Multiple sequence alignment - TraesCS3A01G507400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G507400 chr3A 100.000 3194 0 0 1 3194 728459182 728455989 0.000000e+00 5899.0
1 TraesCS3A01G507400 chr3A 85.843 1222 157 14 996 2208 728384618 728385832 0.000000e+00 1284.0
2 TraesCS3A01G507400 chr3A 84.372 1203 176 5 996 2198 729690656 729691846 0.000000e+00 1170.0
3 TraesCS3A01G507400 chr3A 84.268 1195 176 5 1004 2198 728018602 728017420 0.000000e+00 1155.0
4 TraesCS3A01G507400 chr3A 84.050 1210 177 11 996 2203 728056583 728057778 0.000000e+00 1151.0
5 TraesCS3A01G507400 chr3A 84.883 1065 158 1 1134 2198 728033572 728032511 0.000000e+00 1072.0
6 TraesCS3A01G507400 chr3A 85.676 370 37 2 2303 2672 728416343 728415990 3.010000e-100 375.0
7 TraesCS3A01G507400 chr3A 95.082 122 4 2 245 365 584013279 584013159 1.170000e-44 191.0
8 TraesCS3A01G507400 chr3B 93.560 1677 92 6 996 2672 805425853 805424193 0.000000e+00 2484.0
9 TraesCS3A01G507400 chr3B 85.173 1214 164 11 996 2207 805004656 805003457 0.000000e+00 1230.0
10 TraesCS3A01G507400 chr3B 93.684 665 38 4 2127 2790 805400292 805399631 0.000000e+00 992.0
11 TraesCS3A01G507400 chr3B 87.105 411 27 10 2580 2980 805417449 805417055 2.920000e-120 442.0
12 TraesCS3A01G507400 chr3B 87.105 411 27 10 2580 2980 805419907 805419513 2.920000e-120 442.0
13 TraesCS3A01G507400 chr3B 87.105 411 27 10 2580 2980 805422365 805421971 2.920000e-120 442.0
14 TraesCS3A01G507400 chr3B 86.501 363 34 5 2745 3106 805399628 805399280 5.000000e-103 385.0
15 TraesCS3A01G507400 chr3B 92.857 182 11 2 63 244 805429562 805429383 2.440000e-66 263.0
16 TraesCS3A01G507400 chr3B 87.879 165 14 1 3036 3194 805416704 805416540 4.210000e-44 189.0
17 TraesCS3A01G507400 chr3B 80.702 228 15 15 589 800 805426270 805426056 1.980000e-32 150.0
18 TraesCS3A01G507400 chr3B 90.000 90 4 4 364 453 805429329 805429245 9.370000e-21 111.0
19 TraesCS3A01G507400 chr3B 89.655 58 6 0 2494 2551 805403181 805403124 1.230000e-09 75.0
20 TraesCS3A01G507400 chr3D 85.287 1203 165 5 996 2198 598049230 598048040 0.000000e+00 1230.0
21 TraesCS3A01G507400 chr3D 85.061 1225 164 14 996 2216 598060884 598062093 0.000000e+00 1230.0
22 TraesCS3A01G507400 chr3D 85.135 370 35 4 2303 2672 598303026 598302677 8.420000e-96 361.0
23 TraesCS3A01G507400 chr3D 89.655 87 5 3 3049 3131 520166551 520166465 1.210000e-19 108.0
24 TraesCS3A01G507400 chr7A 94.488 127 5 2 245 370 293097161 293097036 9.040000e-46 195.0
25 TraesCS3A01G507400 chr7A 95.833 120 3 2 247 365 647115221 647115339 3.250000e-45 193.0
26 TraesCS3A01G507400 chr7A 95.082 122 4 2 247 367 699150397 699150517 1.170000e-44 191.0
27 TraesCS3A01G507400 chr7D 95.082 122 4 2 245 365 141639575 141639695 1.170000e-44 191.0
28 TraesCS3A01G507400 chr6A 95.082 122 4 2 245 365 224280485 224280605 1.170000e-44 191.0
29 TraesCS3A01G507400 chr6A 94.400 125 5 2 247 370 408339203 408339326 1.170000e-44 191.0
30 TraesCS3A01G507400 chr4A 95.082 122 4 2 245 365 512047585 512047465 1.170000e-44 191.0
31 TraesCS3A01G507400 chr4A 93.130 131 6 3 245 373 538887745 538887616 4.210000e-44 189.0
32 TraesCS3A01G507400 chr1D 77.551 147 28 5 97 241 122855545 122855402 2.040000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G507400 chr3A 728455989 728459182 3193 True 5899.000 5899 100.000000 1 3194 1 chr3A.!!$R5 3193
1 TraesCS3A01G507400 chr3A 728384618 728385832 1214 False 1284.000 1284 85.843000 996 2208 1 chr3A.!!$F2 1212
2 TraesCS3A01G507400 chr3A 729690656 729691846 1190 False 1170.000 1170 84.372000 996 2198 1 chr3A.!!$F3 1202
3 TraesCS3A01G507400 chr3A 728017420 728018602 1182 True 1155.000 1155 84.268000 1004 2198 1 chr3A.!!$R2 1194
4 TraesCS3A01G507400 chr3A 728056583 728057778 1195 False 1151.000 1151 84.050000 996 2203 1 chr3A.!!$F1 1207
5 TraesCS3A01G507400 chr3A 728032511 728033572 1061 True 1072.000 1072 84.883000 1134 2198 1 chr3A.!!$R3 1064
6 TraesCS3A01G507400 chr3B 805003457 805004656 1199 True 1230.000 1230 85.173000 996 2207 1 chr3B.!!$R1 1211
7 TraesCS3A01G507400 chr3B 805416540 805429562 13022 True 565.375 2484 88.289125 63 3194 8 chr3B.!!$R3 3131
8 TraesCS3A01G507400 chr3B 805399280 805403181 3901 True 484.000 992 89.946667 2127 3106 3 chr3B.!!$R2 979
9 TraesCS3A01G507400 chr3D 598048040 598049230 1190 True 1230.000 1230 85.287000 996 2198 1 chr3D.!!$R2 1202
10 TraesCS3A01G507400 chr3D 598060884 598062093 1209 False 1230.000 1230 85.061000 996 2216 1 chr3D.!!$F1 1220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 3700 0.094730 GACAAACGACAGCGCATACC 59.905 55.0 11.47 0.00 42.48 2.73 F
1494 4401 0.250038 ATGTCATCGGCAAGATCCCG 60.250 55.0 2.76 2.76 46.88 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 4926 1.098129 TGATCTCCTCGAGCTCCGTG 61.098 60.000 6.99 4.55 39.75 4.94 R
3131 13780 1.130561 GGCAGCGAGAATTACAACCAC 59.869 52.381 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.107491 TGTGTTGACGATTTGATCTTTCTCG 60.107 40.000 0.00 0.37 35.56 4.04
28 29 4.188247 TGACGATTTGATCTTTCTCGGT 57.812 40.909 0.00 0.00 33.82 4.69
29 30 3.926527 TGACGATTTGATCTTTCTCGGTG 59.073 43.478 0.00 0.00 33.82 4.94
30 31 2.673368 ACGATTTGATCTTTCTCGGTGC 59.327 45.455 0.00 0.00 33.82 5.01
31 32 2.030946 CGATTTGATCTTTCTCGGTGCC 59.969 50.000 0.00 0.00 0.00 5.01
32 33 1.821216 TTTGATCTTTCTCGGTGCCC 58.179 50.000 0.00 0.00 0.00 5.36
33 34 0.984230 TTGATCTTTCTCGGTGCCCT 59.016 50.000 0.00 0.00 0.00 5.19
34 35 0.984230 TGATCTTTCTCGGTGCCCTT 59.016 50.000 0.00 0.00 0.00 3.95
35 36 1.351017 TGATCTTTCTCGGTGCCCTTT 59.649 47.619 0.00 0.00 0.00 3.11
36 37 1.740025 GATCTTTCTCGGTGCCCTTTG 59.260 52.381 0.00 0.00 0.00 2.77
37 38 0.472471 TCTTTCTCGGTGCCCTTTGT 59.528 50.000 0.00 0.00 0.00 2.83
38 39 1.133915 TCTTTCTCGGTGCCCTTTGTT 60.134 47.619 0.00 0.00 0.00 2.83
39 40 1.681264 CTTTCTCGGTGCCCTTTGTTT 59.319 47.619 0.00 0.00 0.00 2.83
41 42 2.871096 TCTCGGTGCCCTTTGTTTAT 57.129 45.000 0.00 0.00 0.00 1.40
44 45 3.262405 TCTCGGTGCCCTTTGTTTATAGT 59.738 43.478 0.00 0.00 0.00 2.12
45 46 4.007659 CTCGGTGCCCTTTGTTTATAGTT 58.992 43.478 0.00 0.00 0.00 2.24
46 47 3.754323 TCGGTGCCCTTTGTTTATAGTTG 59.246 43.478 0.00 0.00 0.00 3.16
47 48 3.504520 CGGTGCCCTTTGTTTATAGTTGT 59.495 43.478 0.00 0.00 0.00 3.32
48 49 4.022676 CGGTGCCCTTTGTTTATAGTTGTT 60.023 41.667 0.00 0.00 0.00 2.83
49 50 5.227152 GGTGCCCTTTGTTTATAGTTGTTG 58.773 41.667 0.00 0.00 0.00 3.33
50 51 5.227152 GTGCCCTTTGTTTATAGTTGTTGG 58.773 41.667 0.00 0.00 0.00 3.77
51 52 4.242475 GCCCTTTGTTTATAGTTGTTGGC 58.758 43.478 0.00 0.00 0.00 4.52
54 55 6.156519 CCCTTTGTTTATAGTTGTTGGCTTC 58.843 40.000 0.00 0.00 0.00 3.86
55 56 6.156519 CCTTTGTTTATAGTTGTTGGCTTCC 58.843 40.000 0.00 0.00 0.00 3.46
57 58 6.569179 TTGTTTATAGTTGTTGGCTTCCTC 57.431 37.500 0.00 0.00 0.00 3.71
59 60 5.222048 TGTTTATAGTTGTTGGCTTCCTCCT 60.222 40.000 0.00 0.00 0.00 3.69
61 62 2.755952 AGTTGTTGGCTTCCTCCTTT 57.244 45.000 0.00 0.00 0.00 3.11
62 63 3.876309 AGTTGTTGGCTTCCTCCTTTA 57.124 42.857 0.00 0.00 0.00 1.85
63 64 3.756117 AGTTGTTGGCTTCCTCCTTTAG 58.244 45.455 0.00 0.00 0.00 1.85
64 65 3.138468 AGTTGTTGGCTTCCTCCTTTAGT 59.862 43.478 0.00 0.00 0.00 2.24
65 66 3.140325 TGTTGGCTTCCTCCTTTAGTG 57.860 47.619 0.00 0.00 0.00 2.74
66 67 2.224769 TGTTGGCTTCCTCCTTTAGTGG 60.225 50.000 0.00 0.00 0.00 4.00
67 68 0.991920 TGGCTTCCTCCTTTAGTGGG 59.008 55.000 0.00 0.00 0.00 4.61
94 95 4.260579 GCAAGTGCAAAACAACCATAAACC 60.261 41.667 0.00 0.00 41.59 3.27
109 110 5.616986 ACCATAAACCTCCAATGGATAGGAT 59.383 40.000 13.78 0.00 42.36 3.24
128 129 9.723601 GATAGGATTTCTAGCTTCATTCAGATT 57.276 33.333 0.00 0.00 32.00 2.40
132 133 7.281774 GGATTTCTAGCTTCATTCAGATTCACA 59.718 37.037 0.00 0.00 0.00 3.58
148 149 8.038351 TCAGATTCACACGGTATCATCTAAAAA 58.962 33.333 0.00 0.00 0.00 1.94
244 245 1.212751 GTGGAGCGAACATTTGGCC 59.787 57.895 0.00 0.00 34.67 5.36
245 246 1.228398 TGGAGCGAACATTTGGCCA 60.228 52.632 0.00 0.00 34.67 5.36
246 247 0.825425 TGGAGCGAACATTTGGCCAA 60.825 50.000 16.05 16.05 34.67 4.52
247 248 0.316841 GGAGCGAACATTTGGCCAAA 59.683 50.000 32.12 32.12 34.67 3.28
250 251 3.179048 GAGCGAACATTTGGCCAAATAC 58.821 45.455 36.92 28.12 38.84 1.89
251 252 1.917303 GCGAACATTTGGCCAAATACG 59.083 47.619 36.92 35.31 38.84 3.06
252 253 2.414824 GCGAACATTTGGCCAAATACGA 60.415 45.455 38.17 22.60 38.84 3.43
254 255 4.420168 CGAACATTTGGCCAAATACGAAT 58.580 39.130 36.92 22.86 38.84 3.34
255 256 4.862018 CGAACATTTGGCCAAATACGAATT 59.138 37.500 36.92 25.62 38.84 2.17
256 257 5.004345 CGAACATTTGGCCAAATACGAATTC 59.996 40.000 36.92 29.18 38.84 2.17
258 259 5.976458 ACATTTGGCCAAATACGAATTCAT 58.024 33.333 36.92 14.77 38.84 2.57
259 260 6.405538 ACATTTGGCCAAATACGAATTCATT 58.594 32.000 36.92 14.26 38.84 2.57
261 262 5.651387 TTGGCCAAATACGAATTCATTGA 57.349 34.783 17.98 0.00 0.00 2.57
262 263 5.850557 TGGCCAAATACGAATTCATTGAT 57.149 34.783 0.61 0.00 0.00 2.57
264 265 7.523293 TGGCCAAATACGAATTCATTGATAT 57.477 32.000 0.61 0.00 0.00 1.63
265 266 8.628630 TGGCCAAATACGAATTCATTGATATA 57.371 30.769 0.61 0.00 0.00 0.86
266 267 9.072375 TGGCCAAATACGAATTCATTGATATAA 57.928 29.630 0.61 0.00 0.00 0.98
280 281 6.315144 TCATTGATATAATTATTGTCCCGCCG 59.685 38.462 2.68 0.00 0.00 6.46
284 285 1.398692 AATTATTGTCCCGCCGCAAT 58.601 45.000 0.00 0.00 38.63 3.56
285 286 0.951558 ATTATTGTCCCGCCGCAATC 59.048 50.000 0.00 0.00 36.75 2.67
287 288 0.813610 TATTGTCCCGCCGCAATCAG 60.814 55.000 0.00 0.00 36.75 2.90
288 289 2.819984 ATTGTCCCGCCGCAATCAGT 62.820 55.000 0.00 0.00 30.33 3.41
292 293 2.753966 CCCGCCGCAATCAGTCTTG 61.754 63.158 0.00 0.00 0.00 3.02
295 296 1.570813 CGCCGCAATCAGTCTTGATA 58.429 50.000 0.00 0.00 43.20 2.15
297 298 2.555199 GCCGCAATCAGTCTTGATAGT 58.445 47.619 0.00 0.00 43.20 2.12
298 299 2.939103 GCCGCAATCAGTCTTGATAGTT 59.061 45.455 0.00 0.00 43.20 2.24
300 301 4.570772 GCCGCAATCAGTCTTGATAGTTAA 59.429 41.667 0.00 0.00 43.20 2.01
301 302 5.064707 GCCGCAATCAGTCTTGATAGTTAAA 59.935 40.000 0.00 0.00 43.20 1.52
302 303 6.403200 GCCGCAATCAGTCTTGATAGTTAAAA 60.403 38.462 0.00 0.00 43.20 1.52
303 304 7.679638 GCCGCAATCAGTCTTGATAGTTAAAAT 60.680 37.037 0.00 0.00 43.20 1.82
304 305 8.184192 CCGCAATCAGTCTTGATAGTTAAAATT 58.816 33.333 0.00 0.00 43.20 1.82
305 306 9.559958 CGCAATCAGTCTTGATAGTTAAAATTT 57.440 29.630 0.00 0.00 43.20 1.82
310 311 9.715121 TCAGTCTTGATAGTTAAAATTTACGGT 57.285 29.630 0.00 0.00 0.00 4.83
311 312 9.968743 CAGTCTTGATAGTTAAAATTTACGGTC 57.031 33.333 0.00 0.00 0.00 4.79
312 313 9.715121 AGTCTTGATAGTTAAAATTTACGGTCA 57.285 29.630 0.00 0.00 0.00 4.02
321 322 9.511144 AGTTAAAATTTACGGTCAAAGTTGAAG 57.489 29.630 0.00 0.00 39.21 3.02
322 323 6.822073 AAAATTTACGGTCAAAGTTGAAGC 57.178 33.333 0.00 0.00 39.21 3.86
323 324 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
324 325 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
325 326 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
326 327 0.655733 CGGTCAAAGTTGAAGCACGT 59.344 50.000 0.00 0.00 39.21 4.49
327 328 1.594518 CGGTCAAAGTTGAAGCACGTG 60.595 52.381 12.28 12.28 39.21 4.49
328 329 1.268539 GGTCAAAGTTGAAGCACGTGG 60.269 52.381 18.88 0.00 39.21 4.94
329 330 1.668751 GTCAAAGTTGAAGCACGTGGA 59.331 47.619 18.88 0.00 39.21 4.02
331 332 3.496884 GTCAAAGTTGAAGCACGTGGATA 59.503 43.478 18.88 0.00 39.21 2.59
333 334 3.678056 AAGTTGAAGCACGTGGATAGA 57.322 42.857 18.88 0.00 0.00 1.98
335 336 2.093973 AGTTGAAGCACGTGGATAGAGG 60.094 50.000 18.88 0.00 0.00 3.69
336 337 1.847328 TGAAGCACGTGGATAGAGGA 58.153 50.000 18.88 0.00 0.00 3.71
337 338 2.176045 TGAAGCACGTGGATAGAGGAA 58.824 47.619 18.88 0.00 0.00 3.36
338 339 2.166459 TGAAGCACGTGGATAGAGGAAG 59.834 50.000 18.88 0.00 0.00 3.46
340 341 0.175760 GCACGTGGATAGAGGAAGCA 59.824 55.000 18.88 0.00 0.00 3.91
341 342 1.927895 CACGTGGATAGAGGAAGCAC 58.072 55.000 7.95 0.00 0.00 4.40
342 343 1.478510 CACGTGGATAGAGGAAGCACT 59.521 52.381 7.95 0.00 0.00 4.40
344 345 2.688958 ACGTGGATAGAGGAAGCACTAC 59.311 50.000 0.00 0.00 0.00 2.73
345 346 2.688446 CGTGGATAGAGGAAGCACTACA 59.312 50.000 0.00 0.00 0.00 2.74
346 347 3.319405 CGTGGATAGAGGAAGCACTACAT 59.681 47.826 0.00 0.00 0.00 2.29
347 348 4.202161 CGTGGATAGAGGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
348 349 5.053145 GTGGATAGAGGAAGCACTACATTG 58.947 45.833 0.00 0.00 0.00 2.82
350 351 5.053145 GGATAGAGGAAGCACTACATTGTG 58.947 45.833 0.00 0.00 40.62 3.33
351 352 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
352 353 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
353 354 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
354 355 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
356 357 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
361 362 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
362 363 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
421 422 9.929722 TGTCGAATAAAATAACTATGTGAATGC 57.070 29.630 0.00 0.00 0.00 3.56
424 425 9.385902 CGAATAAAATAACTATGTGAATGCAGG 57.614 33.333 0.00 0.00 0.00 4.85
476 510 6.164876 TGTAAATGAAATGTTGCAGGGAATG 58.835 36.000 0.00 0.00 0.00 2.67
496 530 1.667236 CGCAGCATGTTATGGAGGAA 58.333 50.000 0.00 0.00 39.31 3.36
497 531 1.600957 CGCAGCATGTTATGGAGGAAG 59.399 52.381 0.00 0.00 39.31 3.46
499 533 3.019564 GCAGCATGTTATGGAGGAAGTT 58.980 45.455 0.00 0.00 39.31 2.66
500 534 3.181493 GCAGCATGTTATGGAGGAAGTTG 60.181 47.826 0.00 0.00 39.31 3.16
501 535 3.019564 AGCATGTTATGGAGGAAGTTGC 58.980 45.455 0.00 0.00 0.00 4.17
503 537 3.181493 GCATGTTATGGAGGAAGTTGCAG 60.181 47.826 0.00 0.00 0.00 4.41
504 538 3.071874 TGTTATGGAGGAAGTTGCAGG 57.928 47.619 0.00 0.00 0.00 4.85
507 541 0.622665 ATGGAGGAAGTTGCAGGGAG 59.377 55.000 0.00 0.00 0.00 4.30
510 544 0.398318 GAGGAAGTTGCAGGGAGTGT 59.602 55.000 0.00 0.00 0.00 3.55
518 552 2.419057 GCAGGGAGTGTGCAACTTT 58.581 52.632 0.00 0.00 40.07 2.66
519 553 1.604604 GCAGGGAGTGTGCAACTTTA 58.395 50.000 0.00 0.00 40.07 1.85
520 554 1.266989 GCAGGGAGTGTGCAACTTTAC 59.733 52.381 0.00 0.00 40.07 2.01
521 555 2.571212 CAGGGAGTGTGCAACTTTACA 58.429 47.619 0.00 0.00 40.07 2.41
537 3065 8.539674 GCAACTTTACACAACTTTCTTTTATGG 58.460 33.333 0.00 0.00 0.00 2.74
539 3067 7.777095 ACTTTACACAACTTTCTTTTATGGCA 58.223 30.769 0.00 0.00 0.00 4.92
540 3068 8.254508 ACTTTACACAACTTTCTTTTATGGCAA 58.745 29.630 0.00 0.00 0.00 4.52
545 3073 9.260002 ACACAACTTTCTTTTATGGCAATTTAG 57.740 29.630 0.00 0.00 0.00 1.85
546 3074 9.260002 CACAACTTTCTTTTATGGCAATTTAGT 57.740 29.630 0.00 0.00 0.00 2.24
547 3075 9.830975 ACAACTTTCTTTTATGGCAATTTAGTT 57.169 25.926 0.00 0.00 0.00 2.24
558 3086 6.814076 TGGCAATTTAGTTGTAAAAACACG 57.186 33.333 0.00 0.00 40.07 4.49
559 3087 6.331061 TGGCAATTTAGTTGTAAAAACACGT 58.669 32.000 0.00 0.00 40.07 4.49
560 3088 6.253727 TGGCAATTTAGTTGTAAAAACACGTG 59.746 34.615 15.48 15.48 40.07 4.49
561 3089 6.253942 GGCAATTTAGTTGTAAAAACACGTGT 59.746 34.615 17.22 17.22 40.07 4.49
563 3091 8.796278 GCAATTTAGTTGTAAAAACACGTGTTA 58.204 29.630 32.47 16.01 40.07 2.41
568 3096 6.316319 AGTTGTAAAAACACGTGTTACTTGG 58.684 36.000 32.47 0.00 37.25 3.61
569 3097 5.876612 TGTAAAAACACGTGTTACTTGGT 57.123 34.783 32.47 14.49 37.25 3.67
570 3098 5.629097 TGTAAAAACACGTGTTACTTGGTG 58.371 37.500 32.47 0.00 37.25 4.17
571 3099 4.769859 AAAAACACGTGTTACTTGGTGT 57.230 36.364 32.47 12.98 44.85 4.16
572 3100 4.345271 AAAACACGTGTTACTTGGTGTC 57.655 40.909 32.47 0.00 42.35 3.67
573 3101 2.676632 ACACGTGTTACTTGGTGTCA 57.323 45.000 17.22 0.00 39.23 3.58
574 3102 2.273557 ACACGTGTTACTTGGTGTCAC 58.726 47.619 17.22 0.00 39.23 3.67
575 3103 2.272678 CACGTGTTACTTGGTGTCACA 58.727 47.619 7.58 0.00 31.12 3.58
576 3104 2.029970 CACGTGTTACTTGGTGTCACAC 59.970 50.000 7.58 0.00 45.37 3.82
581 3109 3.936453 TGTTACTTGGTGTCACACTTGTC 59.064 43.478 8.12 0.00 34.40 3.18
582 3110 2.779755 ACTTGGTGTCACACTTGTCA 57.220 45.000 8.12 0.00 34.40 3.58
585 3113 4.016444 ACTTGGTGTCACACTTGTCAATT 58.984 39.130 8.12 0.00 34.40 2.32
586 3114 4.142403 ACTTGGTGTCACACTTGTCAATTG 60.142 41.667 8.12 0.00 34.40 2.32
587 3115 2.687425 TGGTGTCACACTTGTCAATTGG 59.313 45.455 8.12 0.00 34.40 3.16
612 3452 7.229907 GGATTATATATTTTGTGGGGAACGTGT 59.770 37.037 0.00 0.00 0.00 4.49
615 3455 5.890424 ATATTTTGTGGGGAACGTGTTAG 57.110 39.130 0.00 0.00 0.00 2.34
616 3456 2.713863 TTTGTGGGGAACGTGTTAGT 57.286 45.000 0.00 0.00 0.00 2.24
618 3458 1.121378 TGTGGGGAACGTGTTAGTGA 58.879 50.000 0.00 0.00 0.00 3.41
619 3459 1.069513 TGTGGGGAACGTGTTAGTGAG 59.930 52.381 0.00 0.00 0.00 3.51
620 3460 1.342174 GTGGGGAACGTGTTAGTGAGA 59.658 52.381 0.00 0.00 0.00 3.27
651 3491 1.205179 GGAGAAAGAAGAGACGGGACC 59.795 57.143 0.00 0.00 0.00 4.46
657 3497 2.430382 GAAGAGACGGGACCGCACAA 62.430 60.000 11.21 0.00 44.19 3.33
669 3509 3.419759 GCACAACGGCCGGTGTAG 61.420 66.667 45.52 36.24 45.28 2.74
685 3534 3.308688 GGTGTAGGGTAGGTCTACAGACA 60.309 52.174 11.31 7.42 45.06 3.41
687 3536 4.398673 GTGTAGGGTAGGTCTACAGACAAG 59.601 50.000 11.31 0.00 45.06 3.16
688 3537 4.290459 TGTAGGGTAGGTCTACAGACAAGA 59.710 45.833 11.31 0.00 46.47 3.02
689 3538 3.699413 AGGGTAGGTCTACAGACAAGAC 58.301 50.000 11.31 5.59 46.47 3.01
690 3539 2.422832 GGGTAGGTCTACAGACAAGACG 59.577 54.545 11.31 0.00 46.47 4.18
691 3540 3.341823 GGTAGGTCTACAGACAAGACGA 58.658 50.000 11.31 0.00 46.47 4.20
692 3541 3.755378 GGTAGGTCTACAGACAAGACGAA 59.245 47.826 11.31 0.00 46.47 3.85
697 3546 2.095869 TCTACAGACAAGACGAAGACGC 60.096 50.000 0.00 0.00 43.96 5.19
698 3547 0.669077 ACAGACAAGACGAAGACGCT 59.331 50.000 0.00 0.00 43.96 5.07
719 3568 3.691342 CGGCTCCTGGACCGTCAA 61.691 66.667 21.82 0.00 44.46 3.18
720 3569 2.990479 GGCTCCTGGACCGTCAAT 59.010 61.111 0.00 0.00 0.00 2.57
721 3570 1.450312 GGCTCCTGGACCGTCAATG 60.450 63.158 0.00 0.00 0.00 2.82
722 3571 1.296715 GCTCCTGGACCGTCAATGT 59.703 57.895 0.00 0.00 0.00 2.71
723 3572 0.741221 GCTCCTGGACCGTCAATGTC 60.741 60.000 0.00 0.00 0.00 3.06
724 3573 0.608130 CTCCTGGACCGTCAATGTCA 59.392 55.000 0.00 0.00 34.36 3.58
789 3641 4.803426 CACCGTCCAGCGCTCCTC 62.803 72.222 7.13 0.00 39.71 3.71
792 3644 4.838486 CGTCCAGCGCTCCTCGAC 62.838 72.222 7.13 10.13 41.67 4.20
793 3645 3.749064 GTCCAGCGCTCCTCGACA 61.749 66.667 7.13 0.00 41.67 4.35
794 3646 3.749064 TCCAGCGCTCCTCGACAC 61.749 66.667 7.13 0.00 41.67 3.67
796 3648 4.103103 CAGCGCTCCTCGACACGA 62.103 66.667 7.13 0.00 41.67 4.35
797 3649 3.362797 AGCGCTCCTCGACACGAA 61.363 61.111 2.64 0.00 41.67 3.85
798 3650 3.173240 GCGCTCCTCGACACGAAC 61.173 66.667 0.00 0.00 41.67 3.95
799 3651 2.254350 CGCTCCTCGACACGAACA 59.746 61.111 0.00 0.00 41.67 3.18
800 3652 2.081212 CGCTCCTCGACACGAACAC 61.081 63.158 0.00 0.00 41.67 3.32
801 3653 2.081212 GCTCCTCGACACGAACACG 61.081 63.158 0.00 0.00 34.74 4.49
802 3654 1.281960 CTCCTCGACACGAACACGT 59.718 57.895 0.00 0.00 41.02 4.49
812 3664 2.743636 ACGAACACGTGGATCTGATT 57.256 45.000 21.57 2.37 38.85 2.57
813 3665 2.607187 ACGAACACGTGGATCTGATTC 58.393 47.619 21.57 11.26 38.85 2.52
814 3666 2.231478 ACGAACACGTGGATCTGATTCT 59.769 45.455 21.57 0.59 38.85 2.40
815 3667 2.600420 CGAACACGTGGATCTGATTCTG 59.400 50.000 21.57 5.59 0.00 3.02
816 3668 3.673323 CGAACACGTGGATCTGATTCTGA 60.673 47.826 21.57 0.00 0.00 3.27
818 3670 2.200067 CACGTGGATCTGATTCTGAGC 58.800 52.381 7.95 0.61 0.00 4.26
826 3678 4.460382 GGATCTGATTCTGAGCCAACAAAA 59.540 41.667 19.39 0.00 37.71 2.44
828 3680 6.350780 GGATCTGATTCTGAGCCAACAAAAAT 60.351 38.462 19.39 0.00 37.71 1.82
830 3682 5.535783 TCTGATTCTGAGCCAACAAAAATGA 59.464 36.000 0.00 0.00 0.00 2.57
842 3694 3.105203 ACAAAAATGACAAACGACAGCG 58.895 40.909 0.00 0.00 44.79 5.18
843 3695 1.753956 AAAATGACAAACGACAGCGC 58.246 45.000 0.00 0.00 42.48 5.92
844 3696 0.660488 AAATGACAAACGACAGCGCA 59.340 45.000 11.47 0.00 42.48 6.09
845 3697 0.874390 AATGACAAACGACAGCGCAT 59.126 45.000 11.47 0.00 42.48 4.73
846 3698 1.720805 ATGACAAACGACAGCGCATA 58.279 45.000 11.47 0.00 42.48 3.14
847 3699 0.787787 TGACAAACGACAGCGCATAC 59.212 50.000 11.47 0.00 42.48 2.39
848 3700 0.094730 GACAAACGACAGCGCATACC 59.905 55.000 11.47 0.00 42.48 2.73
849 3701 1.296056 ACAAACGACAGCGCATACCC 61.296 55.000 11.47 0.00 42.48 3.69
850 3702 1.743995 AAACGACAGCGCATACCCC 60.744 57.895 11.47 0.00 42.48 4.95
851 3703 2.457743 AAACGACAGCGCATACCCCA 62.458 55.000 11.47 0.00 42.48 4.96
852 3704 2.890474 CGACAGCGCATACCCCAC 60.890 66.667 11.47 0.00 0.00 4.61
853 3705 2.267642 GACAGCGCATACCCCACA 59.732 61.111 11.47 0.00 0.00 4.17
854 3706 2.046314 ACAGCGCATACCCCACAC 60.046 61.111 11.47 0.00 0.00 3.82
855 3707 2.046411 CAGCGCATACCCCACACA 60.046 61.111 11.47 0.00 0.00 3.72
856 3708 1.451927 CAGCGCATACCCCACACAT 60.452 57.895 11.47 0.00 0.00 3.21
857 3709 1.153168 AGCGCATACCCCACACATC 60.153 57.895 11.47 0.00 0.00 3.06
858 3710 2.186826 GCGCATACCCCACACATCC 61.187 63.158 0.30 0.00 0.00 3.51
859 3711 1.223211 CGCATACCCCACACATCCA 59.777 57.895 0.00 0.00 0.00 3.41
897 3749 3.568743 GCGCACACACACACGGAA 61.569 61.111 0.30 0.00 0.00 4.30
898 3750 2.625906 CGCACACACACACGGAAG 59.374 61.111 0.00 0.00 0.00 3.46
993 3879 4.183858 CCCGCGGCCAATCCCTAA 62.184 66.667 22.85 0.00 0.00 2.69
1149 4054 4.271816 CTCGACATCCTCCCGCGG 62.272 72.222 21.04 21.04 0.00 6.46
1401 4308 3.767230 CGCAACGTGCTCTCCGTG 61.767 66.667 8.07 0.00 42.25 4.94
1404 4311 1.594293 CAACGTGCTCTCCGTGGTT 60.594 57.895 0.00 0.00 38.77 3.67
1473 4380 2.048877 CACTACGTCGGCCCGTTT 60.049 61.111 12.38 0.00 42.00 3.60
1476 4383 1.153706 CTACGTCGGCCCGTTTGAT 60.154 57.895 12.38 0.00 42.00 2.57
1478 4385 2.157305 TACGTCGGCCCGTTTGATGT 62.157 55.000 12.38 9.67 42.00 3.06
1494 4401 0.250038 ATGTCATCGGCAAGATCCCG 60.250 55.000 2.76 2.76 46.88 5.14
1668 4578 4.799473 CGCAGCGCCATGAACGTG 62.799 66.667 2.29 0.00 0.00 4.49
1875 4785 2.622942 GGATGTGTTCAAGTGGAAGCAA 59.377 45.455 0.00 0.00 35.82 3.91
1885 4795 3.435186 GGAAGCAACTCTGGCCGC 61.435 66.667 0.00 0.00 0.00 6.53
1944 4854 2.593956 GGGAGAGGACAGCCGGTTT 61.594 63.158 1.90 0.00 39.96 3.27
1965 4875 4.923942 CTCGCGGATGCCATGGCT 62.924 66.667 35.53 21.86 42.51 4.75
1993 4903 3.001902 GCGGTGTGGACGGAGATCA 62.002 63.158 0.00 0.00 0.00 2.92
2016 4926 0.318762 AGGAGAACGAGCTTGTCACC 59.681 55.000 7.17 11.00 0.00 4.02
2062 4972 0.456653 GTGGTTTGTCGATGCCATGC 60.457 55.000 0.00 0.00 33.20 4.06
2151 5690 4.695455 CGTAACACCATCAACTCCTTCAAT 59.305 41.667 0.00 0.00 0.00 2.57
2345 5884 4.039603 AGCCAGAACCAAATAAAGCTCT 57.960 40.909 0.00 0.00 0.00 4.09
2451 5990 4.039488 TGTTCATTCTTGCAAGGCAGAAAT 59.961 37.500 25.73 14.54 40.61 2.17
2554 9818 2.928801 AGGCAACCATTTGTTTTCCC 57.071 45.000 0.00 0.00 34.00 3.97
2599 9864 1.838112 TGGAGGCAAACATGATGACC 58.162 50.000 0.00 4.43 0.00 4.02
2613 9878 3.819368 TGATGACCGATAACAATGGCAT 58.181 40.909 0.00 0.00 0.00 4.40
2626 9891 5.733620 ACAATGGCATCATGTCTTTTTCT 57.266 34.783 0.00 0.00 33.18 2.52
2654 10542 7.912250 CCAATTATTTCAAGGAAGTTGATCTCG 59.088 37.037 0.00 0.00 44.89 4.04
2709 10597 9.015577 CAATTTAAACGAACACTTTAGCTTTGA 57.984 29.630 0.00 0.00 0.00 2.69
2731 12333 7.439157 TGATATGGTAGCAAGATAACAATGC 57.561 36.000 0.00 0.00 40.34 3.56
2732 12334 6.997476 TGATATGGTAGCAAGATAACAATGCA 59.003 34.615 0.00 0.00 42.45 3.96
2733 12335 7.666804 TGATATGGTAGCAAGATAACAATGCAT 59.333 33.333 0.00 0.00 42.45 3.96
2734 12336 5.756195 TGGTAGCAAGATAACAATGCATC 57.244 39.130 0.00 0.00 42.45 3.91
2735 12337 5.192176 TGGTAGCAAGATAACAATGCATCA 58.808 37.500 0.00 0.00 42.45 3.07
2736 12338 5.829391 TGGTAGCAAGATAACAATGCATCAT 59.171 36.000 0.00 0.00 42.45 2.45
2737 12339 6.147581 GGTAGCAAGATAACAATGCATCATG 58.852 40.000 0.00 0.00 42.45 3.07
2738 12340 6.016860 GGTAGCAAGATAACAATGCATCATGA 60.017 38.462 0.00 0.00 42.45 3.07
2743 12345 8.241367 GCAAGATAACAATGCATCATGATCATA 58.759 33.333 8.15 0.00 39.81 2.15
2786 13131 5.379732 TGAAAATGATACGTTTTGGGTCC 57.620 39.130 0.00 0.00 0.00 4.46
2862 13207 2.957491 TGCTGTCTTTTGGGTTGTTG 57.043 45.000 0.00 0.00 0.00 3.33
2863 13208 1.134848 TGCTGTCTTTTGGGTTGTTGC 60.135 47.619 0.00 0.00 0.00 4.17
2922 13276 0.613572 TGTGCTAGTGGACCGGATGA 60.614 55.000 9.46 0.00 33.32 2.92
2943 13297 5.908341 TGACACGGAAACATGCAGTATATA 58.092 37.500 0.00 0.00 0.00 0.86
2988 13386 2.530177 AGATGACAAGATGTACACGCG 58.470 47.619 3.53 3.53 0.00 6.01
3093 13742 2.829120 ACACCTCTGCTCTTTAGGAGAC 59.171 50.000 0.00 0.00 44.42 3.36
3127 13776 2.751259 CCATGACCTTGATTGTGACCAG 59.249 50.000 0.00 0.00 0.00 4.00
3131 13780 2.932614 GACCTTGATTGTGACCAGATCG 59.067 50.000 0.00 0.00 0.00 3.69
3146 13801 3.551890 CCAGATCGTGGTTGTAATTCTCG 59.448 47.826 3.72 0.00 42.17 4.04
3151 13806 1.130561 GTGGTTGTAATTCTCGCTGCC 59.869 52.381 0.00 0.00 0.00 4.85
3163 13818 2.103094 TCTCGCTGCCAAATGCTACTAT 59.897 45.455 0.00 0.00 42.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.563939 CGAGAAAGATCAAATCGTCAACACAA 60.564 38.462 0.00 0.00 0.00 3.33
4 5 4.388773 CCGAGAAAGATCAAATCGTCAACA 59.611 41.667 0.00 0.00 0.00 3.33
5 6 4.389077 ACCGAGAAAGATCAAATCGTCAAC 59.611 41.667 0.00 0.00 0.00 3.18
6 7 4.388773 CACCGAGAAAGATCAAATCGTCAA 59.611 41.667 0.00 0.00 0.00 3.18
7 8 3.926527 CACCGAGAAAGATCAAATCGTCA 59.073 43.478 0.00 0.00 0.00 4.35
8 9 3.242123 GCACCGAGAAAGATCAAATCGTC 60.242 47.826 0.00 0.00 0.00 4.20
9 10 2.673368 GCACCGAGAAAGATCAAATCGT 59.327 45.455 0.00 0.00 0.00 3.73
10 11 2.030946 GGCACCGAGAAAGATCAAATCG 59.969 50.000 0.00 0.00 0.00 3.34
13 14 1.821216 GGGCACCGAGAAAGATCAAA 58.179 50.000 0.00 0.00 40.86 2.69
14 15 3.551259 GGGCACCGAGAAAGATCAA 57.449 52.632 0.00 0.00 40.86 2.57
28 29 4.262249 GCCAACAACTATAAACAAAGGGCA 60.262 41.667 0.00 0.00 36.57 5.36
29 30 4.021456 AGCCAACAACTATAAACAAAGGGC 60.021 41.667 0.00 0.00 36.81 5.19
30 31 5.722021 AGCCAACAACTATAAACAAAGGG 57.278 39.130 0.00 0.00 0.00 3.95
31 32 6.015434 AGGAAGCCAACAACTATAAACAAAGG 60.015 38.462 0.00 0.00 0.00 3.11
32 33 6.981722 AGGAAGCCAACAACTATAAACAAAG 58.018 36.000 0.00 0.00 0.00 2.77
33 34 6.015772 GGAGGAAGCCAACAACTATAAACAAA 60.016 38.462 0.00 0.00 0.00 2.83
34 35 5.475564 GGAGGAAGCCAACAACTATAAACAA 59.524 40.000 0.00 0.00 0.00 2.83
35 36 5.007682 GGAGGAAGCCAACAACTATAAACA 58.992 41.667 0.00 0.00 0.00 2.83
36 37 5.254115 AGGAGGAAGCCAACAACTATAAAC 58.746 41.667 0.00 0.00 0.00 2.01
37 38 5.514500 AGGAGGAAGCCAACAACTATAAA 57.486 39.130 0.00 0.00 0.00 1.40
38 39 5.514500 AAGGAGGAAGCCAACAACTATAA 57.486 39.130 0.00 0.00 0.00 0.98
39 40 5.514500 AAAGGAGGAAGCCAACAACTATA 57.486 39.130 0.00 0.00 0.00 1.31
41 42 3.876309 AAAGGAGGAAGCCAACAACTA 57.124 42.857 0.00 0.00 0.00 2.24
44 45 3.486383 CACTAAAGGAGGAAGCCAACAA 58.514 45.455 0.00 0.00 0.00 2.83
45 46 2.224769 CCACTAAAGGAGGAAGCCAACA 60.225 50.000 0.00 0.00 0.00 3.33
46 47 2.437413 CCACTAAAGGAGGAAGCCAAC 58.563 52.381 0.00 0.00 0.00 3.77
47 48 1.354368 CCCACTAAAGGAGGAAGCCAA 59.646 52.381 0.00 0.00 0.00 4.52
48 49 0.991920 CCCACTAAAGGAGGAAGCCA 59.008 55.000 0.00 0.00 0.00 4.75
49 50 0.256177 CCCCACTAAAGGAGGAAGCC 59.744 60.000 0.00 0.00 0.00 4.35
50 51 0.394488 GCCCCACTAAAGGAGGAAGC 60.394 60.000 0.00 0.00 0.00 3.86
51 52 1.065126 CAGCCCCACTAAAGGAGGAAG 60.065 57.143 0.00 0.00 0.00 3.46
54 55 1.077429 GCAGCCCCACTAAAGGAGG 60.077 63.158 0.00 0.00 0.00 4.30
55 56 0.038166 TTGCAGCCCCACTAAAGGAG 59.962 55.000 0.00 0.00 0.00 3.69
57 58 0.251341 ACTTGCAGCCCCACTAAAGG 60.251 55.000 0.00 0.00 0.00 3.11
59 60 1.178534 GCACTTGCAGCCCCACTAAA 61.179 55.000 0.00 0.00 41.59 1.85
61 62 2.034066 GCACTTGCAGCCCCACTA 59.966 61.111 0.00 0.00 41.59 2.74
94 95 6.371595 AGCTAGAAATCCTATCCATTGGAG 57.628 41.667 11.78 0.00 35.26 3.86
109 110 6.091305 CGTGTGAATCTGAATGAAGCTAGAAA 59.909 38.462 0.00 0.00 0.00 2.52
161 162 9.271828 CTTTGGAAGTTTTAGGTTATTTTGCAT 57.728 29.630 0.00 0.00 0.00 3.96
254 255 7.148323 CGGCGGGACAATAATTATATCAATGAA 60.148 37.037 0.00 0.00 0.00 2.57
255 256 6.315144 CGGCGGGACAATAATTATATCAATGA 59.685 38.462 0.00 0.00 0.00 2.57
256 257 6.486248 CGGCGGGACAATAATTATATCAATG 58.514 40.000 0.00 0.00 0.00 2.82
258 259 4.393680 GCGGCGGGACAATAATTATATCAA 59.606 41.667 9.78 0.00 0.00 2.57
259 260 3.936453 GCGGCGGGACAATAATTATATCA 59.064 43.478 9.78 0.00 0.00 2.15
261 262 3.945346 TGCGGCGGGACAATAATTATAT 58.055 40.909 9.78 0.00 0.00 0.86
262 263 3.404224 TGCGGCGGGACAATAATTATA 57.596 42.857 9.78 0.00 0.00 0.98
264 265 2.039818 TTGCGGCGGGACAATAATTA 57.960 45.000 9.78 0.00 0.00 1.40
265 266 1.336755 GATTGCGGCGGGACAATAATT 59.663 47.619 9.78 0.00 36.65 1.40
266 267 0.951558 GATTGCGGCGGGACAATAAT 59.048 50.000 9.78 0.00 36.65 1.28
267 268 0.393132 TGATTGCGGCGGGACAATAA 60.393 50.000 9.78 0.00 36.65 1.40
271 272 3.950794 GACTGATTGCGGCGGGACA 62.951 63.158 9.78 0.00 0.00 4.02
272 273 3.195698 GACTGATTGCGGCGGGAC 61.196 66.667 9.78 0.00 0.00 4.46
274 275 2.436646 AAGACTGATTGCGGCGGG 60.437 61.111 9.78 0.00 0.00 6.13
276 277 1.524355 CTATCAAGACTGATTGCGGCG 59.476 52.381 0.51 0.51 39.36 6.46
284 285 9.715121 ACCGTAAATTTTAACTATCAAGACTGA 57.285 29.630 0.00 0.00 35.56 3.41
285 286 9.968743 GACCGTAAATTTTAACTATCAAGACTG 57.031 33.333 0.00 0.00 0.00 3.51
295 296 9.511144 CTTCAACTTTGACCGTAAATTTTAACT 57.489 29.630 0.00 0.00 36.83 2.24
297 298 7.974501 TGCTTCAACTTTGACCGTAAATTTTAA 59.025 29.630 0.00 0.00 36.83 1.52
298 299 7.432838 GTGCTTCAACTTTGACCGTAAATTTTA 59.567 33.333 0.00 0.00 36.83 1.52
300 301 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
301 302 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
302 303 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
303 304 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
304 305 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
305 306 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
306 307 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
307 308 0.655733 ACGTGCTTCAACTTTGACCG 59.344 50.000 0.00 0.00 36.83 4.79
308 309 1.268539 CCACGTGCTTCAACTTTGACC 60.269 52.381 10.91 0.00 36.83 4.02
310 311 2.031258 TCCACGTGCTTCAACTTTGA 57.969 45.000 10.91 0.00 34.92 2.69
311 312 3.745975 TCTATCCACGTGCTTCAACTTTG 59.254 43.478 10.91 0.00 0.00 2.77
312 313 3.997021 CTCTATCCACGTGCTTCAACTTT 59.003 43.478 10.91 0.00 0.00 2.66
315 316 2.094182 TCCTCTATCCACGTGCTTCAAC 60.094 50.000 10.91 0.00 0.00 3.18
316 317 2.176045 TCCTCTATCCACGTGCTTCAA 58.824 47.619 10.91 0.00 0.00 2.69
317 318 1.847328 TCCTCTATCCACGTGCTTCA 58.153 50.000 10.91 0.00 0.00 3.02
318 319 2.815478 CTTCCTCTATCCACGTGCTTC 58.185 52.381 10.91 0.00 0.00 3.86
319 320 1.134670 GCTTCCTCTATCCACGTGCTT 60.135 52.381 10.91 1.47 0.00 3.91
320 321 0.461961 GCTTCCTCTATCCACGTGCT 59.538 55.000 10.91 1.67 0.00 4.40
321 322 0.175760 TGCTTCCTCTATCCACGTGC 59.824 55.000 10.91 0.00 0.00 5.34
322 323 1.478510 AGTGCTTCCTCTATCCACGTG 59.521 52.381 9.08 9.08 0.00 4.49
323 324 1.853963 AGTGCTTCCTCTATCCACGT 58.146 50.000 0.00 0.00 0.00 4.49
324 325 2.688446 TGTAGTGCTTCCTCTATCCACG 59.312 50.000 0.00 0.00 0.00 4.94
325 326 4.946478 ATGTAGTGCTTCCTCTATCCAC 57.054 45.455 0.00 0.00 0.00 4.02
326 327 4.716784 ACAATGTAGTGCTTCCTCTATCCA 59.283 41.667 0.00 0.00 0.00 3.41
327 328 5.053145 CACAATGTAGTGCTTCCTCTATCC 58.947 45.833 0.00 0.00 32.04 2.59
328 329 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
329 330 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
331 332 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
333 334 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
335 336 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
336 337 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
337 338 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
338 339 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
340 341 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
341 342 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
342 343 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
344 345 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
345 346 6.410853 CCTTTATACTCCCTCCATTCCACAAT 60.411 42.308 0.00 0.00 0.00 2.71
346 347 5.104109 CCTTTATACTCCCTCCATTCCACAA 60.104 44.000 0.00 0.00 0.00 3.33
347 348 4.412199 CCTTTATACTCCCTCCATTCCACA 59.588 45.833 0.00 0.00 0.00 4.17
348 349 4.747009 GCCTTTATACTCCCTCCATTCCAC 60.747 50.000 0.00 0.00 0.00 4.02
350 351 3.653352 AGCCTTTATACTCCCTCCATTCC 59.347 47.826 0.00 0.00 0.00 3.01
351 352 4.348168 TGAGCCTTTATACTCCCTCCATTC 59.652 45.833 0.00 0.00 31.65 2.67
352 353 4.307259 TGAGCCTTTATACTCCCTCCATT 58.693 43.478 0.00 0.00 31.65 3.16
353 354 3.941629 TGAGCCTTTATACTCCCTCCAT 58.058 45.455 0.00 0.00 31.65 3.41
354 355 3.414759 TGAGCCTTTATACTCCCTCCA 57.585 47.619 0.00 0.00 31.65 3.86
356 357 4.965200 ACATGAGCCTTTATACTCCCTC 57.035 45.455 0.00 0.00 31.65 4.30
358 359 4.593634 AGGTACATGAGCCTTTATACTCCC 59.406 45.833 0.00 0.00 31.65 4.30
359 360 5.810080 AGGTACATGAGCCTTTATACTCC 57.190 43.478 0.00 0.00 31.65 3.85
360 361 6.862090 CGTTAGGTACATGAGCCTTTATACTC 59.138 42.308 15.64 0.00 36.38 2.59
361 362 6.323225 ACGTTAGGTACATGAGCCTTTATACT 59.677 38.462 15.64 0.00 36.38 2.12
362 363 6.510536 ACGTTAGGTACATGAGCCTTTATAC 58.489 40.000 15.64 9.63 36.38 1.47
453 454 6.651755 CATTCCCTGCAACATTTCATTTAC 57.348 37.500 0.00 0.00 0.00 2.01
476 510 0.815213 TCCTCCATAACATGCTGCGC 60.815 55.000 0.00 0.00 0.00 6.09
477 511 1.600957 CTTCCTCCATAACATGCTGCG 59.399 52.381 0.00 0.00 0.00 5.18
479 513 3.181493 GCAACTTCCTCCATAACATGCTG 60.181 47.826 0.00 0.00 0.00 4.41
496 530 2.918248 TGCACACTCCCTGCAACT 59.082 55.556 0.00 0.00 41.70 3.16
499 533 0.395586 AAAGTTGCACACTCCCTGCA 60.396 50.000 0.00 0.00 42.95 4.41
500 534 1.266989 GTAAAGTTGCACACTCCCTGC 59.733 52.381 0.00 0.00 32.94 4.85
501 535 2.290641 GTGTAAAGTTGCACACTCCCTG 59.709 50.000 11.82 0.00 42.35 4.45
503 537 2.294074 TGTGTAAAGTTGCACACTCCC 58.706 47.619 17.33 0.00 46.36 4.30
510 544 9.081997 CATAAAAGAAAGTTGTGTAAAGTTGCA 57.918 29.630 0.00 0.00 0.00 4.08
513 547 8.254508 TGCCATAAAAGAAAGTTGTGTAAAGTT 58.745 29.630 0.00 0.00 0.00 2.66
516 550 9.606631 AATTGCCATAAAAGAAAGTTGTGTAAA 57.393 25.926 0.00 0.00 0.00 2.01
519 553 9.260002 CTAAATTGCCATAAAAGAAAGTTGTGT 57.740 29.630 0.00 0.00 0.00 3.72
520 554 9.260002 ACTAAATTGCCATAAAAGAAAGTTGTG 57.740 29.630 0.00 0.00 0.00 3.33
521 555 9.830975 AACTAAATTGCCATAAAAGAAAGTTGT 57.169 25.926 0.00 0.00 0.00 3.32
537 3065 7.212032 ACACGTGTTTTTACAACTAAATTGC 57.788 32.000 17.22 0.00 42.62 3.56
544 3072 6.072563 ACCAAGTAACACGTGTTTTTACAACT 60.073 34.615 36.26 27.74 39.31 3.16
545 3073 6.032670 CACCAAGTAACACGTGTTTTTACAAC 59.967 38.462 36.26 26.12 39.31 3.32
546 3074 6.084925 CACCAAGTAACACGTGTTTTTACAA 58.915 36.000 36.26 16.71 39.31 2.41
547 3075 5.180868 ACACCAAGTAACACGTGTTTTTACA 59.819 36.000 36.26 17.46 36.03 2.41
548 3076 5.630061 ACACCAAGTAACACGTGTTTTTAC 58.370 37.500 36.26 27.47 36.03 2.01
550 3078 4.215827 TGACACCAAGTAACACGTGTTTTT 59.784 37.500 36.26 26.52 39.47 1.94
553 3081 2.674357 GTGACACCAAGTAACACGTGTT 59.326 45.455 33.99 33.99 39.47 3.32
554 3082 2.273557 GTGACACCAAGTAACACGTGT 58.726 47.619 17.22 17.22 41.97 4.49
555 3083 2.272678 TGTGACACCAAGTAACACGTG 58.727 47.619 15.48 15.48 36.64 4.49
556 3084 2.676632 TGTGACACCAAGTAACACGT 57.323 45.000 2.45 0.00 36.64 4.49
559 3087 3.936453 GACAAGTGTGACACCAAGTAACA 59.064 43.478 12.81 0.00 39.36 2.41
560 3088 3.936453 TGACAAGTGTGACACCAAGTAAC 59.064 43.478 12.81 0.00 34.49 2.50
561 3089 4.209307 TGACAAGTGTGACACCAAGTAA 57.791 40.909 12.81 0.00 34.49 2.24
563 3091 2.779755 TGACAAGTGTGACACCAAGT 57.220 45.000 12.81 8.52 34.49 3.16
566 3094 2.687425 CCAATTGACAAGTGTGACACCA 59.313 45.455 12.81 0.00 34.49 4.17
568 3096 4.836125 ATCCAATTGACAAGTGTGACAC 57.164 40.909 14.03 7.83 34.10 3.67
569 3097 8.806429 ATATAATCCAATTGACAAGTGTGACA 57.194 30.769 14.03 4.51 0.00 3.58
585 3113 7.229707 CACGTTCCCCACAAAATATATAATCCA 59.770 37.037 0.00 0.00 0.00 3.41
586 3114 7.229907 ACACGTTCCCCACAAAATATATAATCC 59.770 37.037 0.00 0.00 0.00 3.01
587 3115 8.161699 ACACGTTCCCCACAAAATATATAATC 57.838 34.615 0.00 0.00 0.00 1.75
612 3452 3.089284 TCCGTTGCATCTCTCTCACTAA 58.911 45.455 0.00 0.00 0.00 2.24
615 3455 1.474478 TCTCCGTTGCATCTCTCTCAC 59.526 52.381 0.00 0.00 0.00 3.51
616 3456 1.839424 TCTCCGTTGCATCTCTCTCA 58.161 50.000 0.00 0.00 0.00 3.27
618 3458 2.828520 TCTTTCTCCGTTGCATCTCTCT 59.171 45.455 0.00 0.00 0.00 3.10
619 3459 3.238108 TCTTTCTCCGTTGCATCTCTC 57.762 47.619 0.00 0.00 0.00 3.20
620 3460 3.259374 TCTTCTTTCTCCGTTGCATCTCT 59.741 43.478 0.00 0.00 0.00 3.10
657 3497 2.757099 CTACCCTACACCGGCCGT 60.757 66.667 26.12 8.42 0.00 5.68
661 3501 1.064463 TGTAGACCTACCCTACACCGG 60.064 57.143 0.00 0.00 40.87 5.28
662 3502 2.092753 TCTGTAGACCTACCCTACACCG 60.093 54.545 4.88 0.00 40.87 4.94
664 3504 3.960571 TGTCTGTAGACCTACCCTACAC 58.039 50.000 9.37 0.00 44.15 2.90
669 3509 2.422832 CGTCTTGTCTGTAGACCTACCC 59.577 54.545 9.37 0.00 44.15 3.69
710 3559 0.953960 GGTGGTGACATTGACGGTCC 60.954 60.000 5.55 0.00 46.14 4.46
717 3566 3.061848 GGCCCGGTGGTGACATTG 61.062 66.667 0.00 0.00 46.14 2.82
718 3567 3.575247 TGGCCCGGTGGTGACATT 61.575 61.111 0.00 0.00 46.14 2.71
719 3568 4.344865 GTGGCCCGGTGGTGACAT 62.345 66.667 0.00 0.00 46.14 3.06
794 3646 2.600420 CAGAATCAGATCCACGTGTTCG 59.400 50.000 15.65 7.77 43.34 3.95
795 3647 3.849911 TCAGAATCAGATCCACGTGTTC 58.150 45.455 15.65 11.01 0.00 3.18
796 3648 3.854666 CTCAGAATCAGATCCACGTGTT 58.145 45.455 15.65 0.71 0.00 3.32
797 3649 2.417924 GCTCAGAATCAGATCCACGTGT 60.418 50.000 15.65 0.00 0.00 4.49
798 3650 2.200067 GCTCAGAATCAGATCCACGTG 58.800 52.381 9.08 9.08 0.00 4.49
799 3651 1.137872 GGCTCAGAATCAGATCCACGT 59.862 52.381 0.00 0.00 0.00 4.49
800 3652 1.137675 TGGCTCAGAATCAGATCCACG 59.862 52.381 0.00 0.00 0.00 4.94
801 3653 2.941720 GTTGGCTCAGAATCAGATCCAC 59.058 50.000 0.00 0.00 31.54 4.02
802 3654 2.573009 TGTTGGCTCAGAATCAGATCCA 59.427 45.455 0.00 0.00 30.00 3.41
803 3655 3.272574 TGTTGGCTCAGAATCAGATCC 57.727 47.619 0.00 0.00 0.00 3.36
804 3656 5.633830 TTTTGTTGGCTCAGAATCAGATC 57.366 39.130 0.00 0.00 0.00 2.75
805 3657 6.209986 TCATTTTTGTTGGCTCAGAATCAGAT 59.790 34.615 0.00 0.00 0.00 2.90
806 3658 5.535783 TCATTTTTGTTGGCTCAGAATCAGA 59.464 36.000 0.00 0.00 0.00 3.27
807 3659 5.632347 GTCATTTTTGTTGGCTCAGAATCAG 59.368 40.000 0.00 0.00 0.00 2.90
808 3660 5.068855 TGTCATTTTTGTTGGCTCAGAATCA 59.931 36.000 0.00 0.00 0.00 2.57
809 3661 5.531634 TGTCATTTTTGTTGGCTCAGAATC 58.468 37.500 0.00 0.00 0.00 2.52
810 3662 5.534207 TGTCATTTTTGTTGGCTCAGAAT 57.466 34.783 0.00 0.00 0.00 2.40
811 3663 4.998671 TGTCATTTTTGTTGGCTCAGAA 57.001 36.364 0.00 0.00 0.00 3.02
812 3664 4.998671 TTGTCATTTTTGTTGGCTCAGA 57.001 36.364 0.00 0.00 0.00 3.27
813 3665 4.026640 CGTTTGTCATTTTTGTTGGCTCAG 60.027 41.667 0.00 0.00 0.00 3.35
814 3666 3.862267 CGTTTGTCATTTTTGTTGGCTCA 59.138 39.130 0.00 0.00 0.00 4.26
815 3667 4.026886 GTCGTTTGTCATTTTTGTTGGCTC 60.027 41.667 0.00 0.00 0.00 4.70
816 3668 3.862845 GTCGTTTGTCATTTTTGTTGGCT 59.137 39.130 0.00 0.00 0.00 4.75
818 3670 4.259770 GCTGTCGTTTGTCATTTTTGTTGG 60.260 41.667 0.00 0.00 0.00 3.77
826 3678 0.874390 ATGCGCTGTCGTTTGTCATT 59.126 45.000 9.73 0.00 38.14 2.57
828 3680 0.787787 GTATGCGCTGTCGTTTGTCA 59.212 50.000 9.73 0.00 38.14 3.58
830 3682 1.296056 GGGTATGCGCTGTCGTTTGT 61.296 55.000 9.73 0.00 38.14 2.83
842 3694 0.751643 GGTGGATGTGTGGGGTATGC 60.752 60.000 0.00 0.00 0.00 3.14
843 3695 0.106719 GGGTGGATGTGTGGGGTATG 60.107 60.000 0.00 0.00 0.00 2.39
844 3696 0.551377 TGGGTGGATGTGTGGGGTAT 60.551 55.000 0.00 0.00 0.00 2.73
845 3697 1.151788 TGGGTGGATGTGTGGGGTA 60.152 57.895 0.00 0.00 0.00 3.69
846 3698 2.451493 TGGGTGGATGTGTGGGGT 60.451 61.111 0.00 0.00 0.00 4.95
847 3699 1.574526 ATCTGGGTGGATGTGTGGGG 61.575 60.000 0.00 0.00 0.00 4.96
848 3700 0.107017 GATCTGGGTGGATGTGTGGG 60.107 60.000 0.00 0.00 0.00 4.61
849 3701 0.462581 CGATCTGGGTGGATGTGTGG 60.463 60.000 0.00 0.00 0.00 4.17
850 3702 1.091771 GCGATCTGGGTGGATGTGTG 61.092 60.000 0.00 0.00 0.00 3.82
851 3703 1.221840 GCGATCTGGGTGGATGTGT 59.778 57.895 0.00 0.00 0.00 3.72
852 3704 1.524621 GGCGATCTGGGTGGATGTG 60.525 63.158 0.00 0.00 0.00 3.21
853 3705 1.995066 TGGCGATCTGGGTGGATGT 60.995 57.895 0.00 0.00 0.00 3.06
854 3706 1.524621 GTGGCGATCTGGGTGGATG 60.525 63.158 0.00 0.00 0.00 3.51
855 3707 2.911143 GTGGCGATCTGGGTGGAT 59.089 61.111 0.00 0.00 0.00 3.41
856 3708 3.770040 CGTGGCGATCTGGGTGGA 61.770 66.667 0.00 0.00 0.00 4.02
858 3710 4.758251 TGCGTGGCGATCTGGGTG 62.758 66.667 0.00 0.00 0.00 4.61
859 3711 4.015406 TTGCGTGGCGATCTGGGT 62.015 61.111 0.00 0.00 0.00 4.51
880 3732 3.506312 CTTCCGTGTGTGTGTGCGC 62.506 63.158 0.00 0.00 0.00 6.09
882 3734 2.327940 GCTTCCGTGTGTGTGTGC 59.672 61.111 0.00 0.00 0.00 4.57
884 3736 1.817941 GTGGCTTCCGTGTGTGTGT 60.818 57.895 0.00 0.00 0.00 3.72
885 3737 1.498865 GAGTGGCTTCCGTGTGTGTG 61.499 60.000 0.00 0.00 0.00 3.82
887 3739 0.946221 GAGAGTGGCTTCCGTGTGTG 60.946 60.000 0.00 0.00 0.00 3.82
888 3740 1.367840 GAGAGTGGCTTCCGTGTGT 59.632 57.895 0.00 0.00 0.00 3.72
891 3743 2.266055 GGGAGAGTGGCTTCCGTG 59.734 66.667 0.00 0.00 30.86 4.94
892 3744 3.003763 GGGGAGAGTGGCTTCCGT 61.004 66.667 0.00 0.00 44.07 4.69
941 3808 3.695825 GGAGGTGGAGGGAGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
961 3847 4.785453 GGGCAGCTTGGTCGGAGG 62.785 72.222 0.00 0.00 0.00 4.30
976 3862 4.183858 TTAGGGATTGGCCGCGGG 62.184 66.667 29.38 8.95 37.63 6.13
979 3865 2.907407 GGCTTAGGGATTGGCCGC 60.907 66.667 0.00 0.00 37.63 6.53
981 3867 2.907407 GCGGCTTAGGGATTGGCC 60.907 66.667 0.00 0.00 41.02 5.36
982 3868 3.279875 CGCGGCTTAGGGATTGGC 61.280 66.667 0.00 0.00 0.00 4.52
985 3871 0.034059 CTCATCGCGGCTTAGGGATT 59.966 55.000 6.13 0.00 41.06 3.01
986 3872 1.668294 CTCATCGCGGCTTAGGGAT 59.332 57.895 6.13 2.30 43.30 3.85
987 3873 3.129300 CTCATCGCGGCTTAGGGA 58.871 61.111 6.13 0.00 37.49 4.20
990 3876 1.953138 CCAGCTCATCGCGGCTTAG 60.953 63.158 6.13 0.00 45.59 2.18
991 3877 2.106938 CCAGCTCATCGCGGCTTA 59.893 61.111 6.13 0.00 45.59 3.09
992 3878 4.087892 ACCAGCTCATCGCGGCTT 62.088 61.111 6.13 0.00 45.59 4.35
993 3879 4.827087 CACCAGCTCATCGCGGCT 62.827 66.667 6.13 3.48 45.59 5.52
1473 4380 1.202687 GGGATCTTGCCGATGACATCA 60.203 52.381 15.58 0.00 30.84 3.07
1531 4441 3.256704 AGTAGAAGTTGGGGTGATCCAA 58.743 45.455 0.00 0.00 43.82 3.53
1788 4698 1.444672 CGCCCAGATCTCATGCTCA 59.555 57.895 0.00 0.00 0.00 4.26
1953 4863 1.831286 CTTCCCAGCCATGGCATCC 60.831 63.158 37.18 9.39 46.19 3.51
1956 4866 2.940467 TCCTTCCCAGCCATGGCA 60.940 61.111 37.18 15.37 46.19 4.92
1965 4875 3.636231 CACACCGCCTCCTTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
1993 4903 1.205893 GACAAGCTCGTTCTCCTGGAT 59.794 52.381 0.00 0.00 0.00 3.41
2016 4926 1.098129 TGATCTCCTCGAGCTCCGTG 61.098 60.000 6.99 4.55 39.75 4.94
2062 4972 5.277202 CCAAATGCTCAATGTCGATACTGAG 60.277 44.000 15.26 15.26 38.66 3.35
2151 5690 4.635223 CCTTCATCTTATCGATCCAAGCA 58.365 43.478 0.00 0.00 0.00 3.91
2270 5809 9.699410 ATGATGGGATGTAACTAATTTCAGAAA 57.301 29.630 0.00 0.00 0.00 2.52
2345 5884 6.183360 GCACAGATAATCGATTCACAACTTGA 60.183 38.462 15.25 0.00 0.00 3.02
2451 5990 6.768861 ACAATACCAAACACAAGTGCTACTAA 59.231 34.615 0.00 0.00 0.00 2.24
2554 9818 6.688637 TGCACTATCAATCAAAAGAGATGG 57.311 37.500 0.00 0.00 0.00 3.51
2599 9864 5.428496 AAGACATGATGCCATTGTTATCG 57.572 39.130 0.00 0.00 0.00 2.92
2613 9878 8.366401 TGAAATAATTGGCAGAAAAAGACATGA 58.634 29.630 0.00 0.00 0.00 3.07
2626 9891 6.662865 TCAACTTCCTTGAAATAATTGGCA 57.337 33.333 0.00 0.00 35.84 4.92
2654 10542 3.488310 CAGCACAATGTTTGTTGCTTCTC 59.512 43.478 11.80 0.00 43.23 2.87
2709 10597 7.666804 TGATGCATTGTTATCTTGCTACCATAT 59.333 33.333 0.00 0.00 37.28 1.78
2775 13120 1.165270 GTGATCCAGGACCCAAAACG 58.835 55.000 0.00 0.00 0.00 3.60
2786 13131 3.642377 AGTGATCTGATCCTGTGATCCAG 59.358 47.826 14.71 4.67 45.74 3.86
2805 13150 1.568612 CCTACTGTGCGGTGCAAGTG 61.569 60.000 13.23 2.59 41.47 3.16
2874 13219 1.664016 CGCACAAGGAACACATTCAGC 60.664 52.381 0.00 0.00 36.46 4.26
2922 13276 6.989759 TGAATATATACTGCATGTTTCCGTGT 59.010 34.615 0.00 0.00 0.00 4.49
2971 13369 1.268625 ACTCGCGTGTACATCTTGTCA 59.731 47.619 12.81 0.00 0.00 3.58
2988 13386 4.170256 GCTAGTACAAGAACAGAGCACTC 58.830 47.826 0.00 0.00 33.26 3.51
3093 13742 3.220110 AGGTCATGGCATTATCAAGCAG 58.780 45.455 0.00 0.00 0.00 4.24
3127 13776 3.000322 CAGCGAGAATTACAACCACGATC 60.000 47.826 0.00 0.00 0.00 3.69
3131 13780 1.130561 GGCAGCGAGAATTACAACCAC 59.869 52.381 0.00 0.00 0.00 4.16
3151 13806 5.841957 AAAGAAGCCCATAGTAGCATTTG 57.158 39.130 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.