 GCTGCAGCTACAATCTAAATGTTG 58.967 41.667 31.33 0.00 38.21 3.33
2494 3336 4.701651 TGCTGCAGCTACAATCTAAATGTT 59.298 37.500 36.61 0.00 42.66 2.71
2495 3337 4.264253 TGCTGCAGCTACAATCTAAATGT 58.736 39.130 36.61 0.00 42.66 2.71
2496 3338 4.888038 TGCTGCAGCTACAATCTAAATG 57.112 40.909 36.61 0.00 42.66 2.32
2497 3339 5.128205 TCATGCTGCAGCTACAATCTAAAT 58.872 37.500 36.61 16.71 42.66 1.40
2498 3340 4.516323 TCATGCTGCAGCTACAATCTAAA 58.484 39.130 36.61 15.08 42.66 1.85
2499 3341 4.141233 TCATGCTGCAGCTACAATCTAA 57.859 40.909 36.61 15.85 42.66 2.10
2500 3342 3.825143 TCATGCTGCAGCTACAATCTA 57.175 42.857 36.61 16.61 42.66 1.98
2501 3343 2.681848 GTTCATGCTGCAGCTACAATCT 59.318 45.455 36.61 11.72 42.66 2.40
2502 3344 2.223433 GGTTCATGCTGCAGCTACAATC 60.223 50.000 36.61 22.31 42.66 2.67
2503 3345 1.747355 GGTTCATGCTGCAGCTACAAT 59.253 47.619 36.61 20.76 42.66 2.71
2504 3346 1.167851 GGTTCATGCTGCAGCTACAA 58.832 50.000 36.61 23.06 42.66 2.41
2505 3347 0.036590 TGGTTCATGCTGCAGCTACA 59.963 50.000 36.61 19.72 42.66 2.74
2506 3348 1.135575 GTTGGTTCATGCTGCAGCTAC 60.136 52.381 36.61 26.39 42.66 3.58
2507 3349 1.167851 GTTGGTTCATGCTGCAGCTA 58.832 50.000 36.61 24.05 42.66 3.32
2508 3350 0.824595 TGTTGGTTCATGCTGCAGCT 60.825 50.000 36.61 20.88 42.66 4.24
2509 3351 0.245539 ATGTTGGTTCATGCTGCAGC 59.754 50.000 31.89 31.89 42.50 5.25
2510 3352 2.736144 AATGTTGGTTCATGCTGCAG 57.264 45.000 10.11 10.11 0.00 4.41
2511 3353 3.056678 CCTAAATGTTGGTTCATGCTGCA 60.057 43.478 4.13 4.13 0.00 4.41
2512 3354 3.514645 CCTAAATGTTGGTTCATGCTGC 58.485 45.455 0.00 0.00 0.00 5.25
2513 3355 3.056678 TGCCTAAATGTTGGTTCATGCTG 60.057 43.478 0.00 0.00 0.00 4.41
2514 3356 3.164268 TGCCTAAATGTTGGTTCATGCT 58.836 40.909 0.00 0.00 0.00 3.79
2515 3357 3.591196 TGCCTAAATGTTGGTTCATGC 57.409 42.857 0.00 0.00 0.00 4.06
2516 3358 5.389859 TCTTGCCTAAATGTTGGTTCATG 57.610 39.130 0.00 0.00 0.00 3.07
2517 3359 4.463891 CCTCTTGCCTAAATGTTGGTTCAT 59.536 41.667 0.00 0.00 0.00 2.57
2518 3360 3.826157 CCTCTTGCCTAAATGTTGGTTCA 59.174 43.478 0.00 0.00 0.00 3.18
2519 3361 3.826729 ACCTCTTGCCTAAATGTTGGTTC 59.173 43.478 0.00 0.00 0.00 3.62
2520 3362 3.826729 GACCTCTTGCCTAAATGTTGGTT 59.173 43.478 0.00 0.00 0.00 3.67
2521 3363 3.074538 AGACCTCTTGCCTAAATGTTGGT 59.925 43.478 0.00 0.00 0.00 3.67
2522 3364 3.441572 CAGACCTCTTGCCTAAATGTTGG 59.558 47.826 0.00 0.00 0.00 3.77
2523 3365 3.119708 GCAGACCTCTTGCCTAAATGTTG 60.120 47.826 0.00 0.00 0.00 3.33
2524 3366 3.084786 GCAGACCTCTTGCCTAAATGTT 58.915 45.455 0.00 0.00 0.00 2.71
2525 3367 2.307098 AGCAGACCTCTTGCCTAAATGT 59.693 45.455 0.00 0.00 0.00 2.71
2526 3368 2.996631 AGCAGACCTCTTGCCTAAATG 58.003 47.619 0.00 0.00 0.00 2.32
2527 3369 3.615155 GAAGCAGACCTCTTGCCTAAAT 58.385 45.455 0.00 0.00 0.00 1.40
2528 3370 2.612972 CGAAGCAGACCTCTTGCCTAAA 60.613 50.000 0.00 0.00 0.00 1.85
2529 3371 1.066858 CGAAGCAGACCTCTTGCCTAA 60.067 52.381 0.00 0.00 0.00 2.69
2530 3372 0.532573 CGAAGCAGACCTCTTGCCTA 59.467 55.000 0.00 0.00 0.00 3.93
2531 3373 1.294780 CGAAGCAGACCTCTTGCCT 59.705 57.895 0.00 0.00 0.00 4.75
2532 3374 1.743252 CCGAAGCAGACCTCTTGCC 60.743 63.158 0.00 0.00 0.00 4.52
2533 3375 0.246635 TACCGAAGCAGACCTCTTGC 59.753 55.000 0.00 0.00 0.00 4.01
2534 3376 1.272490 TGTACCGAAGCAGACCTCTTG 59.728 52.381 0.00 0.00 0.00 3.02
2535 3377 1.272769 GTGTACCGAAGCAGACCTCTT 59.727 52.381 0.00 0.00 0.00 2.85
2536 3378 0.889306 GTGTACCGAAGCAGACCTCT 59.111 55.000 0.00 0.00 0.00 3.69
2537 3379 0.601558 TGTGTACCGAAGCAGACCTC 59.398 55.000 0.00 0.00 0.00 3.85
2538 3380 0.317479 GTGTGTACCGAAGCAGACCT 59.683 55.000 0.00 0.00 0.00 3.85
2539 3381 0.669625 GGTGTGTACCGAAGCAGACC 60.670 60.000 0.00 0.00 40.88 3.85
2540 3382 2.823628 GGTGTGTACCGAAGCAGAC 58.176 57.895 0.00 0.00 37.19 3.51
2549 3391 3.654143 GGGGGTGGGGTGTGTACC 61.654 72.222 0.00 0.00 46.76 3.34
2565 3407 4.179599 GAGGGGGAGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
2566 3408 4.179599 GGAGGGGGAGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
2567 3409 4.179599 GGGAGGGGGAGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
2568 3410 4.179599 GGGGAGGGGGAGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
2569 3411 4.761304 AGGGGAGGGGGAGAGGGA 62.761 72.222 0.00 0.00 0.00 4.20
2570 3412 4.179599 GAGGGGAGGGGGAGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
2571 3413 4.179599 GGAGGGGAGGGGGAGAGG 62.180 77.778 0.00 0.00 0.00 3.69
2572 3414 4.179599 GGGAGGGGAGGGGGAGAG 62.180 77.778 0.00 0.00 0.00 3.20
2580 3422 2.891307 TTAAGCGAGGGGGAGGGGAG 62.891 65.000 0.00 0.00 0.00 4.30
2581 3423 2.265890 ATTAAGCGAGGGGGAGGGGA 62.266 60.000 0.00 0.00 0.00 4.81
2582 3424 1.770518 ATTAAGCGAGGGGGAGGGG 60.771 63.158 0.00 0.00 0.00 4.79
2583 3425 1.345715 ACATTAAGCGAGGGGGAGGG 61.346 60.000 0.00 0.00 0.00 4.30
2584 3426 1.420430 TACATTAAGCGAGGGGGAGG 58.580 55.000 0.00 0.00 0.00 4.30
2585 3427 4.322801 CCTTATACATTAAGCGAGGGGGAG 60.323 50.000 0.00 0.00 0.00 4.30
2586 3428 3.581332 CCTTATACATTAAGCGAGGGGGA 59.419 47.826 0.00 0.00 0.00 4.81
2587 3429 3.307480 CCCTTATACATTAAGCGAGGGGG 60.307 52.174 0.00 0.00 38.92 5.40
2588 3430 3.868754 GCCCTTATACATTAAGCGAGGGG 60.869 52.174 7.57 0.00 42.09 4.79
2589 3431 3.244422 TGCCCTTATACATTAAGCGAGGG 60.244 47.826 0.00 0.00 44.14 4.30
2590 3432 4.002906 TGCCCTTATACATTAAGCGAGG 57.997 45.455 0.00 0.00 0.00 4.63
2591 3433 5.482908 AGATGCCCTTATACATTAAGCGAG 58.517 41.667 0.00 0.00 0.00 5.03
2592 3434 5.483685 AGATGCCCTTATACATTAAGCGA 57.516 39.130 0.00 0.00 0.00 4.93
2593 3435 5.106555 CCAAGATGCCCTTATACATTAAGCG 60.107 44.000 0.00 0.00 32.86 4.68
2594 3436 5.183904 CCCAAGATGCCCTTATACATTAAGC 59.816 44.000 0.00 0.00 32.86 3.09
2595 3437 5.183904 GCCCAAGATGCCCTTATACATTAAG 59.816 44.000 0.00 0.00 32.86 1.85
2596 3438 5.076873 GCCCAAGATGCCCTTATACATTAA 58.923 41.667 0.00 0.00 32.86 1.40
2597 3439 4.105537 TGCCCAAGATGCCCTTATACATTA 59.894 41.667 0.00 0.00 32.86 1.90
2598 3440 3.117169 TGCCCAAGATGCCCTTATACATT 60.117 43.478 0.00 0.00 32.86 2.71
2599 3441 2.446666 TGCCCAAGATGCCCTTATACAT 59.553 45.455 0.00 0.00 32.86 2.29
2600 3442 1.849692 TGCCCAAGATGCCCTTATACA 59.150 47.619 0.00 0.00 32.86 2.29
2601 3443 2.656947 TGCCCAAGATGCCCTTATAC 57.343 50.000 0.00 0.00 32.86 1.47
2602 3444 3.307410 CGTATGCCCAAGATGCCCTTATA 60.307 47.826 0.00 0.00 32.86 0.98
2603 3445 2.553028 CGTATGCCCAAGATGCCCTTAT 60.553 50.000 0.00 0.00 32.86 1.73
2604 3446 1.202758 CGTATGCCCAAGATGCCCTTA 60.203 52.381 0.00 0.00 32.86 2.69
2605 3447 0.466189 CGTATGCCCAAGATGCCCTT 60.466 55.000 0.00 0.00 34.91 3.95
2606 3448 1.149174 CGTATGCCCAAGATGCCCT 59.851 57.895 0.00 0.00 0.00 5.19
2607 3449 1.148273 TCGTATGCCCAAGATGCCC 59.852 57.895 0.00 0.00 0.00 5.36
2608 3450 1.498865 CGTCGTATGCCCAAGATGCC 61.499 60.000 0.00 0.00 0.00 4.40
2609 3451 0.810031 ACGTCGTATGCCCAAGATGC 60.810 55.000 0.00 0.00 0.00 3.91
2610 3452 2.502213 TACGTCGTATGCCCAAGATG 57.498 50.000 0.00 0.00 0.00 2.90
2611 3453 2.029290 GGATACGTCGTATGCCCAAGAT 60.029 50.000 22.11 0.00 32.04 2.40
2612 3454 1.338973 GGATACGTCGTATGCCCAAGA 59.661 52.381 22.11 0.00 32.04 3.02
2613 3455 1.340248 AGGATACGTCGTATGCCCAAG 59.660 52.381 27.06 0.00 46.39 3.61
2614 3456 1.338973 GAGGATACGTCGTATGCCCAA 59.661 52.381 27.06 0.00 46.39 4.12
2615 3457 0.956633 GAGGATACGTCGTATGCCCA 59.043 55.000 27.06 0.00 46.39 5.36
2616 3458 1.068472 CAGAGGATACGTCGTATGCCC 60.068 57.143 27.06 19.07 46.39 5.36
2617 3459 1.666311 GCAGAGGATACGTCGTATGCC 60.666 57.143 27.06 22.34 46.26 4.40
2618 3460 1.687628 GCAGAGGATACGTCGTATGC 58.312 55.000 24.48 24.48 46.06 3.14
2619 3461 1.263484 ACGCAGAGGATACGTCGTATG 59.737 52.381 22.11 10.24 46.39 2.39
2620 3462 1.263484 CACGCAGAGGATACGTCGTAT 59.737 52.381 17.57 17.57 46.39 3.06
2621 3463 0.654160 CACGCAGAGGATACGTCGTA 59.346 55.000 7.69 7.69 46.39 3.43
2622 3464 1.428219 CACGCAGAGGATACGTCGT 59.572 57.895 2.21 2.21 46.39 4.34
2623 3465 1.939785 GCACGCAGAGGATACGTCG 60.940 63.158 0.00 0.00 46.39 5.12
2624 3466 1.589196 GGCACGCAGAGGATACGTC 60.589 63.158 0.00 0.00 46.39 4.34
2625 3467 2.494918 GGCACGCAGAGGATACGT 59.505 61.111 0.00 0.00 46.39 3.57
2626 3468 2.279517 GGGCACGCAGAGGATACG 60.280 66.667 0.00 0.00 46.39 3.06
2627 3469 0.679505 TATGGGCACGCAGAGGATAC 59.320 55.000 0.00 0.00 0.00 2.24
2628 3470 0.679505 GTATGGGCACGCAGAGGATA 59.320 55.000 0.00 0.00 0.00 2.59
2629 3471 1.337384 TGTATGGGCACGCAGAGGAT 61.337 55.000 0.00 0.00 0.00 3.24
2630 3472 1.960040 CTGTATGGGCACGCAGAGGA 61.960 60.000 0.00 0.00 0.00 3.71
2631 3473 1.522355 CTGTATGGGCACGCAGAGG 60.522 63.158 0.00 0.00 0.00 3.69
2632 3474 1.522355 CCTGTATGGGCACGCAGAG 60.522 63.158 6.57 0.00 0.00 3.35
2633 3475 0.973496 TACCTGTATGGGCACGCAGA 60.973 55.000 6.57 0.00 41.11 4.26
2634 3476 0.530650 CTACCTGTATGGGCACGCAG 60.531 60.000 0.00 0.00 41.11 5.18
2635 3477 0.973496 TCTACCTGTATGGGCACGCA 60.973 55.000 0.00 0.00 41.11 5.24
2715 3558 3.237290 CGACGGTCGTGGGTTTTC 58.763 61.111 21.68 0.00 34.72 2.29
2885 3737 2.235155 TGAAGACGGGGAAAATGATCGA 59.765 45.455 0.00 0.00 0.00 3.59
2889 3741 1.271707 GGGTGAAGACGGGGAAAATGA 60.272 52.381 0.00 0.00 0.00 2.57
2948 3800 0.102300 CGGAGGCGACATCACATACA 59.898 55.000 0.00 0.00 0.00 2.29
2952 3804 1.245376 TGTACGGAGGCGACATCACA 61.245 55.000 0.00 0.00 0.00 3.58
2969 3821 1.289066 CATCACCGTGACGACCTGT 59.711 57.895 6.54 0.00 0.00 4.00
2986 3838 4.367023 GCGTCCACGTAGGCCACA 62.367 66.667 5.01 0.00 42.22 4.17
3023 3875 1.486726 GTTCCCGGAGAGGTTGATCAT 59.513 52.381 0.73 0.00 38.74 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.