Multiple sequence alignment - TraesCS3A01G501300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G501300 chr3A 100.000 3632 0 0 1 3632 725462977 725466608 0.000000e+00 6708.0
1 TraesCS3A01G501300 chr3A 94.981 1833 81 5 846 2673 41413437 41415263 0.000000e+00 2865.0
2 TraesCS3A01G501300 chr3A 93.453 1833 109 7 846 2673 723505576 723503750 0.000000e+00 2710.0
3 TraesCS3A01G501300 chr3A 94.538 238 12 1 513 749 41416418 41416655 2.060000e-97 366.0
4 TraesCS3A01G501300 chr3A 92.511 227 5 1 168 382 41412897 41413123 7.570000e-82 315.0
5 TraesCS3A01G501300 chr3A 94.771 153 8 0 2993 3145 223706140 223706292 4.690000e-59 239.0
6 TraesCS3A01G501300 chr3A 97.321 112 3 0 3124 3235 223706233 223706344 1.330000e-44 191.0
7 TraesCS3A01G501300 chr3A 98.333 60 1 0 3124 3183 725466062 725466121 4.960000e-19 106.0
8 TraesCS3A01G501300 chr3A 98.333 60 1 0 3086 3145 725466100 725466159 4.960000e-19 106.0
9 TraesCS3A01G501300 chr2A 99.253 2409 17 1 349 2756 89922417 89924825 0.000000e+00 4348.0
10 TraesCS3A01G501300 chr2A 98.713 2408 23 2 349 2756 89796550 89794151 0.000000e+00 4268.0
11 TraesCS3A01G501300 chr2A 98.978 881 3 2 2758 3632 89924947 89925827 0.000000e+00 1572.0
12 TraesCS3A01G501300 chr2A 97.600 875 3 1 2758 3632 89794029 89793173 0.000000e+00 1483.0
13 TraesCS3A01G501300 chr2A 99.543 219 1 0 1 219 89796783 89796565 2.030000e-107 399.0
14 TraesCS3A01G501300 chr2A 99.543 219 1 0 1 219 89922184 89922402 2.030000e-107 399.0
15 TraesCS3A01G501300 chr2A 95.359 237 10 1 513 749 10260294 10260529 3.420000e-100 375.0
16 TraesCS3A01G501300 chr2A 96.386 83 2 1 2905 2987 404931241 404931160 6.330000e-28 135.0
17 TraesCS3A01G501300 chr2A 98.333 60 1 0 3086 3145 89793681 89793622 4.960000e-19 106.0
18 TraesCS3A01G501300 chr2A 98.333 60 1 0 3124 3183 89793719 89793660 4.960000e-19 106.0
19 TraesCS3A01G501300 chr2A 98.333 60 1 0 3124 3183 89925281 89925340 4.960000e-19 106.0
20 TraesCS3A01G501300 chr2A 98.333 60 1 0 3086 3145 89925319 89925378 4.960000e-19 106.0
21 TraesCS3A01G501300 chr1B 94.728 2371 71 11 405 2756 113090974 113088639 0.000000e+00 3637.0
22 TraesCS3A01G501300 chr1B 92.434 304 10 2 116 406 113091635 113091332 4.340000e-114 422.0
23 TraesCS3A01G501300 chr1B 97.727 44 1 0 763 806 679328761 679328718 3.890000e-10 76.8
24 TraesCS3A01G501300 chr7B 96.708 2187 48 12 574 2756 704056700 704054534 0.000000e+00 3618.0
25 TraesCS3A01G501300 chr7B 95.565 248 8 2 1 245 704057078 704056831 9.450000e-106 394.0
26 TraesCS3A01G501300 chr7B 91.743 109 5 1 2883 2987 704053448 704053340 8.130000e-32 148.0
27 TraesCS3A01G501300 chr7B 100.000 70 0 0 405 474 704056790 704056721 2.940000e-26 130.0
28 TraesCS3A01G501300 chr4B 96.020 2186 62 6 574 2756 487297611 487295448 0.000000e+00 3531.0
29 TraesCS3A01G501300 chr4B 95.565 248 8 2 1 245 487297989 487297742 9.450000e-106 394.0
30 TraesCS3A01G501300 chr4B 90.826 109 6 1 2883 2987 487294370 487294262 3.780000e-30 143.0
31 TraesCS3A01G501300 chr4B 88.991 109 7 2 2883 2987 654111720 654111827 2.940000e-26 130.0
32 TraesCS3A01G501300 chr4B 97.143 70 2 0 405 474 487297701 487297632 6.370000e-23 119.0
33 TraesCS3A01G501300 chr4B 90.909 66 6 0 741 806 401036913 401036978 5.000000e-14 89.8
34 TraesCS3A01G501300 chr6A 95.117 1843 80 6 846 2683 23597814 23599651 0.000000e+00 2896.0
35 TraesCS3A01G501300 chr1A 94.857 1847 84 7 846 2686 540660912 540659071 0.000000e+00 2874.0
36 TraesCS3A01G501300 chr1A 95.359 237 11 0 513 749 540657914 540657678 9.520000e-101 377.0
37 TraesCS3A01G501300 chr1A 92.623 244 8 3 3342 3585 485228952 485229185 3.470000e-90 342.0
38 TraesCS3A01G501300 chr1A 92.511 227 5 1 168 382 540661452 540661226 7.570000e-82 315.0
39 TraesCS3A01G501300 chr1A 95.455 66 3 0 741 806 326408573 326408638 4.960000e-19 106.0
40 TraesCS3A01G501300 chr4A 94.763 1833 85 5 846 2673 449966793 449968619 0.000000e+00 2843.0
41 TraesCS3A01G501300 chr4A 92.478 226 6 1 168 382 449966254 449966479 2.720000e-81 313.0
42 TraesCS3A01G501300 chr5B 97.570 535 6 1 1 528 9576019 9575485 0.000000e+00 909.0
43 TraesCS3A01G501300 chr5B 100.000 47 0 0 211 257 103635736 103635690 1.800000e-13 87.9
44 TraesCS3A01G501300 chr5B 95.238 42 2 0 257 298 595689103 595689062 2.340000e-07 67.6
45 TraesCS3A01G501300 chr3B 94.524 420 9 3 1 406 69990423 69990842 1.420000e-178 636.0
46 TraesCS3A01G501300 chr3B 95.288 382 17 1 3251 3632 397230785 397230405 4.010000e-169 604.0
47 TraesCS3A01G501300 chr3B 94.503 382 15 3 3251 3632 378456081 378456456 5.230000e-163 584.0
48 TraesCS3A01G501300 chr2B 96.606 383 11 2 3251 3632 488013582 488013201 5.120000e-178 634.0
49 TraesCS3A01G501300 chr2B 96.364 55 2 0 420 474 411697443 411697389 1.390000e-14 91.6
50 TraesCS3A01G501300 chr3D 94.241 382 16 3 3251 3632 284820505 284820130 2.430000e-161 579.0
51 TraesCS3A01G501300 chr1D 94.984 319 10 2 3314 3632 385129611 385129923 2.520000e-136 496.0
52 TraesCS3A01G501300 chr1D 100.000 33 0 0 487 519 442084758 442084790 1.090000e-05 62.1
53 TraesCS3A01G501300 chrUn 99.543 219 1 0 1 219 362020917 362020699 2.030000e-107 399.0
54 TraesCS3A01G501300 chrUn 100.000 36 0 0 257 292 352142101 352142136 2.340000e-07 67.6
55 TraesCS3A01G501300 chr7A 95.359 237 11 0 513 749 582034677 582034913 9.520000e-101 377.0
56 TraesCS3A01G501300 chr7A 91.743 109 5 1 2883 2987 582035232 582035340 8.130000e-32 148.0
57 TraesCS3A01G501300 chr7A 100.000 36 0 0 257 292 5204570 5204605 2.340000e-07 67.6
58 TraesCS3A01G501300 chr6D 94.767 172 8 1 1 171 272761018 272761189 2.150000e-67 267.0
59 TraesCS3A01G501300 chr6D 100.000 28 0 0 3344 3371 15096327 15096354 7.000000e-03 52.8
60 TraesCS3A01G501300 chr5D 94.928 138 7 0 1 138 313817199 313817336 2.200000e-52 217.0
61 TraesCS3A01G501300 chr6B 90.826 109 5 2 2883 2987 481018044 481018151 1.360000e-29 141.0
62 TraesCS3A01G501300 chr6B 97.826 46 1 0 3172 3217 634998967 634999012 3.010000e-11 80.5
63 TraesCS3A01G501300 chr7D 84.516 155 5 6 405 540 55216399 55216245 6.330000e-28 135.0
64 TraesCS3A01G501300 chr5A 89.908 109 6 2 2883 2987 2101508 2101615 6.330000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G501300 chr3A 725462977 725466608 3631 False 2306.666667 6708 98.888667 1 3632 3 chr3A.!!$F3 3631
1 TraesCS3A01G501300 chr3A 723503750 723505576 1826 True 2710.000000 2710 93.453000 846 2673 1 chr3A.!!$R1 1827
2 TraesCS3A01G501300 chr3A 41412897 41416655 3758 False 1182.000000 2865 94.010000 168 2673 3 chr3A.!!$F1 2505
3 TraesCS3A01G501300 chr2A 89922184 89925827 3643 False 1306.200000 4348 98.888000 1 3632 5 chr2A.!!$F2 3631
4 TraesCS3A01G501300 chr2A 89793173 89796783 3610 True 1272.400000 4268 98.504400 1 3632 5 chr2A.!!$R2 3631
5 TraesCS3A01G501300 chr1B 113088639 113091635 2996 True 2029.500000 3637 93.581000 116 2756 2 chr1B.!!$R2 2640
6 TraesCS3A01G501300 chr7B 704053340 704057078 3738 True 1072.500000 3618 96.004000 1 2987 4 chr7B.!!$R1 2986
7 TraesCS3A01G501300 chr4B 487294262 487297989 3727 True 1046.750000 3531 94.888500 1 2987 4 chr4B.!!$R1 2986
8 TraesCS3A01G501300 chr6A 23597814 23599651 1837 False 2896.000000 2896 95.117000 846 2683 1 chr6A.!!$F1 1837
9 TraesCS3A01G501300 chr1A 540657678 540661452 3774 True 1188.666667 2874 94.242333 168 2686 3 chr1A.!!$R1 2518
10 TraesCS3A01G501300 chr4A 449966254 449968619 2365 False 1578.000000 2843 93.620500 168 2673 2 chr4A.!!$F1 2505
11 TraesCS3A01G501300 chr5B 9575485 9576019 534 True 909.000000 909 97.570000 1 528 1 chr5B.!!$R1 527
12 TraesCS3A01G501300 chr7A 582034677 582035340 663 False 262.500000 377 93.551000 513 2987 2 chr7A.!!$F2 2474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 338 7.502226 AGACTTCAAATGTTAATGTCAGGTTCA 59.498 33.333 0.0 0.0 0.0 3.18 F
1055 1541 3.185391 GGAACTCAAGAAGAACAAGCTCG 59.815 47.826 0.0 0.0 0.0 5.03 F
1079 1565 4.437390 GCAGGGTGACGTTATTGATTTGAG 60.437 45.833 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 2344 1.971357 ACTCTTCACTCGGGTCATGTT 59.029 47.619 0.0 0.0 0.00 2.71 R
2537 3050 2.423892 TCTCCAGCATTCTGTAGACGTC 59.576 50.000 7.7 7.7 38.66 4.34 R
2634 3147 6.016555 TCCCTTTCTTTTTCCTTTCCCTATG 58.983 40.000 0.0 0.0 0.00 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
305 307 7.867305 TGTTGTTTAGTTAATGTCAGGTTCA 57.133 32.000 0.00 0.00 0.00 3.18
306 308 8.282455 TGTTGTTTAGTTAATGTCAGGTTCAA 57.718 30.769 0.00 0.00 0.00 2.69
307 309 8.740906 TGTTGTTTAGTTAATGTCAGGTTCAAA 58.259 29.630 0.00 0.00 0.00 2.69
308 310 9.575783 GTTGTTTAGTTAATGTCAGGTTCAAAA 57.424 29.630 0.00 0.00 0.00 2.44
315 317 9.574516 AGTTAATGTCAGGTTCAAAATAGACTT 57.425 29.630 0.00 0.00 0.00 3.01
316 318 9.827411 GTTAATGTCAGGTTCAAAATAGACTTC 57.173 33.333 0.00 0.00 0.00 3.01
317 319 9.567776 TTAATGTCAGGTTCAAAATAGACTTCA 57.432 29.630 0.00 0.00 0.00 3.02
318 320 8.463930 AATGTCAGGTTCAAAATAGACTTCAA 57.536 30.769 0.00 0.00 0.00 2.69
319 321 7.873719 TGTCAGGTTCAAAATAGACTTCAAA 57.126 32.000 0.00 0.00 0.00 2.69
320 322 8.463930 TGTCAGGTTCAAAATAGACTTCAAAT 57.536 30.769 0.00 0.00 0.00 2.32
321 323 8.352201 TGTCAGGTTCAAAATAGACTTCAAATG 58.648 33.333 0.00 0.00 0.00 2.32
322 324 8.352942 GTCAGGTTCAAAATAGACTTCAAATGT 58.647 33.333 0.00 0.00 0.00 2.71
323 325 8.912988 TCAGGTTCAAAATAGACTTCAAATGTT 58.087 29.630 0.00 0.00 0.00 2.71
333 335 9.520515 AATAGACTTCAAATGTTAATGTCAGGT 57.479 29.630 0.00 0.00 0.00 4.00
334 336 7.823745 AGACTTCAAATGTTAATGTCAGGTT 57.176 32.000 0.00 0.00 0.00 3.50
335 337 7.875971 AGACTTCAAATGTTAATGTCAGGTTC 58.124 34.615 0.00 0.00 0.00 3.62
336 338 7.502226 AGACTTCAAATGTTAATGTCAGGTTCA 59.498 33.333 0.00 0.00 0.00 3.18
337 339 8.181904 ACTTCAAATGTTAATGTCAGGTTCAT 57.818 30.769 0.00 0.00 0.00 2.57
338 340 8.641541 ACTTCAAATGTTAATGTCAGGTTCATT 58.358 29.630 0.00 0.00 38.72 2.57
339 341 9.480053 CTTCAAATGTTAATGTCAGGTTCATTT 57.520 29.630 0.00 0.00 36.92 2.32
340 342 9.829507 TTCAAATGTTAATGTCAGGTTCATTTT 57.170 25.926 0.00 0.00 36.92 1.82
345 347 8.918202 TGTTAATGTCAGGTTCATTTTACTCT 57.082 30.769 0.00 0.00 36.92 3.24
352 354 9.567776 TGTCAGGTTCATTTTACTCTAAATTGA 57.432 29.630 0.00 0.00 36.69 2.57
528 977 9.651913 AGTAGCAAAAAGTTTCAGAAATTTTGA 57.348 25.926 25.64 12.12 40.82 2.69
1055 1541 3.185391 GGAACTCAAGAAGAACAAGCTCG 59.815 47.826 0.00 0.00 0.00 5.03
1079 1565 4.437390 GCAGGGTGACGTTATTGATTTGAG 60.437 45.833 0.00 0.00 0.00 3.02
1855 2344 6.455647 GTCCACATCGATGAGAAATGGTATA 58.544 40.000 31.33 9.64 38.44 1.47
2537 3050 1.526686 TGCCGCATCTGCATAAGGG 60.527 57.895 2.72 0.00 42.21 3.95
2629 3142 7.147672 CCAAGGCCATTATAGAACAAGGAAATT 60.148 37.037 5.01 0.00 0.00 1.82
2756 3447 5.997129 TCTTGTGTATGTCATGTGTCATGTT 59.003 36.000 9.13 0.68 0.00 2.71
2816 3531 7.961326 AGCTAGATCTTCTTCTTCTTCTTCT 57.039 36.000 0.00 0.00 0.00 2.85
2817 3532 8.366359 AGCTAGATCTTCTTCTTCTTCTTCTT 57.634 34.615 0.00 0.00 0.00 2.52
2818 3533 8.470002 AGCTAGATCTTCTTCTTCTTCTTCTTC 58.530 37.037 0.00 0.00 0.00 2.87
2819 3534 8.470002 GCTAGATCTTCTTCTTCTTCTTCTTCT 58.530 37.037 0.00 0.00 0.00 2.85
2822 3537 9.093458 AGATCTTCTTCTTCTTCTTCTTCTTCT 57.907 33.333 0.00 0.00 0.00 2.85
2823 3538 9.710900 GATCTTCTTCTTCTTCTTCTTCTTCTT 57.289 33.333 0.00 0.00 0.00 2.52
2824 3539 9.710900 ATCTTCTTCTTCTTCTTCTTCTTCTTC 57.289 33.333 0.00 0.00 0.00 2.87
2825 3540 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2826 3541 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2827 3542 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2828 3543 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2836 3551 9.898152 TTCTTCTTCTTCTTCTTCTTCTTCTTT 57.102 29.630 0.00 0.00 0.00 2.52
2887 5537 1.765314 CTCCAGTAGCTAGGCCACATT 59.235 52.381 5.01 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 291 9.574516 AAGTCTATTTTGAACCTGACATTAACT 57.425 29.630 0.00 0.0 0.00 2.24
290 292 9.827411 GAAGTCTATTTTGAACCTGACATTAAC 57.173 33.333 0.00 0.0 0.00 2.01
291 293 9.567776 TGAAGTCTATTTTGAACCTGACATTAA 57.432 29.630 0.00 0.0 0.00 1.40
292 294 9.567776 TTGAAGTCTATTTTGAACCTGACATTA 57.432 29.630 0.00 0.0 0.00 1.90
293 295 8.463930 TTGAAGTCTATTTTGAACCTGACATT 57.536 30.769 0.00 0.0 0.00 2.71
294 296 8.463930 TTTGAAGTCTATTTTGAACCTGACAT 57.536 30.769 0.00 0.0 0.00 3.06
295 297 7.873719 TTTGAAGTCTATTTTGAACCTGACA 57.126 32.000 0.00 0.0 0.00 3.58
296 298 8.352942 ACATTTGAAGTCTATTTTGAACCTGAC 58.647 33.333 0.00 0.0 0.00 3.51
297 299 8.463930 ACATTTGAAGTCTATTTTGAACCTGA 57.536 30.769 0.00 0.0 0.00 3.86
307 309 9.520515 ACCTGACATTAACATTTGAAGTCTATT 57.479 29.630 0.00 0.0 0.00 1.73
308 310 9.520515 AACCTGACATTAACATTTGAAGTCTAT 57.479 29.630 0.00 0.0 0.00 1.98
309 311 8.918202 AACCTGACATTAACATTTGAAGTCTA 57.082 30.769 0.00 0.0 0.00 2.59
310 312 7.502226 TGAACCTGACATTAACATTTGAAGTCT 59.498 33.333 0.00 0.0 0.00 3.24
311 313 7.648142 TGAACCTGACATTAACATTTGAAGTC 58.352 34.615 0.00 0.0 0.00 3.01
312 314 7.581213 TGAACCTGACATTAACATTTGAAGT 57.419 32.000 0.00 0.0 0.00 3.01
313 315 9.480053 AAATGAACCTGACATTAACATTTGAAG 57.520 29.630 0.00 0.0 37.04 3.02
314 316 9.829507 AAAATGAACCTGACATTAACATTTGAA 57.170 25.926 0.00 0.0 37.04 2.69
319 321 9.520515 AGAGTAAAATGAACCTGACATTAACAT 57.479 29.630 0.00 0.0 37.04 2.71
320 322 8.918202 AGAGTAAAATGAACCTGACATTAACA 57.082 30.769 0.00 0.0 37.04 2.41
326 328 9.567776 TCAATTTAGAGTAAAATGAACCTGACA 57.432 29.630 0.00 0.0 35.34 3.58
329 331 9.294030 GCATCAATTTAGAGTAAAATGAACCTG 57.706 33.333 2.21 0.0 39.98 4.00
330 332 9.023962 TGCATCAATTTAGAGTAAAATGAACCT 57.976 29.630 2.21 0.0 39.98 3.50
331 333 9.807649 ATGCATCAATTTAGAGTAAAATGAACC 57.192 29.630 0.00 0.0 39.98 3.62
337 339 9.844790 CACTGAATGCATCAATTTAGAGTAAAA 57.155 29.630 0.00 0.0 37.67 1.52
338 340 9.013229 ACACTGAATGCATCAATTTAGAGTAAA 57.987 29.630 0.00 0.0 37.67 2.01
339 341 8.453320 CACACTGAATGCATCAATTTAGAGTAA 58.547 33.333 0.00 0.0 37.67 2.24
340 342 7.607607 ACACACTGAATGCATCAATTTAGAGTA 59.392 33.333 0.00 0.0 37.67 2.59
341 343 6.432162 ACACACTGAATGCATCAATTTAGAGT 59.568 34.615 0.00 0.0 37.67 3.24
342 344 6.849502 ACACACTGAATGCATCAATTTAGAG 58.150 36.000 0.00 0.0 37.67 2.43
343 345 6.822667 ACACACTGAATGCATCAATTTAGA 57.177 33.333 0.00 0.0 37.67 2.10
344 346 7.977904 TCTACACACTGAATGCATCAATTTAG 58.022 34.615 0.00 0.0 37.67 1.85
345 347 7.920160 TCTACACACTGAATGCATCAATTTA 57.080 32.000 0.00 0.0 37.67 1.40
346 348 6.822667 TCTACACACTGAATGCATCAATTT 57.177 33.333 0.00 0.0 37.67 1.82
347 349 6.600427 TGATCTACACACTGAATGCATCAATT 59.400 34.615 0.00 0.0 37.67 2.32
348 350 6.117488 TGATCTACACACTGAATGCATCAAT 58.883 36.000 0.00 0.0 37.67 2.57
349 351 5.490159 TGATCTACACACTGAATGCATCAA 58.510 37.500 0.00 0.0 37.67 2.57
350 352 5.088680 TGATCTACACACTGAATGCATCA 57.911 39.130 0.00 0.0 36.38 3.07
351 353 5.178996 GGATGATCTACACACTGAATGCATC 59.821 44.000 0.00 0.0 0.00 3.91
352 354 5.061853 GGATGATCTACACACTGAATGCAT 58.938 41.667 0.00 0.0 0.00 3.96
528 977 1.684248 GCCAAGATGGAAGGTGAGCAT 60.684 52.381 0.00 0.0 40.96 3.79
1055 1541 2.038387 ATCAATAACGTCACCCTGCC 57.962 50.000 0.00 0.0 0.00 4.85
1079 1565 1.740025 CCTCCTCTTTCGGCATCAAAC 59.260 52.381 0.00 0.0 0.00 2.93
1855 2344 1.971357 ACTCTTCACTCGGGTCATGTT 59.029 47.619 0.00 0.0 0.00 2.71
2537 3050 2.423892 TCTCCAGCATTCTGTAGACGTC 59.576 50.000 7.70 7.7 38.66 4.34
2629 3142 9.734984 CTTTCTTTTTCCTTTCCCTATGTACTA 57.265 33.333 0.00 0.0 0.00 1.82
2634 3147 6.016555 TCCCTTTCTTTTTCCTTTCCCTATG 58.983 40.000 0.00 0.0 0.00 2.23
2713 3226 6.813152 CACAAGACATACACATGACATACTCA 59.187 38.462 0.00 0.0 35.96 3.41
2817 3532 9.898152 AGAAGAAAAAGAAGAAGAAGAAGAAGA 57.102 29.630 0.00 0.0 0.00 2.87
2820 3535 9.898152 AGAAGAAGAAAAAGAAGAAGAAGAAGA 57.102 29.630 0.00 0.0 0.00 2.87
2887 5537 9.219603 CATCAAGTTTAGGAACATTTGTCTCTA 57.780 33.333 0.00 0.0 38.26 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.