Multiple sequence alignment - TraesCS3A01G508400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G508400 chr3A 100.000 2412 0 0 1 2412 729589733 729592144 0.000000e+00 4455
1 TraesCS3A01G508400 chr3A 86.813 1964 146 58 388 2272 729606972 729608901 0.000000e+00 2087
2 TraesCS3A01G508400 chr3A 98.425 127 2 0 2286 2412 729597181 729597307 8.680000e-55 224
3 TraesCS3A01G508400 chr3D 91.434 1646 83 17 670 2272 599340416 599342046 0.000000e+00 2206
4 TraesCS3A01G508400 chr3D 97.163 141 3 1 2273 2412 519352749 519352889 1.110000e-58 237
5 TraesCS3A01G508400 chr3D 96.454 141 4 1 2273 2412 519347860 519348000 5.190000e-57 231
6 TraesCS3A01G508400 chr3B 91.688 1588 77 19 670 2225 807220311 807221875 0.000000e+00 2150
7 TraesCS3A01G508400 chr3B 89.028 1121 76 30 384 1476 807230557 807231658 0.000000e+00 1345
8 TraesCS3A01G508400 chr2B 90.196 612 54 5 1 610 385174221 385174828 0.000000e+00 793
9 TraesCS3A01G508400 chr2B 96.454 141 4 1 2273 2412 794702327 794702187 5.190000e-57 231
10 TraesCS3A01G508400 chr2B 96.454 141 4 1 2273 2412 794727818 794727678 5.190000e-57 231
11 TraesCS3A01G508400 chr1D 89.951 617 55 6 1 615 314981371 314980760 0.000000e+00 789
12 TraesCS3A01G508400 chr1D 93.007 143 8 2 2272 2412 470558405 470558547 8.740000e-50 207
13 TraesCS3A01G508400 chr1D 92.199 141 10 1 2273 2412 470565618 470565758 5.260000e-47 198
14 TraesCS3A01G508400 chr2D 89.706 612 58 4 1 611 30465667 30465060 0.000000e+00 776
15 TraesCS3A01G508400 chr2A 89.396 613 59 5 1 611 416931767 416931159 0.000000e+00 767
16 TraesCS3A01G508400 chr2A 85.211 142 19 2 2272 2412 526314431 526314571 6.950000e-31 145
17 TraesCS3A01G508400 chr4D 88.979 617 64 3 1 616 6070350 6069737 0.000000e+00 760
18 TraesCS3A01G508400 chr4D 88.943 615 60 6 1 612 42273786 42274395 0.000000e+00 752
19 TraesCS3A01G508400 chr7D 88.339 626 69 3 1 624 57700219 57699596 0.000000e+00 749
20 TraesCS3A01G508400 chr5B 88.871 611 64 3 1 611 401002160 401002766 0.000000e+00 749
21 TraesCS3A01G508400 chr1A 88.725 612 64 4 1 611 395430598 395429991 0.000000e+00 743


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G508400 chr3A 729589733 729592144 2411 False 4455 4455 100.000 1 2412 1 chr3A.!!$F1 2411
1 TraesCS3A01G508400 chr3A 729606972 729608901 1929 False 2087 2087 86.813 388 2272 1 chr3A.!!$F3 1884
2 TraesCS3A01G508400 chr3D 599340416 599342046 1630 False 2206 2206 91.434 670 2272 1 chr3D.!!$F3 1602
3 TraesCS3A01G508400 chr3B 807220311 807221875 1564 False 2150 2150 91.688 670 2225 1 chr3B.!!$F1 1555
4 TraesCS3A01G508400 chr3B 807230557 807231658 1101 False 1345 1345 89.028 384 1476 1 chr3B.!!$F2 1092
5 TraesCS3A01G508400 chr2B 385174221 385174828 607 False 793 793 90.196 1 610 1 chr2B.!!$F1 609
6 TraesCS3A01G508400 chr1D 314980760 314981371 611 True 789 789 89.951 1 615 1 chr1D.!!$R1 614
7 TraesCS3A01G508400 chr2D 30465060 30465667 607 True 776 776 89.706 1 611 1 chr2D.!!$R1 610
8 TraesCS3A01G508400 chr2A 416931159 416931767 608 True 767 767 89.396 1 611 1 chr2A.!!$R1 610
9 TraesCS3A01G508400 chr4D 6069737 6070350 613 True 760 760 88.979 1 616 1 chr4D.!!$R1 615
10 TraesCS3A01G508400 chr4D 42273786 42274395 609 False 752 752 88.943 1 612 1 chr4D.!!$F1 611
11 TraesCS3A01G508400 chr7D 57699596 57700219 623 True 749 749 88.339 1 624 1 chr7D.!!$R1 623
12 TraesCS3A01G508400 chr5B 401002160 401002766 606 False 749 749 88.871 1 611 1 chr5B.!!$F1 610
13 TraesCS3A01G508400 chr1A 395429991 395430598 607 True 743 743 88.725 1 611 1 chr1A.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.419459 AGGAAGGATGTGGAGAGGGT 59.581 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1551 1.134946 GCTGCCAAATAATGCGGAAGT 59.865 47.619 0.0 0.0 35.88 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.328099 CCTCAGTGGGCAGCGTTTC 61.328 63.158 0.00 0.00 0.00 2.78
29 30 1.493311 GGCAGCGTTTCTGAAGACG 59.507 57.895 15.71 15.71 45.72 4.18
35 36 4.105486 CAGCGTTTCTGAAGACGATATCA 58.895 43.478 20.90 0.00 45.72 2.15
106 107 0.419459 AGGAAGGATGTGGAGAGGGT 59.581 55.000 0.00 0.00 0.00 4.34
123 124 3.571590 AGGGTATTTGGTGTGCTTCAAA 58.428 40.909 0.00 0.00 37.29 2.69
236 237 1.891933 TTGTGGAGGATATGAGGGCA 58.108 50.000 0.00 0.00 0.00 5.36
240 241 1.074405 TGGAGGATATGAGGGCAATGC 59.926 52.381 0.00 0.00 0.00 3.56
254 255 1.255882 CAATGCTGTAGCCCAAACCA 58.744 50.000 0.80 0.00 41.18 3.67
257 258 2.889170 TGCTGTAGCCCAAACCAATA 57.111 45.000 0.80 0.00 41.18 1.90
289 290 4.202151 GCACCTGGAGAACAAGTTGAAATT 60.202 41.667 10.54 0.00 0.00 1.82
299 300 6.265422 AGAACAAGTTGAAATTCCGGAAGATT 59.735 34.615 23.47 19.14 0.00 2.40
313 314 2.545946 GGAAGATTAAGATGCGGCTCAC 59.454 50.000 0.00 0.00 0.00 3.51
354 355 6.020520 CAGATGCATCAGAATATTCGAGATCG 60.021 42.308 27.81 15.11 41.45 3.69
533 534 3.787826 CTTGTATAATCGACGTGCATGC 58.212 45.455 11.82 11.82 0.00 4.06
544 545 3.546616 CGACGTGCATGCATTTGTATGAT 60.547 43.478 25.64 1.56 39.98 2.45
545 546 4.318689 CGACGTGCATGCATTTGTATGATA 60.319 41.667 25.64 0.00 39.98 2.15
578 579 4.037803 CGGATTTGAAATATGTGGATGCCA 59.962 41.667 0.00 0.00 0.00 4.92
582 583 4.248174 TGAAATATGTGGATGCCAGGAA 57.752 40.909 0.00 0.00 32.34 3.36
593 594 5.360714 GTGGATGCCAGGAAGAAAATATGAA 59.639 40.000 0.00 0.00 32.34 2.57
632 648 2.641559 GTCCGCCGACGTATAGGG 59.358 66.667 6.37 0.00 37.70 3.53
634 650 2.595463 CCGCCGACGTATAGGGGA 60.595 66.667 18.48 0.00 42.30 4.81
644 660 3.236896 ACGTATAGGGGATCGGATTTGT 58.763 45.455 0.00 0.00 0.00 2.83
649 665 1.025041 GGGGATCGGATTTGTCAAGC 58.975 55.000 0.00 0.00 0.00 4.01
652 668 1.408822 GGATCGGATTTGTCAAGCCCT 60.409 52.381 0.00 0.00 34.65 5.19
653 669 2.158813 GGATCGGATTTGTCAAGCCCTA 60.159 50.000 0.00 0.00 34.65 3.53
667 683 3.039252 AGCCCTACTGTAGATGCTCTT 57.961 47.619 19.52 5.39 31.09 2.85
668 684 2.697751 AGCCCTACTGTAGATGCTCTTG 59.302 50.000 19.52 2.48 31.09 3.02
741 757 1.335872 CCACCGTTTCATTGTCAAGCC 60.336 52.381 0.00 0.00 0.00 4.35
748 764 4.670992 CGTTTCATTGTCAAGCCTGATCAG 60.671 45.833 16.24 16.24 33.05 2.90
863 879 2.732763 TCATCAATCAAATCCCGCCAA 58.267 42.857 0.00 0.00 0.00 4.52
864 880 3.298619 TCATCAATCAAATCCCGCCAAT 58.701 40.909 0.00 0.00 0.00 3.16
865 881 3.318839 TCATCAATCAAATCCCGCCAATC 59.681 43.478 0.00 0.00 0.00 2.67
866 882 3.017048 TCAATCAAATCCCGCCAATCT 57.983 42.857 0.00 0.00 0.00 2.40
867 883 4.163441 TCAATCAAATCCCGCCAATCTA 57.837 40.909 0.00 0.00 0.00 1.98
868 884 4.728772 TCAATCAAATCCCGCCAATCTAT 58.271 39.130 0.00 0.00 0.00 1.98
869 885 4.761739 TCAATCAAATCCCGCCAATCTATC 59.238 41.667 0.00 0.00 0.00 2.08
870 886 4.647564 ATCAAATCCCGCCAATCTATCT 57.352 40.909 0.00 0.00 0.00 1.98
871 887 4.437682 TCAAATCCCGCCAATCTATCTT 57.562 40.909 0.00 0.00 0.00 2.40
874 890 5.299279 TCAAATCCCGCCAATCTATCTTTTC 59.701 40.000 0.00 0.00 0.00 2.29
1084 1103 4.906065 ATTCATGCGCAATGTAAGTGAT 57.094 36.364 17.11 0.00 37.56 3.06
1109 1128 5.697473 TGGATGACGAGACAGATCTTATC 57.303 43.478 0.00 0.00 34.34 1.75
1362 1423 1.689959 GCCAACTGCTCAATTTCACG 58.310 50.000 0.00 0.00 36.87 4.35
1489 1566 7.497595 AGATTACTGTGATTACTTCCGCATTA 58.502 34.615 0.00 0.00 0.00 1.90
1497 1574 4.630894 TTACTTCCGCATTATTTGGCAG 57.369 40.909 0.00 0.00 0.00 4.85
1522 1599 5.407407 TTTCTTTACAGTTTGGTTTGCCA 57.593 34.783 0.00 0.00 44.38 4.92
1533 1610 1.415659 TGGTTTGCCAAAACATGAGGG 59.584 47.619 3.23 0.00 46.30 4.30
1652 1742 7.340487 ACCATGAATTCCCTTCAGTATCTTTTC 59.660 37.037 2.27 0.00 46.71 2.29
1704 1794 5.373981 AGAACTAAACCGACTGACTAGTG 57.626 43.478 0.00 0.00 37.25 2.74
1714 1804 4.444591 CCGACTGACTAGTGTACCCTAGAT 60.445 50.000 17.95 3.76 38.24 1.98
1719 1809 6.386342 ACTGACTAGTGTACCCTAGATCTACA 59.614 42.308 17.95 9.04 38.24 2.74
1760 1876 9.203163 AGATTTACTAACCTACAACAGCTCTAT 57.797 33.333 0.00 0.00 0.00 1.98
1930 2046 3.077556 AATGGAGCCGGAGCGAGT 61.078 61.111 5.05 0.00 46.67 4.18
1945 2061 2.494073 AGCGAGTAGAGAAAAGGACCAG 59.506 50.000 0.00 0.00 0.00 4.00
2078 2204 1.180456 TAGGGTTCTCAACGTCGGCA 61.180 55.000 0.00 0.00 0.00 5.69
2229 2357 9.295825 TCTCATCTTTATTTGCTTCCTTGTTAA 57.704 29.630 0.00 0.00 0.00 2.01
2242 2370 7.710475 TGCTTCCTTGTTAATTTTTCTTCCTTG 59.290 33.333 0.00 0.00 0.00 3.61
2273 2401 4.874534 CGGGCAGCAATCAAACTG 57.125 55.556 0.00 0.00 36.96 3.16
2274 2402 1.959085 CGGGCAGCAATCAAACTGT 59.041 52.632 0.00 0.00 36.26 3.55
2275 2403 0.314935 CGGGCAGCAATCAAACTGTT 59.685 50.000 0.00 0.00 36.26 3.16
2276 2404 1.539388 CGGGCAGCAATCAAACTGTTA 59.461 47.619 0.00 0.00 36.26 2.41
2277 2405 2.414559 CGGGCAGCAATCAAACTGTTAG 60.415 50.000 0.00 0.00 36.26 2.34
2278 2406 2.819608 GGGCAGCAATCAAACTGTTAGA 59.180 45.455 0.00 0.00 36.26 2.10
2279 2407 3.366374 GGGCAGCAATCAAACTGTTAGAC 60.366 47.826 0.00 0.00 36.26 2.59
2280 2408 3.253188 GGCAGCAATCAAACTGTTAGACA 59.747 43.478 0.00 0.00 36.26 3.41
2281 2409 4.082571 GGCAGCAATCAAACTGTTAGACAT 60.083 41.667 0.00 0.00 36.26 3.06
2282 2410 4.855388 GCAGCAATCAAACTGTTAGACATG 59.145 41.667 0.00 0.00 36.26 3.21
2283 2411 5.563475 GCAGCAATCAAACTGTTAGACATGT 60.563 40.000 0.00 0.00 36.26 3.21
2284 2412 5.854866 CAGCAATCAAACTGTTAGACATGTG 59.145 40.000 1.15 0.00 0.00 3.21
2285 2413 5.532406 AGCAATCAAACTGTTAGACATGTGT 59.468 36.000 1.15 0.22 0.00 3.72
2286 2414 6.710295 AGCAATCAAACTGTTAGACATGTGTA 59.290 34.615 1.15 0.00 0.00 2.90
2287 2415 7.391554 AGCAATCAAACTGTTAGACATGTGTAT 59.608 33.333 1.15 0.00 0.00 2.29
2288 2416 8.664798 GCAATCAAACTGTTAGACATGTGTATA 58.335 33.333 1.15 0.00 0.00 1.47
2291 2419 8.196802 TCAAACTGTTAGACATGTGTATATGC 57.803 34.615 1.15 0.00 0.00 3.14
2292 2420 8.040727 TCAAACTGTTAGACATGTGTATATGCT 58.959 33.333 1.15 0.00 0.00 3.79
2293 2421 7.776933 AACTGTTAGACATGTGTATATGCTG 57.223 36.000 1.15 2.08 0.00 4.41
2294 2422 6.878317 ACTGTTAGACATGTGTATATGCTGT 58.122 36.000 1.15 2.66 0.00 4.40
2295 2423 8.007405 ACTGTTAGACATGTGTATATGCTGTA 57.993 34.615 1.15 0.00 0.00 2.74
2296 2424 8.474831 ACTGTTAGACATGTGTATATGCTGTAA 58.525 33.333 1.15 0.00 0.00 2.41
2297 2425 8.642908 TGTTAGACATGTGTATATGCTGTAAC 57.357 34.615 1.15 0.00 0.00 2.50
2298 2426 7.434013 TGTTAGACATGTGTATATGCTGTAACG 59.566 37.037 1.15 0.00 30.20 3.18
2299 2427 5.289595 AGACATGTGTATATGCTGTAACGG 58.710 41.667 1.15 0.00 0.00 4.44
2300 2428 4.377021 ACATGTGTATATGCTGTAACGGG 58.623 43.478 0.00 0.00 0.00 5.28
2301 2429 4.100344 ACATGTGTATATGCTGTAACGGGA 59.900 41.667 0.00 0.00 0.00 5.14
2302 2430 4.948341 TGTGTATATGCTGTAACGGGAT 57.052 40.909 0.00 0.00 0.00 3.85
2303 2431 5.284861 TGTGTATATGCTGTAACGGGATT 57.715 39.130 0.00 0.00 0.00 3.01
2304 2432 5.294356 TGTGTATATGCTGTAACGGGATTC 58.706 41.667 0.00 0.00 0.00 2.52
2305 2433 5.069914 TGTGTATATGCTGTAACGGGATTCT 59.930 40.000 0.00 0.00 0.00 2.40
2306 2434 5.989777 GTGTATATGCTGTAACGGGATTCTT 59.010 40.000 0.00 0.00 0.00 2.52
2307 2435 5.989168 TGTATATGCTGTAACGGGATTCTTG 59.011 40.000 0.00 0.00 0.00 3.02
2308 2436 2.851263 TGCTGTAACGGGATTCTTGT 57.149 45.000 0.00 0.00 0.00 3.16
2309 2437 3.134574 TGCTGTAACGGGATTCTTGTT 57.865 42.857 0.00 1.01 0.00 2.83
2310 2438 2.811431 TGCTGTAACGGGATTCTTGTTG 59.189 45.455 0.00 0.00 0.00 3.33
2311 2439 2.812011 GCTGTAACGGGATTCTTGTTGT 59.188 45.455 0.00 0.00 0.00 3.32
2312 2440 3.998341 GCTGTAACGGGATTCTTGTTGTA 59.002 43.478 0.00 0.00 0.00 2.41
2313 2441 4.453136 GCTGTAACGGGATTCTTGTTGTAA 59.547 41.667 0.00 0.00 0.00 2.41
2314 2442 5.616204 GCTGTAACGGGATTCTTGTTGTAAC 60.616 44.000 0.00 0.00 0.00 2.50
2315 2443 4.756135 TGTAACGGGATTCTTGTTGTAACC 59.244 41.667 0.00 0.00 0.00 2.85
2316 2444 3.782656 ACGGGATTCTTGTTGTAACCT 57.217 42.857 0.00 0.00 0.00 3.50
2317 2445 4.094830 ACGGGATTCTTGTTGTAACCTT 57.905 40.909 0.00 0.00 0.00 3.50
2318 2446 4.070009 ACGGGATTCTTGTTGTAACCTTC 58.930 43.478 0.00 0.00 0.00 3.46
2319 2447 3.439129 CGGGATTCTTGTTGTAACCTTCC 59.561 47.826 0.00 0.00 0.00 3.46
2320 2448 4.663334 GGGATTCTTGTTGTAACCTTCCT 58.337 43.478 0.00 0.00 0.00 3.36
2321 2449 4.459337 GGGATTCTTGTTGTAACCTTCCTG 59.541 45.833 0.00 0.00 0.00 3.86
2322 2450 5.070685 GGATTCTTGTTGTAACCTTCCTGT 58.929 41.667 0.00 0.00 0.00 4.00
2323 2451 6.235664 GGATTCTTGTTGTAACCTTCCTGTA 58.764 40.000 0.00 0.00 0.00 2.74
2324 2452 6.713450 GGATTCTTGTTGTAACCTTCCTGTAA 59.287 38.462 0.00 0.00 0.00 2.41
2325 2453 7.393515 GGATTCTTGTTGTAACCTTCCTGTAAT 59.606 37.037 0.00 0.00 0.00 1.89
2326 2454 8.706322 ATTCTTGTTGTAACCTTCCTGTAATT 57.294 30.769 0.00 0.00 0.00 1.40
2327 2455 9.802039 ATTCTTGTTGTAACCTTCCTGTAATTA 57.198 29.630 0.00 0.00 0.00 1.40
2328 2456 9.802039 TTCTTGTTGTAACCTTCCTGTAATTAT 57.198 29.630 0.00 0.00 0.00 1.28
2329 2457 9.226606 TCTTGTTGTAACCTTCCTGTAATTATG 57.773 33.333 0.00 0.00 0.00 1.90
2330 2458 7.931578 TGTTGTAACCTTCCTGTAATTATGG 57.068 36.000 0.00 0.00 0.00 2.74
2331 2459 7.691213 TGTTGTAACCTTCCTGTAATTATGGA 58.309 34.615 6.19 6.19 0.00 3.41
2332 2460 8.333235 TGTTGTAACCTTCCTGTAATTATGGAT 58.667 33.333 9.90 0.93 0.00 3.41
2333 2461 8.837389 GTTGTAACCTTCCTGTAATTATGGATC 58.163 37.037 9.90 0.00 0.00 3.36
2334 2462 7.214381 TGTAACCTTCCTGTAATTATGGATCG 58.786 38.462 9.90 6.79 0.00 3.69
2335 2463 4.642429 ACCTTCCTGTAATTATGGATCGC 58.358 43.478 9.90 0.00 0.00 4.58
2336 2464 4.102524 ACCTTCCTGTAATTATGGATCGCA 59.897 41.667 9.90 0.00 0.00 5.10
2337 2465 5.221925 ACCTTCCTGTAATTATGGATCGCAT 60.222 40.000 9.90 2.80 0.00 4.73
2338 2466 5.352569 CCTTCCTGTAATTATGGATCGCATC 59.647 44.000 9.90 0.00 0.00 3.91
2339 2467 5.482163 TCCTGTAATTATGGATCGCATCA 57.518 39.130 6.19 0.00 0.00 3.07
2340 2468 5.237815 TCCTGTAATTATGGATCGCATCAC 58.762 41.667 6.19 0.00 0.00 3.06
2341 2469 4.091945 CCTGTAATTATGGATCGCATCACG 59.908 45.833 0.59 0.00 45.62 4.35
2342 2470 3.431912 TGTAATTATGGATCGCATCACGC 59.568 43.478 0.59 0.00 43.23 5.34
2343 2471 1.442769 ATTATGGATCGCATCACGCC 58.557 50.000 0.59 0.00 43.23 5.68
2344 2472 0.105778 TTATGGATCGCATCACGCCA 59.894 50.000 0.59 0.00 43.23 5.69
2345 2473 0.319813 TATGGATCGCATCACGCCAG 60.320 55.000 0.59 0.00 43.23 4.85
2346 2474 2.031674 ATGGATCGCATCACGCCAGA 62.032 55.000 0.00 0.00 43.23 3.86
2347 2475 1.953138 GGATCGCATCACGCCAGAG 60.953 63.158 0.00 0.00 43.23 3.35
2348 2476 2.587194 ATCGCATCACGCCAGAGC 60.587 61.111 0.00 0.00 43.23 4.09
2349 2477 4.819761 TCGCATCACGCCAGAGCC 62.820 66.667 0.00 0.00 43.23 4.70
2350 2478 4.827087 CGCATCACGCCAGAGCCT 62.827 66.667 0.00 0.00 37.30 4.58
2351 2479 3.200593 GCATCACGCCAGAGCCTG 61.201 66.667 0.00 0.00 34.57 4.85
2352 2480 3.200593 CATCACGCCAGAGCCTGC 61.201 66.667 0.00 0.00 34.57 4.85
2353 2481 4.827087 ATCACGCCAGAGCCTGCG 62.827 66.667 1.96 1.96 37.17 5.18
2360 2488 4.694233 CAGAGCCTGCGTGCCTGT 62.694 66.667 7.26 0.00 0.00 4.00
2361 2489 3.946201 AGAGCCTGCGTGCCTGTT 61.946 61.111 0.00 0.00 0.00 3.16
2362 2490 2.980233 GAGCCTGCGTGCCTGTTT 60.980 61.111 0.00 0.00 0.00 2.83
2363 2491 2.519302 AGCCTGCGTGCCTGTTTT 60.519 55.556 0.00 0.00 0.00 2.43
2364 2492 2.355009 GCCTGCGTGCCTGTTTTG 60.355 61.111 0.00 0.00 0.00 2.44
2365 2493 3.119193 CCTGCGTGCCTGTTTTGT 58.881 55.556 0.00 0.00 0.00 2.83
2366 2494 1.791103 GCCTGCGTGCCTGTTTTGTA 61.791 55.000 0.00 0.00 0.00 2.41
2367 2495 0.238289 CCTGCGTGCCTGTTTTGTAG 59.762 55.000 0.00 0.00 0.00 2.74
2368 2496 0.238289 CTGCGTGCCTGTTTTGTAGG 59.762 55.000 0.00 0.00 38.39 3.18
2369 2497 1.169661 TGCGTGCCTGTTTTGTAGGG 61.170 55.000 0.00 0.00 35.80 3.53
2370 2498 1.579429 CGTGCCTGTTTTGTAGGGC 59.421 57.895 0.00 0.00 44.31 5.19
2371 2499 1.579429 GTGCCTGTTTTGTAGGGCG 59.421 57.895 0.00 0.00 46.72 6.13
2372 2500 1.149627 TGCCTGTTTTGTAGGGCGT 59.850 52.632 0.00 0.00 46.72 5.68
2373 2501 1.169661 TGCCTGTTTTGTAGGGCGTG 61.170 55.000 0.00 0.00 46.72 5.34
2374 2502 0.887387 GCCTGTTTTGTAGGGCGTGA 60.887 55.000 0.00 0.00 35.80 4.35
2375 2503 1.156736 CCTGTTTTGTAGGGCGTGAG 58.843 55.000 0.00 0.00 0.00 3.51
2376 2504 1.542547 CCTGTTTTGTAGGGCGTGAGT 60.543 52.381 0.00 0.00 0.00 3.41
2377 2505 1.531149 CTGTTTTGTAGGGCGTGAGTG 59.469 52.381 0.00 0.00 0.00 3.51
2378 2506 0.237498 GTTTTGTAGGGCGTGAGTGC 59.763 55.000 0.00 0.00 0.00 4.40
2379 2507 0.107831 TTTTGTAGGGCGTGAGTGCT 59.892 50.000 0.00 0.00 34.52 4.40
2380 2508 0.320421 TTTGTAGGGCGTGAGTGCTC 60.320 55.000 0.00 0.00 34.79 4.26
2381 2509 2.167398 TTGTAGGGCGTGAGTGCTCC 62.167 60.000 0.00 0.00 35.32 4.70
2382 2510 2.037367 TAGGGCGTGAGTGCTCCT 59.963 61.111 0.00 0.00 35.32 3.69
2383 2511 2.052690 TAGGGCGTGAGTGCTCCTC 61.053 63.158 0.00 0.00 40.89 3.71
2384 2512 2.500815 TAGGGCGTGAGTGCTCCTCT 62.501 60.000 5.72 0.00 41.11 3.69
2385 2513 2.183046 GGCGTGAGTGCTCCTCTC 59.817 66.667 5.72 1.91 41.11 3.20
2386 2514 2.183046 GCGTGAGTGCTCCTCTCC 59.817 66.667 5.72 0.00 41.11 3.71
2387 2515 2.640302 GCGTGAGTGCTCCTCTCCA 61.640 63.158 5.72 0.00 41.11 3.86
2388 2516 1.954362 GCGTGAGTGCTCCTCTCCAT 61.954 60.000 5.72 0.00 41.11 3.41
2389 2517 0.179116 CGTGAGTGCTCCTCTCCATG 60.179 60.000 5.72 0.00 41.11 3.66
2390 2518 0.901124 GTGAGTGCTCCTCTCCATGT 59.099 55.000 5.72 0.00 41.11 3.21
2391 2519 2.103373 GTGAGTGCTCCTCTCCATGTA 58.897 52.381 5.72 0.00 41.11 2.29
2392 2520 2.697751 GTGAGTGCTCCTCTCCATGTAT 59.302 50.000 5.72 0.00 41.11 2.29
2393 2521 3.891977 GTGAGTGCTCCTCTCCATGTATA 59.108 47.826 5.72 0.00 41.11 1.47
2394 2522 4.342378 GTGAGTGCTCCTCTCCATGTATAA 59.658 45.833 5.72 0.00 41.11 0.98
2395 2523 4.962362 TGAGTGCTCCTCTCCATGTATAAA 59.038 41.667 5.72 0.00 41.11 1.40
2396 2524 5.604231 TGAGTGCTCCTCTCCATGTATAAAT 59.396 40.000 5.72 0.00 41.11 1.40
2397 2525 5.862845 AGTGCTCCTCTCCATGTATAAATG 58.137 41.667 0.00 0.00 0.00 2.32
2398 2526 9.313835 TGAGTGCTCCTCTCCATGTATAAATGG 62.314 44.444 15.10 15.10 41.98 3.16
2399 2527 4.660303 TGCTCCTCTCCATGTATAAATGGT 59.340 41.667 19.62 0.00 46.24 3.55
2400 2528 4.999950 GCTCCTCTCCATGTATAAATGGTG 59.000 45.833 19.62 17.38 46.24 4.17
2401 2529 4.973168 TCCTCTCCATGTATAAATGGTGC 58.027 43.478 19.62 0.00 46.24 5.01
2402 2530 4.411869 TCCTCTCCATGTATAAATGGTGCA 59.588 41.667 19.62 8.30 46.24 4.57
2403 2531 4.516698 CCTCTCCATGTATAAATGGTGCAC 59.483 45.833 19.62 8.80 46.24 4.57
2404 2532 5.371526 CTCTCCATGTATAAATGGTGCACT 58.628 41.667 19.62 0.00 46.24 4.40
2405 2533 5.368145 TCTCCATGTATAAATGGTGCACTC 58.632 41.667 19.62 7.60 46.24 3.51
2406 2534 5.130975 TCTCCATGTATAAATGGTGCACTCT 59.869 40.000 19.62 0.85 46.24 3.24
2407 2535 5.125356 TCCATGTATAAATGGTGCACTCTG 58.875 41.667 19.62 0.00 46.24 3.35
2408 2536 4.883585 CCATGTATAAATGGTGCACTCTGT 59.116 41.667 17.98 1.87 41.98 3.41
2409 2537 6.054941 CCATGTATAAATGGTGCACTCTGTA 58.945 40.000 17.98 4.23 41.98 2.74
2410 2538 6.542005 CCATGTATAAATGGTGCACTCTGTAA 59.458 38.462 17.98 0.00 41.98 2.41
2411 2539 6.978343 TGTATAAATGGTGCACTCTGTAAC 57.022 37.500 17.98 8.07 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.920227 GCGGCTCTGATATCGTCTTCAG 60.920 54.545 0.00 5.33 40.58 3.02
52 53 1.024271 TGTTGCAAAGTGGCTCTGTC 58.976 50.000 0.00 0.00 34.04 3.51
78 79 1.412710 CACATCCTTCCTAGCCGCTTA 59.587 52.381 0.00 0.00 0.00 3.09
106 107 3.880490 ACGAGTTTGAAGCACACCAAATA 59.120 39.130 0.00 0.00 35.14 1.40
123 124 1.604604 CACACAATTCCCCAACGAGT 58.395 50.000 0.00 0.00 0.00 4.18
221 222 1.353694 AGCATTGCCCTCATATCCTCC 59.646 52.381 4.70 0.00 0.00 4.30
228 229 0.466922 GGCTACAGCATTGCCCTCAT 60.467 55.000 4.70 0.00 42.87 2.90
229 230 1.077501 GGCTACAGCATTGCCCTCA 60.078 57.895 4.70 0.00 42.87 3.86
236 237 2.008242 TTGGTTTGGGCTACAGCATT 57.992 45.000 3.24 0.00 44.36 3.56
240 241 6.696411 TCAAAATTATTGGTTTGGGCTACAG 58.304 36.000 0.00 0.00 35.79 2.74
254 255 6.267471 TGTTCTCCAGGTGCTTCAAAATTATT 59.733 34.615 0.00 0.00 0.00 1.40
257 258 3.960102 TGTTCTCCAGGTGCTTCAAAATT 59.040 39.130 0.00 0.00 0.00 1.82
289 290 1.540363 GCCGCATCTTAATCTTCCGGA 60.540 52.381 0.00 0.00 36.55 5.14
299 300 1.123077 ATCAGGTGAGCCGCATCTTA 58.877 50.000 0.00 0.00 35.17 2.10
313 314 3.181499 GCATCTGCAGAAAGTTCATCAGG 60.181 47.826 22.50 0.00 41.59 3.86
344 345 1.227380 GCACCTGCCGATCTCGAAT 60.227 57.895 0.22 0.00 43.02 3.34
354 355 0.320073 TAGTTACGTGTGCACCTGCC 60.320 55.000 15.69 0.00 41.18 4.85
533 534 7.154656 TCCGGACTCTCAATATCATACAAATG 58.845 38.462 0.00 0.00 0.00 2.32
544 545 8.210946 ACATATTTCAAATCCGGACTCTCAATA 58.789 33.333 6.12 7.96 0.00 1.90
545 546 7.012704 CACATATTTCAAATCCGGACTCTCAAT 59.987 37.037 6.12 5.76 0.00 2.57
578 579 3.053619 ACGGGCCTTCATATTTTCTTCCT 60.054 43.478 0.84 0.00 0.00 3.36
582 583 2.745152 CGGACGGGCCTTCATATTTTCT 60.745 50.000 12.54 0.00 0.00 2.52
621 637 1.747709 ATCCGATCCCCTATACGTCG 58.252 55.000 0.00 0.00 0.00 5.12
624 640 3.257375 TGACAAATCCGATCCCCTATACG 59.743 47.826 0.00 0.00 0.00 3.06
632 648 1.025041 GGGCTTGACAAATCCGATCC 58.975 55.000 0.00 0.00 0.00 3.36
634 650 2.505819 AGTAGGGCTTGACAAATCCGAT 59.494 45.455 0.00 0.00 0.00 4.18
644 660 2.695666 GAGCATCTACAGTAGGGCTTGA 59.304 50.000 21.44 0.00 37.11 3.02
667 683 5.781210 TGAAACAAATATTGGCTGTGACA 57.219 34.783 0.00 0.00 34.12 3.58
668 684 6.215845 AGTTGAAACAAATATTGGCTGTGAC 58.784 36.000 0.00 0.00 34.12 3.67
741 757 2.830104 TCGTGATGGCATTCTGATCAG 58.170 47.619 17.07 17.07 0.00 2.90
748 764 4.751600 TGTGATTAGATCGTGATGGCATTC 59.248 41.667 0.00 0.00 0.00 2.67
909 927 7.151308 TGTGTTTTGACTTCTGAATGTTTTGT 58.849 30.769 0.00 0.00 0.00 2.83
1084 1103 7.667635 AGATAAGATCTGTCTCGTCATCCATTA 59.332 37.037 0.00 0.00 38.44 1.90
1109 1128 6.346120 CGGATATTGAAGCACACGAGAATAAG 60.346 42.308 0.00 0.00 0.00 1.73
1362 1423 1.282930 GGAGACGGTTGCAGACGAAC 61.283 60.000 17.30 10.95 0.00 3.95
1476 1549 3.181491 GCTGCCAAATAATGCGGAAGTAA 60.181 43.478 0.00 0.00 35.88 2.24
1478 1551 1.134946 GCTGCCAAATAATGCGGAAGT 59.865 47.619 0.00 0.00 35.88 3.01
1479 1552 1.406539 AGCTGCCAAATAATGCGGAAG 59.593 47.619 0.00 0.00 35.88 3.46
1480 1553 1.473258 AGCTGCCAAATAATGCGGAA 58.527 45.000 0.00 0.00 35.88 4.30
1481 1554 1.473258 AAGCTGCCAAATAATGCGGA 58.527 45.000 0.00 0.00 35.88 5.54
1482 1555 2.298411 AAAGCTGCCAAATAATGCGG 57.702 45.000 0.00 0.00 36.92 5.69
1489 1566 5.535753 ACTGTAAAGAAAAGCTGCCAAAT 57.464 34.783 0.00 0.00 0.00 2.32
1497 1574 5.220586 GGCAAACCAAACTGTAAAGAAAAGC 60.221 40.000 0.00 0.00 35.26 3.51
1522 1599 2.827921 GGCTGTTGATCCCTCATGTTTT 59.172 45.455 0.00 0.00 0.00 2.43
1533 1610 3.208594 TGTAGCATGATGGCTGTTGATC 58.791 45.455 0.00 0.00 45.44 2.92
1628 1718 8.284945 TGAAAAGATACTGAAGGGAATTCATG 57.715 34.615 7.93 0.00 46.71 3.07
1642 1732 8.711457 CAAATTTTGCCGAATTGAAAAGATACT 58.289 29.630 0.00 0.00 30.06 2.12
1652 1742 6.225703 TGATTGACAAATTTTGCCGAATTG 57.774 33.333 9.04 0.00 30.06 2.32
1856 1972 1.460699 GGTCCTGGGCCTTGTCTTT 59.539 57.895 10.89 0.00 0.00 2.52
1930 2046 2.567615 GTCCTGCTGGTCCTTTTCTCTA 59.432 50.000 9.73 0.00 34.23 2.43
2229 2357 9.546428 CATCCAAAACTAACAAGGAAGAAAAAT 57.454 29.630 0.00 0.00 31.17 1.82
2242 2370 0.885196 TGCCCGCATCCAAAACTAAC 59.115 50.000 0.00 0.00 0.00 2.34
2272 2400 7.434013 CGTTACAGCATATACACATGTCTAACA 59.566 37.037 0.00 0.00 0.00 2.41
2273 2401 7.096189 CCGTTACAGCATATACACATGTCTAAC 60.096 40.741 0.00 0.00 0.00 2.34
2274 2402 6.921307 CCGTTACAGCATATACACATGTCTAA 59.079 38.462 0.00 0.00 0.00 2.10
2275 2403 6.443792 CCGTTACAGCATATACACATGTCTA 58.556 40.000 0.00 0.00 0.00 2.59
2276 2404 5.289595 CCGTTACAGCATATACACATGTCT 58.710 41.667 0.00 0.00 0.00 3.41
2277 2405 4.447724 CCCGTTACAGCATATACACATGTC 59.552 45.833 0.00 0.00 0.00 3.06
2278 2406 4.100344 TCCCGTTACAGCATATACACATGT 59.900 41.667 0.00 0.00 0.00 3.21
2279 2407 4.627058 TCCCGTTACAGCATATACACATG 58.373 43.478 0.00 0.00 0.00 3.21
2280 2408 4.948341 TCCCGTTACAGCATATACACAT 57.052 40.909 0.00 0.00 0.00 3.21
2281 2409 4.948341 ATCCCGTTACAGCATATACACA 57.052 40.909 0.00 0.00 0.00 3.72
2282 2410 5.539048 AGAATCCCGTTACAGCATATACAC 58.461 41.667 0.00 0.00 0.00 2.90
2283 2411 5.801531 AGAATCCCGTTACAGCATATACA 57.198 39.130 0.00 0.00 0.00 2.29
2284 2412 5.989777 ACAAGAATCCCGTTACAGCATATAC 59.010 40.000 0.00 0.00 0.00 1.47
2285 2413 6.169557 ACAAGAATCCCGTTACAGCATATA 57.830 37.500 0.00 0.00 0.00 0.86
2286 2414 5.036117 ACAAGAATCCCGTTACAGCATAT 57.964 39.130 0.00 0.00 0.00 1.78
2287 2415 4.481368 ACAAGAATCCCGTTACAGCATA 57.519 40.909 0.00 0.00 0.00 3.14
2288 2416 3.350219 ACAAGAATCCCGTTACAGCAT 57.650 42.857 0.00 0.00 0.00 3.79
2289 2417 2.811431 CAACAAGAATCCCGTTACAGCA 59.189 45.455 0.00 0.00 0.00 4.41
2290 2418 2.812011 ACAACAAGAATCCCGTTACAGC 59.188 45.455 0.00 0.00 0.00 4.40
2291 2419 5.106830 GGTTACAACAAGAATCCCGTTACAG 60.107 44.000 0.00 0.00 0.00 2.74
2292 2420 4.756135 GGTTACAACAAGAATCCCGTTACA 59.244 41.667 0.00 0.00 0.00 2.41
2293 2421 4.999311 AGGTTACAACAAGAATCCCGTTAC 59.001 41.667 0.00 0.00 0.00 2.50
2294 2422 5.231702 AGGTTACAACAAGAATCCCGTTA 57.768 39.130 0.00 0.00 0.00 3.18
2295 2423 4.094830 AGGTTACAACAAGAATCCCGTT 57.905 40.909 0.00 0.00 0.00 4.44
2296 2424 3.782656 AGGTTACAACAAGAATCCCGT 57.217 42.857 0.00 0.00 0.00 5.28
2297 2425 3.439129 GGAAGGTTACAACAAGAATCCCG 59.561 47.826 0.00 0.00 0.00 5.14
2298 2426 4.459337 CAGGAAGGTTACAACAAGAATCCC 59.541 45.833 0.00 0.00 0.00 3.85
2299 2427 5.070685 ACAGGAAGGTTACAACAAGAATCC 58.929 41.667 0.00 0.00 0.00 3.01
2300 2428 7.739498 TTACAGGAAGGTTACAACAAGAATC 57.261 36.000 0.00 0.00 0.00 2.52
2301 2429 8.706322 AATTACAGGAAGGTTACAACAAGAAT 57.294 30.769 0.00 0.00 0.00 2.40
2302 2430 9.802039 ATAATTACAGGAAGGTTACAACAAGAA 57.198 29.630 0.00 0.00 0.00 2.52
2303 2431 9.226606 CATAATTACAGGAAGGTTACAACAAGA 57.773 33.333 0.00 0.00 0.00 3.02
2304 2432 8.458843 CCATAATTACAGGAAGGTTACAACAAG 58.541 37.037 0.43 0.00 0.00 3.16
2305 2433 8.164733 TCCATAATTACAGGAAGGTTACAACAA 58.835 33.333 6.11 0.00 0.00 2.83
2306 2434 7.691213 TCCATAATTACAGGAAGGTTACAACA 58.309 34.615 6.11 0.00 0.00 3.33
2307 2435 8.747538 ATCCATAATTACAGGAAGGTTACAAC 57.252 34.615 11.37 0.00 34.62 3.32
2308 2436 7.713507 CGATCCATAATTACAGGAAGGTTACAA 59.286 37.037 11.37 0.00 34.62 2.41
2309 2437 7.214381 CGATCCATAATTACAGGAAGGTTACA 58.786 38.462 11.37 0.00 34.62 2.41
2310 2438 6.147328 GCGATCCATAATTACAGGAAGGTTAC 59.853 42.308 11.37 1.89 34.62 2.50
2311 2439 6.183361 TGCGATCCATAATTACAGGAAGGTTA 60.183 38.462 11.37 0.00 34.62 2.85
2312 2440 5.063880 GCGATCCATAATTACAGGAAGGTT 58.936 41.667 11.37 0.00 34.62 3.50
2313 2441 4.102524 TGCGATCCATAATTACAGGAAGGT 59.897 41.667 11.37 0.00 34.62 3.50
2314 2442 4.641396 TGCGATCCATAATTACAGGAAGG 58.359 43.478 11.37 8.16 34.62 3.46
2315 2443 5.934043 TGATGCGATCCATAATTACAGGAAG 59.066 40.000 11.37 9.92 34.62 3.46
2316 2444 5.700832 GTGATGCGATCCATAATTACAGGAA 59.299 40.000 11.37 0.00 34.62 3.36
2317 2445 5.237815 GTGATGCGATCCATAATTACAGGA 58.762 41.667 10.09 10.09 33.29 3.86
2318 2446 4.091945 CGTGATGCGATCCATAATTACAGG 59.908 45.833 0.00 0.00 44.77 4.00
2319 2447 4.434725 GCGTGATGCGATCCATAATTACAG 60.435 45.833 0.00 0.00 44.77 2.74
2320 2448 3.431912 GCGTGATGCGATCCATAATTACA 59.568 43.478 0.00 0.00 44.77 2.41
2321 2449 3.991069 GCGTGATGCGATCCATAATTAC 58.009 45.455 0.00 0.00 44.77 1.89
2347 2475 1.791103 TACAAAACAGGCACGCAGGC 61.791 55.000 0.00 0.00 44.61 4.85
2348 2476 0.238289 CTACAAAACAGGCACGCAGG 59.762 55.000 0.00 0.00 0.00 4.85
2349 2477 0.238289 CCTACAAAACAGGCACGCAG 59.762 55.000 0.00 0.00 0.00 5.18
2350 2478 1.169661 CCCTACAAAACAGGCACGCA 61.170 55.000 0.00 0.00 0.00 5.24
2351 2479 1.579429 CCCTACAAAACAGGCACGC 59.421 57.895 0.00 0.00 0.00 5.34
2352 2480 1.579429 GCCCTACAAAACAGGCACG 59.421 57.895 0.00 0.00 45.07 5.34
2353 2481 1.170290 ACGCCCTACAAAACAGGCAC 61.170 55.000 0.30 0.00 46.08 5.01
2354 2482 1.149627 ACGCCCTACAAAACAGGCA 59.850 52.632 0.30 0.00 46.08 4.75
2355 2483 0.887387 TCACGCCCTACAAAACAGGC 60.887 55.000 0.00 0.00 42.18 4.85
2356 2484 1.156736 CTCACGCCCTACAAAACAGG 58.843 55.000 0.00 0.00 0.00 4.00
2357 2485 1.531149 CACTCACGCCCTACAAAACAG 59.469 52.381 0.00 0.00 0.00 3.16
2358 2486 1.588674 CACTCACGCCCTACAAAACA 58.411 50.000 0.00 0.00 0.00 2.83
2359 2487 0.237498 GCACTCACGCCCTACAAAAC 59.763 55.000 0.00 0.00 0.00 2.43
2360 2488 0.107831 AGCACTCACGCCCTACAAAA 59.892 50.000 0.00 0.00 0.00 2.44
2361 2489 0.320421 GAGCACTCACGCCCTACAAA 60.320 55.000 0.00 0.00 0.00 2.83
2362 2490 1.292223 GAGCACTCACGCCCTACAA 59.708 57.895 0.00 0.00 0.00 2.41
2363 2491 2.646175 GGAGCACTCACGCCCTACA 61.646 63.158 0.00 0.00 0.00 2.74
2364 2492 2.184579 GGAGCACTCACGCCCTAC 59.815 66.667 0.00 0.00 0.00 3.18
2365 2493 2.037367 AGGAGCACTCACGCCCTA 59.963 61.111 0.00 0.00 32.73 3.53
2366 2494 3.386237 GAGGAGCACTCACGCCCT 61.386 66.667 0.00 0.00 45.85 5.19
2372 2500 9.313835 CCATTTATACATGGAGAGGAGCACTCA 62.314 44.444 11.88 0.00 46.18 3.41
2373 2501 5.537300 TTTATACATGGAGAGGAGCACTC 57.463 43.478 0.00 0.53 46.98 3.51
2374 2502 5.221803 CCATTTATACATGGAGAGGAGCACT 60.222 44.000 11.88 0.00 46.18 4.40
2375 2503 4.999950 CCATTTATACATGGAGAGGAGCAC 59.000 45.833 11.88 0.00 46.18 4.40
2376 2504 4.660303 ACCATTTATACATGGAGAGGAGCA 59.340 41.667 22.13 0.00 46.18 4.26
2377 2505 4.999950 CACCATTTATACATGGAGAGGAGC 59.000 45.833 22.13 0.00 46.18 4.70
2378 2506 4.999950 GCACCATTTATACATGGAGAGGAG 59.000 45.833 22.13 7.54 46.18 3.69
2379 2507 4.411869 TGCACCATTTATACATGGAGAGGA 59.588 41.667 22.13 11.00 46.18 3.71
2380 2508 4.516698 GTGCACCATTTATACATGGAGAGG 59.483 45.833 22.13 10.65 46.18 3.69
2381 2509 5.371526 AGTGCACCATTTATACATGGAGAG 58.628 41.667 22.13 12.94 46.18 3.20
2382 2510 5.130975 AGAGTGCACCATTTATACATGGAGA 59.869 40.000 22.13 4.93 46.18 3.71
2383 2511 5.237996 CAGAGTGCACCATTTATACATGGAG 59.762 44.000 22.13 15.96 46.18 3.86
2384 2512 5.125356 CAGAGTGCACCATTTATACATGGA 58.875 41.667 22.13 0.00 46.18 3.41
2386 2514 7.409697 GTTACAGAGTGCACCATTTATACATG 58.590 38.462 14.63 0.00 0.00 3.21
2387 2515 7.553881 GTTACAGAGTGCACCATTTATACAT 57.446 36.000 14.63 0.00 0.00 2.29
2388 2516 6.978343 GTTACAGAGTGCACCATTTATACA 57.022 37.500 14.63 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.