Multiple sequence alignment - TraesCS3A01G503300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G503300 chr3A 100.000 6037 0 0 1 6037 726108531 726102495 0.000000e+00 11149.0
1 TraesCS3A01G503300 chr3A 79.464 1753 260 60 3326 5056 726116681 726115007 0.000000e+00 1151.0
2 TraesCS3A01G503300 chr3A 84.205 1013 128 21 2165 3156 726117841 726116840 0.000000e+00 955.0
3 TraesCS3A01G503300 chr3A 83.203 256 34 6 5542 5789 634711806 634711552 6.090000e-55 226.0
4 TraesCS3A01G503300 chr3A 95.935 123 5 0 3539 3661 497176963 497177085 3.690000e-47 200.0
5 TraesCS3A01G503300 chr3A 90.196 153 9 5 1974 2120 497176843 497176995 1.720000e-45 195.0
6 TraesCS3A01G503300 chr3A 97.959 49 1 0 3163 3211 614127986 614127938 1.080000e-12 86.1
7 TraesCS3A01G503300 chr3D 89.601 3058 178 63 202 3163 595067581 595064568 0.000000e+00 3757.0
8 TraesCS3A01G503300 chr3D 94.861 2335 91 17 3208 5536 595064579 595062268 0.000000e+00 3620.0
9 TraesCS3A01G503300 chr3D 79.614 1761 264 60 3326 5064 595071922 595070235 0.000000e+00 1175.0
10 TraesCS3A01G503300 chr3D 84.783 1012 125 18 2165 3157 595073086 595072085 0.000000e+00 989.0
11 TraesCS3A01G503300 chr3D 83.750 480 46 18 5565 6015 595062211 595061735 5.590000e-115 425.0
12 TraesCS3A01G503300 chr3D 91.061 179 12 3 2383 2558 595061657 595061480 7.820000e-59 239.0
13 TraesCS3A01G503300 chr3D 97.674 43 1 0 2541 2583 595061438 595061396 2.330000e-09 75.0
14 TraesCS3A01G503300 chr3B 95.349 1978 79 10 3340 5311 798495044 798493074 0.000000e+00 3131.0
15 TraesCS3A01G503300 chr3B 90.243 2347 146 43 858 3163 798497543 798495239 0.000000e+00 2988.0
16 TraesCS3A01G503300 chr3B 81.303 1428 194 46 3350 4761 798505163 798503793 0.000000e+00 1090.0
17 TraesCS3A01G503300 chr3B 81.628 1339 168 43 1871 3154 798506664 798505349 0.000000e+00 1038.0
18 TraesCS3A01G503300 chr3B 87.500 312 33 4 5567 5874 798492661 798492352 7.440000e-94 355.0
19 TraesCS3A01G503300 chr3B 92.174 230 14 4 5310 5537 798492947 798492720 7.550000e-84 322.0
20 TraesCS3A01G503300 chr3B 77.237 637 78 46 217 823 798498315 798497716 1.630000e-80 311.0
21 TraesCS3A01G503300 chr3B 88.202 178 18 2 2385 2559 798491820 798491643 6.130000e-50 209.0
22 TraesCS3A01G503300 chr3B 96.667 120 4 0 3208 3327 798495250 798495131 3.690000e-47 200.0
23 TraesCS3A01G503300 chr3B 92.308 104 8 0 3472 3575 798509861 798509758 1.360000e-31 148.0
24 TraesCS3A01G503300 chr3B 97.403 77 2 0 3208 3284 798495116 798495040 1.370000e-26 132.0
25 TraesCS3A01G503300 chr3B 97.959 49 0 1 3163 3211 2885226 2885179 3.880000e-12 84.2
26 TraesCS3A01G503300 chr3B 97.959 49 0 1 3163 3210 229295988 229295940 3.880000e-12 84.2
27 TraesCS3A01G503300 chr3B 100.000 32 0 0 3132 3163 798495136 798495105 6.530000e-05 60.2
28 TraesCS3A01G503300 chr5B 94.100 678 18 7 1973 2629 489349088 489348412 0.000000e+00 1011.0
29 TraesCS3A01G503300 chr5B 96.136 440 15 2 3223 3661 489347997 489347559 0.000000e+00 717.0
30 TraesCS3A01G503300 chr5B 92.457 411 28 3 2741 3150 489348402 489347994 8.720000e-163 584.0
31 TraesCS3A01G503300 chr5B 80.269 223 36 7 5543 5758 420371355 420371576 1.740000e-35 161.0
32 TraesCS3A01G503300 chr5B 81.818 198 29 5 5564 5756 559760343 559760538 6.260000e-35 159.0
33 TraesCS3A01G503300 chr4B 95.227 440 19 2 3223 3661 307617874 307617436 0.000000e+00 695.0
34 TraesCS3A01G503300 chr4B 94.217 415 23 1 2675 3088 307639612 307639198 3.070000e-177 632.0
35 TraesCS3A01G503300 chr4B 100.000 28 0 0 1188 1215 164627414 164627387 1.100000e-02 52.8
36 TraesCS3A01G503300 chr7D 82.573 241 31 9 5542 5775 611352507 611352743 1.030000e-47 202.0
37 TraesCS3A01G503300 chr1B 75.524 429 71 18 2482 2907 30466896 30466499 4.810000e-41 180.0
38 TraesCS3A01G503300 chr1B 87.500 120 15 0 3394 3513 30466194 30466075 8.160000e-29 139.0
39 TraesCS3A01G503300 chr1B 100.000 28 0 0 1188 1215 469368430 469368457 1.100000e-02 52.8
40 TraesCS3A01G503300 chr6A 80.083 241 39 7 5542 5775 499650436 499650674 2.890000e-38 171.0
41 TraesCS3A01G503300 chr6A 79.339 242 36 10 5543 5774 517324782 517324545 2.250000e-34 158.0
42 TraesCS3A01G503300 chr1D 80.000 215 35 6 5548 5756 383758261 383758049 1.050000e-32 152.0
43 TraesCS3A01G503300 chr4A 100.000 49 0 0 3163 3211 522909790 522909838 2.320000e-14 91.6
44 TraesCS3A01G503300 chr2B 100.000 47 0 0 3163 3209 314771525 314771571 3.000000e-13 87.9
45 TraesCS3A01G503300 chr2B 100.000 28 0 0 1188 1215 127428492 127428519 1.100000e-02 52.8
46 TraesCS3A01G503300 chr5D 100.000 45 0 0 3163 3207 533661533 533661577 3.880000e-12 84.2
47 TraesCS3A01G503300 chr5D 90.000 60 3 3 3163 3221 319691459 319691402 2.330000e-09 75.0
48 TraesCS3A01G503300 chr2A 100.000 45 0 0 3163 3207 457916832 457916876 3.880000e-12 84.2
49 TraesCS3A01G503300 chr2A 100.000 28 0 0 1188 1215 264333638 264333665 1.100000e-02 52.8
50 TraesCS3A01G503300 chr2A 100.000 28 0 0 1188 1215 441451678 441451705 1.100000e-02 52.8
51 TraesCS3A01G503300 chr1A 100.000 45 0 0 3163 3207 137409944 137409900 3.880000e-12 84.2
52 TraesCS3A01G503300 chr1A 100.000 28 0 0 1188 1215 190382367 190382394 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G503300 chr3A 726102495 726108531 6036 True 11149.000000 11149 100.000000 1 6037 1 chr3A.!!$R3 6036
1 TraesCS3A01G503300 chr3A 726115007 726117841 2834 True 1053.000000 1151 81.834500 2165 5056 2 chr3A.!!$R4 2891
2 TraesCS3A01G503300 chr3D 595061396 595073086 11690 True 1468.571429 3757 88.763429 202 6015 7 chr3D.!!$R1 5813
3 TraesCS3A01G503300 chr3B 798491643 798498315 6672 True 856.466667 3131 91.641667 217 5874 9 chr3B.!!$R3 5657
4 TraesCS3A01G503300 chr3B 798503793 798509861 6068 True 758.666667 1090 85.079667 1871 4761 3 chr3B.!!$R4 2890
5 TraesCS3A01G503300 chr5B 489347559 489349088 1529 True 770.666667 1011 94.231000 1973 3661 3 chr5B.!!$R1 1688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.168128 CGAAGCGATTGGGTTTGACC 59.832 55.000 0.0 0.0 39.43 4.02 F
1031 6545 0.039165 GGCAAACAGGAAAAGGCTCG 60.039 55.000 0.0 0.0 0.00 5.03 F
1394 6916 0.028770 CGAGGAGACTGATGACGAGC 59.971 60.000 0.0 0.0 44.43 5.03 F
1904 7474 1.266718 TGTTGCTCAAATTCTGCGTCC 59.733 47.619 0.0 0.0 0.00 4.79 F
2002 7572 1.511613 ACCTGTATGCTACATGCCCT 58.488 50.000 0.0 0.0 42.00 5.19 F
3177 8820 0.178903 TAGGACCTTGTGTGGGAGCT 60.179 55.000 0.0 0.0 0.00 4.09 F
4738 10521 0.108138 AGTGCGGTCATCTGGTAAGC 60.108 55.000 0.0 0.0 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 6897 0.028770 GCTCGTCATCAGTCTCCTCG 59.971 60.0 0.00 0.0 0.00 4.63 R
2115 7712 0.722469 CAAGCGCACGACAACATGAC 60.722 55.0 11.47 0.0 0.00 3.06 R
3171 8814 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.0 0.00 0.0 34.99 4.30 R
3172 8815 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.0 0.00 0.0 34.99 4.70 R
3182 8825 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.0 0.00 0.0 40.05 4.57 R
4874 10658 1.892209 TCGGACAGAAAAAGAAGGGC 58.108 50.0 0.00 0.0 0.00 5.19 R
5705 11665 0.460459 TGGCAAGTTGTGTTCGTCGA 60.460 50.0 4.48 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.292223 CGACCGATGGAAGTGTGGT 59.708 57.895 0.00 0.00 35.14 4.16
21 22 1.014044 CGACCGATGGAAGTGTGGTG 61.014 60.000 0.00 0.00 31.86 4.17
22 23 0.673644 GACCGATGGAAGTGTGGTGG 60.674 60.000 0.00 0.00 31.86 4.61
25 26 0.391661 CGATGGAAGTGTGGTGGAGG 60.392 60.000 0.00 0.00 0.00 4.30
27 28 1.073923 GATGGAAGTGTGGTGGAGGTT 59.926 52.381 0.00 0.00 0.00 3.50
28 29 0.472471 TGGAAGTGTGGTGGAGGTTC 59.528 55.000 0.00 0.00 0.00 3.62
30 31 1.594331 GAAGTGTGGTGGAGGTTCAC 58.406 55.000 0.00 0.00 36.95 3.18
32 33 1.145377 GTGTGGTGGAGGTTCACGT 59.855 57.895 0.00 0.00 38.46 4.49
33 34 1.145156 TGTGGTGGAGGTTCACGTG 59.855 57.895 9.94 9.94 38.46 4.49
34 35 2.110213 TGGTGGAGGTTCACGTGC 59.890 61.111 11.67 0.00 38.46 5.34
36 37 2.028484 GTGGAGGTTCACGTGCGA 59.972 61.111 11.67 0.00 0.00 5.10
37 38 1.593209 GTGGAGGTTCACGTGCGAA 60.593 57.895 11.67 0.00 0.00 4.70
38 39 1.300620 TGGAGGTTCACGTGCGAAG 60.301 57.895 11.67 0.00 0.00 3.79
53 54 0.168128 CGAAGCGATTGGGTTTGACC 59.832 55.000 0.00 0.00 39.43 4.02
63 64 3.425122 GGTTTGACCCCTTTCGGAA 57.575 52.632 0.00 0.00 30.04 4.30
87 88 2.815211 CACGGCCGTGTGATCCTG 60.815 66.667 42.92 20.89 42.55 3.86
91 92 2.436646 GCCGTGTGATCCTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
92 93 2.954684 GCCGTGTGATCCTGTGGGA 61.955 63.158 0.00 0.00 46.81 4.37
101 102 1.002624 TCCTGTGGGATTCAACGCC 60.003 57.895 0.00 0.00 36.57 5.68
102 103 2.398554 CCTGTGGGATTCAACGCCG 61.399 63.158 0.00 0.00 33.58 6.46
103 104 2.359354 TGTGGGATTCAACGCCGG 60.359 61.111 0.00 0.00 0.00 6.13
104 105 2.046700 GTGGGATTCAACGCCGGA 60.047 61.111 5.05 0.00 0.00 5.14
106 107 2.822701 GGGATTCAACGCCGGACC 60.823 66.667 5.05 0.00 0.00 4.46
107 108 3.192922 GGATTCAACGCCGGACCG 61.193 66.667 5.05 6.99 0.00 4.79
108 109 3.861263 GATTCAACGCCGGACCGC 61.861 66.667 5.05 3.09 0.00 5.68
128 129 3.920112 CCTGTCGGCTATAAACGTTTC 57.080 47.619 18.42 2.59 0.00 2.78
130 131 2.606272 CTGTCGGCTATAAACGTTTCCC 59.394 50.000 18.42 12.46 0.00 3.97
141 142 2.808958 CGTTTCCCGTATGCAGGCG 61.809 63.158 5.81 5.81 0.00 5.52
155 156 1.745827 GCAGGCGCAAGTATTTAGGGA 60.746 52.381 10.83 0.00 38.36 4.20
156 157 2.639065 CAGGCGCAAGTATTTAGGGAA 58.361 47.619 10.83 0.00 41.68 3.97
157 158 3.013921 CAGGCGCAAGTATTTAGGGAAA 58.986 45.455 10.83 0.00 41.68 3.13
158 159 3.442273 CAGGCGCAAGTATTTAGGGAAAA 59.558 43.478 10.83 0.00 41.68 2.29
160 161 4.097892 AGGCGCAAGTATTTAGGGAAAATG 59.902 41.667 10.83 0.00 36.57 2.32
163 164 5.273944 CGCAAGTATTTAGGGAAAATGCTC 58.726 41.667 2.29 0.00 46.15 4.26
166 167 6.350110 GCAAGTATTTAGGGAAAATGCTCACA 60.350 38.462 2.29 0.00 46.15 3.58
167 168 7.631377 GCAAGTATTTAGGGAAAATGCTCACAT 60.631 37.037 2.29 0.00 46.15 3.21
168 169 7.961326 AGTATTTAGGGAAAATGCTCACATT 57.039 32.000 0.00 0.00 44.35 2.71
169 170 8.000780 AGTATTTAGGGAAAATGCTCACATTC 57.999 34.615 0.00 0.00 44.35 2.67
174 175 6.916360 AGGGAAAATGCTCACATTCTAAAA 57.084 33.333 0.00 0.00 45.90 1.52
175 176 7.301868 AGGGAAAATGCTCACATTCTAAAAA 57.698 32.000 0.00 0.00 45.90 1.94
176 177 7.381323 AGGGAAAATGCTCACATTCTAAAAAG 58.619 34.615 0.00 0.00 45.90 2.27
178 179 7.116805 GGGAAAATGCTCACATTCTAAAAAGTG 59.883 37.037 0.00 0.00 45.90 3.16
179 180 7.867403 GGAAAATGCTCACATTCTAAAAAGTGA 59.133 33.333 0.00 0.00 45.90 3.41
180 181 8.579682 AAAATGCTCACATTCTAAAAAGTGAC 57.420 30.769 0.00 0.00 45.90 3.67
181 182 5.342806 TGCTCACATTCTAAAAAGTGACG 57.657 39.130 0.00 0.00 37.98 4.35
182 183 4.213270 TGCTCACATTCTAAAAAGTGACGG 59.787 41.667 0.00 0.00 37.98 4.79
185 186 4.994852 TCACATTCTAAAAAGTGACGGGAG 59.005 41.667 0.00 0.00 37.98 4.30
188 189 5.643777 ACATTCTAAAAAGTGACGGGAGATG 59.356 40.000 0.00 0.00 0.00 2.90
189 190 4.884668 TCTAAAAAGTGACGGGAGATGT 57.115 40.909 0.00 0.00 0.00 3.06
192 193 2.185004 AAAGTGACGGGAGATGTTGG 57.815 50.000 0.00 0.00 0.00 3.77
194 195 1.194781 AGTGACGGGAGATGTTGGCT 61.195 55.000 0.00 0.00 0.00 4.75
195 196 0.321653 GTGACGGGAGATGTTGGCTT 60.322 55.000 0.00 0.00 0.00 4.35
196 197 0.321564 TGACGGGAGATGTTGGCTTG 60.322 55.000 0.00 0.00 0.00 4.01
197 198 1.002134 ACGGGAGATGTTGGCTTGG 60.002 57.895 0.00 0.00 0.00 3.61
199 200 1.691219 GGGAGATGTTGGCTTGGGA 59.309 57.895 0.00 0.00 0.00 4.37
200 201 0.394899 GGGAGATGTTGGCTTGGGAG 60.395 60.000 0.00 0.00 0.00 4.30
212 213 2.820767 CTTGGGAGCGTGACCGAGAC 62.821 65.000 3.43 0.00 40.13 3.36
213 214 3.063084 GGGAGCGTGACCGAGACT 61.063 66.667 0.00 0.00 35.63 3.24
214 215 2.637383 GGGAGCGTGACCGAGACTT 61.637 63.158 0.00 0.00 35.63 3.01
215 216 1.444553 GGAGCGTGACCGAGACTTG 60.445 63.158 0.00 0.00 35.63 3.16
230 5538 2.000447 GACTTGAGGAATTTCCGGACG 59.000 52.381 1.83 3.57 42.75 4.79
252 5560 5.634859 ACGACCGATAAAACAAAACGAGTAT 59.365 36.000 0.00 0.00 0.00 2.12
257 5565 9.807649 ACCGATAAAACAAAACGAGTATATACT 57.192 29.630 15.37 15.37 39.71 2.12
370 5687 1.070786 GGATCGAAATAGCCGCCCA 59.929 57.895 0.00 0.00 0.00 5.36
409 5730 2.430921 CGCTCGTTTGGCGTCTCT 60.431 61.111 0.00 0.00 46.37 3.10
633 5993 4.162690 GCGATCAGGGGTTCCGCT 62.163 66.667 2.51 2.51 42.24 5.52
634 5994 2.107141 CGATCAGGGGTTCCGCTC 59.893 66.667 5.44 0.00 38.33 5.03
635 5995 2.506472 GATCAGGGGTTCCGCTCC 59.494 66.667 5.44 0.00 38.29 4.70
636 5996 3.447025 GATCAGGGGTTCCGCTCCG 62.447 68.421 5.44 0.00 44.51 4.63
677 6037 1.418373 CGAGCGCCGATTGATTGATA 58.582 50.000 2.29 0.00 41.76 2.15
711 6083 2.303549 CTGCCGTCCCTCATCTGACC 62.304 65.000 0.00 0.00 0.00 4.02
751 6123 6.102897 ACTAGTTCTGTACATGCTCTGTTT 57.897 37.500 0.00 0.00 39.39 2.83
794 6170 8.651589 ATCACTGTATTTTATCTATCGGGAGA 57.348 34.615 0.00 0.00 46.90 3.71
833 6209 2.571757 CCGTCGCTGTCCTTGCTA 59.428 61.111 0.00 0.00 0.00 3.49
834 6210 1.517257 CCGTCGCTGTCCTTGCTAG 60.517 63.158 0.00 0.00 0.00 3.42
835 6211 1.506718 CGTCGCTGTCCTTGCTAGA 59.493 57.895 0.00 0.00 0.00 2.43
836 6212 0.524392 CGTCGCTGTCCTTGCTAGAG 60.524 60.000 0.00 0.00 0.00 2.43
837 6213 0.804156 GTCGCTGTCCTTGCTAGAGC 60.804 60.000 0.00 0.00 42.50 4.09
849 6225 2.593346 GCTAGAGCAAGCTAGAGCAA 57.407 50.000 17.89 0.00 40.20 3.91
851 6227 2.472816 CTAGAGCAAGCTAGAGCAAGC 58.527 52.381 4.01 7.16 45.16 4.01
887 6401 1.135575 CCAAATCTCTCGCAAACCTGC 60.136 52.381 0.00 0.00 45.75 4.85
901 6415 5.640189 CAAACCTGCAGAAATCATCTCTT 57.360 39.130 17.39 0.00 35.73 2.85
905 6419 3.626670 CCTGCAGAAATCATCTCTTCCAC 59.373 47.826 17.39 0.00 35.73 4.02
906 6420 4.259356 CTGCAGAAATCATCTCTTCCACA 58.741 43.478 8.42 0.00 35.73 4.17
927 6441 6.073167 CCACACATTTTTATTTTCTGCATGCA 60.073 34.615 21.29 21.29 0.00 3.96
942 6456 2.410469 GCATGCTGCGTTCATCCC 59.590 61.111 11.37 0.00 31.71 3.85
943 6457 2.409055 GCATGCTGCGTTCATCCCA 61.409 57.895 11.37 0.00 31.71 4.37
946 6460 2.825836 GCTGCGTTCATCCCAGGG 60.826 66.667 0.00 0.00 0.00 4.45
947 6461 2.671070 CTGCGTTCATCCCAGGGT 59.329 61.111 5.01 0.00 0.00 4.34
948 6462 1.450312 CTGCGTTCATCCCAGGGTC 60.450 63.158 5.01 0.00 0.00 4.46
949 6463 2.511600 GCGTTCATCCCAGGGTCG 60.512 66.667 5.01 5.51 0.00 4.79
951 6465 2.990479 GTTCATCCCAGGGTCGCT 59.010 61.111 5.01 0.00 0.00 4.93
963 6477 2.504244 GTCGCTGACGCTTACGCT 60.504 61.111 0.00 0.00 45.53 5.07
964 6478 2.504026 TCGCTGACGCTTACGCTG 60.504 61.111 0.00 0.00 45.53 5.18
1031 6545 0.039165 GGCAAACAGGAAAAGGCTCG 60.039 55.000 0.00 0.00 0.00 5.03
1040 6554 1.566018 GAAAAGGCTCGTGACACCCG 61.566 60.000 0.00 0.00 0.00 5.28
1048 6562 1.997606 CTCGTGACACCCGGTAAATTC 59.002 52.381 0.00 0.00 0.00 2.17
1076 6590 4.808414 AACCGAGAGACATCATTCTTCA 57.192 40.909 0.00 0.00 0.00 3.02
1077 6591 4.116747 ACCGAGAGACATCATTCTTCAC 57.883 45.455 0.00 0.00 0.00 3.18
1088 6602 9.028284 AGACATCATTCTTCACAACCATTTATT 57.972 29.630 0.00 0.00 0.00 1.40
1114 6628 1.231296 TTTTGCATAGTGCCGCGTCA 61.231 50.000 4.92 0.00 44.23 4.35
1124 6638 2.046314 CCGCGTCAATCCAGGGTT 60.046 61.111 4.92 0.00 0.00 4.11
1132 6646 0.606401 CAATCCAGGGTTGCTGACGT 60.606 55.000 0.00 0.00 0.00 4.34
1133 6647 0.606401 AATCCAGGGTTGCTGACGTG 60.606 55.000 0.00 0.00 0.00 4.49
1138 6652 1.119574 AGGGTTGCTGACGTGTAGGT 61.120 55.000 0.00 0.00 0.00 3.08
1144 6658 2.683968 TGCTGACGTGTAGGTGAAATC 58.316 47.619 0.00 0.00 0.00 2.17
1147 6661 1.276989 TGACGTGTAGGTGAAATCCCC 59.723 52.381 0.00 0.00 0.00 4.81
1169 6683 0.388649 GTGGTTCTGCAGATCGTCGT 60.389 55.000 19.04 0.00 0.00 4.34
1189 6703 3.192630 ACAATGTGGGGCTGGGGT 61.193 61.111 0.00 0.00 0.00 4.95
1252 6767 3.075884 CACCCGGTAAATTTCTCGGAAA 58.924 45.455 24.71 2.25 44.69 3.13
1254 6769 2.421073 CCCGGTAAATTTCTCGGAAACC 59.579 50.000 24.71 12.14 44.69 3.27
1278 6793 4.987912 GCGAGAAATCATTTTTCCCAACAA 59.012 37.500 0.00 0.00 0.00 2.83
1279 6794 5.639082 GCGAGAAATCATTTTTCCCAACAAT 59.361 36.000 0.00 0.00 0.00 2.71
1280 6795 6.401367 GCGAGAAATCATTTTTCCCAACAATG 60.401 38.462 0.00 0.00 0.00 2.82
1304 6826 2.697431 TTTTGGCATAGTGCGTTCAC 57.303 45.000 0.00 0.00 46.21 3.18
1311 6833 2.536997 ATAGTGCGTTCACCCAGGGC 62.537 60.000 4.91 0.00 44.16 5.19
1338 6860 1.084289 GCGTAGGCGAAATTCCTGTT 58.916 50.000 0.00 0.00 41.33 3.16
1353 6875 0.861837 CTGTTGTTCTGCAGGTCGTC 59.138 55.000 15.13 3.18 0.00 4.20
1369 6891 3.144871 TCGCCGACGATGTGGGAT 61.145 61.111 1.90 0.00 45.12 3.85
1375 6897 1.560923 CGACGATGTGGGATGAAGAC 58.439 55.000 0.00 0.00 0.00 3.01
1394 6916 0.028770 CGAGGAGACTGATGACGAGC 59.971 60.000 0.00 0.00 44.43 5.03
1396 6918 1.680735 GAGGAGACTGATGACGAGCAT 59.319 52.381 0.00 0.00 44.43 3.79
1415 6937 3.942748 GCATGACACCCGGTAAATTTCTA 59.057 43.478 0.00 0.00 0.00 2.10
1422 6944 4.397103 CACCCGGTAAATTTCTAGGAAACC 59.603 45.833 0.00 0.00 0.00 3.27
1423 6945 3.624410 CCCGGTAAATTTCTAGGAAACCG 59.376 47.826 15.81 15.81 45.96 4.44
1669 7236 2.752354 GCCCATGTACAATTACAGCACA 59.248 45.455 0.00 0.00 41.62 4.57
1798 7367 2.678190 GCTCTGAATCCTACCGCTGTTT 60.678 50.000 0.00 0.00 0.00 2.83
1834 7404 2.866762 ACTTCAGCGAAAAGTCAGACAC 59.133 45.455 2.66 0.00 31.36 3.67
1851 7421 4.335647 CAGGCGGTCACCCAGCTT 62.336 66.667 0.00 0.00 32.89 3.74
1862 7432 4.434520 GTCACCCAGCTTATTCTAGTGTC 58.565 47.826 0.00 0.00 0.00 3.67
1863 7433 3.451178 TCACCCAGCTTATTCTAGTGTCC 59.549 47.826 0.00 0.00 0.00 4.02
1904 7474 1.266718 TGTTGCTCAAATTCTGCGTCC 59.733 47.619 0.00 0.00 0.00 4.79
1920 7490 4.331968 TGCGTCCCTGTTATTCAATCTTT 58.668 39.130 0.00 0.00 0.00 2.52
1922 7492 4.394920 GCGTCCCTGTTATTCAATCTTTGA 59.605 41.667 0.00 0.00 38.04 2.69
2002 7572 1.511613 ACCTGTATGCTACATGCCCT 58.488 50.000 0.00 0.00 42.00 5.19
2017 7587 3.275617 TGCCCTAATCTGCATAACGTT 57.724 42.857 5.88 5.88 31.31 3.99
2286 7895 6.650427 TGTTACTTCTGTATCACTGTCACT 57.350 37.500 0.00 0.00 0.00 3.41
2391 8008 3.147629 AGAATCTCTGCATGCCATTAGC 58.852 45.455 16.68 0.00 44.14 3.09
2511 8129 3.845178 TGGTAAGTATTCGCTCACTGTG 58.155 45.455 0.17 0.17 0.00 3.66
2928 8548 4.969196 ACGTGCACGCCAGACCTG 62.969 66.667 37.35 10.10 44.43 4.00
3026 8666 8.797438 TCCTTTTGTTTAATTTTGTTGGCTTTT 58.203 25.926 0.00 0.00 0.00 2.27
3038 8678 2.600470 TGGCTTTTCCTTGCTTTGTG 57.400 45.000 0.00 0.00 35.26 3.33
3162 8805 3.788116 TGTTCCCAGATTACCCTAGGA 57.212 47.619 11.48 0.00 0.00 2.94
3163 8806 3.381335 TGTTCCCAGATTACCCTAGGAC 58.619 50.000 11.48 0.00 0.00 3.85
3164 8807 2.704596 GTTCCCAGATTACCCTAGGACC 59.295 54.545 11.48 0.00 0.00 4.46
3165 8808 2.233178 TCCCAGATTACCCTAGGACCT 58.767 52.381 11.48 0.00 0.00 3.85
3166 8809 2.595380 TCCCAGATTACCCTAGGACCTT 59.405 50.000 11.48 0.00 0.00 3.50
3167 8810 2.706190 CCCAGATTACCCTAGGACCTTG 59.294 54.545 11.48 0.00 0.00 3.61
3168 8811 3.385115 CCAGATTACCCTAGGACCTTGT 58.615 50.000 11.48 1.04 0.00 3.16
3169 8812 3.134804 CCAGATTACCCTAGGACCTTGTG 59.865 52.174 11.48 1.30 0.00 3.33
3170 8813 3.775316 CAGATTACCCTAGGACCTTGTGT 59.225 47.826 11.48 0.00 0.00 3.72
3171 8814 3.775316 AGATTACCCTAGGACCTTGTGTG 59.225 47.826 11.48 0.00 0.00 3.82
3172 8815 1.946984 TACCCTAGGACCTTGTGTGG 58.053 55.000 11.48 0.00 0.00 4.17
3173 8816 0.840722 ACCCTAGGACCTTGTGTGGG 60.841 60.000 11.48 6.97 39.06 4.61
3174 8817 0.546747 CCCTAGGACCTTGTGTGGGA 60.547 60.000 11.48 0.00 35.40 4.37
3175 8818 0.905357 CCTAGGACCTTGTGTGGGAG 59.095 60.000 1.05 0.00 0.00 4.30
3176 8819 0.250513 CTAGGACCTTGTGTGGGAGC 59.749 60.000 0.00 0.00 0.00 4.70
3177 8820 0.178903 TAGGACCTTGTGTGGGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
3178 8821 1.062488 AGGACCTTGTGTGGGAGCTT 61.062 55.000 0.00 0.00 0.00 3.74
3179 8822 0.606673 GGACCTTGTGTGGGAGCTTC 60.607 60.000 0.00 0.00 0.00 3.86
3180 8823 0.398318 GACCTTGTGTGGGAGCTTCT 59.602 55.000 0.00 0.00 0.00 2.85
3181 8824 1.623811 GACCTTGTGTGGGAGCTTCTA 59.376 52.381 0.00 0.00 0.00 2.10
3182 8825 2.237392 GACCTTGTGTGGGAGCTTCTAT 59.763 50.000 0.00 0.00 0.00 1.98
3183 8826 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
3184 8827 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
3185 8828 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
3186 8829 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
3187 8830 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
3188 8831 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
3189 8832 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
3190 8833 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
3191 8834 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
3192 8835 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
3193 8836 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
3194 8837 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
3195 8838 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3196 8839 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
3197 8840 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
3198 8841 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
3199 8842 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
3200 8843 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
3201 8844 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
3202 8845 1.064017 TGCACTGGGTCTGTCCTTTTT 60.064 47.619 0.00 0.00 36.25 1.94
3227 8870 7.685849 TTTTATTACCCTAGGATAGCACACT 57.314 36.000 11.48 0.00 37.37 3.55
3637 9411 6.077322 TCTTCAATGGAACTTCATCCCTTTT 58.923 36.000 0.00 0.00 38.82 2.27
3875 9649 2.109774 GGACCATGGGATGAAATGCAA 58.890 47.619 18.09 0.00 35.75 4.08
3897 9671 5.894298 ACCTGCTGATGAATGTATTCCTA 57.106 39.130 2.41 0.00 35.97 2.94
3898 9672 5.862845 ACCTGCTGATGAATGTATTCCTAG 58.137 41.667 2.41 0.00 35.97 3.02
3958 9733 7.944729 ACTATTATGTTGCTTCAGTTCCAAT 57.055 32.000 0.00 0.00 0.00 3.16
3993 9768 1.066002 CCCACACAGAAAACAGTGCTG 59.934 52.381 0.00 0.00 39.30 4.41
4033 9808 4.380531 TCTAGCTGTGTTTCTTGGACTTG 58.619 43.478 0.00 0.00 0.00 3.16
4403 10185 0.676466 ATTCTCATTTGCCGGCGTCA 60.676 50.000 23.90 8.41 0.00 4.35
4503 10285 4.216257 CCAATTGAAGTCCTTGAACGTGAT 59.784 41.667 7.12 0.00 0.00 3.06
4534 10316 0.399091 AGCTACCTATGCTCCAGCCA 60.399 55.000 0.00 0.00 41.18 4.75
4538 10320 0.921896 ACCTATGCTCCAGCCACAAT 59.078 50.000 0.00 0.00 41.18 2.71
4613 10395 1.002684 CAGGCTAGTAGTAAGTCCGCG 60.003 57.143 0.00 0.00 0.00 6.46
4651 10433 8.506168 TTTTTACAGTCATGGCCTCTTATTAG 57.494 34.615 3.32 0.00 0.00 1.73
4738 10521 0.108138 AGTGCGGTCATCTGGTAAGC 60.108 55.000 0.00 0.00 0.00 3.09
4874 10658 3.054802 AGTGCCTGATCTAACCTCCTTTG 60.055 47.826 0.00 0.00 0.00 2.77
4875 10659 2.293170 GCCTGATCTAACCTCCTTTGC 58.707 52.381 0.00 0.00 0.00 3.68
5066 10859 3.823304 GCAAGAGGTTGGAAAGACAATCT 59.177 43.478 0.00 0.00 44.12 2.40
5071 10864 3.138283 AGGTTGGAAAGACAATCTGGTCA 59.862 43.478 0.00 0.00 40.16 4.02
5072 10865 3.888930 GGTTGGAAAGACAATCTGGTCAA 59.111 43.478 0.00 0.00 40.29 3.18
5073 10866 4.340950 GGTTGGAAAGACAATCTGGTCAAA 59.659 41.667 0.00 0.00 40.29 2.69
5074 10867 5.163457 GGTTGGAAAGACAATCTGGTCAAAA 60.163 40.000 0.00 0.00 40.29 2.44
5141 10935 8.253867 ACTTTATATATGTCCGGAACCAACTA 57.746 34.615 5.23 0.00 0.00 2.24
5297 11092 8.087136 TGATCTGCATGACTCTTATCTTCATAC 58.913 37.037 0.00 0.00 0.00 2.39
5299 11094 5.532557 TGCATGACTCTTATCTTCATACCG 58.467 41.667 0.00 0.00 0.00 4.02
5454 11378 1.448013 GAGCTTTCGAGGGTTCCGG 60.448 63.158 0.00 0.00 0.00 5.14
5463 11387 1.077716 AGGGTTCCGGTTGCATAGC 60.078 57.895 0.00 0.00 0.00 2.97
5483 11411 3.924918 CTACTCGCCATGTAGCATACT 57.075 47.619 0.00 0.00 43.54 2.12
5516 11444 8.450964 TCTTATGAAAAATCATGGAAGACGAAC 58.549 33.333 1.69 0.00 0.00 3.95
5528 11456 3.129287 GGAAGACGAACGGACTGGTAATA 59.871 47.826 0.00 0.00 0.00 0.98
5529 11457 3.772060 AGACGAACGGACTGGTAATAC 57.228 47.619 0.00 0.00 0.00 1.89
5531 11459 3.507233 AGACGAACGGACTGGTAATACAA 59.493 43.478 0.00 0.00 0.00 2.41
5536 11492 5.613142 CGAACGGACTGGTAATACAACAAAC 60.613 44.000 0.00 0.00 0.00 2.93
5540 11496 5.349543 CGGACTGGTAATACAACAAACTACC 59.650 44.000 0.00 0.00 33.93 3.18
5541 11497 5.349543 GGACTGGTAATACAACAAACTACCG 59.650 44.000 0.00 0.00 35.73 4.02
5545 11501 7.172019 ACTGGTAATACAACAAACTACCGAAAG 59.828 37.037 0.00 0.00 35.73 2.62
5563 11519 4.793216 CGAAAGGCTAAAATTTGACATCGG 59.207 41.667 0.00 0.00 0.00 4.18
5570 11526 8.527810 AGGCTAAAATTTGACATCGGAATTTTA 58.472 29.630 16.54 16.54 41.00 1.52
5577 11534 4.269183 TGACATCGGAATTTTAGGCATGT 58.731 39.130 0.00 0.00 0.00 3.21
5653 11610 9.823647 TTTAGTTTGAAGCATGGTAATTTTTGA 57.176 25.926 0.00 0.00 0.00 2.69
5654 11611 9.995003 TTAGTTTGAAGCATGGTAATTTTTGAT 57.005 25.926 0.00 0.00 0.00 2.57
5681 11638 9.860898 AAAAATATGAACTAAGGCAGATTTGTC 57.139 29.630 0.00 0.00 36.43 3.18
5699 11659 6.691754 TTTGTCATGCTCAACTAAACTTGA 57.308 33.333 3.33 0.00 0.00 3.02
5705 11665 4.973168 TGCTCAACTAAACTTGACATCCT 58.027 39.130 0.00 0.00 0.00 3.24
5706 11666 4.997395 TGCTCAACTAAACTTGACATCCTC 59.003 41.667 0.00 0.00 0.00 3.71
5708 11668 5.462530 TCAACTAAACTTGACATCCTCGA 57.537 39.130 0.00 0.00 0.00 4.04
5718 11678 1.719780 GACATCCTCGACGAACACAAC 59.280 52.381 0.00 0.00 0.00 3.32
5762 11722 3.366052 ACCATGCCTAAAAATCCGACT 57.634 42.857 0.00 0.00 0.00 4.18
5766 11726 4.157656 CCATGCCTAAAAATCCGACTTTCA 59.842 41.667 0.00 0.00 0.00 2.69
5777 11737 6.479972 AATCCGACTTTCACTGGATATACA 57.520 37.500 0.00 0.00 40.27 2.29
5779 11739 4.341235 TCCGACTTTCACTGGATATACAGG 59.659 45.833 19.35 8.31 42.75 4.00
5821 11781 5.308825 CAGAACTAGGGTTGTCAATTCACT 58.691 41.667 0.00 0.00 35.58 3.41
5830 11790 7.690256 AGGGTTGTCAATTCACTAAAGACTAT 58.310 34.615 0.00 0.00 0.00 2.12
5867 11827 3.187227 CAGTGCAGCGAGTTGAAATACTT 59.813 43.478 0.00 0.00 0.00 2.24
5874 11834 2.902484 CGAGTTGAAATACTTTGTGCGC 59.098 45.455 0.00 0.00 0.00 6.09
5875 11835 3.363970 CGAGTTGAAATACTTTGTGCGCT 60.364 43.478 9.73 0.00 0.00 5.92
5876 11836 3.888934 AGTTGAAATACTTTGTGCGCTG 58.111 40.909 9.73 0.00 0.00 5.18
5878 11838 3.536158 TGAAATACTTTGTGCGCTGAC 57.464 42.857 9.73 0.00 0.00 3.51
5879 11839 2.875317 TGAAATACTTTGTGCGCTGACA 59.125 40.909 9.73 1.80 0.00 3.58
5880 11840 3.058983 TGAAATACTTTGTGCGCTGACAG 60.059 43.478 9.73 0.00 0.00 3.51
5881 11841 1.442769 ATACTTTGTGCGCTGACAGG 58.557 50.000 9.73 5.27 0.00 4.00
5882 11842 0.602638 TACTTTGTGCGCTGACAGGG 60.603 55.000 14.88 14.88 0.00 4.45
5888 11868 4.704833 GCGCTGACAGGGGCTTCA 62.705 66.667 19.95 0.00 41.10 3.02
5889 11869 2.270205 CGCTGACAGGGGCTTCAT 59.730 61.111 11.58 0.00 0.00 2.57
5895 11875 1.837439 TGACAGGGGCTTCATATTCGT 59.163 47.619 0.00 0.00 0.00 3.85
5918 11898 1.579084 CCGATTCGGCGAACCCAAAA 61.579 55.000 26.22 0.00 41.17 2.44
5919 11899 0.453782 CGATTCGGCGAACCCAAAAC 60.454 55.000 26.22 9.22 0.00 2.43
5920 11900 0.109458 GATTCGGCGAACCCAAAACC 60.109 55.000 26.22 3.25 0.00 3.27
5925 11905 1.539280 CGGCGAACCCAAAACCAAAAT 60.539 47.619 0.00 0.00 0.00 1.82
5928 11908 3.006003 GGCGAACCCAAAACCAAAATAGA 59.994 43.478 0.00 0.00 0.00 1.98
5952 11932 1.211969 GCTCGTCGTGCTCTTGGTA 59.788 57.895 11.84 0.00 0.00 3.25
5993 12287 3.357079 CTCTGCCCCACAACGCAC 61.357 66.667 0.00 0.00 0.00 5.34
6003 12297 1.005630 ACAACGCACTGAGAGGAGC 60.006 57.895 0.00 0.00 0.00 4.70
6004 12298 1.005748 CAACGCACTGAGAGGAGCA 60.006 57.895 0.00 0.00 0.00 4.26
6006 12300 0.601311 AACGCACTGAGAGGAGCAAC 60.601 55.000 0.00 0.00 0.00 4.17
6009 12303 0.319728 GCACTGAGAGGAGCAACTCA 59.680 55.000 9.87 0.00 39.97 3.41
6028 12328 4.246458 CTCAACGTTCTTCCCTAGAAAGG 58.754 47.826 0.00 0.00 44.25 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.736325 CCACACTTCCATCGGTCGTC 60.736 60.000 0.00 0.00 0.00 4.20
1 2 1.292223 CCACACTTCCATCGGTCGT 59.708 57.895 0.00 0.00 0.00 4.34
2 3 1.014044 CACCACACTTCCATCGGTCG 61.014 60.000 0.00 0.00 0.00 4.79
3 4 0.673644 CCACCACACTTCCATCGGTC 60.674 60.000 0.00 0.00 0.00 4.79
6 7 0.391661 CCTCCACCACACTTCCATCG 60.392 60.000 0.00 0.00 0.00 3.84
11 12 1.594331 GTGAACCTCCACCACACTTC 58.406 55.000 0.00 0.00 0.00 3.01
12 13 0.179056 CGTGAACCTCCACCACACTT 60.179 55.000 0.00 0.00 33.67 3.16
15 16 1.145156 CACGTGAACCTCCACCACA 59.855 57.895 10.90 0.00 33.67 4.17
17 18 2.110213 GCACGTGAACCTCCACCA 59.890 61.111 22.23 0.00 33.67 4.17
20 21 1.300620 CTTCGCACGTGAACCTCCA 60.301 57.895 22.23 0.00 0.00 3.86
21 22 2.668280 GCTTCGCACGTGAACCTCC 61.668 63.158 22.23 0.00 0.00 4.30
22 23 2.853914 GCTTCGCACGTGAACCTC 59.146 61.111 22.23 0.00 0.00 3.85
25 26 0.785708 CAATCGCTTCGCACGTGAAC 60.786 55.000 22.23 0.56 0.00 3.18
27 28 2.379634 CCAATCGCTTCGCACGTGA 61.380 57.895 22.23 0.00 0.00 4.35
28 29 2.096406 CCAATCGCTTCGCACGTG 59.904 61.111 12.28 12.28 0.00 4.49
30 31 2.182614 AAACCCAATCGCTTCGCACG 62.183 55.000 0.00 0.00 0.00 5.34
32 33 0.886938 TCAAACCCAATCGCTTCGCA 60.887 50.000 0.00 0.00 0.00 5.10
33 34 0.454452 GTCAAACCCAATCGCTTCGC 60.454 55.000 0.00 0.00 0.00 4.70
34 35 0.168128 GGTCAAACCCAATCGCTTCG 59.832 55.000 0.00 0.00 30.04 3.79
55 56 2.127758 GTGCGTGCGTTCCGAAAG 60.128 61.111 0.00 0.00 0.00 2.62
73 74 2.436646 CCACAGGATCACACGGCC 60.437 66.667 0.00 0.00 0.00 6.13
74 75 2.436646 CCCACAGGATCACACGGC 60.437 66.667 0.00 0.00 33.47 5.68
84 85 2.398554 CGGCGTTGAATCCCACAGG 61.399 63.158 0.00 0.00 0.00 4.00
86 87 2.359354 CCGGCGTTGAATCCCACA 60.359 61.111 6.01 0.00 0.00 4.17
87 88 2.046700 TCCGGCGTTGAATCCCAC 60.047 61.111 6.01 0.00 0.00 4.61
91 92 3.861263 GCGGTCCGGCGTTGAATC 61.861 66.667 14.38 0.00 0.00 2.52
108 109 2.606272 GGAAACGTTTATAGCCGACAGG 59.394 50.000 14.65 0.00 41.62 4.00
109 110 2.606272 GGGAAACGTTTATAGCCGACAG 59.394 50.000 14.65 0.00 0.00 3.51
111 112 1.589779 CGGGAAACGTTTATAGCCGAC 59.410 52.381 14.65 0.00 37.93 4.79
123 124 2.808958 CGCCTGCATACGGGAAACG 61.809 63.158 0.00 0.00 46.41 3.60
124 125 3.098555 CGCCTGCATACGGGAAAC 58.901 61.111 0.00 0.00 46.41 2.78
135 136 0.663153 CCCTAAATACTTGCGCCTGC 59.337 55.000 4.18 0.00 43.20 4.85
136 137 2.325583 TCCCTAAATACTTGCGCCTG 57.674 50.000 4.18 0.00 0.00 4.85
137 138 3.359695 TTTCCCTAAATACTTGCGCCT 57.640 42.857 4.18 0.00 0.00 5.52
138 139 4.359706 CATTTTCCCTAAATACTTGCGCC 58.640 43.478 4.18 0.00 34.69 6.53
141 142 6.036470 GTGAGCATTTTCCCTAAATACTTGC 58.964 40.000 0.00 0.00 34.69 4.01
145 146 8.000780 AGAATGTGAGCATTTTCCCTAAATAC 57.999 34.615 0.00 0.00 44.61 1.89
146 147 9.693739 TTAGAATGTGAGCATTTTCCCTAAATA 57.306 29.630 0.00 0.00 44.61 1.40
149 150 8.415950 TTTTAGAATGTGAGCATTTTCCCTAA 57.584 30.769 0.00 0.00 44.61 2.69
151 152 6.916360 TTTTAGAATGTGAGCATTTTCCCT 57.084 33.333 0.00 0.00 44.61 4.20
152 153 7.116805 CACTTTTTAGAATGTGAGCATTTTCCC 59.883 37.037 6.24 0.00 44.61 3.97
153 154 7.867403 TCACTTTTTAGAATGTGAGCATTTTCC 59.133 33.333 9.78 0.00 44.61 3.13
155 156 7.379529 CGTCACTTTTTAGAATGTGAGCATTTT 59.620 33.333 13.11 0.00 45.18 1.82
156 157 6.857964 CGTCACTTTTTAGAATGTGAGCATTT 59.142 34.615 13.11 0.00 45.18 2.32
157 158 6.373779 CGTCACTTTTTAGAATGTGAGCATT 58.626 36.000 13.11 0.00 45.18 3.56
158 159 5.106555 CCGTCACTTTTTAGAATGTGAGCAT 60.107 40.000 13.11 0.00 45.18 3.79
160 161 4.378459 CCCGTCACTTTTTAGAATGTGAGC 60.378 45.833 13.11 8.69 45.18 4.26
163 164 4.994852 TCTCCCGTCACTTTTTAGAATGTG 59.005 41.667 5.85 5.85 40.43 3.21
166 167 5.805728 ACATCTCCCGTCACTTTTTAGAAT 58.194 37.500 0.00 0.00 0.00 2.40
167 168 5.223449 ACATCTCCCGTCACTTTTTAGAA 57.777 39.130 0.00 0.00 0.00 2.10
168 169 4.884668 ACATCTCCCGTCACTTTTTAGA 57.115 40.909 0.00 0.00 0.00 2.10
169 170 4.154195 CCAACATCTCCCGTCACTTTTTAG 59.846 45.833 0.00 0.00 0.00 1.85
174 175 0.321653 GCCAACATCTCCCGTCACTT 60.322 55.000 0.00 0.00 0.00 3.16
175 176 1.194781 AGCCAACATCTCCCGTCACT 61.195 55.000 0.00 0.00 0.00 3.41
176 177 0.321653 AAGCCAACATCTCCCGTCAC 60.322 55.000 0.00 0.00 0.00 3.67
178 179 1.026718 CCAAGCCAACATCTCCCGTC 61.027 60.000 0.00 0.00 0.00 4.79
179 180 1.002134 CCAAGCCAACATCTCCCGT 60.002 57.895 0.00 0.00 0.00 5.28
180 181 1.750399 CCCAAGCCAACATCTCCCG 60.750 63.158 0.00 0.00 0.00 5.14
181 182 0.394899 CTCCCAAGCCAACATCTCCC 60.395 60.000 0.00 0.00 0.00 4.30
182 183 1.034292 GCTCCCAAGCCAACATCTCC 61.034 60.000 0.00 0.00 43.10 3.71
185 186 1.675641 ACGCTCCCAAGCCAACATC 60.676 57.895 0.00 0.00 46.34 3.06
188 189 2.281484 TCACGCTCCCAAGCCAAC 60.281 61.111 0.00 0.00 46.34 3.77
189 190 2.281484 GTCACGCTCCCAAGCCAA 60.281 61.111 0.00 0.00 46.34 4.52
192 193 4.373116 TCGGTCACGCTCCCAAGC 62.373 66.667 0.00 0.00 45.56 4.01
194 195 2.599281 TCTCGGTCACGCTCCCAA 60.599 61.111 0.00 0.00 40.69 4.12
195 196 3.371063 GTCTCGGTCACGCTCCCA 61.371 66.667 0.00 0.00 40.69 4.37
196 197 2.637383 AAGTCTCGGTCACGCTCCC 61.637 63.158 0.00 0.00 40.69 4.30
197 198 1.444553 CAAGTCTCGGTCACGCTCC 60.445 63.158 0.00 0.00 40.69 4.70
199 200 1.581954 CTCAAGTCTCGGTCACGCT 59.418 57.895 0.00 0.00 40.69 5.07
200 201 1.444553 CCTCAAGTCTCGGTCACGC 60.445 63.158 0.00 0.00 40.69 5.34
202 203 3.320673 AATTCCTCAAGTCTCGGTCAC 57.679 47.619 0.00 0.00 0.00 3.67
204 205 3.263261 GGAAATTCCTCAAGTCTCGGTC 58.737 50.000 4.46 0.00 32.53 4.79
205 206 2.353803 CGGAAATTCCTCAAGTCTCGGT 60.354 50.000 10.64 0.00 33.30 4.69
206 207 2.271800 CGGAAATTCCTCAAGTCTCGG 58.728 52.381 10.64 0.00 33.30 4.63
207 208 2.094182 TCCGGAAATTCCTCAAGTCTCG 60.094 50.000 10.64 0.00 33.30 4.04
208 209 3.263261 GTCCGGAAATTCCTCAAGTCTC 58.737 50.000 5.23 0.00 33.30 3.36
212 213 2.000447 GTCGTCCGGAAATTCCTCAAG 59.000 52.381 5.23 0.00 33.30 3.02
213 214 1.338389 GGTCGTCCGGAAATTCCTCAA 60.338 52.381 5.23 0.00 33.30 3.02
214 215 0.248289 GGTCGTCCGGAAATTCCTCA 59.752 55.000 5.23 0.00 33.30 3.86
215 216 3.061093 GGTCGTCCGGAAATTCCTC 57.939 57.895 5.23 0.00 33.30 3.71
281 5589 9.201989 ACCTTCACTTCTTTCCTTTTTCTTTAT 57.798 29.630 0.00 0.00 0.00 1.40
282 5590 8.589701 ACCTTCACTTCTTTCCTTTTTCTTTA 57.410 30.769 0.00 0.00 0.00 1.85
351 5668 2.027625 GGGCGGCTATTTCGATCCG 61.028 63.158 9.56 0.00 44.29 4.18
352 5669 1.070786 TGGGCGGCTATTTCGATCC 59.929 57.895 9.56 0.00 0.00 3.36
353 5670 1.228657 GGTGGGCGGCTATTTCGATC 61.229 60.000 9.56 0.00 0.00 3.69
409 5730 0.680921 GGGCTGCTGTTTGATGGCTA 60.681 55.000 0.00 0.00 0.00 3.93
413 5734 0.389426 GCTTGGGCTGCTGTTTGATG 60.389 55.000 0.00 0.00 35.22 3.07
419 5740 4.223125 TTGGGCTTGGGCTGCTGT 62.223 61.111 0.00 0.00 38.73 4.40
473 5795 0.889306 AAGGAAGGAAGAGACGACGG 59.111 55.000 0.00 0.00 0.00 4.79
476 5798 1.558233 GGGAAGGAAGGAAGAGACGA 58.442 55.000 0.00 0.00 0.00 4.20
677 6037 2.512286 CAGGCACGGCATCGATGT 60.512 61.111 25.47 4.14 40.11 3.06
696 6068 1.409427 GTAAGGGTCAGATGAGGGACG 59.591 57.143 0.00 0.00 34.87 4.79
739 6111 1.603802 CCGAACACAAACAGAGCATGT 59.396 47.619 0.00 0.00 46.97 3.21
751 6123 6.932400 ACAGTGATAAAATAAGACCGAACACA 59.068 34.615 0.00 0.00 0.00 3.72
788 6164 2.664825 GGGATCCAGATCTCTCCCG 58.335 63.158 15.23 0.00 38.15 5.14
794 6170 1.690219 GCGGTGTGGGATCCAGATCT 61.690 60.000 15.23 0.00 37.92 2.75
833 6209 3.457099 GCTTGCTCTAGCTTGCTCT 57.543 52.632 0.00 0.00 42.66 4.09
840 6216 1.078567 AGTGGCAGCTTGCTCTAGC 60.079 57.895 7.85 0.00 44.28 3.42
841 6217 1.367599 GCAGTGGCAGCTTGCTCTAG 61.368 60.000 10.34 0.00 44.28 2.43
842 6218 1.376424 GCAGTGGCAGCTTGCTCTA 60.376 57.895 10.34 0.00 44.28 2.43
843 6219 2.672307 GCAGTGGCAGCTTGCTCT 60.672 61.111 10.34 1.65 44.28 4.09
844 6220 3.745803 GGCAGTGGCAGCTTGCTC 61.746 66.667 12.58 5.38 44.28 4.26
845 6221 4.591399 TGGCAGTGGCAGCTTGCT 62.591 61.111 16.56 0.00 44.28 3.91
853 6229 4.912395 TTGGTGGGTGGCAGTGGC 62.912 66.667 10.30 10.30 40.13 5.01
855 6231 0.540365 AGATTTGGTGGGTGGCAGTG 60.540 55.000 0.00 0.00 0.00 3.66
868 6382 2.253392 GCAGGTTTGCGAGAGATTTG 57.747 50.000 0.00 0.00 41.13 2.32
887 6401 6.754702 AATGTGTGGAAGAGATGATTTCTG 57.245 37.500 0.00 0.00 33.74 3.02
901 6415 6.147492 GCATGCAGAAAATAAAAATGTGTGGA 59.853 34.615 14.21 0.00 0.00 4.02
905 6419 7.946918 CATGCATGCAGAAAATAAAAATGTG 57.053 32.000 26.69 10.01 0.00 3.21
937 6451 2.187946 GTCAGCGACCCTGGGATG 59.812 66.667 22.23 12.19 42.05 3.51
963 6477 4.430137 GCAGAAGCACAAGATGAATTCA 57.570 40.909 11.26 11.26 41.58 2.57
1031 6545 1.456296 GGGAATTTACCGGGTGTCAC 58.544 55.000 10.66 0.00 0.00 3.67
1040 6554 1.097232 CGGTTTCCGGGGAATTTACC 58.903 55.000 0.00 8.98 44.15 2.85
1099 6613 1.276844 GATTGACGCGGCACTATGC 59.723 57.895 18.02 0.00 44.08 3.14
1100 6614 0.809636 TGGATTGACGCGGCACTATG 60.810 55.000 18.02 0.00 0.00 2.23
1101 6615 0.530650 CTGGATTGACGCGGCACTAT 60.531 55.000 18.02 6.45 0.00 2.12
1102 6616 1.153647 CTGGATTGACGCGGCACTA 60.154 57.895 18.02 0.00 0.00 2.74
1103 6617 2.434884 CTGGATTGACGCGGCACT 60.435 61.111 18.02 10.56 0.00 4.40
1104 6618 3.499737 CCTGGATTGACGCGGCAC 61.500 66.667 18.02 3.20 0.00 5.01
1105 6619 4.776322 CCCTGGATTGACGCGGCA 62.776 66.667 12.71 12.71 0.00 5.69
1106 6620 4.778143 ACCCTGGATTGACGCGGC 62.778 66.667 12.47 8.67 0.00 6.53
1107 6621 2.046314 AACCCTGGATTGACGCGG 60.046 61.111 12.47 0.00 0.00 6.46
1114 6628 0.606401 CACGTCAGCAACCCTGGATT 60.606 55.000 0.00 0.00 42.05 3.01
1124 6638 2.611971 GGATTTCACCTACACGTCAGCA 60.612 50.000 0.00 0.00 0.00 4.41
1132 6646 1.002659 CACACGGGGATTTCACCTACA 59.997 52.381 0.00 0.00 37.25 2.74
1133 6647 1.677820 CCACACGGGGATTTCACCTAC 60.678 57.143 0.00 0.00 37.25 3.18
1138 6652 0.768622 AGAACCACACGGGGATTTCA 59.231 50.000 0.00 0.00 42.91 2.69
1144 6658 2.469465 ATCTGCAGAACCACACGGGG 62.469 60.000 22.50 0.00 42.91 5.73
1147 6661 0.667487 ACGATCTGCAGAACCACACG 60.667 55.000 22.50 19.40 0.00 4.49
1169 6683 2.350895 CCAGCCCCACATTGTCGA 59.649 61.111 0.00 0.00 0.00 4.20
1172 6686 3.192630 ACCCCAGCCCCACATTGT 61.193 61.111 0.00 0.00 0.00 2.71
1173 6687 2.681064 CACCCCAGCCCCACATTG 60.681 66.667 0.00 0.00 0.00 2.82
1189 6703 3.835478 TCCTCTTCCTCTTCCTCTTCA 57.165 47.619 0.00 0.00 0.00 3.02
1252 6767 2.163613 GGGAAAAATGATTTCTCGCGGT 59.836 45.455 6.13 0.00 0.00 5.68
1254 6769 3.485947 TGGGAAAAATGATTTCTCGCG 57.514 42.857 0.00 0.00 31.71 5.87
1321 6843 3.751698 AGAACAACAGGAATTTCGCCTAC 59.248 43.478 0.00 0.00 33.51 3.18
1322 6844 3.751175 CAGAACAACAGGAATTTCGCCTA 59.249 43.478 0.00 0.00 33.51 3.93
1338 6860 2.355837 GCGACGACCTGCAGAACA 60.356 61.111 17.39 0.00 0.00 3.18
1353 6875 2.899345 TTCATCCCACATCGTCGGCG 62.899 60.000 1.15 1.15 39.92 6.46
1359 6881 1.536922 CCTCGTCTTCATCCCACATCG 60.537 57.143 0.00 0.00 0.00 3.84
1360 6882 1.757118 TCCTCGTCTTCATCCCACATC 59.243 52.381 0.00 0.00 0.00 3.06
1368 6890 3.380004 GTCATCAGTCTCCTCGTCTTCAT 59.620 47.826 0.00 0.00 0.00 2.57
1369 6891 2.750166 GTCATCAGTCTCCTCGTCTTCA 59.250 50.000 0.00 0.00 0.00 3.02
1375 6897 0.028770 GCTCGTCATCAGTCTCCTCG 59.971 60.000 0.00 0.00 0.00 4.63
1394 6916 4.574828 CCTAGAAATTTACCGGGTGTCATG 59.425 45.833 10.66 0.00 0.00 3.07
1396 6918 3.839490 TCCTAGAAATTTACCGGGTGTCA 59.161 43.478 10.66 0.00 0.00 3.58
1415 6937 6.901081 AAAAATGATTTCTCTCGGTTTCCT 57.099 33.333 0.00 0.00 0.00 3.36
1451 6987 1.945522 CAACCGTGGATCAACGCAA 59.054 52.632 17.53 0.00 42.23 4.85
1557 7124 0.251253 AGGAACGTCCTCGGAACTCT 60.251 55.000 0.00 0.00 45.66 3.24
1576 7143 1.859427 CGTCGTCGGAACTCCCAGAA 61.859 60.000 0.00 0.00 34.14 3.02
1579 7146 2.133742 GAACGTCGTCGGAACTCCCA 62.134 60.000 7.05 0.00 41.85 4.37
1669 7236 2.015456 TGTGACTCACCTCATCCACT 57.985 50.000 6.72 0.00 32.73 4.00
1798 7367 4.388773 CGCTGAAGTAACTTATGCTCAACA 59.611 41.667 0.00 0.00 0.00 3.33
1851 7421 5.664294 TTAACCAAGCGGACACTAGAATA 57.336 39.130 0.00 0.00 35.59 1.75
1882 7452 1.675483 ACGCAGAATTTGAGCAACACA 59.325 42.857 0.00 0.00 0.00 3.72
1904 7474 4.334443 CGCGTCAAAGATTGAATAACAGG 58.666 43.478 0.00 0.00 42.15 4.00
1920 7490 2.991190 GTTTATCAAGAAGACCGCGTCA 59.009 45.455 4.92 0.00 34.60 4.35
1922 7492 1.990563 CGTTTATCAAGAAGACCGCGT 59.009 47.619 4.92 0.00 0.00 6.01
2002 7572 8.542497 AGAAACAGTTAACGTTATGCAGATTA 57.458 30.769 9.18 0.00 0.00 1.75
2017 7587 1.689813 TGTGGCTCGGAGAAACAGTTA 59.310 47.619 9.69 0.00 34.09 2.24
2115 7712 0.722469 CAAGCGCACGACAACATGAC 60.722 55.000 11.47 0.00 0.00 3.06
2162 7771 7.332926 CAGTGCAGTAATGACCTTCATATATCC 59.667 40.741 0.00 0.00 35.76 2.59
2286 7895 2.614481 GGGTAAAACGGCAGATCTGACA 60.614 50.000 27.90 5.33 38.95 3.58
2391 8008 0.961019 CATATGGATTTGGGGTGCGG 59.039 55.000 0.00 0.00 0.00 5.69
2843 8462 6.148150 TGGCTACCTAAAAACATAACTTGTCG 59.852 38.462 0.00 0.00 37.68 4.35
2928 8548 2.988839 AATGCAGGGAGGGGTCAGC 61.989 63.158 0.00 0.00 0.00 4.26
2991 8631 2.470057 AAACAAAAGGAGGCCTGGAA 57.530 45.000 12.00 0.00 32.13 3.53
3026 8666 3.450457 ACCAAATGAACACAAAGCAAGGA 59.550 39.130 0.00 0.00 0.00 3.36
3038 8678 2.147958 TGTACAGGCGACCAAATGAAC 58.852 47.619 0.00 0.00 0.00 3.18
3162 8805 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
3163 8806 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
3164 8807 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
3165 8808 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
3166 8809 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
3167 8810 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
3168 8811 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
3169 8812 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
3170 8813 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
3171 8814 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
3172 8815 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
3173 8816 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
3174 8817 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
3175 8818 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
3176 8819 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
3177 8820 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
3178 8821 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
3179 8822 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
3180 8823 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
3181 8824 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
3182 8825 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
3183 8826 1.692411 AAAAAGGACAGACCCAGTGC 58.308 50.000 0.00 0.00 40.05 4.40
3202 8845 7.990886 CAGTGTGCTATCCTAGGGTAATAAAAA 59.009 37.037 9.46 0.00 0.00 1.94
3203 8846 7.506114 CAGTGTGCTATCCTAGGGTAATAAAA 58.494 38.462 9.46 0.00 0.00 1.52
3204 8847 6.463897 GCAGTGTGCTATCCTAGGGTAATAAA 60.464 42.308 9.46 0.00 40.96 1.40
3205 8848 5.011738 GCAGTGTGCTATCCTAGGGTAATAA 59.988 44.000 9.46 0.00 40.96 1.40
3206 8849 4.527038 GCAGTGTGCTATCCTAGGGTAATA 59.473 45.833 9.46 0.00 40.96 0.98
3207 8850 3.325135 GCAGTGTGCTATCCTAGGGTAAT 59.675 47.826 9.46 0.00 40.96 1.89
3208 8851 2.698797 GCAGTGTGCTATCCTAGGGTAA 59.301 50.000 9.46 0.00 40.96 2.85
3209 8852 2.317040 GCAGTGTGCTATCCTAGGGTA 58.683 52.381 9.46 4.99 40.96 3.69
3210 8853 1.123928 GCAGTGTGCTATCCTAGGGT 58.876 55.000 9.46 3.69 40.96 4.34
3211 8854 1.123077 TGCAGTGTGCTATCCTAGGG 58.877 55.000 9.46 0.00 45.31 3.53
3212 8855 2.988010 TTGCAGTGTGCTATCCTAGG 57.012 50.000 0.82 0.82 45.31 3.02
3213 8856 5.605534 ACTATTTGCAGTGTGCTATCCTAG 58.394 41.667 0.00 0.00 45.31 3.02
3214 8857 5.614324 ACTATTTGCAGTGTGCTATCCTA 57.386 39.130 0.00 0.00 45.31 2.94
3215 8858 4.494091 ACTATTTGCAGTGTGCTATCCT 57.506 40.909 0.00 0.00 45.31 3.24
3216 8859 4.878397 AGAACTATTTGCAGTGTGCTATCC 59.122 41.667 0.00 0.00 45.31 2.59
3217 8860 7.225538 ACATAGAACTATTTGCAGTGTGCTATC 59.774 37.037 0.00 0.00 45.31 2.08
3227 8870 7.275183 AGATGCACTACATAGAACTATTTGCA 58.725 34.615 14.07 14.07 39.84 4.08
3242 8888 7.421530 TGTCAGAAACTTAAAGATGCACTAC 57.578 36.000 0.00 0.00 0.00 2.73
3338 9028 8.807948 ACATGAGTTATACTGCAAATACCTTT 57.192 30.769 0.00 0.00 0.00 3.11
3399 9169 1.221021 GCCCCTAAACAGAGACGGG 59.779 63.158 0.00 0.00 34.62 5.28
3669 9443 4.278170 TGCTGTAAGAATTTGAGGTGGTTG 59.722 41.667 0.00 0.00 34.07 3.77
3875 9649 4.785346 AGGAATACATTCATCAGCAGGT 57.215 40.909 4.45 0.00 38.53 4.00
3897 9671 3.645687 TGGAAATTGTAAAAAGCCCTGCT 59.354 39.130 0.00 0.00 42.56 4.24
3898 9672 3.996363 CTGGAAATTGTAAAAAGCCCTGC 59.004 43.478 0.00 0.00 0.00 4.85
3981 9756 2.869233 TTGAAGGCAGCACTGTTTTC 57.131 45.000 0.00 4.78 0.00 2.29
3993 9768 5.472820 AGCTAGAATCATTAGCATTGAAGGC 59.527 40.000 0.00 0.00 44.65 4.35
4033 9808 2.158711 TCATCAGCCTTCCCACATCATC 60.159 50.000 0.00 0.00 0.00 2.92
4534 10316 3.243975 ACGTCGGTTAACTGGAAGATTGT 60.244 43.478 14.44 0.99 37.43 2.71
4538 10320 2.546373 CCAACGTCGGTTAACTGGAAGA 60.546 50.000 14.44 0.22 33.71 2.87
4651 10433 8.456471 ACCTACAAGTTTTACAAAAACAGAGTC 58.544 33.333 15.43 0.00 32.81 3.36
4738 10521 1.945354 TTTGTCCGGCGCTAGAGAGG 61.945 60.000 7.64 0.00 0.00 3.69
4874 10658 1.892209 TCGGACAGAAAAAGAAGGGC 58.108 50.000 0.00 0.00 0.00 5.19
4875 10659 3.498777 GTCTTCGGACAGAAAAAGAAGGG 59.501 47.826 4.05 0.00 43.91 3.95
5297 11092 1.067582 GGAAGTATCAGGTCGGCGG 59.932 63.158 7.21 0.00 0.00 6.13
5299 11094 0.179081 GGTGGAAGTATCAGGTCGGC 60.179 60.000 0.00 0.00 0.00 5.54
5445 11368 1.077716 GCTATGCAACCGGAACCCT 60.078 57.895 9.46 0.00 0.00 4.34
5454 11378 1.871080 ATGGCGAGTAGCTATGCAAC 58.129 50.000 14.84 0.00 45.74 4.17
5463 11387 3.924918 AGTATGCTACATGGCGAGTAG 57.075 47.619 10.70 10.70 41.41 2.57
5516 11444 5.349543 GGTAGTTTGTTGTATTACCAGTCCG 59.650 44.000 0.00 0.00 35.09 4.79
5528 11456 2.927028 AGCCTTTCGGTAGTTTGTTGT 58.073 42.857 0.00 0.00 0.00 3.32
5529 11457 5.427036 TTTAGCCTTTCGGTAGTTTGTTG 57.573 39.130 0.00 0.00 0.00 3.33
5531 11459 6.644248 AATTTTAGCCTTTCGGTAGTTTGT 57.356 33.333 0.00 0.00 0.00 2.83
5536 11492 6.249035 TGTCAAATTTTAGCCTTTCGGTAG 57.751 37.500 0.00 0.00 0.00 3.18
5540 11496 4.793216 CCGATGTCAAATTTTAGCCTTTCG 59.207 41.667 0.00 0.00 0.00 3.46
5541 11497 5.949735 TCCGATGTCAAATTTTAGCCTTTC 58.050 37.500 0.00 0.00 0.00 2.62
5545 11501 7.595311 AAAATTCCGATGTCAAATTTTAGCC 57.405 32.000 11.21 0.00 39.53 3.93
5552 11508 5.913137 TGCCTAAAATTCCGATGTCAAAT 57.087 34.783 0.00 0.00 0.00 2.32
5553 11509 5.184864 ACATGCCTAAAATTCCGATGTCAAA 59.815 36.000 0.00 0.00 0.00 2.69
5555 11511 4.269183 ACATGCCTAAAATTCCGATGTCA 58.731 39.130 0.00 0.00 0.00 3.58
5556 11512 4.335315 TGACATGCCTAAAATTCCGATGTC 59.665 41.667 0.00 0.00 39.00 3.06
5557 11513 4.269183 TGACATGCCTAAAATTCCGATGT 58.731 39.130 0.00 0.00 0.00 3.06
5558 11514 4.898829 TGACATGCCTAAAATTCCGATG 57.101 40.909 0.00 0.00 0.00 3.84
5560 11516 5.448496 CGATTTGACATGCCTAAAATTCCGA 60.448 40.000 0.00 0.00 0.00 4.55
5561 11517 4.734854 CGATTTGACATGCCTAAAATTCCG 59.265 41.667 0.00 0.00 0.00 4.30
5563 11519 6.806249 TGTTCGATTTGACATGCCTAAAATTC 59.194 34.615 0.00 0.00 0.00 2.17
5570 11526 4.789012 AAATGTTCGATTTGACATGCCT 57.211 36.364 1.37 0.00 0.00 4.75
5577 11534 5.536260 TGCCATGAAAAATGTTCGATTTGA 58.464 33.333 0.00 0.00 0.00 2.69
5614 11571 6.128472 GCTTCAAACTAAATTTGCCATCTTGG 60.128 38.462 0.00 0.00 46.32 3.61
5617 11574 6.100404 TGCTTCAAACTAAATTTGCCATCT 57.900 33.333 0.00 0.00 46.32 2.90
5655 11612 9.860898 GACAAATCTGCCTTAGTTCATATTTTT 57.139 29.630 0.00 0.00 0.00 1.94
5660 11617 6.038603 GCATGACAAATCTGCCTTAGTTCATA 59.961 38.462 0.00 0.00 0.00 2.15
5668 11625 2.799017 TGAGCATGACAAATCTGCCTT 58.201 42.857 0.00 0.00 36.56 4.35
5671 11628 3.844577 AGTTGAGCATGACAAATCTGC 57.155 42.857 0.00 0.00 36.15 4.26
5673 11630 7.229306 TCAAGTTTAGTTGAGCATGACAAATCT 59.771 33.333 0.00 0.00 32.54 2.40
5680 11637 5.412594 GGATGTCAAGTTTAGTTGAGCATGA 59.587 40.000 14.44 0.00 37.12 3.07
5681 11638 5.413833 AGGATGTCAAGTTTAGTTGAGCATG 59.586 40.000 14.44 0.00 37.12 4.06
5699 11659 1.340248 AGTTGTGTTCGTCGAGGATGT 59.660 47.619 8.88 0.00 0.00 3.06
5705 11665 0.460459 TGGCAAGTTGTGTTCGTCGA 60.460 50.000 4.48 0.00 0.00 4.20
5706 11666 0.586319 ATGGCAAGTTGTGTTCGTCG 59.414 50.000 4.48 0.00 0.00 5.12
5708 11668 1.674359 TCATGGCAAGTTGTGTTCGT 58.326 45.000 4.48 0.00 0.00 3.85
5718 11678 4.856115 AACAAACGTTTTTCATGGCAAG 57.144 36.364 11.66 0.00 0.00 4.01
5742 11702 3.366052 AGTCGGATTTTTAGGCATGGT 57.634 42.857 0.00 0.00 0.00 3.55
5762 11722 6.381498 TTTGGACCTGTATATCCAGTGAAA 57.619 37.500 0.00 0.00 45.66 2.69
5874 11834 2.158900 ACGAATATGAAGCCCCTGTCAG 60.159 50.000 0.00 0.00 0.00 3.51
5875 11835 1.837439 ACGAATATGAAGCCCCTGTCA 59.163 47.619 0.00 0.00 0.00 3.58
5876 11836 2.614057 CAACGAATATGAAGCCCCTGTC 59.386 50.000 0.00 0.00 0.00 3.51
5878 11838 2.614057 GACAACGAATATGAAGCCCCTG 59.386 50.000 0.00 0.00 0.00 4.45
5879 11839 2.421529 GGACAACGAATATGAAGCCCCT 60.422 50.000 0.00 0.00 0.00 4.79
5880 11840 1.947456 GGACAACGAATATGAAGCCCC 59.053 52.381 0.00 0.00 0.00 5.80
5908 11888 4.234574 GCTCTATTTTGGTTTTGGGTTCG 58.765 43.478 0.00 0.00 0.00 3.95
5937 11917 2.120232 GATGATACCAAGAGCACGACG 58.880 52.381 0.00 0.00 0.00 5.12
5940 11920 2.748605 GAGGATGATACCAAGAGCACG 58.251 52.381 0.00 0.00 0.00 5.34
5952 11932 2.278857 GTGACGCGCGAGGATGAT 60.279 61.111 39.36 12.67 0.00 2.45
5977 12271 3.872603 AGTGCGTTGTGGGGCAGA 61.873 61.111 0.00 0.00 40.32 4.26
5987 12281 0.601311 GTTGCTCCTCTCAGTGCGTT 60.601 55.000 0.00 0.00 0.00 4.84
5993 12287 1.000283 ACGTTGAGTTGCTCCTCTCAG 60.000 52.381 5.09 0.00 40.91 3.35
6003 12297 4.252971 TCTAGGGAAGAACGTTGAGTTG 57.747 45.455 5.00 0.00 44.35 3.16
6004 12298 5.286267 TTTCTAGGGAAGAACGTTGAGTT 57.714 39.130 5.00 0.00 44.02 3.01
6006 12300 4.021368 TCCTTTCTAGGGAAGAACGTTGAG 60.021 45.833 5.00 0.00 44.02 3.02
6009 12303 4.968971 TTCCTTTCTAGGGAAGAACGTT 57.031 40.909 0.00 0.00 44.02 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.