Multiple sequence alignment - TraesCS3A01G509300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G509300 chr3A 100.000 3323 0 0 1 3323 730067164 730070486 0.000000e+00 6137.0
1 TraesCS3A01G509300 chr3B 88.863 862 58 24 1809 2647 697577920 697578766 0.000000e+00 1026.0
2 TraesCS3A01G509300 chr3B 91.254 686 42 11 1968 2647 808014092 808014765 0.000000e+00 918.0
3 TraesCS3A01G509300 chr3B 87.865 684 44 19 912 1575 808013133 808013797 0.000000e+00 767.0
4 TraesCS3A01G509300 chr3B 88.962 607 26 16 2755 3323 808014775 808015378 0.000000e+00 712.0
5 TraesCS3A01G509300 chr3B 84.493 690 61 27 889 1558 697577147 697577810 1.010000e-179 640.0
6 TraesCS3A01G509300 chr3B 82.008 767 90 21 1 724 697573400 697574161 2.830000e-170 608.0
7 TraesCS3A01G509300 chr3B 82.192 730 84 22 1 695 808012133 808012851 1.330000e-163 586.0
8 TraesCS3A01G509300 chr3B 95.628 183 8 0 3141 3323 697579014 697579196 9.020000e-76 294.0
9 TraesCS3A01G509300 chr3B 91.176 170 13 1 2839 3006 697578801 697578970 2.580000e-56 230.0
10 TraesCS3A01G509300 chr3D 85.101 792 76 26 1968 2747 600641058 600641819 0.000000e+00 771.0
11 TraesCS3A01G509300 chr3D 84.783 690 55 35 916 1575 600640086 600640755 0.000000e+00 647.0
12 TraesCS3A01G509300 chr3D 82.336 685 71 21 7 660 600636628 600637293 1.740000e-152 549.0
13 TraesCS3A01G509300 chr3D 86.765 204 19 7 667 866 600639868 600640067 1.550000e-53 220.0
14 TraesCS3A01G509300 chr3D 81.667 180 25 7 826 1002 600635368 600635542 3.460000e-30 143.0
15 TraesCS3A01G509300 chr3D 81.633 98 3 2 2842 2932 600652165 600652254 2.140000e-07 67.6
16 TraesCS3A01G509300 chr2D 95.876 194 8 0 1176 1369 186646727 186646920 6.920000e-82 315.0
17 TraesCS3A01G509300 chr2B 95.876 194 8 0 1176 1369 239846443 239846636 6.920000e-82 315.0
18 TraesCS3A01G509300 chr2A 95.431 197 8 1 1176 1372 199086918 199087113 2.490000e-81 313.0
19 TraesCS3A01G509300 chr6D 80.308 325 42 17 1248 1566 202662355 202662663 3.340000e-55 226.0
20 TraesCS3A01G509300 chr6D 94.444 72 2 2 1302 1371 297179790 297179719 3.500000e-20 110.0
21 TraesCS3A01G509300 chr5D 92.424 66 3 2 1302 1365 140961549 140961484 3.530000e-15 93.5
22 TraesCS3A01G509300 chr4A 78.261 138 19 8 545 673 29304441 29304576 9.880000e-11 78.7
23 TraesCS3A01G509300 chr4A 85.000 60 7 2 538 595 669858440 669858499 3.580000e-05 60.2
24 TraesCS3A01G509300 chr7A 95.455 44 2 0 631 674 284788088 284788131 1.650000e-08 71.3
25 TraesCS3A01G509300 chr5B 87.302 63 0 1 2870 2932 599242685 599242739 7.700000e-07 65.8
26 TraesCS3A01G509300 chr4B 87.302 63 0 1 2870 2932 239622692 239622638 7.700000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G509300 chr3A 730067164 730070486 3322 False 6137.00 6137 100.00000 1 3323 1 chr3A.!!$F1 3322
1 TraesCS3A01G509300 chr3B 808012133 808015378 3245 False 745.75 918 87.56825 1 3323 4 chr3B.!!$F2 3322
2 TraesCS3A01G509300 chr3B 697573400 697579196 5796 False 559.60 1026 88.43360 1 3323 5 chr3B.!!$F1 3322
3 TraesCS3A01G509300 chr3D 600635368 600641819 6451 False 466.00 771 84.13040 7 2747 5 chr3D.!!$F2 2740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 7890 0.179215 CATCCTTGTTGCGCGTTCTC 60.179 55.0 8.43 0.0 0.0 2.87 F
1386 8402 0.032017 GCTCCCTTCTCTCCCCTACA 60.032 60.0 0.00 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 9081 1.204146 GTAGGTCAGGGAAGCATGGA 58.796 55.0 0.00 0.0 0.0 3.41 R
3091 10238 0.662619 CTTGTGGCAAAAGACGCTCA 59.337 50.0 12.22 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 1290 5.048013 CCTTTCAAGTCAGGATTAAACCACC 60.048 44.000 4.40 0.00 30.81 4.61
61 1315 4.771590 ATACATATTCCCTTGCAATGCG 57.228 40.909 0.00 0.00 0.00 4.73
125 1379 4.646945 TCTTGTGGTTTTATTCACTGCCAA 59.353 37.500 0.00 0.00 35.15 4.52
129 1383 4.021544 GTGGTTTTATTCACTGCCAATCCA 60.022 41.667 0.00 0.00 0.00 3.41
178 1432 3.849911 TCTAGCAATGAAGAGAACACGG 58.150 45.455 0.00 0.00 0.00 4.94
193 1448 1.207329 ACACGGGAGCTCCTAATCAAC 59.793 52.381 31.36 12.50 35.95 3.18
199 1454 2.633488 GAGCTCCTAATCAACGCCTTT 58.367 47.619 0.87 0.00 0.00 3.11
211 1466 4.431035 GCCTTTAGCGCCGATGTA 57.569 55.556 2.29 0.00 0.00 2.29
221 1476 1.934849 GCGCCGATGTACTGCATATCA 60.935 52.381 0.00 0.00 38.06 2.15
224 1479 3.329386 GCCGATGTACTGCATATCACAT 58.671 45.455 0.00 0.00 38.06 3.21
233 1488 3.392285 ACTGCATATCACATAGGGAGCAA 59.608 43.478 0.00 0.00 38.33 3.91
244 1499 0.909610 AGGGAGCAAATGGGTCGAGA 60.910 55.000 0.00 0.00 45.03 4.04
264 1519 5.449588 CGAGACCCAGTAATCTTTTACGCTA 60.450 44.000 0.00 0.00 42.14 4.26
271 1526 6.292381 CCAGTAATCTTTTACGCTATGTGCTC 60.292 42.308 0.00 0.00 42.14 4.26
289 1544 1.092921 TCGCTTGTTTCACACGCCTT 61.093 50.000 0.26 0.00 39.84 4.35
291 1546 1.797348 CGCTTGTTTCACACGCCTTTT 60.797 47.619 0.26 0.00 39.84 2.27
298 1553 2.842208 TCACACGCCTTTTCTTGTTG 57.158 45.000 0.00 0.00 0.00 3.33
305 1560 4.625311 CACGCCTTTTCTTGTTGTTCTTTT 59.375 37.500 0.00 0.00 0.00 2.27
309 1580 6.237569 CGCCTTTTCTTGTTGTTCTTTTCTTC 60.238 38.462 0.00 0.00 0.00 2.87
310 1581 6.589907 GCCTTTTCTTGTTGTTCTTTTCTTCA 59.410 34.615 0.00 0.00 0.00 3.02
346 1617 6.105397 TGTCTCCGGATAAAACAACTAAGT 57.895 37.500 3.57 0.00 0.00 2.24
347 1618 6.527423 TGTCTCCGGATAAAACAACTAAGTT 58.473 36.000 3.57 0.00 0.00 2.66
379 1651 8.211116 TGTTAACTCGAAAAAGTTGGTGAATA 57.789 30.769 7.22 0.00 39.74 1.75
542 1834 9.872721 AAAATTTCATGCTTGGTTTTGAAAAAT 57.127 22.222 0.00 0.00 40.36 1.82
604 1897 6.093909 TGCACATCTACGTGATTCAATCAAAT 59.906 34.615 0.29 0.00 41.69 2.32
605 1898 6.630443 GCACATCTACGTGATTCAATCAAATC 59.370 38.462 0.29 0.00 41.69 2.17
606 1899 7.677041 GCACATCTACGTGATTCAATCAAATCA 60.677 37.037 0.29 0.00 42.01 2.57
609 1902 9.003112 CATCTACGTGATTCAATCAAATCAAAC 57.997 33.333 0.29 0.00 44.83 2.93
611 1904 8.729756 TCTACGTGATTCAATCAAATCAAACAT 58.270 29.630 0.29 0.00 44.83 2.71
614 1907 9.689976 ACGTGATTCAATCAAATCAAACATAAA 57.310 25.926 0.29 0.00 44.83 1.40
647 1946 2.927477 TCCGCACGAATCTTCATGTAAC 59.073 45.455 0.00 0.00 0.00 2.50
675 4542 4.620982 TGACATATGACTTAGATGTGCCG 58.379 43.478 10.38 0.00 41.09 5.69
678 4545 2.604046 ATGACTTAGATGTGCCGGAC 57.396 50.000 5.05 0.46 0.00 4.79
691 4558 1.337917 TGCCGGACGTGCAATACTTAA 60.338 47.619 5.05 0.00 35.40 1.85
705 4757 9.442047 GTGCAATACTTAAGGCATATCTAGATT 57.558 33.333 11.25 0.00 38.68 2.40
770 7755 7.254286 CCAAACAGAAAACCGAATAAACCAAAG 60.254 37.037 0.00 0.00 0.00 2.77
799 7784 2.621526 GGAAAAGAAACCAAGCGAAGGA 59.378 45.455 0.00 0.00 0.00 3.36
838 7824 2.949644 CCAAACCGAAAGAACCTCACTT 59.050 45.455 0.00 0.00 0.00 3.16
875 7866 0.606130 GGGCCGTCCCGTTTAAGAAA 60.606 55.000 0.00 0.00 43.94 2.52
876 7867 1.456296 GGCCGTCCCGTTTAAGAAAT 58.544 50.000 0.00 0.00 0.00 2.17
877 7868 1.131693 GGCCGTCCCGTTTAAGAAATG 59.868 52.381 0.00 0.00 0.00 2.32
878 7869 1.131693 GCCGTCCCGTTTAAGAAATGG 59.868 52.381 3.59 3.59 45.30 3.16
879 7870 2.429478 CCGTCCCGTTTAAGAAATGGT 58.571 47.619 8.90 0.00 44.44 3.55
880 7871 2.417586 CCGTCCCGTTTAAGAAATGGTC 59.582 50.000 8.90 2.45 44.44 4.02
881 7872 3.068560 CGTCCCGTTTAAGAAATGGTCA 58.931 45.455 8.90 0.00 44.44 4.02
882 7873 3.687698 CGTCCCGTTTAAGAAATGGTCAT 59.312 43.478 8.90 0.00 44.44 3.06
883 7874 4.201783 CGTCCCGTTTAAGAAATGGTCATC 60.202 45.833 8.90 0.00 44.44 2.92
884 7875 4.095932 GTCCCGTTTAAGAAATGGTCATCC 59.904 45.833 8.90 0.00 44.44 3.51
885 7876 4.018779 TCCCGTTTAAGAAATGGTCATCCT 60.019 41.667 8.90 0.00 44.44 3.24
886 7877 4.705023 CCCGTTTAAGAAATGGTCATCCTT 59.295 41.667 8.90 0.00 44.44 3.36
887 7878 5.393027 CCCGTTTAAGAAATGGTCATCCTTG 60.393 44.000 8.90 0.00 44.44 3.61
888 7879 5.183140 CCGTTTAAGAAATGGTCATCCTTGT 59.817 40.000 2.55 0.00 41.64 3.16
889 7880 6.294508 CCGTTTAAGAAATGGTCATCCTTGTT 60.295 38.462 2.55 0.00 41.64 2.83
890 7881 6.582295 CGTTTAAGAAATGGTCATCCTTGTTG 59.418 38.462 8.04 0.00 34.23 3.33
891 7882 4.525912 AAGAAATGGTCATCCTTGTTGC 57.474 40.909 0.00 0.00 34.23 4.17
892 7883 2.489329 AGAAATGGTCATCCTTGTTGCG 59.511 45.455 0.00 0.00 34.23 4.85
893 7884 0.527565 AATGGTCATCCTTGTTGCGC 59.472 50.000 0.00 0.00 34.23 6.09
894 7885 1.647545 ATGGTCATCCTTGTTGCGCG 61.648 55.000 0.00 0.00 34.23 6.86
895 7886 2.325082 GGTCATCCTTGTTGCGCGT 61.325 57.895 8.43 0.00 0.00 6.01
896 7887 1.574428 GTCATCCTTGTTGCGCGTT 59.426 52.632 8.43 0.00 0.00 4.84
897 7888 0.452784 GTCATCCTTGTTGCGCGTTC 60.453 55.000 8.43 0.00 0.00 3.95
898 7889 0.602638 TCATCCTTGTTGCGCGTTCT 60.603 50.000 8.43 0.00 0.00 3.01
899 7890 0.179215 CATCCTTGTTGCGCGTTCTC 60.179 55.000 8.43 0.00 0.00 2.87
900 7891 1.298859 ATCCTTGTTGCGCGTTCTCC 61.299 55.000 8.43 0.00 0.00 3.71
901 7892 2.250939 CCTTGTTGCGCGTTCTCCA 61.251 57.895 8.43 0.00 0.00 3.86
911 7902 0.598065 GCGTTCTCCATTGCCACTTT 59.402 50.000 0.00 0.00 0.00 2.66
914 7905 1.273327 GTTCTCCATTGCCACTTTGGG 59.727 52.381 0.00 0.00 38.19 4.12
943 7935 0.773644 GTCTGGCCCATCCATACCAT 59.226 55.000 0.00 0.00 45.50 3.55
1006 8002 0.687354 AGGCATCACCGTGTCTTCTT 59.313 50.000 0.00 0.00 46.52 2.52
1011 8007 1.996798 TCACCGTGTCTTCTTCTCCT 58.003 50.000 0.00 0.00 0.00 3.69
1015 8011 0.533032 CGTGTCTTCTTCTCCTCCCC 59.467 60.000 0.00 0.00 0.00 4.81
1022 8018 1.002792 CTTCTCCTCCCCCTGCTCT 59.997 63.158 0.00 0.00 0.00 4.09
1029 8025 3.744155 CCCCCTGCTCTTTCCCCC 61.744 72.222 0.00 0.00 0.00 5.40
1121 8132 1.067213 TCCGACGATTTGCATGTCTCA 60.067 47.619 0.00 0.00 0.00 3.27
1154 8165 2.397751 GCATGGCGATGTGCTAACT 58.602 52.632 10.59 0.00 45.43 2.24
1283 8299 0.878961 ACGCCGTCAAGTTCAAGGTC 60.879 55.000 0.00 0.00 0.00 3.85
1383 8399 2.042435 CGCTCCCTTCTCTCCCCT 60.042 66.667 0.00 0.00 0.00 4.79
1386 8402 0.032017 GCTCCCTTCTCTCCCCTACA 60.032 60.000 0.00 0.00 0.00 2.74
1388 8404 1.007238 CTCCCTTCTCTCCCCTACACA 59.993 57.143 0.00 0.00 0.00 3.72
1392 8408 0.790993 TTCTCTCCCCTACACACCCT 59.209 55.000 0.00 0.00 0.00 4.34
1394 8410 0.336737 CTCTCCCCTACACACCCTCT 59.663 60.000 0.00 0.00 0.00 3.69
1395 8411 0.790993 TCTCCCCTACACACCCTCTT 59.209 55.000 0.00 0.00 0.00 2.85
1396 8412 1.151413 TCTCCCCTACACACCCTCTTT 59.849 52.381 0.00 0.00 0.00 2.52
1397 8413 1.985895 CTCCCCTACACACCCTCTTTT 59.014 52.381 0.00 0.00 0.00 2.27
1426 8442 5.755375 TCGGATTTCTTCTATGATCAAGTGC 59.245 40.000 0.00 0.00 0.00 4.40
1430 8446 7.171337 GGATTTCTTCTATGATCAAGTGCTCTC 59.829 40.741 0.00 0.00 0.00 3.20
1431 8447 5.180367 TCTTCTATGATCAAGTGCTCTCG 57.820 43.478 0.00 0.00 0.00 4.04
1432 8448 4.884164 TCTTCTATGATCAAGTGCTCTCGA 59.116 41.667 0.00 0.00 0.00 4.04
1433 8449 5.534278 TCTTCTATGATCAAGTGCTCTCGAT 59.466 40.000 0.00 0.00 0.00 3.59
1434 8450 5.781210 TCTATGATCAAGTGCTCTCGATT 57.219 39.130 0.00 0.00 0.00 3.34
1450 8469 4.091365 TCTCGATTGTTACGCACATCAAAG 59.909 41.667 0.00 0.00 34.43 2.77
1462 8481 3.372206 GCACATCAAAGAACATACGAGCT 59.628 43.478 0.00 0.00 0.00 4.09
1481 8503 4.338879 AGCTGCAAGTAAATCTGGAATGT 58.661 39.130 1.02 0.00 35.30 2.71
1538 8569 5.581126 TTTGCAATAGACCATCATCCAAC 57.419 39.130 0.00 0.00 0.00 3.77
1558 8589 3.726607 ACTGTATCAGCTAGAAGCATGC 58.273 45.455 10.51 10.51 45.56 4.06
1575 8606 4.673375 CTGGCAGGCCTGGTTGCT 62.673 66.667 33.46 0.00 40.15 3.91
1580 8611 1.379642 GCAGGCCTGGTTGCTCATAC 61.380 60.000 33.46 9.38 37.35 2.39
1581 8612 0.035152 CAGGCCTGGTTGCTCATACA 60.035 55.000 26.14 0.00 0.00 2.29
1582 8613 0.921896 AGGCCTGGTTGCTCATACAT 59.078 50.000 3.11 0.00 0.00 2.29
1583 8614 1.027357 GGCCTGGTTGCTCATACATG 58.973 55.000 0.00 0.00 0.00 3.21
1584 8615 1.027357 GCCTGGTTGCTCATACATGG 58.973 55.000 0.00 0.00 0.00 3.66
1585 8616 1.683011 GCCTGGTTGCTCATACATGGT 60.683 52.381 0.00 0.00 0.00 3.55
1586 8617 2.019249 CCTGGTTGCTCATACATGGTG 58.981 52.381 0.00 0.00 0.00 4.17
1587 8618 1.402968 CTGGTTGCTCATACATGGTGC 59.597 52.381 0.00 0.00 0.00 5.01
1588 8619 1.004628 TGGTTGCTCATACATGGTGCT 59.995 47.619 0.00 0.00 0.00 4.40
1589 8620 2.238395 TGGTTGCTCATACATGGTGCTA 59.762 45.455 0.00 0.00 0.00 3.49
1590 8621 3.117926 TGGTTGCTCATACATGGTGCTAT 60.118 43.478 0.00 0.00 0.00 2.97
1591 8622 3.499918 GGTTGCTCATACATGGTGCTATC 59.500 47.826 0.00 0.00 0.00 2.08
1592 8623 4.129380 GTTGCTCATACATGGTGCTATCA 58.871 43.478 0.00 0.00 0.00 2.15
1593 8624 3.999046 TGCTCATACATGGTGCTATCAG 58.001 45.455 0.00 0.00 0.00 2.90
1594 8625 2.740981 GCTCATACATGGTGCTATCAGC 59.259 50.000 0.00 0.00 42.82 4.26
1609 8640 3.855689 ATCAGCATAGCAAAACACACC 57.144 42.857 0.00 0.00 0.00 4.16
1610 8641 2.862541 TCAGCATAGCAAAACACACCT 58.137 42.857 0.00 0.00 0.00 4.00
1611 8642 4.014569 TCAGCATAGCAAAACACACCTA 57.985 40.909 0.00 0.00 0.00 3.08
1612 8643 3.751175 TCAGCATAGCAAAACACACCTAC 59.249 43.478 0.00 0.00 0.00 3.18
1613 8644 2.742053 AGCATAGCAAAACACACCTACG 59.258 45.455 0.00 0.00 0.00 3.51
1614 8645 2.739913 GCATAGCAAAACACACCTACGA 59.260 45.455 0.00 0.00 0.00 3.43
1615 8646 3.181520 GCATAGCAAAACACACCTACGAG 60.182 47.826 0.00 0.00 0.00 4.18
1616 8647 1.226746 AGCAAAACACACCTACGAGC 58.773 50.000 0.00 0.00 0.00 5.03
1617 8648 0.941542 GCAAAACACACCTACGAGCA 59.058 50.000 0.00 0.00 0.00 4.26
1618 8649 1.535462 GCAAAACACACCTACGAGCAT 59.465 47.619 0.00 0.00 0.00 3.79
1619 8650 2.739913 GCAAAACACACCTACGAGCATA 59.260 45.455 0.00 0.00 0.00 3.14
1620 8651 3.181520 GCAAAACACACCTACGAGCATAG 60.182 47.826 0.00 0.00 0.00 2.23
1621 8652 3.955650 AAACACACCTACGAGCATAGT 57.044 42.857 0.00 0.00 0.00 2.12
1622 8653 2.941453 ACACACCTACGAGCATAGTG 57.059 50.000 0.00 0.00 0.00 2.74
1623 8654 2.443416 ACACACCTACGAGCATAGTGA 58.557 47.619 0.00 0.00 0.00 3.41
1624 8655 2.163815 ACACACCTACGAGCATAGTGAC 59.836 50.000 0.00 0.00 0.00 3.67
1625 8656 1.400846 ACACCTACGAGCATAGTGACG 59.599 52.381 0.00 0.00 0.00 4.35
1626 8657 0.381089 ACCTACGAGCATAGTGACGC 59.619 55.000 0.00 0.00 0.00 5.19
1627 8658 0.380733 CCTACGAGCATAGTGACGCA 59.619 55.000 0.00 0.00 0.00 5.24
1628 8659 1.202256 CCTACGAGCATAGTGACGCAA 60.202 52.381 0.00 0.00 0.00 4.85
1630 8661 0.526211 ACGAGCATAGTGACGCAAGA 59.474 50.000 0.00 0.00 43.62 3.02
1631 8662 1.067846 ACGAGCATAGTGACGCAAGAA 60.068 47.619 0.00 0.00 43.62 2.52
1632 8663 1.992667 CGAGCATAGTGACGCAAGAAA 59.007 47.619 0.00 0.00 43.62 2.52
1633 8664 2.604914 CGAGCATAGTGACGCAAGAAAT 59.395 45.455 0.00 0.00 43.62 2.17
1634 8665 3.062639 CGAGCATAGTGACGCAAGAAATT 59.937 43.478 0.00 0.00 43.62 1.82
1635 8666 4.337763 GAGCATAGTGACGCAAGAAATTG 58.662 43.478 0.00 0.00 43.62 2.32
1636 8667 3.753272 AGCATAGTGACGCAAGAAATTGT 59.247 39.130 0.00 0.00 43.62 2.71
1637 8668 4.216257 AGCATAGTGACGCAAGAAATTGTT 59.784 37.500 0.00 0.00 43.62 2.83
1638 8669 4.917415 GCATAGTGACGCAAGAAATTGTTT 59.083 37.500 0.00 0.00 43.62 2.83
1639 8670 5.402270 GCATAGTGACGCAAGAAATTGTTTT 59.598 36.000 0.00 0.00 43.62 2.43
1640 8671 6.074356 GCATAGTGACGCAAGAAATTGTTTTT 60.074 34.615 0.00 0.00 43.62 1.94
1641 8672 7.114247 GCATAGTGACGCAAGAAATTGTTTTTA 59.886 33.333 0.00 0.00 43.62 1.52
1642 8673 9.128107 CATAGTGACGCAAGAAATTGTTTTTAT 57.872 29.630 0.00 0.00 43.62 1.40
1643 8674 9.691362 ATAGTGACGCAAGAAATTGTTTTTATT 57.309 25.926 0.00 0.00 43.62 1.40
1644 8675 8.419076 AGTGACGCAAGAAATTGTTTTTATTT 57.581 26.923 0.00 0.00 43.62 1.40
1645 8676 8.878769 AGTGACGCAAGAAATTGTTTTTATTTT 58.121 25.926 0.00 0.00 43.62 1.82
1646 8677 8.932963 GTGACGCAAGAAATTGTTTTTATTTTG 58.067 29.630 0.00 0.00 43.62 2.44
1647 8678 7.637907 TGACGCAAGAAATTGTTTTTATTTTGC 59.362 29.630 0.00 0.00 43.62 3.68
1648 8679 6.909895 ACGCAAGAAATTGTTTTTATTTTGCC 59.090 30.769 0.00 0.00 43.62 4.52
1649 8680 6.909357 CGCAAGAAATTGTTTTTATTTTGCCA 59.091 30.769 0.00 0.00 43.02 4.92
1650 8681 7.097087 CGCAAGAAATTGTTTTTATTTTGCCAC 60.097 33.333 0.00 0.00 43.02 5.01
1651 8682 7.699812 GCAAGAAATTGTTTTTATTTTGCCACA 59.300 29.630 0.00 0.00 29.08 4.17
1652 8683 9.224058 CAAGAAATTGTTTTTATTTTGCCACAG 57.776 29.630 0.00 0.00 0.00 3.66
1653 8684 8.729805 AGAAATTGTTTTTATTTTGCCACAGA 57.270 26.923 0.00 0.00 0.00 3.41
1654 8685 8.611757 AGAAATTGTTTTTATTTTGCCACAGAC 58.388 29.630 0.00 0.00 0.00 3.51
1655 8686 6.859420 ATTGTTTTTATTTTGCCACAGACC 57.141 33.333 0.00 0.00 0.00 3.85
1656 8687 5.344743 TGTTTTTATTTTGCCACAGACCA 57.655 34.783 0.00 0.00 0.00 4.02
1657 8688 5.734720 TGTTTTTATTTTGCCACAGACCAA 58.265 33.333 0.00 0.00 0.00 3.67
1658 8689 6.352516 TGTTTTTATTTTGCCACAGACCAAT 58.647 32.000 0.00 0.00 0.00 3.16
1659 8690 7.500992 TGTTTTTATTTTGCCACAGACCAATA 58.499 30.769 0.00 0.00 0.00 1.90
1660 8691 7.439655 TGTTTTTATTTTGCCACAGACCAATAC 59.560 33.333 0.00 0.00 0.00 1.89
1661 8692 5.652994 TTATTTTGCCACAGACCAATACC 57.347 39.130 0.00 0.00 0.00 2.73
1662 8693 1.917872 TTTGCCACAGACCAATACCC 58.082 50.000 0.00 0.00 0.00 3.69
1663 8694 0.774276 TTGCCACAGACCAATACCCA 59.226 50.000 0.00 0.00 0.00 4.51
1664 8695 0.327924 TGCCACAGACCAATACCCAG 59.672 55.000 0.00 0.00 0.00 4.45
1665 8696 0.328258 GCCACAGACCAATACCCAGT 59.672 55.000 0.00 0.00 0.00 4.00
1666 8697 1.271926 GCCACAGACCAATACCCAGTT 60.272 52.381 0.00 0.00 0.00 3.16
1667 8698 2.436417 CCACAGACCAATACCCAGTTG 58.564 52.381 0.00 0.00 0.00 3.16
1668 8699 2.224769 CCACAGACCAATACCCAGTTGT 60.225 50.000 0.00 0.00 0.00 3.32
1669 8700 3.008594 CCACAGACCAATACCCAGTTGTA 59.991 47.826 0.00 0.00 0.00 2.41
1670 8701 4.324254 CCACAGACCAATACCCAGTTGTAT 60.324 45.833 0.00 0.00 32.86 2.29
1671 8702 4.876107 CACAGACCAATACCCAGTTGTATC 59.124 45.833 0.00 0.00 31.14 2.24
1672 8703 4.534500 ACAGACCAATACCCAGTTGTATCA 59.466 41.667 0.00 0.00 31.14 2.15
1673 8704 5.118990 CAGACCAATACCCAGTTGTATCAG 58.881 45.833 0.00 0.00 31.14 2.90
1674 8705 4.783227 AGACCAATACCCAGTTGTATCAGT 59.217 41.667 0.00 0.00 31.14 3.41
1675 8706 5.250774 AGACCAATACCCAGTTGTATCAGTT 59.749 40.000 0.00 0.00 31.14 3.16
1676 8707 5.253330 ACCAATACCCAGTTGTATCAGTTG 58.747 41.667 0.00 0.00 31.14 3.16
1677 8708 5.222048 ACCAATACCCAGTTGTATCAGTTGT 60.222 40.000 0.00 0.00 31.14 3.32
1678 8709 6.013206 ACCAATACCCAGTTGTATCAGTTGTA 60.013 38.462 0.00 0.00 31.14 2.41
1679 8710 6.882140 CCAATACCCAGTTGTATCAGTTGTAA 59.118 38.462 0.00 0.00 31.14 2.41
1680 8711 7.556275 CCAATACCCAGTTGTATCAGTTGTAAT 59.444 37.037 0.00 0.00 31.14 1.89
1681 8712 8.956426 CAATACCCAGTTGTATCAGTTGTAATT 58.044 33.333 0.00 0.00 31.14 1.40
1682 8713 6.817765 ACCCAGTTGTATCAGTTGTAATTG 57.182 37.500 0.00 0.00 0.00 2.32
1683 8714 6.303839 ACCCAGTTGTATCAGTTGTAATTGT 58.696 36.000 0.00 0.00 0.00 2.71
1687 8718 7.173218 CCAGTTGTATCAGTTGTAATTGTCTGT 59.827 37.037 0.00 0.00 0.00 3.41
1731 8771 3.304057 GGCAACAGTTACTTGTTCTCTGC 60.304 47.826 0.00 0.00 39.17 4.26
1733 8773 4.201910 GCAACAGTTACTTGTTCTCTGCAA 60.202 41.667 0.00 0.00 39.17 4.08
1735 8775 5.679734 ACAGTTACTTGTTCTCTGCAATG 57.320 39.130 0.00 0.00 0.00 2.82
1737 8777 3.503748 AGTTACTTGTTCTCTGCAATGCC 59.496 43.478 1.53 0.00 0.00 4.40
1738 8778 1.985473 ACTTGTTCTCTGCAATGCCA 58.015 45.000 1.53 0.00 0.00 4.92
1739 8779 2.522185 ACTTGTTCTCTGCAATGCCAT 58.478 42.857 1.53 0.00 0.00 4.40
1741 8781 1.179152 TGTTCTCTGCAATGCCATGG 58.821 50.000 7.63 7.63 0.00 3.66
1742 8782 0.179119 GTTCTCTGCAATGCCATGGC 60.179 55.000 30.54 30.54 42.35 4.40
1757 8797 5.424121 GCCATGGCACTATTTAGTTGTAG 57.576 43.478 32.08 0.00 41.49 2.74
1761 8801 6.823689 CCATGGCACTATTTAGTTGTAGACTT 59.176 38.462 0.00 0.00 39.86 3.01
1767 8807 9.074443 GCACTATTTAGTTGTAGACTTGTAGTC 57.926 37.037 0.00 0.00 38.85 2.59
1787 8827 4.019860 AGTCCTGCACAGATCAGTTAACAT 60.020 41.667 8.61 0.00 0.00 2.71
1796 8836 5.182001 ACAGATCAGTTAACATTTGGTCAGC 59.818 40.000 8.61 0.00 0.00 4.26
1798 8838 5.645497 AGATCAGTTAACATTTGGTCAGCTC 59.355 40.000 8.61 0.00 0.00 4.09
1800 8840 6.109156 TCAGTTAACATTTGGTCAGCTCTA 57.891 37.500 8.61 0.00 0.00 2.43
1819 8859 8.946085 CAGCTCTAATGTTATCCTTGTTTGTTA 58.054 33.333 0.00 0.00 0.00 2.41
1820 8860 9.167311 AGCTCTAATGTTATCCTTGTTTGTTAG 57.833 33.333 0.00 0.00 0.00 2.34
1838 8882 4.217334 TGTTAGAATTTGCATTTCCAGCGA 59.783 37.500 6.35 0.00 33.85 4.93
1841 8885 3.194116 AGAATTTGCATTTCCAGCGATGT 59.806 39.130 0.00 0.00 33.85 3.06
1845 8889 1.199789 TGCATTTCCAGCGATGTTGTC 59.800 47.619 0.00 0.00 33.85 3.18
1882 8929 7.118390 GCAAACATAGCCTCGTTAATCTCATAT 59.882 37.037 0.00 0.00 0.00 1.78
1903 8950 7.944000 TCATATATATCTGCCATGTTTGTGGTT 59.056 33.333 0.00 0.00 41.47 3.67
1925 8972 8.623030 TGGTTAAACACTATTCAGTTTTGTACC 58.377 33.333 0.00 0.00 38.71 3.34
1944 8994 3.527937 ACCTGACTGTATTGGGTAGGTT 58.472 45.455 0.00 0.00 33.53 3.50
1978 9060 9.909644 ATTGTGTTTAGTAGGCTTATATAGTCG 57.090 33.333 0.00 0.00 32.23 4.18
2002 9084 6.756542 CGTTATGACATGTATCTCTTGTTCCA 59.243 38.462 0.00 0.00 35.12 3.53
2016 9098 0.329596 GTTCCATGCTTCCCTGACCT 59.670 55.000 0.00 0.00 0.00 3.85
2018 9100 1.204146 TCCATGCTTCCCTGACCTAC 58.796 55.000 0.00 0.00 0.00 3.18
2019 9101 1.207791 CCATGCTTCCCTGACCTACT 58.792 55.000 0.00 0.00 0.00 2.57
2020 9102 1.134280 CCATGCTTCCCTGACCTACTG 60.134 57.143 0.00 0.00 0.00 2.74
2021 9103 1.556911 CATGCTTCCCTGACCTACTGT 59.443 52.381 0.00 0.00 0.00 3.55
2049 9131 1.304713 AAATCCCACAGCCAGCCAG 60.305 57.895 0.00 0.00 0.00 4.85
2118 9201 4.041198 TGAACGTCCAGGAGGTTTAAGAAT 59.959 41.667 25.05 4.69 40.09 2.40
2146 9229 3.201708 AGCCAGATCATGCCTTTACTCTT 59.798 43.478 0.00 0.00 0.00 2.85
2152 9235 3.873910 TCATGCCTTTACTCTTGTAGCC 58.126 45.455 0.00 0.00 0.00 3.93
2342 9438 6.434340 ACACTATTTTTCCTCCTGGATTGTTC 59.566 38.462 0.00 0.00 42.81 3.18
2363 9459 4.343231 TCTGCATTTCCTTGAAGCCATTA 58.657 39.130 0.00 0.00 0.00 1.90
2590 9698 3.951775 ACTGGTTTTGTTGCTTGACAA 57.048 38.095 0.00 0.00 37.73 3.18
2640 9749 6.062095 GGGTAGGCAATGTAGATAATTGTGT 58.938 40.000 0.00 0.00 37.35 3.72
2653 9762 7.347508 AGATAATTGTGTTCACGACTTGTAC 57.652 36.000 0.00 0.00 0.00 2.90
2656 9765 0.505655 GTGTTCACGACTTGTACGGC 59.494 55.000 0.00 0.00 34.93 5.68
2662 9771 0.672342 ACGACTTGTACGGCTTCTGT 59.328 50.000 0.00 0.00 34.93 3.41
2667 9776 3.537580 ACTTGTACGGCTTCTGTTTTCA 58.462 40.909 0.00 0.00 0.00 2.69
2672 9781 3.354089 ACGGCTTCTGTTTTCATGTTG 57.646 42.857 0.00 0.00 0.00 3.33
2674 9783 2.053627 GGCTTCTGTTTTCATGTTGCG 58.946 47.619 0.00 0.00 0.00 4.85
2697 9809 5.238650 CGTGGGTATTTGGATTTCAGGTATC 59.761 44.000 0.00 0.00 0.00 2.24
2707 9819 9.573166 TTTGGATTTCAGGTATCTTATGTATGG 57.427 33.333 0.00 0.00 0.00 2.74
2723 9835 4.441792 TGTATGGATCAGTCATTTGGTCG 58.558 43.478 0.00 0.00 0.00 4.79
2730 9842 5.106157 GGATCAGTCATTTGGTCGATTGTTT 60.106 40.000 0.00 0.00 0.00 2.83
2739 9851 3.963665 TGGTCGATTGTTTTCAAGCTTG 58.036 40.909 20.81 20.81 43.11 4.01
2747 9859 6.562640 CGATTGTTTTCAAGCTTGATTGTTGG 60.563 38.462 28.89 11.29 43.11 3.77
2748 9860 5.083533 TGTTTTCAAGCTTGATTGTTGGT 57.916 34.783 28.89 0.00 37.00 3.67
2749 9861 5.486526 TGTTTTCAAGCTTGATTGTTGGTT 58.513 33.333 28.89 0.00 37.00 3.67
2750 9862 6.634805 TGTTTTCAAGCTTGATTGTTGGTTA 58.365 32.000 28.89 8.74 37.00 2.85
2751 9863 7.099764 TGTTTTCAAGCTTGATTGTTGGTTAA 58.900 30.769 28.89 14.25 37.00 2.01
2752 9864 7.277539 TGTTTTCAAGCTTGATTGTTGGTTAAG 59.722 33.333 28.89 0.00 37.00 1.85
2753 9865 6.707440 TTCAAGCTTGATTGTTGGTTAAGA 57.293 33.333 28.89 7.24 37.00 2.10
2754 9866 6.707440 TCAAGCTTGATTGTTGGTTAAGAA 57.293 33.333 25.16 0.00 31.01 2.52
2755 9867 7.288810 TCAAGCTTGATTGTTGGTTAAGAAT 57.711 32.000 25.16 0.00 32.98 2.40
2758 9870 7.951530 AGCTTGATTGTTGGTTAAGAATTTG 57.048 32.000 0.00 0.00 30.71 2.32
2782 9894 2.792674 CCCGTATATACTGTTGTGCACG 59.207 50.000 13.13 0.00 0.00 5.34
2816 9928 0.104120 GGGACAACAACAAACTGGCC 59.896 55.000 0.00 0.00 37.54 5.36
2818 9930 1.111277 GACAACAACAAACTGGCCCT 58.889 50.000 0.00 0.00 0.00 5.19
2842 9954 5.047164 TGTCCAGCAATGCAAATGATACTTT 60.047 36.000 8.35 0.00 0.00 2.66
2843 9955 5.870978 GTCCAGCAATGCAAATGATACTTTT 59.129 36.000 8.35 0.00 0.00 2.27
2958 10072 1.512156 TATGATGCTCGCCGTCGCTA 61.512 55.000 3.26 0.00 35.26 4.26
2971 10085 1.269257 CGTCGCTAGAATCTGCCATCA 60.269 52.381 0.00 0.00 0.00 3.07
2983 10097 4.271696 TCTGCCATCATAGTTATTCGGG 57.728 45.455 0.00 0.00 0.00 5.14
3038 10185 4.098654 CCTGACTGAGTCCTGGTATAGTTG 59.901 50.000 10.52 0.00 0.00 3.16
3054 10201 8.892723 TGGTATAGTTGATACATTTGCTGAAAG 58.107 33.333 0.00 0.00 42.11 2.62
3091 10238 1.822990 CCTGCTTGCACTGAATGGAAT 59.177 47.619 0.00 0.00 38.08 3.01
3102 10249 4.074970 ACTGAATGGAATGAGCGTCTTTT 58.925 39.130 0.00 0.00 0.00 2.27
3197 10349 4.900635 AATTAGGAACAATCATGTCGGC 57.099 40.909 0.00 0.00 39.40 5.54
3281 10433 5.931441 ATTAATAGACGAGGCAGCAAATC 57.069 39.130 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.582647 TCCTGACTTGAAAGGTGCATCTA 59.417 43.478 0.00 0.00 34.94 1.98
12 13 5.048013 GGTGGTTTAATCCTGACTTGAAAGG 60.048 44.000 4.25 0.00 34.65 3.11
36 1290 6.074195 CGCATTGCAAGGGAATATGTATTTTG 60.074 38.462 13.70 0.00 0.00 2.44
125 1379 1.210204 ATCTGTGTGTGGGGCTGGAT 61.210 55.000 0.00 0.00 0.00 3.41
129 1383 1.064463 CCATAATCTGTGTGTGGGGCT 60.064 52.381 0.00 0.00 0.00 5.19
178 1432 0.466124 AGGCGTTGATTAGGAGCTCC 59.534 55.000 26.22 26.22 0.00 4.70
199 1454 0.955905 TATGCAGTACATCGGCGCTA 59.044 50.000 7.64 0.00 40.38 4.26
211 1466 2.974794 TGCTCCCTATGTGATATGCAGT 59.025 45.455 0.00 0.00 0.00 4.40
221 1476 1.134098 CGACCCATTTGCTCCCTATGT 60.134 52.381 0.00 0.00 0.00 2.29
224 1479 0.830648 CTCGACCCATTTGCTCCCTA 59.169 55.000 0.00 0.00 0.00 3.53
244 1499 5.815740 CACATAGCGTAAAAGATTACTGGGT 59.184 40.000 0.00 0.00 39.42 4.51
289 1544 8.442384 GCAAATGAAGAAAAGAACAACAAGAAA 58.558 29.630 0.00 0.00 0.00 2.52
291 1546 6.253298 CGCAAATGAAGAAAAGAACAACAAGA 59.747 34.615 0.00 0.00 0.00 3.02
298 1553 5.703876 AGATCCGCAAATGAAGAAAAGAAC 58.296 37.500 0.00 0.00 0.00 3.01
305 1560 4.326826 AGACAAAGATCCGCAAATGAAGA 58.673 39.130 0.00 0.00 0.00 2.87
309 1580 3.411415 GGAGACAAAGATCCGCAAATG 57.589 47.619 0.00 0.00 0.00 2.32
471 1763 8.936070 AAAGTTCAGGCGTATTTTTAAAACTT 57.064 26.923 0.00 0.00 36.33 2.66
527 1819 6.340522 AGACAGACCATTTTTCAAAACCAAG 58.659 36.000 0.00 0.00 0.00 3.61
530 1822 7.272037 TCTAGACAGACCATTTTTCAAAACC 57.728 36.000 0.00 0.00 0.00 3.27
542 1834 3.093057 AGATGTGCTCTAGACAGACCA 57.907 47.619 0.00 0.00 30.26 4.02
566 1859 4.134379 AGATGTGCAATCACTAGGTCAG 57.866 45.455 10.26 0.00 43.49 3.51
639 1938 9.617523 AAGTCATATGTCATTGATGTTACATGA 57.382 29.630 1.24 0.00 34.54 3.07
647 1946 8.228464 GCACATCTAAGTCATATGTCATTGATG 58.772 37.037 19.32 19.32 31.60 3.07
675 4542 2.352388 TGCCTTAAGTATTGCACGTCC 58.648 47.619 0.97 0.00 0.00 4.79
678 4545 7.090808 TCTAGATATGCCTTAAGTATTGCACG 58.909 38.462 6.32 0.00 36.41 5.34
737 7720 4.167268 TCGGTTTTCTGTTTGGTTTTTCG 58.833 39.130 0.00 0.00 0.00 3.46
738 7721 6.656314 ATTCGGTTTTCTGTTTGGTTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
744 7727 5.593010 TGGTTTATTCGGTTTTCTGTTTGG 58.407 37.500 0.00 0.00 0.00 3.28
770 7755 5.629435 CGCTTGGTTTCTTTTCCTGTTTATC 59.371 40.000 0.00 0.00 0.00 1.75
784 7769 1.609072 AGCTTTCCTTCGCTTGGTTTC 59.391 47.619 0.00 0.00 31.17 2.78
787 7772 2.561478 TAAGCTTTCCTTCGCTTGGT 57.439 45.000 3.20 0.00 45.31 3.67
799 7784 2.459644 TGGGAGCATTGCATAAGCTTT 58.540 42.857 11.91 0.00 42.74 3.51
875 7866 1.647545 CGCGCAACAAGGATGACCAT 61.648 55.000 8.75 0.00 38.94 3.55
876 7867 2.324330 CGCGCAACAAGGATGACCA 61.324 57.895 8.75 0.00 38.94 4.02
877 7868 1.852067 AACGCGCAACAAGGATGACC 61.852 55.000 5.73 0.00 0.00 4.02
878 7869 0.452784 GAACGCGCAACAAGGATGAC 60.453 55.000 5.73 0.00 0.00 3.06
879 7870 0.602638 AGAACGCGCAACAAGGATGA 60.603 50.000 5.73 0.00 0.00 2.92
880 7871 0.179215 GAGAACGCGCAACAAGGATG 60.179 55.000 5.73 0.00 0.00 3.51
881 7872 1.298859 GGAGAACGCGCAACAAGGAT 61.299 55.000 5.73 0.00 0.00 3.24
882 7873 1.959226 GGAGAACGCGCAACAAGGA 60.959 57.895 5.73 0.00 0.00 3.36
883 7874 1.577328 ATGGAGAACGCGCAACAAGG 61.577 55.000 5.73 0.00 0.00 3.61
884 7875 0.238289 AATGGAGAACGCGCAACAAG 59.762 50.000 5.73 0.00 0.00 3.16
885 7876 0.040514 CAATGGAGAACGCGCAACAA 60.041 50.000 5.73 0.00 0.00 2.83
886 7877 1.573932 CAATGGAGAACGCGCAACA 59.426 52.632 5.73 0.00 0.00 3.33
887 7878 1.797537 GCAATGGAGAACGCGCAAC 60.798 57.895 5.73 0.00 0.00 4.17
888 7879 2.560861 GCAATGGAGAACGCGCAA 59.439 55.556 5.73 0.00 0.00 4.85
889 7880 3.430862 GGCAATGGAGAACGCGCA 61.431 61.111 5.73 0.00 0.00 6.09
890 7881 3.430862 TGGCAATGGAGAACGCGC 61.431 61.111 5.73 0.00 0.00 6.86
891 7882 1.577328 AAGTGGCAATGGAGAACGCG 61.577 55.000 3.53 3.53 0.00 6.01
892 7883 0.598065 AAAGTGGCAATGGAGAACGC 59.402 50.000 0.00 0.00 0.00 4.84
893 7884 1.068333 CCAAAGTGGCAATGGAGAACG 60.068 52.381 9.04 0.00 36.27 3.95
894 7885 1.273327 CCCAAAGTGGCAATGGAGAAC 59.727 52.381 14.77 0.00 35.79 3.01
895 7886 1.631405 CCCAAAGTGGCAATGGAGAA 58.369 50.000 14.77 0.00 35.79 2.87
896 7887 3.362040 CCCAAAGTGGCAATGGAGA 57.638 52.632 14.77 0.00 35.79 3.71
1006 8002 0.618968 GAAAGAGCAGGGGGAGGAGA 60.619 60.000 0.00 0.00 0.00 3.71
1011 8007 2.614013 GGGGAAAGAGCAGGGGGA 60.614 66.667 0.00 0.00 0.00 4.81
1121 8132 1.302511 ATGCGCCACGGAAGAAAGT 60.303 52.632 4.18 0.00 0.00 2.66
1149 8160 4.738740 CCCAAGAATACGTTCGCTAGTTAG 59.261 45.833 0.00 0.00 39.38 2.34
1154 8165 1.826720 ACCCCAAGAATACGTTCGCTA 59.173 47.619 0.00 0.00 39.38 4.26
1160 8171 0.676782 GCTGCACCCCAAGAATACGT 60.677 55.000 0.00 0.00 0.00 3.57
1163 8174 1.077787 CGGCTGCACCCCAAGAATA 60.078 57.895 0.50 0.00 33.26 1.75
1283 8299 3.077556 AGGTACCTGGAGCAGCGG 61.078 66.667 15.42 0.00 0.00 5.52
1395 8411 8.046708 TGATCATAGAAGAAATCCGAGGAAAAA 58.953 33.333 0.00 0.00 0.00 1.94
1396 8412 7.564793 TGATCATAGAAGAAATCCGAGGAAAA 58.435 34.615 0.00 0.00 0.00 2.29
1397 8413 7.124573 TGATCATAGAAGAAATCCGAGGAAA 57.875 36.000 0.00 0.00 0.00 3.13
1404 8420 6.991531 AGAGCACTTGATCATAGAAGAAATCC 59.008 38.462 0.00 0.00 31.88 3.01
1406 8422 6.700960 CGAGAGCACTTGATCATAGAAGAAAT 59.299 38.462 0.00 0.00 31.88 2.17
1414 8430 5.268118 ACAATCGAGAGCACTTGATCATA 57.732 39.130 13.56 0.00 43.98 2.15
1426 8442 3.179048 TGATGTGCGTAACAATCGAGAG 58.821 45.455 0.00 0.00 43.61 3.20
1430 8446 4.320667 TCTTTGATGTGCGTAACAATCG 57.679 40.909 0.00 0.00 43.61 3.34
1431 8447 5.448438 TGTTCTTTGATGTGCGTAACAATC 58.552 37.500 0.00 0.00 43.61 2.67
1432 8448 5.431420 TGTTCTTTGATGTGCGTAACAAT 57.569 34.783 0.00 0.00 43.61 2.71
1433 8449 4.884458 TGTTCTTTGATGTGCGTAACAA 57.116 36.364 0.00 0.00 43.61 2.83
1434 8450 5.388994 CGTATGTTCTTTGATGTGCGTAACA 60.389 40.000 0.00 0.00 44.79 2.41
1450 8469 4.921470 TTTACTTGCAGCTCGTATGTTC 57.079 40.909 0.00 0.00 0.00 3.18
1462 8481 8.347004 TGATTAACATTCCAGATTTACTTGCA 57.653 30.769 0.00 0.00 0.00 4.08
1509 8540 9.598517 GGATGATGGTCTATTGCAAAATAAAAA 57.401 29.630 1.71 0.00 0.00 1.94
1510 8541 8.756927 TGGATGATGGTCTATTGCAAAATAAAA 58.243 29.630 1.71 0.00 0.00 1.52
1523 8554 5.221521 GCTGATACAGTTGGATGATGGTCTA 60.222 44.000 0.00 0.00 33.43 2.59
1525 8556 3.812053 GCTGATACAGTTGGATGATGGTC 59.188 47.826 0.00 0.00 33.43 4.02
1529 8560 6.737720 TTCTAGCTGATACAGTTGGATGAT 57.262 37.500 0.00 0.00 33.15 2.45
1530 8561 5.452496 GCTTCTAGCTGATACAGTTGGATGA 60.452 44.000 14.48 0.00 38.45 2.92
1531 8562 4.749099 GCTTCTAGCTGATACAGTTGGATG 59.251 45.833 0.00 0.00 38.45 3.51
1533 8564 3.769300 TGCTTCTAGCTGATACAGTTGGA 59.231 43.478 0.00 0.00 42.97 3.53
1538 8569 3.992643 AGCATGCTTCTAGCTGATACAG 58.007 45.455 16.30 0.00 42.97 2.74
1558 8589 4.673375 AGCAACCAGGCCTGCCAG 62.673 66.667 28.39 18.46 39.47 4.85
1587 8618 4.637534 AGGTGTGTTTTGCTATGCTGATAG 59.362 41.667 0.00 0.00 35.51 2.08
1588 8619 4.588899 AGGTGTGTTTTGCTATGCTGATA 58.411 39.130 0.00 0.00 0.00 2.15
1589 8620 3.424703 AGGTGTGTTTTGCTATGCTGAT 58.575 40.909 0.00 0.00 0.00 2.90
1590 8621 2.862541 AGGTGTGTTTTGCTATGCTGA 58.137 42.857 0.00 0.00 0.00 4.26
1591 8622 3.424829 CGTAGGTGTGTTTTGCTATGCTG 60.425 47.826 0.00 0.00 0.00 4.41
1592 8623 2.742053 CGTAGGTGTGTTTTGCTATGCT 59.258 45.455 0.00 0.00 0.00 3.79
1593 8624 2.739913 TCGTAGGTGTGTTTTGCTATGC 59.260 45.455 0.00 0.00 0.00 3.14
1594 8625 3.181520 GCTCGTAGGTGTGTTTTGCTATG 60.182 47.826 0.00 0.00 0.00 2.23
1595 8626 3.000727 GCTCGTAGGTGTGTTTTGCTAT 58.999 45.455 0.00 0.00 0.00 2.97
1596 8627 2.224090 TGCTCGTAGGTGTGTTTTGCTA 60.224 45.455 0.00 0.00 0.00 3.49
1597 8628 1.226746 GCTCGTAGGTGTGTTTTGCT 58.773 50.000 0.00 0.00 0.00 3.91
1598 8629 0.941542 TGCTCGTAGGTGTGTTTTGC 59.058 50.000 0.00 0.00 0.00 3.68
1599 8630 3.994392 ACTATGCTCGTAGGTGTGTTTTG 59.006 43.478 1.71 0.00 0.00 2.44
1600 8631 3.994392 CACTATGCTCGTAGGTGTGTTTT 59.006 43.478 1.71 0.00 0.00 2.43
1601 8632 3.257375 TCACTATGCTCGTAGGTGTGTTT 59.743 43.478 1.71 0.00 0.00 2.83
1602 8633 2.823747 TCACTATGCTCGTAGGTGTGTT 59.176 45.455 1.71 0.00 0.00 3.32
1603 8634 2.163815 GTCACTATGCTCGTAGGTGTGT 59.836 50.000 1.71 0.00 0.00 3.72
1604 8635 2.791503 CGTCACTATGCTCGTAGGTGTG 60.792 54.545 1.71 0.00 0.00 3.82
1605 8636 1.400846 CGTCACTATGCTCGTAGGTGT 59.599 52.381 1.71 0.00 0.00 4.16
1606 8637 1.860399 GCGTCACTATGCTCGTAGGTG 60.860 57.143 1.71 0.00 34.60 4.00
1607 8638 0.381089 GCGTCACTATGCTCGTAGGT 59.619 55.000 1.71 0.00 34.60 3.08
1608 8639 0.380733 TGCGTCACTATGCTCGTAGG 59.619 55.000 1.71 0.00 38.53 3.18
1609 8640 2.112522 CTTGCGTCACTATGCTCGTAG 58.887 52.381 0.00 0.00 38.53 3.51
1610 8641 1.741145 TCTTGCGTCACTATGCTCGTA 59.259 47.619 0.00 0.00 38.53 3.43
1611 8642 0.526211 TCTTGCGTCACTATGCTCGT 59.474 50.000 0.00 0.00 38.53 4.18
1612 8643 1.629013 TTCTTGCGTCACTATGCTCG 58.371 50.000 0.00 0.00 38.53 5.03
1613 8644 4.142816 ACAATTTCTTGCGTCACTATGCTC 60.143 41.667 0.00 0.00 38.53 4.26
1614 8645 3.753272 ACAATTTCTTGCGTCACTATGCT 59.247 39.130 0.00 0.00 38.53 3.79
1615 8646 4.083581 ACAATTTCTTGCGTCACTATGC 57.916 40.909 0.00 0.00 35.69 3.14
1616 8647 6.991485 AAAACAATTTCTTGCGTCACTATG 57.009 33.333 0.00 0.00 35.69 2.23
1617 8648 9.691362 AATAAAAACAATTTCTTGCGTCACTAT 57.309 25.926 0.00 0.00 35.69 2.12
1618 8649 9.522804 AAATAAAAACAATTTCTTGCGTCACTA 57.477 25.926 0.00 0.00 35.69 2.74
1619 8650 8.419076 AAATAAAAACAATTTCTTGCGTCACT 57.581 26.923 0.00 0.00 35.69 3.41
1620 8651 8.932963 CAAAATAAAAACAATTTCTTGCGTCAC 58.067 29.630 0.00 0.00 35.69 3.67
1621 8652 7.637907 GCAAAATAAAAACAATTTCTTGCGTCA 59.362 29.630 0.00 0.00 35.69 4.35
1622 8653 7.111455 GGCAAAATAAAAACAATTTCTTGCGTC 59.889 33.333 0.00 0.00 33.70 5.19
1623 8654 6.909895 GGCAAAATAAAAACAATTTCTTGCGT 59.090 30.769 0.00 0.00 33.70 5.24
1624 8655 6.909357 TGGCAAAATAAAAACAATTTCTTGCG 59.091 30.769 0.00 0.00 33.70 4.85
1625 8656 7.699812 TGTGGCAAAATAAAAACAATTTCTTGC 59.300 29.630 0.00 0.00 35.69 4.01
1626 8657 9.224058 CTGTGGCAAAATAAAAACAATTTCTTG 57.776 29.630 0.00 0.00 38.39 3.02
1627 8658 9.171877 TCTGTGGCAAAATAAAAACAATTTCTT 57.828 25.926 0.00 0.00 0.00 2.52
1628 8659 8.611757 GTCTGTGGCAAAATAAAAACAATTTCT 58.388 29.630 0.00 0.00 0.00 2.52
1629 8660 7.855409 GGTCTGTGGCAAAATAAAAACAATTTC 59.145 33.333 0.00 0.00 0.00 2.17
1630 8661 7.337942 TGGTCTGTGGCAAAATAAAAACAATTT 59.662 29.630 0.00 0.00 0.00 1.82
1631 8662 6.825721 TGGTCTGTGGCAAAATAAAAACAATT 59.174 30.769 0.00 0.00 0.00 2.32
1632 8663 6.352516 TGGTCTGTGGCAAAATAAAAACAAT 58.647 32.000 0.00 0.00 0.00 2.71
1633 8664 5.734720 TGGTCTGTGGCAAAATAAAAACAA 58.265 33.333 0.00 0.00 0.00 2.83
1634 8665 5.344743 TGGTCTGTGGCAAAATAAAAACA 57.655 34.783 0.00 0.00 0.00 2.83
1635 8666 6.859420 ATTGGTCTGTGGCAAAATAAAAAC 57.141 33.333 0.00 0.00 0.00 2.43
1636 8667 6.931840 GGTATTGGTCTGTGGCAAAATAAAAA 59.068 34.615 0.00 0.00 0.00 1.94
1637 8668 6.459923 GGTATTGGTCTGTGGCAAAATAAAA 58.540 36.000 0.00 0.00 0.00 1.52
1638 8669 5.046950 GGGTATTGGTCTGTGGCAAAATAAA 60.047 40.000 0.00 0.00 0.00 1.40
1639 8670 4.464597 GGGTATTGGTCTGTGGCAAAATAA 59.535 41.667 0.00 0.00 0.00 1.40
1640 8671 4.020543 GGGTATTGGTCTGTGGCAAAATA 58.979 43.478 0.00 0.00 0.00 1.40
1641 8672 2.831526 GGGTATTGGTCTGTGGCAAAAT 59.168 45.455 0.00 0.00 0.00 1.82
1642 8673 2.243810 GGGTATTGGTCTGTGGCAAAA 58.756 47.619 0.00 0.00 0.00 2.44
1643 8674 1.145945 TGGGTATTGGTCTGTGGCAAA 59.854 47.619 0.00 0.00 0.00 3.68
1644 8675 0.774276 TGGGTATTGGTCTGTGGCAA 59.226 50.000 0.00 0.00 0.00 4.52
1645 8676 0.327924 CTGGGTATTGGTCTGTGGCA 59.672 55.000 0.00 0.00 0.00 4.92
1646 8677 0.328258 ACTGGGTATTGGTCTGTGGC 59.672 55.000 0.00 0.00 0.00 5.01
1647 8678 2.224769 ACAACTGGGTATTGGTCTGTGG 60.225 50.000 0.00 0.00 0.00 4.17
1648 8679 3.140325 ACAACTGGGTATTGGTCTGTG 57.860 47.619 0.00 0.00 0.00 3.66
1649 8680 4.534500 TGATACAACTGGGTATTGGTCTGT 59.466 41.667 0.00 0.00 34.22 3.41
1650 8681 5.097742 TGATACAACTGGGTATTGGTCTG 57.902 43.478 0.00 0.00 34.22 3.51
1651 8682 4.783227 ACTGATACAACTGGGTATTGGTCT 59.217 41.667 0.00 0.00 34.22 3.85
1652 8683 5.099042 ACTGATACAACTGGGTATTGGTC 57.901 43.478 0.00 0.00 34.22 4.02
1653 8684 5.222048 ACAACTGATACAACTGGGTATTGGT 60.222 40.000 0.00 0.00 34.22 3.67
1654 8685 5.253330 ACAACTGATACAACTGGGTATTGG 58.747 41.667 0.00 0.00 34.22 3.16
1655 8686 7.915293 TTACAACTGATACAACTGGGTATTG 57.085 36.000 0.00 0.00 34.22 1.90
1656 8687 8.956426 CAATTACAACTGATACAACTGGGTATT 58.044 33.333 0.00 0.00 34.22 1.89
1657 8688 8.107095 ACAATTACAACTGATACAACTGGGTAT 58.893 33.333 0.00 0.00 36.70 2.73
1658 8689 7.455058 ACAATTACAACTGATACAACTGGGTA 58.545 34.615 0.00 0.00 0.00 3.69
1659 8690 6.303839 ACAATTACAACTGATACAACTGGGT 58.696 36.000 0.00 0.00 0.00 4.51
1660 8691 6.655003 AGACAATTACAACTGATACAACTGGG 59.345 38.462 0.00 0.00 0.00 4.45
1661 8692 7.173218 ACAGACAATTACAACTGATACAACTGG 59.827 37.037 0.00 0.00 34.88 4.00
1662 8693 8.011673 CACAGACAATTACAACTGATACAACTG 58.988 37.037 0.00 0.00 34.88 3.16
1663 8694 7.307989 GCACAGACAATTACAACTGATACAACT 60.308 37.037 0.00 0.00 34.88 3.16
1664 8695 6.797033 GCACAGACAATTACAACTGATACAAC 59.203 38.462 0.00 0.00 34.88 3.32
1665 8696 6.710295 AGCACAGACAATTACAACTGATACAA 59.290 34.615 0.00 0.00 34.88 2.41
1666 8697 6.147656 CAGCACAGACAATTACAACTGATACA 59.852 38.462 0.00 0.00 34.88 2.29
1667 8698 6.402550 CCAGCACAGACAATTACAACTGATAC 60.403 42.308 0.00 0.00 34.88 2.24
1668 8699 5.643348 CCAGCACAGACAATTACAACTGATA 59.357 40.000 0.00 0.00 34.88 2.15
1669 8700 4.456911 CCAGCACAGACAATTACAACTGAT 59.543 41.667 0.00 0.00 34.88 2.90
1670 8701 3.814842 CCAGCACAGACAATTACAACTGA 59.185 43.478 0.00 0.00 34.88 3.41
1671 8702 3.610114 GCCAGCACAGACAATTACAACTG 60.610 47.826 0.00 0.00 36.58 3.16
1672 8703 2.554032 GCCAGCACAGACAATTACAACT 59.446 45.455 0.00 0.00 0.00 3.16
1673 8704 2.351738 GGCCAGCACAGACAATTACAAC 60.352 50.000 0.00 0.00 0.00 3.32
1674 8705 1.885887 GGCCAGCACAGACAATTACAA 59.114 47.619 0.00 0.00 0.00 2.41
1675 8706 1.202867 TGGCCAGCACAGACAATTACA 60.203 47.619 0.00 0.00 0.00 2.41
1676 8707 1.200020 GTGGCCAGCACAGACAATTAC 59.800 52.381 5.11 0.00 0.00 1.89
1677 8708 1.202867 TGTGGCCAGCACAGACAATTA 60.203 47.619 5.11 0.00 0.00 1.40
1678 8709 0.467844 TGTGGCCAGCACAGACAATT 60.468 50.000 5.11 0.00 0.00 2.32
1679 8710 0.251474 ATGTGGCCAGCACAGACAAT 60.251 50.000 5.11 0.00 35.89 2.71
1680 8711 1.151221 ATGTGGCCAGCACAGACAA 59.849 52.632 5.11 0.00 35.89 3.18
1681 8712 1.601477 CATGTGGCCAGCACAGACA 60.601 57.895 5.11 0.00 35.89 3.41
1682 8713 2.338015 CCATGTGGCCAGCACAGAC 61.338 63.158 5.11 0.00 35.89 3.51
1683 8714 2.034532 CCATGTGGCCAGCACAGA 59.965 61.111 5.11 0.00 35.89 3.41
1701 8732 1.956477 AGTAACTGTTGCCAAAGCTGG 59.044 47.619 2.69 0.00 46.65 4.85
1706 8737 4.947388 AGAGAACAAGTAACTGTTGCCAAA 59.053 37.500 2.69 0.00 39.63 3.28
1707 8738 4.335315 CAGAGAACAAGTAACTGTTGCCAA 59.665 41.667 2.69 0.00 39.63 4.52
1712 8743 5.506317 GCATTGCAGAGAACAAGTAACTGTT 60.506 40.000 3.15 0.00 42.23 3.16
1721 8761 1.546923 CCATGGCATTGCAGAGAACAA 59.453 47.619 11.39 0.00 0.00 2.83
1735 8775 5.007724 GTCTACAACTAAATAGTGCCATGGC 59.992 44.000 30.54 30.54 36.50 4.40
1737 8777 7.334421 ACAAGTCTACAACTAAATAGTGCCATG 59.666 37.037 0.00 0.00 37.17 3.66
1738 8778 7.394816 ACAAGTCTACAACTAAATAGTGCCAT 58.605 34.615 0.00 0.00 37.17 4.40
1739 8779 6.765403 ACAAGTCTACAACTAAATAGTGCCA 58.235 36.000 0.00 0.00 37.17 4.92
1741 8781 8.983307 ACTACAAGTCTACAACTAAATAGTGC 57.017 34.615 0.00 0.00 37.17 4.40
1742 8782 9.570488 GGACTACAAGTCTACAACTAAATAGTG 57.430 37.037 6.99 0.00 44.46 2.74
1743 8783 9.531158 AGGACTACAAGTCTACAACTAAATAGT 57.469 33.333 6.99 0.00 44.46 2.12
1745 8785 8.248945 GCAGGACTACAAGTCTACAACTAAATA 58.751 37.037 6.99 0.00 44.46 1.40
1746 8786 7.097834 GCAGGACTACAAGTCTACAACTAAAT 58.902 38.462 6.99 0.00 44.46 1.40
1747 8787 6.041182 TGCAGGACTACAAGTCTACAACTAAA 59.959 38.462 6.99 0.00 44.46 1.85
1748 8788 5.537295 TGCAGGACTACAAGTCTACAACTAA 59.463 40.000 6.99 0.00 44.46 2.24
1749 8789 5.048224 GTGCAGGACTACAAGTCTACAACTA 60.048 44.000 6.99 0.00 44.46 2.24
1750 8790 3.895656 TGCAGGACTACAAGTCTACAACT 59.104 43.478 6.99 0.00 44.46 3.16
1751 8791 3.988517 GTGCAGGACTACAAGTCTACAAC 59.011 47.826 6.99 0.00 44.46 3.32
1752 8792 3.639561 TGTGCAGGACTACAAGTCTACAA 59.360 43.478 6.99 0.00 44.46 2.41
1753 8793 3.227614 TGTGCAGGACTACAAGTCTACA 58.772 45.455 6.99 5.38 44.46 2.74
1754 8794 3.506455 TCTGTGCAGGACTACAAGTCTAC 59.494 47.826 6.99 3.27 44.46 2.59
1755 8795 3.763057 TCTGTGCAGGACTACAAGTCTA 58.237 45.455 6.99 0.00 44.46 2.59
1756 8796 2.598565 TCTGTGCAGGACTACAAGTCT 58.401 47.619 6.99 0.00 44.46 3.24
1757 8797 3.056536 TGATCTGTGCAGGACTACAAGTC 60.057 47.826 0.00 0.00 44.32 3.01
1761 8801 2.529632 ACTGATCTGTGCAGGACTACA 58.470 47.619 4.21 0.00 37.69 2.74
1767 8807 5.396484 CAAATGTTAACTGATCTGTGCAGG 58.604 41.667 5.96 0.00 37.69 4.85
1787 8827 6.313519 AGGATAACATTAGAGCTGACCAAA 57.686 37.500 0.00 0.00 0.00 3.28
1819 8859 3.194116 ACATCGCTGGAAATGCAAATTCT 59.806 39.130 13.38 0.00 0.00 2.40
1820 8860 3.514645 ACATCGCTGGAAATGCAAATTC 58.485 40.909 6.98 6.98 0.00 2.17
1838 8882 2.849880 GCATTATGCGGTGACAACAT 57.150 45.000 0.00 0.00 31.71 2.71
1882 8929 7.394641 TGTTTAACCACAAACATGGCAGATATA 59.605 33.333 0.00 0.00 44.33 0.86
1896 8943 8.524487 ACAAAACTGAATAGTGTTTAACCACAA 58.476 29.630 5.90 0.00 37.19 3.33
1903 8950 9.048446 GTCAGGTACAAAACTGAATAGTGTTTA 57.952 33.333 1.68 0.00 44.53 2.01
1925 8972 3.689649 GCAAACCTACCCAATACAGTCAG 59.310 47.826 0.00 0.00 0.00 3.51
1944 8994 5.534654 AGCCTACTAAACACAATTTGAGCAA 59.465 36.000 2.79 0.00 0.00 3.91
1999 9081 1.204146 GTAGGTCAGGGAAGCATGGA 58.796 55.000 0.00 0.00 0.00 3.41
2002 9084 1.834263 GACAGTAGGTCAGGGAAGCAT 59.166 52.381 0.00 0.00 46.19 3.79
2016 9098 3.072330 TGGGATTTGAGCAACAGACAGTA 59.928 43.478 0.00 0.00 0.00 2.74
2018 9100 2.227388 GTGGGATTTGAGCAACAGACAG 59.773 50.000 0.00 0.00 0.00 3.51
2019 9101 2.229792 GTGGGATTTGAGCAACAGACA 58.770 47.619 0.00 0.00 0.00 3.41
2020 9102 2.227388 CTGTGGGATTTGAGCAACAGAC 59.773 50.000 0.00 0.00 37.76 3.51
2021 9103 2.507484 CTGTGGGATTTGAGCAACAGA 58.493 47.619 0.00 0.00 37.76 3.41
2118 9201 1.977056 GGCATGATCTGGCTTGATGA 58.023 50.000 0.00 0.00 46.59 2.92
2146 9229 2.799126 AATCCAACATTCCGGCTACA 57.201 45.000 0.00 0.00 0.00 2.74
2152 9235 2.539547 CGCTGCTAAATCCAACATTCCG 60.540 50.000 0.00 0.00 0.00 4.30
2227 9314 2.307098 AGAATCCTCACAGGTCCCAAAG 59.693 50.000 0.00 0.00 36.53 2.77
2342 9438 3.604875 AATGGCTTCAAGGAAATGCAG 57.395 42.857 0.00 0.00 0.00 4.41
2363 9459 5.733620 ATGGCATCTCAGAACAAACAATT 57.266 34.783 0.00 0.00 0.00 2.32
2456 9554 9.167311 ACAAAATGCCAATAACACAAGTAAAAA 57.833 25.926 0.00 0.00 0.00 1.94
2640 9749 1.338973 AGAAGCCGTACAAGTCGTGAA 59.661 47.619 0.00 0.00 0.00 3.18
2653 9762 2.053627 GCAACATGAAAACAGAAGCCG 58.946 47.619 0.00 0.00 0.00 5.52
2656 9765 3.044986 CCACGCAACATGAAAACAGAAG 58.955 45.455 0.00 0.00 0.00 2.85
2662 9771 4.302455 CAAATACCCACGCAACATGAAAA 58.698 39.130 0.00 0.00 0.00 2.29
2667 9776 2.208132 TCCAAATACCCACGCAACAT 57.792 45.000 0.00 0.00 0.00 2.71
2672 9781 2.099098 CCTGAAATCCAAATACCCACGC 59.901 50.000 0.00 0.00 0.00 5.34
2674 9783 6.365520 AGATACCTGAAATCCAAATACCCAC 58.634 40.000 0.00 0.00 0.00 4.61
2697 9809 7.095481 CGACCAAATGACTGATCCATACATAAG 60.095 40.741 0.00 0.00 0.00 1.73
2705 9817 3.912496 ATCGACCAAATGACTGATCCA 57.088 42.857 0.00 0.00 0.00 3.41
2707 9819 5.551760 AACAATCGACCAAATGACTGATC 57.448 39.130 0.00 0.00 0.00 2.92
2723 9835 6.258507 ACCAACAATCAAGCTTGAAAACAATC 59.741 34.615 31.55 0.00 41.13 2.67
2730 9842 6.707440 TCTTAACCAACAATCAAGCTTGAA 57.293 33.333 31.55 16.04 41.13 2.69
2739 9851 6.804783 CGGGTACAAATTCTTAACCAACAATC 59.195 38.462 0.00 0.00 31.58 2.67
2750 9862 9.321562 CAACAGTATATACGGGTACAAATTCTT 57.678 33.333 16.02 0.00 0.00 2.52
2751 9863 8.480501 ACAACAGTATATACGGGTACAAATTCT 58.519 33.333 16.02 0.00 0.00 2.40
2752 9864 8.545420 CACAACAGTATATACGGGTACAAATTC 58.455 37.037 16.02 0.00 0.00 2.17
2753 9865 7.011669 GCACAACAGTATATACGGGTACAAATT 59.988 37.037 16.02 0.00 0.00 1.82
2754 9866 6.480981 GCACAACAGTATATACGGGTACAAAT 59.519 38.462 16.02 0.00 0.00 2.32
2755 9867 5.811613 GCACAACAGTATATACGGGTACAAA 59.188 40.000 16.02 0.00 0.00 2.83
2758 9870 4.741676 GTGCACAACAGTATATACGGGTAC 59.258 45.833 13.17 5.78 0.00 3.34
2782 9894 2.790433 TGTCCCTTGGTAACTGCAATC 58.210 47.619 0.00 0.00 37.61 2.67
2816 9928 1.546923 TCATTTGCATTGCTGGACAGG 59.453 47.619 10.49 0.00 0.00 4.00
2818 9930 4.018490 AGTATCATTTGCATTGCTGGACA 58.982 39.130 10.49 0.00 0.00 4.02
2958 10072 6.169094 CCGAATAACTATGATGGCAGATTCT 58.831 40.000 0.00 0.00 0.00 2.40
2983 10097 4.363999 CTCACATAAGACTCCAATCGTCC 58.636 47.826 0.00 0.00 31.83 4.79
3062 10209 1.020333 GTGCAAGCAGGAGAGCAGAG 61.020 60.000 0.00 0.00 37.72 3.35
3091 10238 0.662619 CTTGTGGCAAAAGACGCTCA 59.337 50.000 12.22 0.00 0.00 4.26
3102 10249 1.271871 ACCATCGGAAATCTTGTGGCA 60.272 47.619 0.00 0.00 0.00 4.92
3173 10325 5.733373 GCCGACATGATTGTTCCTAATTTCC 60.733 44.000 0.00 0.00 35.79 3.13
3197 10349 6.173339 ACATTACACAAGGTCCATAACTCTG 58.827 40.000 0.00 0.00 0.00 3.35
3281 10433 1.527844 GCATGAGGGGCTAAGGCAG 60.528 63.158 0.00 0.00 40.87 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.