Multiple sequence alignment - TraesCS3A01G500700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G500700 chr3A 100.000 4602 0 0 1 4602 724903915 724899314 0.000000e+00 8499.0
1 TraesCS3A01G500700 chr3A 82.581 310 51 3 4293 4601 443344367 443344060 2.110000e-68 270.0
2 TraesCS3A01G500700 chr3B 91.368 2989 102 67 965 3845 797646265 797643325 0.000000e+00 3947.0
3 TraesCS3A01G500700 chr3B 94.388 784 17 14 3844 4602 797643241 797642460 0.000000e+00 1179.0
4 TraesCS3A01G500700 chr3B 73.632 1206 196 70 2943 4057 797218820 797219994 2.040000e-93 353.0
5 TraesCS3A01G500700 chr3B 92.899 169 8 2 361 525 797646539 797646371 4.600000e-60 243.0
6 TraesCS3A01G500700 chr3B 95.652 92 4 0 783 874 797646365 797646274 1.030000e-31 148.0
7 TraesCS3A01G500700 chr3B 93.407 91 6 0 687 777 158717307 158717217 8.030000e-28 135.0
8 TraesCS3A01G500700 chr3B 92.553 94 7 0 684 777 754856267 754856174 8.030000e-28 135.0
9 TraesCS3A01G500700 chr3B 90.566 53 3 1 4107 4159 728502898 728502948 8.260000e-08 69.4
10 TraesCS3A01G500700 chr3B 100.000 31 0 0 1446 1476 797645707 797645677 1.790000e-04 58.4
11 TraesCS3A01G500700 chr3D 76.679 1072 153 56 2886 3896 594177922 594178957 5.310000e-139 505.0
12 TraesCS3A01G500700 chr3D 88.000 50 4 1 4107 4156 382751657 382751704 1.790000e-04 58.4
13 TraesCS3A01G500700 chr1B 82.911 474 70 5 2 470 305313043 305313510 2.560000e-112 416.0
14 TraesCS3A01G500700 chr1A 81.395 473 76 11 76 540 266181930 266181462 4.350000e-100 375.0
15 TraesCS3A01G500700 chr1A 83.226 310 47 4 4292 4599 399505328 399505022 3.510000e-71 279.0
16 TraesCS3A01G500700 chr1A 97.368 38 1 0 4251 4288 558981922 558981959 1.070000e-06 65.8
17 TraesCS3A01G500700 chr1A 100.000 30 0 0 4259 4288 394877933 394877904 6.430000e-04 56.5
18 TraesCS3A01G500700 chr2B 88.462 312 28 4 4293 4601 350303940 350304246 2.020000e-98 370.0
19 TraesCS3A01G500700 chr2B 94.505 91 5 0 687 777 638968709 638968619 1.730000e-29 141.0
20 TraesCS3A01G500700 chrUn 82.423 421 68 5 6 421 25038022 25037603 3.380000e-96 363.0
21 TraesCS3A01G500700 chrUn 79.274 468 83 12 15 470 28633801 28634266 9.610000e-82 315.0
22 TraesCS3A01G500700 chrUn 92.553 94 7 0 684 777 40878220 40878313 8.030000e-28 135.0
23 TraesCS3A01G500700 chrUn 92.553 94 7 0 684 777 310312488 310312395 8.030000e-28 135.0
24 TraesCS3A01G500700 chrUn 92.553 94 7 0 684 777 315277891 315277984 8.030000e-28 135.0
25 TraesCS3A01G500700 chrUn 97.143 35 1 0 4254 4288 2428161 2428195 4.970000e-05 60.2
26 TraesCS3A01G500700 chr5B 82.619 420 61 7 12 421 701206707 701206290 1.220000e-95 361.0
27 TraesCS3A01G500700 chr5B 83.646 373 55 6 6 373 491883238 491882867 3.410000e-91 346.0
28 TraesCS3A01G500700 chr1D 82.339 419 64 4 6 421 472336051 472335640 5.660000e-94 355.0
29 TraesCS3A01G500700 chr1D 85.342 307 42 3 4295 4599 318381806 318381501 9.610000e-82 315.0
30 TraesCS3A01G500700 chr1D 83.824 68 6 5 4107 4174 379476214 379476276 4.970000e-05 60.2
31 TraesCS3A01G500700 chr7D 78.843 553 93 19 6 544 107796598 107797140 7.330000e-93 351.0
32 TraesCS3A01G500700 chr7D 93.407 91 6 0 687 777 426778563 426778653 8.030000e-28 135.0
33 TraesCS3A01G500700 chr7D 100.000 41 0 0 548 588 435460747 435460787 4.940000e-10 76.8
34 TraesCS3A01G500700 chr2D 80.974 431 65 11 6 421 478696747 478696319 4.440000e-85 326.0
35 TraesCS3A01G500700 chr7A 84.014 294 44 2 4295 4586 185922024 185921732 3.510000e-71 279.0
36 TraesCS3A01G500700 chr7A 93.407 91 6 0 687 777 700533233 700533323 8.030000e-28 135.0
37 TraesCS3A01G500700 chr2A 82.143 336 50 8 212 541 642926729 642927060 3.510000e-71 279.0
38 TraesCS3A01G500700 chr2A 91.304 46 4 0 548 593 72514115 72514070 3.840000e-06 63.9
39 TraesCS3A01G500700 chr5D 84.099 283 42 2 4293 4572 520124461 520124179 2.110000e-68 270.0
40 TraesCS3A01G500700 chr4D 82.428 313 45 9 4292 4601 357262427 357262122 9.820000e-67 265.0
41 TraesCS3A01G500700 chr4B 81.788 302 54 1 4292 4592 320323140 320322839 7.640000e-63 252.0
42 TraesCS3A01G500700 chr5A 95.604 91 4 0 687 777 512233469 512233559 3.710000e-31 147.0
43 TraesCS3A01G500700 chr5A 100.000 30 0 0 4127 4156 600445156 600445127 6.430000e-04 56.5
44 TraesCS3A01G500700 chr4A 93.023 43 1 2 4121 4163 459666400 459666360 1.380000e-05 62.1
45 TraesCS3A01G500700 chr4A 100.000 29 0 0 4128 4156 242896654 242896626 2.000000e-03 54.7
46 TraesCS3A01G500700 chr7B 92.105 38 3 0 4120 4157 724467324 724467361 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G500700 chr3A 724899314 724903915 4601 True 8499.00 8499 100.0000 1 4602 1 chr3A.!!$R2 4601
1 TraesCS3A01G500700 chr3B 797642460 797646539 4079 True 1115.08 3947 94.8614 361 4602 5 chr3B.!!$R3 4241
2 TraesCS3A01G500700 chr3B 797218820 797219994 1174 False 353.00 353 73.6320 2943 4057 1 chr3B.!!$F2 1114
3 TraesCS3A01G500700 chr3D 594177922 594178957 1035 False 505.00 505 76.6790 2886 3896 1 chr3D.!!$F2 1010
4 TraesCS3A01G500700 chr7D 107796598 107797140 542 False 351.00 351 78.8430 6 544 1 chr7D.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 153 0.039911 AGAAGGACCGCCTACTCTGT 59.960 55.0 0.00 0.00 46.28 3.41 F
1198 1229 0.036765 GCGAGGGTCAACATGTGGTA 60.037 55.0 0.00 0.00 0.00 3.25 F
1589 1721 0.178921 AACTGGGGACTCTGCTCTCA 60.179 55.0 0.00 0.00 0.00 3.27 F
2040 2190 0.402504 TCGTACAAAGTTGGGCCCAT 59.597 50.0 29.23 12.68 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1647 0.251787 AAAGGGACATGGAGTTGGCC 60.252 55.000 0.0 0.0 44.81 5.36 R
2124 2274 2.012673 CAACTTGGATAGCAGCAGGAC 58.987 52.381 0.0 0.0 0.00 3.85 R
3556 3795 0.317479 GACACTTGCTGGGAGTACGT 59.683 55.000 0.0 0.0 0.00 3.57 R
3952 4329 0.978146 TCCCTCCAAGACTAGCCTGC 60.978 60.000 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 2.203015 GCCTCCGCCGCAAGAATA 60.203 61.111 0.00 0.00 43.02 1.75
49 51 1.312371 GCCGCAAGAATACCAAGGCA 61.312 55.000 0.00 0.00 42.37 4.75
54 56 3.084786 GCAAGAATACCAAGGCACTCTT 58.915 45.455 0.00 0.00 38.49 2.85
65 67 0.175760 GGCACTCTTACTCGCCATCA 59.824 55.000 0.00 0.00 44.25 3.07
71 73 2.346803 TCTTACTCGCCATCAAGTTGC 58.653 47.619 0.00 0.00 0.00 4.17
74 76 1.741401 CTCGCCATCAAGTTGCCGA 60.741 57.895 0.00 3.20 0.00 5.54
77 79 1.153958 GCCATCAAGTTGCCGAAGC 60.154 57.895 0.00 0.00 40.48 3.86
79 81 1.512734 CATCAAGTTGCCGAAGCGC 60.513 57.895 0.00 0.00 44.31 5.92
94 96 2.863153 CGCGAGGCAAACAAGGAG 59.137 61.111 0.00 0.00 0.00 3.69
98 100 2.282462 AGGCAAACAAGGAGGCGG 60.282 61.111 0.00 0.00 0.00 6.13
100 102 4.404654 GCAAACAAGGAGGCGGCG 62.405 66.667 0.51 0.51 0.00 6.46
101 103 3.737172 CAAACAAGGAGGCGGCGG 61.737 66.667 9.78 0.00 0.00 6.13
105 107 4.467084 CAAGGAGGCGGCGGCTAA 62.467 66.667 36.29 0.00 38.98 3.09
145 147 1.035932 CGAAGGAGAAGGACCGCCTA 61.036 60.000 0.00 0.00 46.28 3.93
149 151 0.396001 GGAGAAGGACCGCCTACTCT 60.396 60.000 0.00 0.00 46.28 3.24
151 153 0.039911 AGAAGGACCGCCTACTCTGT 59.960 55.000 0.00 0.00 46.28 3.41
171 173 4.362476 GCTTGCGGGCCAAAGGTG 62.362 66.667 15.58 0.00 31.94 4.00
172 174 2.597217 CTTGCGGGCCAAAGGTGA 60.597 61.111 4.39 0.00 31.94 4.02
178 180 1.075659 GGGCCAAAGGTGAAGCTCT 59.924 57.895 4.39 0.00 0.00 4.09
179 181 0.328258 GGGCCAAAGGTGAAGCTCTA 59.672 55.000 4.39 0.00 0.00 2.43
184 186 3.339141 CCAAAGGTGAAGCTCTAACTCC 58.661 50.000 0.00 0.00 0.00 3.85
185 187 2.996621 CAAAGGTGAAGCTCTAACTCCG 59.003 50.000 0.00 0.00 0.00 4.63
187 189 1.819903 AGGTGAAGCTCTAACTCCGAC 59.180 52.381 0.00 0.00 0.00 4.79
213 215 3.322466 CGGCTCCACCTCCACCTT 61.322 66.667 0.00 0.00 35.61 3.50
216 218 2.283529 GCTCCACCTCCACCTTCGA 61.284 63.158 0.00 0.00 0.00 3.71
220 222 1.080705 CACCTCCACCTTCGACGAC 60.081 63.158 0.00 0.00 0.00 4.34
251 254 4.508128 CGCCGACGCCTACATGGT 62.508 66.667 0.00 0.00 38.35 3.55
326 329 1.152943 GATTTCCTCCGCCCTTCCC 60.153 63.158 0.00 0.00 0.00 3.97
332 336 2.607134 TCCGCCCTTCCCCGTTTA 60.607 61.111 0.00 0.00 0.00 2.01
338 342 2.292292 CGCCCTTCCCCGTTTATTTATG 59.708 50.000 0.00 0.00 0.00 1.90
345 349 8.479689 CCCTTCCCCGTTTATTTATGTTTTATT 58.520 33.333 0.00 0.00 0.00 1.40
346 350 9.878667 CCTTCCCCGTTTATTTATGTTTTATTT 57.121 29.630 0.00 0.00 0.00 1.40
470 479 4.093703 TGGTGTTTATACATAGCGTTGCAC 59.906 41.667 0.00 0.00 36.50 4.57
484 497 1.045911 TTGCACAGGTTTGGGGTTCC 61.046 55.000 0.00 0.00 0.00 3.62
510 523 1.153349 GGGACGTGGATGAGGAAGC 60.153 63.158 0.00 0.00 0.00 3.86
515 531 2.930682 GACGTGGATGAGGAAGCTAAAC 59.069 50.000 0.00 0.00 0.00 2.01
528 544 4.635765 GGAAGCTAAACTATGATGTGTGCA 59.364 41.667 0.00 0.00 0.00 4.57
529 545 5.297776 GGAAGCTAAACTATGATGTGTGCAT 59.702 40.000 0.00 0.00 38.18 3.96
544 560 4.758251 CATGGTCAGTGCCCGCGA 62.758 66.667 8.23 0.00 0.00 5.87
545 561 4.015406 ATGGTCAGTGCCCGCGAA 62.015 61.111 8.23 0.00 0.00 4.70
546 562 3.329542 ATGGTCAGTGCCCGCGAAT 62.330 57.895 8.23 0.00 0.00 3.34
547 563 3.499737 GGTCAGTGCCCGCGAATG 61.500 66.667 8.23 0.00 0.00 2.67
548 564 4.166011 GTCAGTGCCCGCGAATGC 62.166 66.667 8.23 8.13 37.91 3.56
558 574 3.156334 GCGAATGCGGGCGTATAG 58.844 61.111 0.00 0.00 38.16 1.31
559 575 1.372499 GCGAATGCGGGCGTATAGA 60.372 57.895 0.00 0.00 38.16 1.98
560 576 1.344942 GCGAATGCGGGCGTATAGAG 61.345 60.000 0.00 0.00 38.16 2.43
561 577 0.732880 CGAATGCGGGCGTATAGAGG 60.733 60.000 0.00 0.00 0.00 3.69
562 578 0.389948 GAATGCGGGCGTATAGAGGG 60.390 60.000 0.00 0.00 0.00 4.30
563 579 2.450479 AATGCGGGCGTATAGAGGGC 62.450 60.000 0.00 0.00 35.38 5.19
567 583 4.192950 GGCGTATAGAGGGCCAGA 57.807 61.111 6.18 0.00 46.13 3.86
568 584 2.672414 GGCGTATAGAGGGCCAGAT 58.328 57.895 6.18 0.00 46.13 2.90
569 585 0.977395 GGCGTATAGAGGGCCAGATT 59.023 55.000 6.18 0.00 46.13 2.40
570 586 1.348036 GGCGTATAGAGGGCCAGATTT 59.652 52.381 6.18 0.00 46.13 2.17
571 587 2.417719 GCGTATAGAGGGCCAGATTTG 58.582 52.381 6.18 0.00 0.00 2.32
572 588 2.417719 CGTATAGAGGGCCAGATTTGC 58.582 52.381 6.18 0.00 0.00 3.68
580 596 1.508088 GCCAGATTTGCCAAGTCCG 59.492 57.895 0.00 0.00 0.00 4.79
581 597 1.937546 GCCAGATTTGCCAAGTCCGG 61.938 60.000 0.00 0.00 0.00 5.14
582 598 0.609131 CCAGATTTGCCAAGTCCGGT 60.609 55.000 0.00 0.00 0.00 5.28
583 599 1.247567 CAGATTTGCCAAGTCCGGTT 58.752 50.000 0.00 0.00 0.00 4.44
584 600 1.068333 CAGATTTGCCAAGTCCGGTTG 60.068 52.381 0.00 0.00 0.00 3.77
585 601 0.958822 GATTTGCCAAGTCCGGTTGT 59.041 50.000 0.00 0.00 0.00 3.32
586 602 2.156098 GATTTGCCAAGTCCGGTTGTA 58.844 47.619 0.00 0.00 0.00 2.41
587 603 2.054232 TTTGCCAAGTCCGGTTGTAA 57.946 45.000 0.00 0.00 0.00 2.41
588 604 1.600023 TTGCCAAGTCCGGTTGTAAG 58.400 50.000 0.00 0.00 0.00 2.34
589 605 0.470766 TGCCAAGTCCGGTTGTAAGT 59.529 50.000 0.00 0.00 0.00 2.24
590 606 0.872388 GCCAAGTCCGGTTGTAAGTG 59.128 55.000 0.00 0.00 0.00 3.16
591 607 0.872388 CCAAGTCCGGTTGTAAGTGC 59.128 55.000 0.00 0.00 0.00 4.40
592 608 1.542547 CCAAGTCCGGTTGTAAGTGCT 60.543 52.381 0.00 0.00 0.00 4.40
593 609 1.798813 CAAGTCCGGTTGTAAGTGCTC 59.201 52.381 0.00 0.00 0.00 4.26
594 610 1.339097 AGTCCGGTTGTAAGTGCTCT 58.661 50.000 0.00 0.00 0.00 4.09
595 611 2.522185 AGTCCGGTTGTAAGTGCTCTA 58.478 47.619 0.00 0.00 0.00 2.43
596 612 2.895404 AGTCCGGTTGTAAGTGCTCTAA 59.105 45.455 0.00 0.00 0.00 2.10
597 613 2.991866 GTCCGGTTGTAAGTGCTCTAAC 59.008 50.000 0.00 0.00 0.00 2.34
598 614 1.990563 CCGGTTGTAAGTGCTCTAACG 59.009 52.381 0.00 0.00 0.00 3.18
599 615 2.352030 CCGGTTGTAAGTGCTCTAACGA 60.352 50.000 0.00 0.00 0.00 3.85
600 616 3.508762 CGGTTGTAAGTGCTCTAACGAT 58.491 45.455 0.00 0.00 0.00 3.73
601 617 4.439153 CCGGTTGTAAGTGCTCTAACGATA 60.439 45.833 0.00 0.00 0.00 2.92
602 618 5.097529 CGGTTGTAAGTGCTCTAACGATAA 58.902 41.667 0.00 0.00 0.00 1.75
603 619 5.747197 CGGTTGTAAGTGCTCTAACGATAAT 59.253 40.000 0.00 0.00 0.00 1.28
604 620 6.914215 CGGTTGTAAGTGCTCTAACGATAATA 59.086 38.462 0.00 0.00 0.00 0.98
605 621 7.433131 CGGTTGTAAGTGCTCTAACGATAATAA 59.567 37.037 0.00 0.00 0.00 1.40
606 622 9.090692 GGTTGTAAGTGCTCTAACGATAATAAA 57.909 33.333 0.00 0.00 0.00 1.40
607 623 9.897349 GTTGTAAGTGCTCTAACGATAATAAAC 57.103 33.333 0.00 0.00 0.00 2.01
608 624 9.642327 TTGTAAGTGCTCTAACGATAATAAACA 57.358 29.630 0.00 0.00 0.00 2.83
609 625 9.297586 TGTAAGTGCTCTAACGATAATAAACAG 57.702 33.333 0.00 0.00 0.00 3.16
610 626 9.512435 GTAAGTGCTCTAACGATAATAAACAGA 57.488 33.333 0.00 0.00 0.00 3.41
611 627 8.997621 AAGTGCTCTAACGATAATAAACAGAA 57.002 30.769 0.00 0.00 0.00 3.02
612 628 8.997621 AGTGCTCTAACGATAATAAACAGAAA 57.002 30.769 0.00 0.00 0.00 2.52
613 629 9.431887 AGTGCTCTAACGATAATAAACAGAAAA 57.568 29.630 0.00 0.00 0.00 2.29
661 677 9.875691 ATGGAGTATAAAAGGAAAAAGAAATGC 57.124 29.630 0.00 0.00 0.00 3.56
662 678 9.088987 TGGAGTATAAAAGGAAAAAGAAATGCT 57.911 29.630 0.00 0.00 0.00 3.79
663 679 9.358872 GGAGTATAAAAGGAAAAAGAAATGCTG 57.641 33.333 0.00 0.00 0.00 4.41
664 680 8.763049 AGTATAAAAGGAAAAAGAAATGCTGC 57.237 30.769 0.00 0.00 0.00 5.25
665 681 8.367156 AGTATAAAAGGAAAAAGAAATGCTGCA 58.633 29.630 4.13 4.13 0.00 4.41
666 682 8.987890 GTATAAAAGGAAAAAGAAATGCTGCAA 58.012 29.630 6.36 0.00 0.00 4.08
667 683 6.947644 AAAAGGAAAAAGAAATGCTGCAAT 57.052 29.167 6.36 0.00 0.00 3.56
668 684 9.723601 ATAAAAGGAAAAAGAAATGCTGCAATA 57.276 25.926 6.36 0.00 0.00 1.90
669 685 7.425577 AAAGGAAAAAGAAATGCTGCAATAC 57.574 32.000 6.36 0.61 0.00 1.89
670 686 6.350629 AGGAAAAAGAAATGCTGCAATACT 57.649 33.333 6.36 3.17 0.00 2.12
671 687 6.762333 AGGAAAAAGAAATGCTGCAATACTT 58.238 32.000 6.36 9.36 0.00 2.24
672 688 6.647895 AGGAAAAAGAAATGCTGCAATACTTG 59.352 34.615 6.36 0.00 0.00 3.16
673 689 6.646240 GGAAAAAGAAATGCTGCAATACTTGA 59.354 34.615 6.36 0.00 0.00 3.02
674 690 7.359514 GGAAAAAGAAATGCTGCAATACTTGAC 60.360 37.037 6.36 7.38 0.00 3.18
675 691 5.972107 AAGAAATGCTGCAATACTTGACT 57.028 34.783 6.36 0.00 0.00 3.41
676 692 5.972107 AGAAATGCTGCAATACTTGACTT 57.028 34.783 6.36 0.00 0.00 3.01
677 693 7.452880 AAGAAATGCTGCAATACTTGACTTA 57.547 32.000 6.36 0.00 0.00 2.24
678 694 7.452880 AGAAATGCTGCAATACTTGACTTAA 57.547 32.000 6.36 0.00 0.00 1.85
679 695 7.885297 AGAAATGCTGCAATACTTGACTTAAA 58.115 30.769 6.36 0.00 0.00 1.52
680 696 7.809806 AGAAATGCTGCAATACTTGACTTAAAC 59.190 33.333 6.36 0.00 0.00 2.01
681 697 6.824305 ATGCTGCAATACTTGACTTAAACT 57.176 33.333 6.36 0.00 0.00 2.66
682 698 6.633500 TGCTGCAATACTTGACTTAAACTT 57.367 33.333 0.00 0.00 0.00 2.66
683 699 7.737972 TGCTGCAATACTTGACTTAAACTTA 57.262 32.000 0.00 0.00 0.00 2.24
684 700 8.160521 TGCTGCAATACTTGACTTAAACTTAA 57.839 30.769 0.00 0.00 0.00 1.85
685 701 8.289618 TGCTGCAATACTTGACTTAAACTTAAG 58.710 33.333 0.00 0.00 44.37 1.85
699 715 8.760103 CTTAAACTTAAGTACTCCCTCTGTTC 57.240 38.462 8.92 0.00 36.31 3.18
700 716 6.742559 AAACTTAAGTACTCCCTCTGTTCA 57.257 37.500 8.92 0.00 0.00 3.18
701 717 5.725325 ACTTAAGTACTCCCTCTGTTCAC 57.275 43.478 6.26 0.00 0.00 3.18
702 718 5.395611 ACTTAAGTACTCCCTCTGTTCACT 58.604 41.667 6.26 0.00 0.00 3.41
703 719 5.839606 ACTTAAGTACTCCCTCTGTTCACTT 59.160 40.000 6.26 0.00 0.00 3.16
704 720 6.326843 ACTTAAGTACTCCCTCTGTTCACTTT 59.673 38.462 6.26 0.00 0.00 2.66
705 721 5.632034 AAGTACTCCCTCTGTTCACTTTT 57.368 39.130 0.00 0.00 0.00 2.27
706 722 4.962155 AGTACTCCCTCTGTTCACTTTTG 58.038 43.478 0.00 0.00 0.00 2.44
707 723 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
708 724 5.601313 AGTACTCCCTCTGTTCACTTTTGTA 59.399 40.000 0.00 0.00 0.00 2.41
709 725 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
710 726 5.368989 ACTCCCTCTGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
711 727 5.130477 ACTCCCTCTGTTCACTTTTGTAAGA 59.870 40.000 0.00 0.00 35.30 2.10
712 728 5.365619 TCCCTCTGTTCACTTTTGTAAGAC 58.634 41.667 0.00 0.00 35.30 3.01
713 729 4.211374 CCCTCTGTTCACTTTTGTAAGACG 59.789 45.833 0.00 0.00 35.30 4.18
714 730 4.809426 CCTCTGTTCACTTTTGTAAGACGT 59.191 41.667 0.00 0.00 35.30 4.34
715 731 5.293569 CCTCTGTTCACTTTTGTAAGACGTT 59.706 40.000 0.00 0.00 35.30 3.99
716 732 6.183360 CCTCTGTTCACTTTTGTAAGACGTTT 60.183 38.462 0.00 0.00 35.30 3.60
717 733 7.136289 TCTGTTCACTTTTGTAAGACGTTTT 57.864 32.000 0.00 0.00 35.30 2.43
718 734 7.018826 TCTGTTCACTTTTGTAAGACGTTTTG 58.981 34.615 0.83 0.00 35.30 2.44
719 735 6.087522 TGTTCACTTTTGTAAGACGTTTTGG 58.912 36.000 0.83 0.00 35.30 3.28
720 736 6.072618 TGTTCACTTTTGTAAGACGTTTTGGA 60.073 34.615 0.83 0.00 35.30 3.53
721 737 5.871539 TCACTTTTGTAAGACGTTTTGGAC 58.128 37.500 0.83 0.00 35.30 4.02
722 738 5.411977 TCACTTTTGTAAGACGTTTTGGACA 59.588 36.000 0.83 0.00 35.30 4.02
723 739 5.737290 CACTTTTGTAAGACGTTTTGGACAG 59.263 40.000 0.83 0.00 35.30 3.51
724 740 3.955771 TTGTAAGACGTTTTGGACAGC 57.044 42.857 0.83 0.00 0.00 4.40
725 741 2.907634 TGTAAGACGTTTTGGACAGCA 58.092 42.857 0.83 0.00 0.00 4.41
726 742 2.869801 TGTAAGACGTTTTGGACAGCAG 59.130 45.455 0.83 0.00 0.00 4.24
727 743 2.325583 AAGACGTTTTGGACAGCAGA 57.674 45.000 0.00 0.00 0.00 4.26
728 744 2.325583 AGACGTTTTGGACAGCAGAA 57.674 45.000 0.00 0.00 0.00 3.02
729 745 2.639065 AGACGTTTTGGACAGCAGAAA 58.361 42.857 0.00 0.00 0.00 2.52
730 746 3.214328 AGACGTTTTGGACAGCAGAAAT 58.786 40.909 0.00 0.00 0.00 2.17
731 747 3.632145 AGACGTTTTGGACAGCAGAAATT 59.368 39.130 0.00 0.00 0.00 1.82
732 748 3.705604 ACGTTTTGGACAGCAGAAATTG 58.294 40.909 0.00 0.00 0.00 2.32
733 749 3.380004 ACGTTTTGGACAGCAGAAATTGA 59.620 39.130 0.00 0.00 0.00 2.57
734 750 3.976942 CGTTTTGGACAGCAGAAATTGAG 59.023 43.478 0.00 0.00 0.00 3.02
735 751 3.648339 TTTGGACAGCAGAAATTGAGC 57.352 42.857 0.00 0.00 0.00 4.26
736 752 2.574006 TGGACAGCAGAAATTGAGCT 57.426 45.000 0.00 0.00 39.63 4.09
744 760 5.382618 AGCAGAAATTGAGCTGTTTTAGG 57.617 39.130 0.00 0.00 37.20 2.69
745 761 4.829492 AGCAGAAATTGAGCTGTTTTAGGT 59.171 37.500 0.00 0.00 40.52 3.08
746 762 4.919754 GCAGAAATTGAGCTGTTTTAGGTG 59.080 41.667 0.00 0.00 37.23 4.00
747 763 5.507985 GCAGAAATTGAGCTGTTTTAGGTGT 60.508 40.000 0.00 0.00 37.23 4.16
748 764 6.507023 CAGAAATTGAGCTGTTTTAGGTGTT 58.493 36.000 0.00 0.00 37.23 3.32
749 765 7.648142 CAGAAATTGAGCTGTTTTAGGTGTTA 58.352 34.615 0.00 0.00 37.23 2.41
750 766 8.299570 CAGAAATTGAGCTGTTTTAGGTGTTAT 58.700 33.333 0.00 0.00 37.23 1.89
751 767 8.515414 AGAAATTGAGCTGTTTTAGGTGTTATC 58.485 33.333 0.00 0.00 37.23 1.75
752 768 8.409358 AAATTGAGCTGTTTTAGGTGTTATCT 57.591 30.769 0.00 0.00 37.23 1.98
753 769 8.409358 AATTGAGCTGTTTTAGGTGTTATCTT 57.591 30.769 0.00 0.00 37.23 2.40
754 770 9.515226 AATTGAGCTGTTTTAGGTGTTATCTTA 57.485 29.630 0.00 0.00 37.23 2.10
755 771 8.911918 TTGAGCTGTTTTAGGTGTTATCTTAA 57.088 30.769 0.00 0.00 37.23 1.85
756 772 8.911918 TGAGCTGTTTTAGGTGTTATCTTAAA 57.088 30.769 0.00 0.00 37.23 1.52
757 773 9.515226 TGAGCTGTTTTAGGTGTTATCTTAAAT 57.485 29.630 0.00 0.00 37.23 1.40
758 774 9.774742 GAGCTGTTTTAGGTGTTATCTTAAATG 57.225 33.333 0.00 0.00 37.23 2.32
759 775 9.297037 AGCTGTTTTAGGTGTTATCTTAAATGT 57.703 29.630 0.00 0.00 35.38 2.71
760 776 9.556030 GCTGTTTTAGGTGTTATCTTAAATGTC 57.444 33.333 0.00 0.00 0.00 3.06
768 784 9.498176 AGGTGTTATCTTAAATGTCTAAAACGT 57.502 29.630 0.00 0.00 0.00 3.99
769 785 9.750882 GGTGTTATCTTAAATGTCTAAAACGTC 57.249 33.333 0.00 0.00 0.00 4.34
862 878 7.764695 CCAAATTAATGGTATTTCCCGAAAC 57.235 36.000 0.00 0.00 35.65 2.78
866 882 3.732048 ATGGTATTTCCCGAAACAGGT 57.268 42.857 0.00 0.00 32.51 4.00
874 890 0.179056 CCCGAAACAGGTCTGTGTGT 60.179 55.000 4.22 0.00 44.13 3.72
876 892 1.202533 CCGAAACAGGTCTGTGTGTCT 60.203 52.381 4.22 0.00 44.13 3.41
878 894 2.738643 CGAAACAGGTCTGTGTGTCTGT 60.739 50.000 4.22 0.00 44.13 3.41
879 895 2.604046 AACAGGTCTGTGTGTCTGTC 57.396 50.000 4.22 0.00 44.13 3.51
880 896 0.385751 ACAGGTCTGTGTGTCTGTCG 59.614 55.000 2.46 0.00 43.11 4.35
881 897 0.385751 CAGGTCTGTGTGTCTGTCGT 59.614 55.000 0.00 0.00 0.00 4.34
882 898 1.607148 CAGGTCTGTGTGTCTGTCGTA 59.393 52.381 0.00 0.00 0.00 3.43
883 899 1.880675 AGGTCTGTGTGTCTGTCGTAG 59.119 52.381 0.00 0.00 0.00 3.51
884 900 1.607628 GGTCTGTGTGTCTGTCGTAGT 59.392 52.381 0.00 0.00 0.00 2.73
885 901 2.604855 GGTCTGTGTGTCTGTCGTAGTG 60.605 54.545 0.00 0.00 0.00 2.74
886 902 1.607148 TCTGTGTGTCTGTCGTAGTGG 59.393 52.381 0.00 0.00 0.00 4.00
887 903 1.607148 CTGTGTGTCTGTCGTAGTGGA 59.393 52.381 0.00 0.00 0.00 4.02
888 904 1.607148 TGTGTGTCTGTCGTAGTGGAG 59.393 52.381 0.00 0.00 0.00 3.86
889 905 1.878088 GTGTGTCTGTCGTAGTGGAGA 59.122 52.381 0.00 0.00 0.00 3.71
890 906 2.292569 GTGTGTCTGTCGTAGTGGAGAA 59.707 50.000 0.00 0.00 0.00 2.87
891 907 2.953648 TGTGTCTGTCGTAGTGGAGAAA 59.046 45.455 0.00 0.00 0.00 2.52
892 908 3.004419 TGTGTCTGTCGTAGTGGAGAAAG 59.996 47.826 0.00 0.00 0.00 2.62
893 909 3.252701 GTGTCTGTCGTAGTGGAGAAAGA 59.747 47.826 0.00 0.00 0.00 2.52
894 910 3.502595 TGTCTGTCGTAGTGGAGAAAGAG 59.497 47.826 0.00 0.00 31.91 2.85
895 911 3.082548 TCTGTCGTAGTGGAGAAAGAGG 58.917 50.000 0.00 0.00 0.00 3.69
896 912 1.544691 TGTCGTAGTGGAGAAAGAGGC 59.455 52.381 0.00 0.00 0.00 4.70
897 913 0.809385 TCGTAGTGGAGAAAGAGGCG 59.191 55.000 0.00 0.00 0.00 5.52
898 914 0.809385 CGTAGTGGAGAAAGAGGCGA 59.191 55.000 0.00 0.00 0.00 5.54
899 915 1.202200 CGTAGTGGAGAAAGAGGCGAG 60.202 57.143 0.00 0.00 0.00 5.03
900 916 2.093106 GTAGTGGAGAAAGAGGCGAGA 58.907 52.381 0.00 0.00 0.00 4.04
901 917 1.633774 AGTGGAGAAAGAGGCGAGAA 58.366 50.000 0.00 0.00 0.00 2.87
902 918 1.971357 AGTGGAGAAAGAGGCGAGAAA 59.029 47.619 0.00 0.00 0.00 2.52
903 919 2.028567 AGTGGAGAAAGAGGCGAGAAAG 60.029 50.000 0.00 0.00 0.00 2.62
904 920 2.028930 GTGGAGAAAGAGGCGAGAAAGA 60.029 50.000 0.00 0.00 0.00 2.52
905 921 2.232452 TGGAGAAAGAGGCGAGAAAGAG 59.768 50.000 0.00 0.00 0.00 2.85
906 922 2.494073 GGAGAAAGAGGCGAGAAAGAGA 59.506 50.000 0.00 0.00 0.00 3.10
907 923 3.428862 GGAGAAAGAGGCGAGAAAGAGAG 60.429 52.174 0.00 0.00 0.00 3.20
908 924 3.426615 AGAAAGAGGCGAGAAAGAGAGA 58.573 45.455 0.00 0.00 0.00 3.10
909 925 3.443681 AGAAAGAGGCGAGAAAGAGAGAG 59.556 47.826 0.00 0.00 0.00 3.20
910 926 1.762708 AGAGGCGAGAAAGAGAGAGG 58.237 55.000 0.00 0.00 0.00 3.69
911 927 0.744281 GAGGCGAGAAAGAGAGAGGG 59.256 60.000 0.00 0.00 0.00 4.30
912 928 0.686112 AGGCGAGAAAGAGAGAGGGG 60.686 60.000 0.00 0.00 0.00 4.79
913 929 1.681486 GGCGAGAAAGAGAGAGGGGG 61.681 65.000 0.00 0.00 0.00 5.40
930 946 3.721706 GGGCAGAGACCACCCCTG 61.722 72.222 0.00 0.00 37.70 4.45
931 947 2.930562 GGCAGAGACCACCCCTGT 60.931 66.667 0.00 0.00 0.00 4.00
932 948 2.348998 GCAGAGACCACCCCTGTG 59.651 66.667 0.00 0.00 42.39 3.66
933 949 2.348998 CAGAGACCACCCCTGTGC 59.651 66.667 0.00 0.00 41.35 4.57
934 950 2.205462 AGAGACCACCCCTGTGCT 59.795 61.111 0.00 0.00 41.35 4.40
935 951 2.219875 AGAGACCACCCCTGTGCTG 61.220 63.158 0.00 0.00 41.35 4.41
936 952 2.448542 AGACCACCCCTGTGCTGT 60.449 61.111 0.00 0.00 41.35 4.40
937 953 1.152118 AGACCACCCCTGTGCTGTA 60.152 57.895 0.00 0.00 41.35 2.74
938 954 1.003718 GACCACCCCTGTGCTGTAC 60.004 63.158 0.00 0.00 41.35 2.90
939 955 1.461461 ACCACCCCTGTGCTGTACT 60.461 57.895 0.00 0.00 41.35 2.73
940 956 1.296715 CCACCCCTGTGCTGTACTC 59.703 63.158 0.00 0.00 41.35 2.59
941 957 1.296715 CACCCCTGTGCTGTACTCC 59.703 63.158 0.00 0.00 35.31 3.85
942 958 1.158705 ACCCCTGTGCTGTACTCCT 59.841 57.895 0.00 0.00 0.00 3.69
943 959 0.412244 ACCCCTGTGCTGTACTCCTA 59.588 55.000 0.00 0.00 0.00 2.94
944 960 1.008449 ACCCCTGTGCTGTACTCCTAT 59.992 52.381 0.00 0.00 0.00 2.57
945 961 2.119495 CCCCTGTGCTGTACTCCTATT 58.881 52.381 0.00 0.00 0.00 1.73
946 962 2.103263 CCCCTGTGCTGTACTCCTATTC 59.897 54.545 0.00 0.00 0.00 1.75
947 963 2.223829 CCCTGTGCTGTACTCCTATTCG 60.224 54.545 0.00 0.00 0.00 3.34
948 964 2.464865 CTGTGCTGTACTCCTATTCGC 58.535 52.381 0.00 0.00 0.00 4.70
949 965 1.136305 TGTGCTGTACTCCTATTCGCC 59.864 52.381 0.00 0.00 0.00 5.54
950 966 0.384309 TGCTGTACTCCTATTCGCCG 59.616 55.000 0.00 0.00 0.00 6.46
951 967 0.318784 GCTGTACTCCTATTCGCCGG 60.319 60.000 0.00 0.00 0.00 6.13
952 968 1.315690 CTGTACTCCTATTCGCCGGA 58.684 55.000 5.05 0.00 0.00 5.14
953 969 1.679680 CTGTACTCCTATTCGCCGGAA 59.320 52.381 5.05 0.00 36.41 4.30
954 970 2.100252 CTGTACTCCTATTCGCCGGAAA 59.900 50.000 5.05 0.00 35.40 3.13
955 971 2.696707 TGTACTCCTATTCGCCGGAAAT 59.303 45.455 5.05 6.70 35.40 2.17
956 972 2.528041 ACTCCTATTCGCCGGAAATC 57.472 50.000 5.05 0.00 35.40 2.17
957 973 1.269621 ACTCCTATTCGCCGGAAATCG 60.270 52.381 5.05 0.00 35.40 3.34
958 974 0.748450 TCCTATTCGCCGGAAATCGT 59.252 50.000 5.05 0.00 35.40 3.73
959 975 1.137513 CCTATTCGCCGGAAATCGTC 58.862 55.000 5.05 0.00 35.40 4.20
960 976 1.269621 CCTATTCGCCGGAAATCGTCT 60.270 52.381 5.05 0.00 35.40 4.18
961 977 2.052157 CTATTCGCCGGAAATCGTCTC 58.948 52.381 5.05 0.00 35.40 3.36
962 978 0.529992 ATTCGCCGGAAATCGTCTCC 60.530 55.000 5.05 0.00 35.40 3.71
963 979 1.601419 TTCGCCGGAAATCGTCTCCT 61.601 55.000 5.05 0.00 37.11 3.69
996 1012 3.414700 CGCGTCTGCAACTCCACC 61.415 66.667 0.00 0.00 42.97 4.61
1009 1025 2.438434 CCACCTCAATGGCGACCC 60.438 66.667 0.00 0.00 40.22 4.46
1067 1083 3.243771 CGGGATCTCGCAATAGGTAAACT 60.244 47.826 0.00 0.00 0.00 2.66
1120 1139 2.580470 GCTGCCGTCGATCATCACG 61.580 63.158 0.00 0.00 35.72 4.35
1125 1144 2.499205 GTCGATCATCACGGGCCA 59.501 61.111 4.39 0.00 0.00 5.36
1187 1218 3.519930 GGACGAGAGGCGAGGGTC 61.520 72.222 0.00 0.00 43.44 4.46
1196 1227 2.040544 GGCGAGGGTCAACATGTGG 61.041 63.158 0.00 0.00 0.00 4.17
1197 1228 1.302511 GCGAGGGTCAACATGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
1198 1229 0.036765 GCGAGGGTCAACATGTGGTA 60.037 55.000 0.00 0.00 0.00 3.25
1201 1232 0.991920 AGGGTCAACATGTGGTAGGG 59.008 55.000 0.00 0.00 0.00 3.53
1202 1233 0.988832 GGGTCAACATGTGGTAGGGA 59.011 55.000 0.00 0.00 0.00 4.20
1203 1234 1.353022 GGGTCAACATGTGGTAGGGAA 59.647 52.381 0.00 0.00 0.00 3.97
1254 1285 2.030274 TCGCAACATTGTCTCTTCTCGA 60.030 45.455 0.00 0.00 0.00 4.04
1255 1286 2.731451 CGCAACATTGTCTCTTCTCGAA 59.269 45.455 0.00 0.00 0.00 3.71
1257 1288 3.422343 GCAACATTGTCTCTTCTCGAACG 60.422 47.826 0.00 0.00 0.00 3.95
1284 1337 7.201384 CCGATTACCTAAAGTTGTCGTCTTTAC 60.201 40.741 0.00 0.00 36.65 2.01
1285 1338 7.326789 CGATTACCTAAAGTTGTCGTCTTTACA 59.673 37.037 0.00 0.00 36.65 2.41
1301 1357 0.978667 TACAGCCCCGGTCATTAGCA 60.979 55.000 0.00 0.00 0.00 3.49
1305 1361 0.385390 GCCCCGGTCATTAGCAATTG 59.615 55.000 0.00 0.00 0.00 2.32
1377 1443 2.203209 GACCCCGGCCATTAGCAG 60.203 66.667 2.24 0.00 46.50 4.24
1440 1506 1.337728 ACCGAGCGTCATGTCAAATCA 60.338 47.619 0.00 0.00 0.00 2.57
1476 1608 1.204146 CAGTAAGGGGGCTTGAGCTA 58.796 55.000 2.66 0.00 41.70 3.32
1477 1609 1.139853 CAGTAAGGGGGCTTGAGCTAG 59.860 57.143 2.66 0.00 41.70 3.42
1478 1610 0.470341 GTAAGGGGGCTTGAGCTAGG 59.530 60.000 2.66 0.00 41.70 3.02
1479 1611 1.345715 TAAGGGGGCTTGAGCTAGGC 61.346 60.000 1.43 1.43 41.70 3.93
1480 1612 3.411517 GGGGGCTTGAGCTAGGCA 61.412 66.667 11.75 0.00 42.13 4.75
1481 1613 2.677228 GGGGCTTGAGCTAGGCAA 59.323 61.111 11.75 0.00 42.13 4.52
1482 1614 1.000896 GGGGCTTGAGCTAGGCAAA 60.001 57.895 11.75 0.00 42.13 3.68
1483 1615 1.034292 GGGGCTTGAGCTAGGCAAAG 61.034 60.000 11.75 1.21 42.13 2.77
1484 1616 1.034292 GGGCTTGAGCTAGGCAAAGG 61.034 60.000 11.75 0.00 42.13 3.11
1485 1617 1.661498 GGCTTGAGCTAGGCAAAGGC 61.661 60.000 5.23 12.71 40.50 4.35
1499 1631 3.607084 AAGGCCCATCCCCAACAGC 62.607 63.158 0.00 0.00 34.51 4.40
1500 1632 4.380945 GGCCCATCCCCAACAGCA 62.381 66.667 0.00 0.00 0.00 4.41
1501 1633 3.070576 GCCCATCCCCAACAGCAC 61.071 66.667 0.00 0.00 0.00 4.40
1505 1637 1.604308 CATCCCCAACAGCACAGCA 60.604 57.895 0.00 0.00 0.00 4.41
1507 1639 3.663176 CCCCAACAGCACAGCACG 61.663 66.667 0.00 0.00 0.00 5.34
1513 1645 0.319900 AACAGCACAGCACGACTAGG 60.320 55.000 0.00 0.00 0.00 3.02
1515 1647 2.125512 GCACAGCACGACTAGGGG 60.126 66.667 0.00 0.00 0.00 4.79
1516 1648 2.579201 CACAGCACGACTAGGGGG 59.421 66.667 0.00 0.00 0.00 5.40
1517 1649 3.391382 ACAGCACGACTAGGGGGC 61.391 66.667 2.31 2.31 0.00 5.80
1518 1650 4.162690 CAGCACGACTAGGGGGCC 62.163 72.222 6.67 0.00 0.00 5.80
1520 1652 3.712907 GCACGACTAGGGGGCCAA 61.713 66.667 4.39 0.00 0.00 4.52
1521 1653 2.267961 CACGACTAGGGGGCCAAC 59.732 66.667 4.39 0.00 0.00 3.77
1522 1654 2.122056 ACGACTAGGGGGCCAACT 59.878 61.111 4.39 5.41 0.00 3.16
1524 1656 2.732619 CGACTAGGGGGCCAACTCC 61.733 68.421 4.39 0.00 0.00 3.85
1526 1658 0.988678 GACTAGGGGGCCAACTCCAT 60.989 60.000 4.39 0.00 0.00 3.41
1527 1659 1.281925 ACTAGGGGGCCAACTCCATG 61.282 60.000 4.39 0.24 0.00 3.66
1529 1661 1.279025 TAGGGGGCCAACTCCATGTC 61.279 60.000 4.39 0.00 0.00 3.06
1530 1662 2.043953 GGGGCCAACTCCATGTCC 60.044 66.667 4.39 0.00 0.00 4.02
1531 1663 2.043953 GGGCCAACTCCATGTCCC 60.044 66.667 4.39 0.00 0.00 4.46
1532 1664 2.616458 GGGCCAACTCCATGTCCCT 61.616 63.158 4.39 0.00 30.04 4.20
1533 1665 1.384191 GGCCAACTCCATGTCCCTT 59.616 57.895 0.00 0.00 0.00 3.95
1534 1666 0.251787 GGCCAACTCCATGTCCCTTT 60.252 55.000 0.00 0.00 0.00 3.11
1535 1667 1.005450 GGCCAACTCCATGTCCCTTTA 59.995 52.381 0.00 0.00 0.00 1.85
1536 1668 2.369394 GCCAACTCCATGTCCCTTTAG 58.631 52.381 0.00 0.00 0.00 1.85
1537 1669 2.369394 CCAACTCCATGTCCCTTTAGC 58.631 52.381 0.00 0.00 0.00 3.09
1538 1670 2.025887 CCAACTCCATGTCCCTTTAGCT 60.026 50.000 0.00 0.00 0.00 3.32
1539 1671 3.012518 CAACTCCATGTCCCTTTAGCTG 58.987 50.000 0.00 0.00 0.00 4.24
1540 1672 2.269940 ACTCCATGTCCCTTTAGCTGT 58.730 47.619 0.00 0.00 0.00 4.40
1541 1673 3.450904 ACTCCATGTCCCTTTAGCTGTA 58.549 45.455 0.00 0.00 0.00 2.74
1542 1674 3.452627 ACTCCATGTCCCTTTAGCTGTAG 59.547 47.826 0.00 0.00 0.00 2.74
1543 1675 3.450904 TCCATGTCCCTTTAGCTGTAGT 58.549 45.455 0.00 0.00 0.00 2.73
1544 1676 3.197766 TCCATGTCCCTTTAGCTGTAGTG 59.802 47.826 0.00 0.00 0.00 2.74
1545 1677 3.055094 CCATGTCCCTTTAGCTGTAGTGT 60.055 47.826 0.00 0.00 0.00 3.55
1546 1678 4.565652 CCATGTCCCTTTAGCTGTAGTGTT 60.566 45.833 0.00 0.00 0.00 3.32
1547 1679 4.267349 TGTCCCTTTAGCTGTAGTGTTC 57.733 45.455 0.00 0.00 0.00 3.18
1548 1680 3.901844 TGTCCCTTTAGCTGTAGTGTTCT 59.098 43.478 0.00 0.00 0.00 3.01
1549 1681 5.081728 TGTCCCTTTAGCTGTAGTGTTCTA 58.918 41.667 0.00 0.00 0.00 2.10
1550 1682 5.720041 TGTCCCTTTAGCTGTAGTGTTCTAT 59.280 40.000 0.00 0.00 0.00 1.98
1551 1683 6.212791 TGTCCCTTTAGCTGTAGTGTTCTATT 59.787 38.462 0.00 0.00 0.00 1.73
1552 1684 6.535508 GTCCCTTTAGCTGTAGTGTTCTATTG 59.464 42.308 0.00 0.00 0.00 1.90
1553 1685 5.817816 CCCTTTAGCTGTAGTGTTCTATTGG 59.182 44.000 0.00 0.00 0.00 3.16
1554 1686 6.407202 CCTTTAGCTGTAGTGTTCTATTGGT 58.593 40.000 0.00 0.00 0.00 3.67
1555 1687 7.364408 CCCTTTAGCTGTAGTGTTCTATTGGTA 60.364 40.741 0.00 0.00 0.00 3.25
1556 1688 7.491696 CCTTTAGCTGTAGTGTTCTATTGGTAC 59.508 40.741 0.00 0.00 0.00 3.34
1562 1694 7.312657 TGTAGTGTTCTATTGGTACTACGAG 57.687 40.000 0.00 0.00 43.99 4.18
1577 1709 6.205658 GGTACTACGAGTAGTATAAACTGGGG 59.794 46.154 21.51 0.00 46.57 4.96
1589 1721 0.178921 AACTGGGGACTCTGCTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
1620 1754 3.993081 GAGGAGAAACACACTCACATCAG 59.007 47.826 0.00 0.00 36.26 2.90
1638 1772 6.036517 CACATCAGTACAGTTTAGATGAAGGC 59.963 42.308 12.94 0.00 38.62 4.35
1639 1773 5.738619 TCAGTACAGTTTAGATGAAGGCA 57.261 39.130 0.00 0.00 0.00 4.75
1640 1774 6.299805 TCAGTACAGTTTAGATGAAGGCAT 57.700 37.500 0.00 0.00 37.47 4.40
1641 1775 6.108687 TCAGTACAGTTTAGATGAAGGCATG 58.891 40.000 0.00 0.00 34.11 4.06
1642 1776 5.877012 CAGTACAGTTTAGATGAAGGCATGT 59.123 40.000 0.00 0.00 34.11 3.21
1643 1777 6.036517 CAGTACAGTTTAGATGAAGGCATGTC 59.963 42.308 0.00 0.00 34.11 3.06
1644 1778 5.171339 ACAGTTTAGATGAAGGCATGTCT 57.829 39.130 0.00 0.00 34.11 3.41
1645 1779 6.299805 ACAGTTTAGATGAAGGCATGTCTA 57.700 37.500 0.00 0.00 34.11 2.59
1646 1780 6.109359 ACAGTTTAGATGAAGGCATGTCTAC 58.891 40.000 0.00 0.00 34.11 2.59
1656 1790 2.300152 AGGCATGTCTACCGTCCATATG 59.700 50.000 0.00 0.00 0.00 1.78
1666 1800 5.833667 TCTACCGTCCATATGAAGATCAGTT 59.166 40.000 3.65 0.00 0.00 3.16
1667 1801 7.002276 TCTACCGTCCATATGAAGATCAGTTA 58.998 38.462 3.65 0.00 0.00 2.24
1716 1851 8.030692 TGAAAATGATTCAATTTCCTGCTACTG 58.969 33.333 19.55 0.00 33.74 2.74
1731 1866 3.756434 TGCTACTGGGTCAGCAAATTTAC 59.244 43.478 0.00 0.00 44.49 2.01
1733 1868 2.159382 ACTGGGTCAGCAAATTTACCG 58.841 47.619 2.51 0.00 34.37 4.02
1849 1988 1.956477 AGTGCCCTTTGTTTACTGCAG 59.044 47.619 13.48 13.48 0.00 4.41
1857 1996 5.638234 CCCTTTGTTTACTGCAGTCTACTAC 59.362 44.000 25.56 14.95 0.00 2.73
1908 2058 6.972328 TCACTTTGTTTTACATCAGTTCAAGC 59.028 34.615 0.00 0.00 0.00 4.01
1934 2084 7.114811 CCATTAAGGATTTTTATCGCAATTCGG 59.885 37.037 0.00 0.00 41.22 4.30
1943 2093 1.087202 TCGCAATTCGGGGACAATCG 61.087 55.000 0.00 0.00 39.05 3.34
1956 2106 4.571176 GGGGACAATCGAAGAGAACATTAC 59.429 45.833 0.00 0.00 43.63 1.89
1961 2111 6.546395 ACAATCGAAGAGAACATTACATTGC 58.454 36.000 0.00 0.00 43.63 3.56
2012 2162 5.116180 TCGACAACAGTGAAATGAAGTTCT 58.884 37.500 4.17 0.00 0.00 3.01
2035 2185 1.878953 AGTGCTCGTACAAAGTTGGG 58.121 50.000 0.00 0.00 0.00 4.12
2040 2190 0.402504 TCGTACAAAGTTGGGCCCAT 59.597 50.000 29.23 12.68 0.00 4.00
2041 2191 0.808755 CGTACAAAGTTGGGCCCATC 59.191 55.000 29.23 25.89 0.00 3.51
2042 2192 1.884497 CGTACAAAGTTGGGCCCATCA 60.884 52.381 30.33 13.98 0.00 3.07
2080 2230 2.281761 AGGGGTGCTGCAAGTTCG 60.282 61.111 2.77 0.00 35.30 3.95
2124 2274 2.116736 TTTGTCAGAGCTTTGGCGCG 62.117 55.000 0.00 0.00 42.97 6.86
2158 2308 7.968405 GCTATCCAAGTTGAAAATTACGTCAAT 59.032 33.333 3.87 0.00 36.23 2.57
2387 2541 3.674997 TGCAAGTCTGGTGGAAAGTATC 58.325 45.455 0.00 0.00 0.00 2.24
2513 2667 6.070366 AGGTGTTGATACTTAAGGGTAAGTCC 60.070 42.308 7.53 1.00 45.63 3.85
2514 2668 6.070366 GGTGTTGATACTTAAGGGTAAGTCCT 60.070 42.308 7.53 0.00 45.63 3.85
2515 2669 7.392418 GTGTTGATACTTAAGGGTAAGTCCTT 58.608 38.462 7.53 1.62 45.63 3.36
2696 2855 9.447040 GTTTGAAACAACTCTAAGATGTAAACC 57.553 33.333 2.68 0.00 29.45 3.27
2787 2950 1.062258 AAACATGCGCATTTTGCTCG 58.938 45.000 22.81 10.28 42.25 5.03
2907 3070 5.982516 GTCATGTTTTAGCACCAAATTGTGA 59.017 36.000 0.30 0.00 38.55 3.58
2908 3071 5.982516 TCATGTTTTAGCACCAAATTGTGAC 59.017 36.000 0.30 0.00 38.55 3.67
2909 3072 5.330455 TGTTTTAGCACCAAATTGTGACA 57.670 34.783 0.30 0.00 38.55 3.58
2911 3074 5.809562 TGTTTTAGCACCAAATTGTGACAAG 59.190 36.000 3.74 0.00 38.55 3.16
2914 3083 6.892658 TTAGCACCAAATTGTGACAAGTAT 57.107 33.333 3.74 0.00 38.55 2.12
3043 3223 4.804868 TGCATTTTCCATGTGCAAGTAT 57.195 36.364 5.53 0.00 44.99 2.12
3295 3517 4.937620 GGAGTGTTCTGCAATGATACAAGA 59.062 41.667 0.00 0.00 32.20 3.02
3389 3627 4.407621 TGAAGACTTGGACAACTGTAAGGA 59.592 41.667 0.00 0.00 39.30 3.36
3524 3762 1.378762 CCGGACCAGTGGGACAATT 59.621 57.895 15.21 0.00 44.16 2.32
3556 3795 4.324254 GGTGGTTTCTCATGGAATCCTACA 60.324 45.833 17.63 3.71 41.80 2.74
3632 3874 4.533707 TGTGGAAGATGATGGAAGAACTCT 59.466 41.667 0.00 0.00 0.00 3.24
3681 3923 2.100087 GGGTCGAGAGAAGAAGGTGATC 59.900 54.545 0.00 0.00 45.01 2.92
3809 4056 0.321034 TCATGTGTCTGTGCCTCTGC 60.321 55.000 0.00 0.00 38.26 4.26
3944 4321 8.647143 ATTCAGTTGGATGTTGTTTTGTTAAG 57.353 30.769 0.00 0.00 0.00 1.85
3952 4329 4.911053 TGTTGTTTTGTTAAGCGTACCTG 58.089 39.130 0.00 0.00 0.00 4.00
4087 4466 5.402270 GGTTGACATGTATTTGTGCTTGTTC 59.598 40.000 0.00 0.00 0.00 3.18
4117 4496 5.886474 TCCAAGTCCATGTACTACTCTAGTG 59.114 44.000 0.00 0.00 39.81 2.74
4118 4497 5.886474 CCAAGTCCATGTACTACTCTAGTGA 59.114 44.000 0.00 0.00 39.81 3.41
4161 4544 4.489737 TCTTTCCAGAGGGAGTACTTCAA 58.510 43.478 2.92 0.00 46.01 2.69
4173 4556 5.368145 GGAGTACTTCAATGACATGGCATA 58.632 41.667 16.16 0.00 0.00 3.14
4174 4557 5.237344 GGAGTACTTCAATGACATGGCATAC 59.763 44.000 16.16 8.19 0.00 2.39
4175 4558 5.744171 AGTACTTCAATGACATGGCATACA 58.256 37.500 16.16 0.65 0.00 2.29
4176 4559 6.179756 AGTACTTCAATGACATGGCATACAA 58.820 36.000 16.16 9.59 0.00 2.41
4276 4675 4.467438 CAGGGGCAAAAGATTTACCTCATT 59.533 41.667 0.00 0.00 0.00 2.57
4297 4696 7.134163 TCATTCATTAATTAAGCATCGCTGTG 58.866 34.615 3.94 0.00 39.62 3.66
4303 4702 2.177394 TAAGCATCGCTGTGTTTGGA 57.823 45.000 0.00 0.00 39.62 3.53
4310 4709 1.202639 TCGCTGTGTTTGGATGTCTGT 60.203 47.619 0.00 0.00 0.00 3.41
4339 4740 4.584394 CGCCTACGTATTGAATTGGTTTC 58.416 43.478 0.00 0.00 32.69 2.78
4355 4756 2.293399 GGTTTCAGTTCCAATTCAGCGT 59.707 45.455 0.00 0.00 0.00 5.07
4440 4841 6.551601 ACGGAATCCTACTCAGATTTCAGTAT 59.448 38.462 0.00 0.00 34.12 2.12
4477 4878 6.832900 TGGATGTCAAACTATGGAATTGCATA 59.167 34.615 17.49 17.49 0.00 3.14
4504 4905 8.338259 GCAACATTAGTATAGACATCAAACCAG 58.662 37.037 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.579201 CATCGTCTCCGCCCTTGT 59.421 61.111 0.00 0.00 0.00 3.16
1 2 2.892425 GCATCGTCTCCGCCCTTG 60.892 66.667 0.00 0.00 0.00 3.61
30 32 1.312371 TGCCTTGGTATTCTTGCGGC 61.312 55.000 0.00 0.00 36.64 6.53
41 43 0.037232 GCGAGTAAGAGTGCCTTGGT 60.037 55.000 0.00 0.00 36.34 3.67
49 51 3.589988 CAACTTGATGGCGAGTAAGAGT 58.410 45.455 0.00 0.00 37.79 3.24
54 56 3.153024 GGCAACTTGATGGCGAGTA 57.847 52.632 0.00 0.00 37.79 2.59
65 67 3.414700 CTCGCGCTTCGGCAACTT 61.415 61.111 5.56 0.00 41.88 2.66
71 73 4.445545 GTTTGCCTCGCGCTTCGG 62.446 66.667 5.56 3.75 38.78 4.30
74 76 2.639286 CTTGTTTGCCTCGCGCTT 59.361 55.556 5.56 0.00 38.78 4.68
77 79 2.680913 CCTCCTTGTTTGCCTCGCG 61.681 63.158 0.00 0.00 0.00 5.87
79 81 2.680913 CGCCTCCTTGTTTGCCTCG 61.681 63.158 0.00 0.00 0.00 4.63
88 90 4.467084 TTAGCCGCCGCCTCCTTG 62.467 66.667 0.00 0.00 34.57 3.61
134 136 1.685491 CCTACAGAGTAGGCGGTCCTT 60.685 57.143 10.04 0.00 40.66 3.36
145 147 2.982130 CCCGCAAGCCTACAGAGT 59.018 61.111 0.00 0.00 0.00 3.24
157 159 2.597217 CTTCACCTTTGGCCCGCA 60.597 61.111 0.00 0.00 0.00 5.69
158 160 4.056125 GCTTCACCTTTGGCCCGC 62.056 66.667 0.00 0.00 0.00 6.13
164 166 2.996621 CGGAGTTAGAGCTTCACCTTTG 59.003 50.000 0.00 0.00 0.00 2.77
165 167 2.897969 TCGGAGTTAGAGCTTCACCTTT 59.102 45.455 0.00 0.00 0.00 3.11
166 168 2.231721 GTCGGAGTTAGAGCTTCACCTT 59.768 50.000 0.00 0.00 0.00 3.50
171 173 2.093106 TCAGGTCGGAGTTAGAGCTTC 58.907 52.381 0.00 0.00 43.01 3.86
172 174 1.819903 GTCAGGTCGGAGTTAGAGCTT 59.180 52.381 0.00 0.00 43.01 3.74
196 198 3.316573 GAAGGTGGAGGTGGAGCCG 62.317 68.421 0.00 0.00 43.70 5.52
239 242 2.367202 CCCTCCACCATGTAGGCGT 61.367 63.158 0.00 0.00 43.14 5.68
273 276 3.408853 CCCTTCCCCTTCCGGTCC 61.409 72.222 0.00 0.00 0.00 4.46
278 281 3.408853 CCCGTCCCTTCCCCTTCC 61.409 72.222 0.00 0.00 0.00 3.46
291 294 1.910580 ATCACCATTTCCTCGCCCGT 61.911 55.000 0.00 0.00 0.00 5.28
293 296 1.405463 GAAATCACCATTTCCTCGCCC 59.595 52.381 0.00 0.00 41.51 6.13
300 303 1.405463 GGCGGAGGAAATCACCATTTC 59.595 52.381 0.00 0.00 45.14 2.17
437 446 7.255242 GCTATGTATAAACACCATCAACATGCT 60.255 37.037 0.00 0.00 38.78 3.79
452 461 4.509616 ACCTGTGCAACGCTATGTATAAA 58.490 39.130 0.00 0.00 42.39 1.40
470 479 1.746470 GTATCGGAACCCCAAACCTG 58.254 55.000 0.00 0.00 0.00 4.00
510 523 5.585844 TGACCATGCACACATCATAGTTTAG 59.414 40.000 0.00 0.00 32.87 1.85
515 531 3.311596 CACTGACCATGCACACATCATAG 59.688 47.826 0.00 0.00 32.87 2.23
528 544 3.329542 ATTCGCGGGCACTGACCAT 62.330 57.895 6.13 0.00 36.31 3.55
529 545 4.015406 ATTCGCGGGCACTGACCA 62.015 61.111 6.13 0.00 36.31 4.02
544 560 1.671742 CCCTCTATACGCCCGCATT 59.328 57.895 0.00 0.00 0.00 3.56
545 561 2.943978 GCCCTCTATACGCCCGCAT 61.944 63.158 0.00 0.00 0.00 4.73
546 562 3.612681 GCCCTCTATACGCCCGCA 61.613 66.667 0.00 0.00 0.00 5.69
547 563 4.374645 GGCCCTCTATACGCCCGC 62.375 72.222 0.00 0.00 36.63 6.13
548 564 2.915659 TGGCCCTCTATACGCCCG 60.916 66.667 0.00 0.00 42.29 6.13
549 565 0.905337 ATCTGGCCCTCTATACGCCC 60.905 60.000 0.00 0.00 42.29 6.13
550 566 0.977395 AATCTGGCCCTCTATACGCC 59.023 55.000 0.00 0.00 43.32 5.68
551 567 2.417719 CAAATCTGGCCCTCTATACGC 58.582 52.381 0.00 0.00 0.00 4.42
552 568 2.417719 GCAAATCTGGCCCTCTATACG 58.582 52.381 0.00 0.00 0.00 3.06
553 569 2.784347 GGCAAATCTGGCCCTCTATAC 58.216 52.381 0.00 0.00 45.87 1.47
563 579 0.609131 ACCGGACTTGGCAAATCTGG 60.609 55.000 29.61 29.61 43.50 3.86
564 580 1.068333 CAACCGGACTTGGCAAATCTG 60.068 52.381 9.46 10.45 0.00 2.90
565 581 1.247567 CAACCGGACTTGGCAAATCT 58.752 50.000 9.46 0.00 0.00 2.40
566 582 0.958822 ACAACCGGACTTGGCAAATC 59.041 50.000 9.46 0.00 0.00 2.17
567 583 2.279935 TACAACCGGACTTGGCAAAT 57.720 45.000 9.46 0.00 0.00 2.32
568 584 1.950909 CTTACAACCGGACTTGGCAAA 59.049 47.619 9.46 0.00 0.00 3.68
569 585 1.134037 ACTTACAACCGGACTTGGCAA 60.134 47.619 9.46 0.00 0.00 4.52
570 586 0.470766 ACTTACAACCGGACTTGGCA 59.529 50.000 9.46 0.00 0.00 4.92
571 587 0.872388 CACTTACAACCGGACTTGGC 59.128 55.000 9.46 0.00 0.00 4.52
572 588 0.872388 GCACTTACAACCGGACTTGG 59.128 55.000 9.46 0.00 0.00 3.61
573 589 1.798813 GAGCACTTACAACCGGACTTG 59.201 52.381 9.46 5.71 0.00 3.16
574 590 1.692519 AGAGCACTTACAACCGGACTT 59.307 47.619 9.46 0.00 0.00 3.01
575 591 1.339097 AGAGCACTTACAACCGGACT 58.661 50.000 9.46 0.00 0.00 3.85
576 592 2.991866 GTTAGAGCACTTACAACCGGAC 59.008 50.000 9.46 0.00 0.00 4.79
577 593 2.352030 CGTTAGAGCACTTACAACCGGA 60.352 50.000 9.46 0.00 0.00 5.14
578 594 1.990563 CGTTAGAGCACTTACAACCGG 59.009 52.381 0.00 0.00 0.00 5.28
579 595 2.937591 TCGTTAGAGCACTTACAACCG 58.062 47.619 1.41 0.00 0.00 4.44
580 596 8.638685 TTATTATCGTTAGAGCACTTACAACC 57.361 34.615 1.41 0.00 0.00 3.77
581 597 9.897349 GTTTATTATCGTTAGAGCACTTACAAC 57.103 33.333 1.41 0.00 0.00 3.32
582 598 9.642327 TGTTTATTATCGTTAGAGCACTTACAA 57.358 29.630 1.41 0.00 0.00 2.41
583 599 9.297586 CTGTTTATTATCGTTAGAGCACTTACA 57.702 33.333 1.41 0.00 0.00 2.41
584 600 9.512435 TCTGTTTATTATCGTTAGAGCACTTAC 57.488 33.333 0.00 0.00 0.00 2.34
586 602 8.997621 TTCTGTTTATTATCGTTAGAGCACTT 57.002 30.769 0.00 0.00 0.00 3.16
587 603 8.997621 TTTCTGTTTATTATCGTTAGAGCACT 57.002 30.769 0.00 0.00 0.00 4.40
635 651 9.875691 GCATTTCTTTTTCCTTTTATACTCCAT 57.124 29.630 0.00 0.00 0.00 3.41
636 652 9.088987 AGCATTTCTTTTTCCTTTTATACTCCA 57.911 29.630 0.00 0.00 0.00 3.86
637 653 9.358872 CAGCATTTCTTTTTCCTTTTATACTCC 57.641 33.333 0.00 0.00 0.00 3.85
638 654 8.864024 GCAGCATTTCTTTTTCCTTTTATACTC 58.136 33.333 0.00 0.00 0.00 2.59
639 655 8.367156 TGCAGCATTTCTTTTTCCTTTTATACT 58.633 29.630 0.00 0.00 0.00 2.12
640 656 8.532977 TGCAGCATTTCTTTTTCCTTTTATAC 57.467 30.769 0.00 0.00 0.00 1.47
641 657 9.723601 ATTGCAGCATTTCTTTTTCCTTTTATA 57.276 25.926 0.00 0.00 0.00 0.98
642 658 8.625786 ATTGCAGCATTTCTTTTTCCTTTTAT 57.374 26.923 0.00 0.00 0.00 1.40
643 659 8.987890 GTATTGCAGCATTTCTTTTTCCTTTTA 58.012 29.630 0.00 0.00 0.00 1.52
644 660 6.947644 ATTGCAGCATTTCTTTTTCCTTTT 57.052 29.167 0.00 0.00 0.00 2.27
645 661 7.219322 AGTATTGCAGCATTTCTTTTTCCTTT 58.781 30.769 0.00 0.00 0.00 3.11
646 662 6.762333 AGTATTGCAGCATTTCTTTTTCCTT 58.238 32.000 0.00 0.00 0.00 3.36
647 663 6.350629 AGTATTGCAGCATTTCTTTTTCCT 57.649 33.333 0.00 0.00 0.00 3.36
648 664 6.824557 CAAGTATTGCAGCATTTCTTTTTCC 58.175 36.000 0.00 0.00 40.39 3.13
659 675 8.289618 CTTAAGTTTAAGTCAAGTATTGCAGCA 58.710 33.333 0.00 0.00 37.64 4.41
660 676 8.660968 CTTAAGTTTAAGTCAAGTATTGCAGC 57.339 34.615 3.93 0.00 37.64 5.25
674 690 8.365647 TGAACAGAGGGAGTACTTAAGTTTAAG 58.634 37.037 14.49 9.50 44.37 1.85
675 691 8.146412 GTGAACAGAGGGAGTACTTAAGTTTAA 58.854 37.037 14.49 0.00 0.00 1.52
676 692 7.508296 AGTGAACAGAGGGAGTACTTAAGTTTA 59.492 37.037 14.49 0.00 0.00 2.01
677 693 6.326843 AGTGAACAGAGGGAGTACTTAAGTTT 59.673 38.462 14.49 2.56 0.00 2.66
678 694 5.839606 AGTGAACAGAGGGAGTACTTAAGTT 59.160 40.000 14.49 0.00 0.00 2.66
679 695 5.395611 AGTGAACAGAGGGAGTACTTAAGT 58.604 41.667 13.68 13.68 0.00 2.24
680 696 5.986501 AGTGAACAGAGGGAGTACTTAAG 57.013 43.478 0.00 0.00 0.00 1.85
681 697 6.742559 AAAGTGAACAGAGGGAGTACTTAA 57.257 37.500 0.00 0.00 0.00 1.85
682 698 6.099269 ACAAAAGTGAACAGAGGGAGTACTTA 59.901 38.462 0.00 0.00 0.00 2.24
683 699 5.104485 ACAAAAGTGAACAGAGGGAGTACTT 60.104 40.000 0.00 0.00 0.00 2.24
684 700 4.409247 ACAAAAGTGAACAGAGGGAGTACT 59.591 41.667 0.00 0.00 0.00 2.73
685 701 4.704965 ACAAAAGTGAACAGAGGGAGTAC 58.295 43.478 0.00 0.00 0.00 2.73
686 702 6.325545 TCTTACAAAAGTGAACAGAGGGAGTA 59.674 38.462 0.00 0.00 34.13 2.59
687 703 3.933861 ACAAAAGTGAACAGAGGGAGT 57.066 42.857 0.00 0.00 0.00 3.85
688 704 5.467063 GTCTTACAAAAGTGAACAGAGGGAG 59.533 44.000 0.00 0.00 34.13 4.30
689 705 5.365619 GTCTTACAAAAGTGAACAGAGGGA 58.634 41.667 0.00 0.00 34.13 4.20
690 706 4.211374 CGTCTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 34.13 4.30
691 707 4.809426 ACGTCTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 34.13 3.69
692 708 5.968387 ACGTCTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 34.13 3.35
693 709 6.730960 AAACGTCTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 34.13 3.41
694 710 6.250527 CCAAAACGTCTTACAAAAGTGAACAG 59.749 38.462 0.00 0.00 34.13 3.16
695 711 6.072618 TCCAAAACGTCTTACAAAAGTGAACA 60.073 34.615 0.00 0.00 34.13 3.18
696 712 6.249893 GTCCAAAACGTCTTACAAAAGTGAAC 59.750 38.462 0.00 0.00 34.13 3.18
697 713 6.072618 TGTCCAAAACGTCTTACAAAAGTGAA 60.073 34.615 0.00 0.00 34.13 3.18
698 714 5.411977 TGTCCAAAACGTCTTACAAAAGTGA 59.588 36.000 0.00 0.00 34.13 3.41
699 715 5.632959 TGTCCAAAACGTCTTACAAAAGTG 58.367 37.500 0.00 0.00 34.13 3.16
700 716 5.675323 GCTGTCCAAAACGTCTTACAAAAGT 60.675 40.000 0.00 0.00 34.13 2.66
701 717 4.733405 GCTGTCCAAAACGTCTTACAAAAG 59.267 41.667 0.00 0.00 0.00 2.27
702 718 4.156190 TGCTGTCCAAAACGTCTTACAAAA 59.844 37.500 0.00 0.00 0.00 2.44
703 719 3.690139 TGCTGTCCAAAACGTCTTACAAA 59.310 39.130 0.00 0.00 0.00 2.83
704 720 3.271729 TGCTGTCCAAAACGTCTTACAA 58.728 40.909 0.00 0.00 0.00 2.41
705 721 2.869801 CTGCTGTCCAAAACGTCTTACA 59.130 45.455 0.00 0.00 0.00 2.41
706 722 3.128349 TCTGCTGTCCAAAACGTCTTAC 58.872 45.455 0.00 0.00 0.00 2.34
707 723 3.462483 TCTGCTGTCCAAAACGTCTTA 57.538 42.857 0.00 0.00 0.00 2.10
708 724 2.325583 TCTGCTGTCCAAAACGTCTT 57.674 45.000 0.00 0.00 0.00 3.01
709 725 2.325583 TTCTGCTGTCCAAAACGTCT 57.674 45.000 0.00 0.00 0.00 4.18
710 726 3.626028 ATTTCTGCTGTCCAAAACGTC 57.374 42.857 0.00 0.00 0.00 4.34
711 727 3.380004 TCAATTTCTGCTGTCCAAAACGT 59.620 39.130 0.00 0.00 0.00 3.99
712 728 3.963665 TCAATTTCTGCTGTCCAAAACG 58.036 40.909 0.00 0.00 0.00 3.60
713 729 3.737774 GCTCAATTTCTGCTGTCCAAAAC 59.262 43.478 0.00 0.00 0.00 2.43
714 730 3.638160 AGCTCAATTTCTGCTGTCCAAAA 59.362 39.130 0.00 0.00 35.54 2.44
715 731 3.005050 CAGCTCAATTTCTGCTGTCCAAA 59.995 43.478 13.07 0.00 46.23 3.28
716 732 2.555325 CAGCTCAATTTCTGCTGTCCAA 59.445 45.455 13.07 0.00 46.23 3.53
717 733 2.156917 CAGCTCAATTTCTGCTGTCCA 58.843 47.619 13.07 0.00 46.23 4.02
718 734 2.915738 CAGCTCAATTTCTGCTGTCC 57.084 50.000 13.07 0.00 46.23 4.02
722 738 4.829492 ACCTAAAACAGCTCAATTTCTGCT 59.171 37.500 0.00 0.00 37.56 4.24
723 739 4.919754 CACCTAAAACAGCTCAATTTCTGC 59.080 41.667 0.00 0.00 33.80 4.26
724 740 6.076981 ACACCTAAAACAGCTCAATTTCTG 57.923 37.500 0.00 0.00 36.45 3.02
725 741 6.715347 AACACCTAAAACAGCTCAATTTCT 57.285 33.333 0.00 0.00 0.00 2.52
726 742 8.515414 AGATAACACCTAAAACAGCTCAATTTC 58.485 33.333 0.00 0.00 0.00 2.17
727 743 8.409358 AGATAACACCTAAAACAGCTCAATTT 57.591 30.769 0.00 0.00 0.00 1.82
728 744 8.409358 AAGATAACACCTAAAACAGCTCAATT 57.591 30.769 0.00 0.00 0.00 2.32
729 745 9.515226 TTAAGATAACACCTAAAACAGCTCAAT 57.485 29.630 0.00 0.00 0.00 2.57
730 746 8.911918 TTAAGATAACACCTAAAACAGCTCAA 57.088 30.769 0.00 0.00 0.00 3.02
731 747 8.911918 TTTAAGATAACACCTAAAACAGCTCA 57.088 30.769 0.00 0.00 0.00 4.26
732 748 9.774742 CATTTAAGATAACACCTAAAACAGCTC 57.225 33.333 0.00 0.00 0.00 4.09
733 749 9.297037 ACATTTAAGATAACACCTAAAACAGCT 57.703 29.630 0.00 0.00 0.00 4.24
734 750 9.556030 GACATTTAAGATAACACCTAAAACAGC 57.444 33.333 0.00 0.00 0.00 4.40
742 758 9.498176 ACGTTTTAGACATTTAAGATAACACCT 57.502 29.630 0.00 0.00 0.00 4.00
743 759 9.750882 GACGTTTTAGACATTTAAGATAACACC 57.249 33.333 0.00 0.00 0.00 4.16
768 784 8.846943 TTGCTAAATCATCAGTCTTTGTAAGA 57.153 30.769 0.00 0.00 34.51 2.10
769 785 9.897744 TTTTGCTAAATCATCAGTCTTTGTAAG 57.102 29.630 0.00 0.00 0.00 2.34
770 786 9.677567 GTTTTGCTAAATCATCAGTCTTTGTAA 57.322 29.630 0.00 0.00 0.00 2.41
771 787 8.296713 GGTTTTGCTAAATCATCAGTCTTTGTA 58.703 33.333 0.00 0.00 0.00 2.41
772 788 7.147976 GGTTTTGCTAAATCATCAGTCTTTGT 58.852 34.615 0.00 0.00 0.00 2.83
773 789 6.306356 CGGTTTTGCTAAATCATCAGTCTTTG 59.694 38.462 4.79 0.00 0.00 2.77
774 790 6.016276 ACGGTTTTGCTAAATCATCAGTCTTT 60.016 34.615 4.79 0.00 0.00 2.52
775 791 5.473504 ACGGTTTTGCTAAATCATCAGTCTT 59.526 36.000 4.79 0.00 0.00 3.01
776 792 5.003804 ACGGTTTTGCTAAATCATCAGTCT 58.996 37.500 4.79 0.00 0.00 3.24
777 793 5.296813 ACGGTTTTGCTAAATCATCAGTC 57.703 39.130 4.79 0.00 0.00 3.51
778 794 5.705609 AACGGTTTTGCTAAATCATCAGT 57.294 34.783 4.79 0.00 0.00 3.41
779 795 6.148948 TCAAACGGTTTTGCTAAATCATCAG 58.851 36.000 2.79 0.00 41.78 2.90
780 796 6.078202 TCAAACGGTTTTGCTAAATCATCA 57.922 33.333 2.79 0.00 41.78 3.07
781 797 7.401484 TTTCAAACGGTTTTGCTAAATCATC 57.599 32.000 2.79 0.00 41.78 2.92
858 874 2.866762 GACAGACACACAGACCTGTTTC 59.133 50.000 0.00 0.00 42.83 2.78
862 878 0.385751 ACGACAGACACACAGACCTG 59.614 55.000 0.00 0.00 0.00 4.00
866 882 1.607148 CCACTACGACAGACACACAGA 59.393 52.381 0.00 0.00 0.00 3.41
874 890 3.082548 CCTCTTTCTCCACTACGACAGA 58.917 50.000 0.00 0.00 0.00 3.41
876 892 1.544691 GCCTCTTTCTCCACTACGACA 59.455 52.381 0.00 0.00 0.00 4.35
878 894 0.809385 CGCCTCTTTCTCCACTACGA 59.191 55.000 0.00 0.00 0.00 3.43
879 895 0.809385 TCGCCTCTTTCTCCACTACG 59.191 55.000 0.00 0.00 0.00 3.51
880 896 2.093106 TCTCGCCTCTTTCTCCACTAC 58.907 52.381 0.00 0.00 0.00 2.73
881 897 2.509166 TCTCGCCTCTTTCTCCACTA 57.491 50.000 0.00 0.00 0.00 2.74
882 898 1.633774 TTCTCGCCTCTTTCTCCACT 58.366 50.000 0.00 0.00 0.00 4.00
883 899 2.028930 TCTTTCTCGCCTCTTTCTCCAC 60.029 50.000 0.00 0.00 0.00 4.02
884 900 2.232452 CTCTTTCTCGCCTCTTTCTCCA 59.768 50.000 0.00 0.00 0.00 3.86
885 901 2.494073 TCTCTTTCTCGCCTCTTTCTCC 59.506 50.000 0.00 0.00 0.00 3.71
886 902 3.442273 TCTCTCTTTCTCGCCTCTTTCTC 59.558 47.826 0.00 0.00 0.00 2.87
887 903 3.426615 TCTCTCTTTCTCGCCTCTTTCT 58.573 45.455 0.00 0.00 0.00 2.52
888 904 3.428862 CCTCTCTCTTTCTCGCCTCTTTC 60.429 52.174 0.00 0.00 0.00 2.62
889 905 2.495669 CCTCTCTCTTTCTCGCCTCTTT 59.504 50.000 0.00 0.00 0.00 2.52
890 906 2.099405 CCTCTCTCTTTCTCGCCTCTT 58.901 52.381 0.00 0.00 0.00 2.85
891 907 1.684869 CCCTCTCTCTTTCTCGCCTCT 60.685 57.143 0.00 0.00 0.00 3.69
892 908 0.744281 CCCTCTCTCTTTCTCGCCTC 59.256 60.000 0.00 0.00 0.00 4.70
893 909 0.686112 CCCCTCTCTCTTTCTCGCCT 60.686 60.000 0.00 0.00 0.00 5.52
894 910 1.681486 CCCCCTCTCTCTTTCTCGCC 61.681 65.000 0.00 0.00 0.00 5.54
895 911 1.819905 CCCCCTCTCTCTTTCTCGC 59.180 63.158 0.00 0.00 0.00 5.03
913 929 3.721706 CAGGGGTGGTCTCTGCCC 61.722 72.222 0.00 0.00 41.62 5.36
914 930 2.930562 ACAGGGGTGGTCTCTGCC 60.931 66.667 0.00 0.00 32.19 4.85
915 931 2.348998 CACAGGGGTGGTCTCTGC 59.651 66.667 0.00 0.00 41.45 4.26
916 932 2.348998 GCACAGGGGTGGTCTCTG 59.651 66.667 0.00 0.00 45.38 3.35
924 940 0.412244 TAGGAGTACAGCACAGGGGT 59.588 55.000 0.00 0.00 0.00 4.95
925 941 1.794714 ATAGGAGTACAGCACAGGGG 58.205 55.000 0.00 0.00 0.00 4.79
926 942 2.223829 CGAATAGGAGTACAGCACAGGG 60.224 54.545 0.00 0.00 0.00 4.45
927 943 2.799917 GCGAATAGGAGTACAGCACAGG 60.800 54.545 0.00 0.00 0.00 4.00
928 944 2.464865 GCGAATAGGAGTACAGCACAG 58.535 52.381 0.00 0.00 0.00 3.66
929 945 1.136305 GGCGAATAGGAGTACAGCACA 59.864 52.381 0.00 0.00 0.00 4.57
930 946 1.854227 GGCGAATAGGAGTACAGCAC 58.146 55.000 0.00 0.00 0.00 4.40
931 947 0.384309 CGGCGAATAGGAGTACAGCA 59.616 55.000 0.00 0.00 0.00 4.41
932 948 0.318784 CCGGCGAATAGGAGTACAGC 60.319 60.000 9.30 0.00 0.00 4.40
933 949 1.315690 TCCGGCGAATAGGAGTACAG 58.684 55.000 9.30 0.00 31.95 2.74
934 950 1.766494 TTCCGGCGAATAGGAGTACA 58.234 50.000 9.30 0.00 37.88 2.90
935 951 2.877043 TTTCCGGCGAATAGGAGTAC 57.123 50.000 9.30 0.00 37.88 2.73
936 952 2.030540 CGATTTCCGGCGAATAGGAGTA 60.031 50.000 9.30 0.00 37.88 2.59
937 953 1.269621 CGATTTCCGGCGAATAGGAGT 60.270 52.381 9.30 0.00 37.88 3.85
938 954 1.269621 ACGATTTCCGGCGAATAGGAG 60.270 52.381 9.30 0.00 43.93 3.69
939 955 0.748450 ACGATTTCCGGCGAATAGGA 59.252 50.000 9.30 0.00 43.93 2.94
940 956 1.137513 GACGATTTCCGGCGAATAGG 58.862 55.000 9.30 0.00 43.93 2.57
948 964 1.394618 AGAGAGGAGACGATTTCCGG 58.605 55.000 0.00 0.00 43.93 5.14
949 965 3.512033 AAAGAGAGGAGACGATTTCCG 57.488 47.619 0.00 0.00 45.44 4.30
950 966 5.483811 AGAAAAAGAGAGGAGACGATTTCC 58.516 41.667 0.00 0.00 34.83 3.13
951 967 5.579119 GGAGAAAAAGAGAGGAGACGATTTC 59.421 44.000 0.00 0.00 0.00 2.17
952 968 5.483811 GGAGAAAAAGAGAGGAGACGATTT 58.516 41.667 0.00 0.00 0.00 2.17
953 969 4.381079 CGGAGAAAAAGAGAGGAGACGATT 60.381 45.833 0.00 0.00 0.00 3.34
954 970 3.129638 CGGAGAAAAAGAGAGGAGACGAT 59.870 47.826 0.00 0.00 0.00 3.73
955 971 2.488545 CGGAGAAAAAGAGAGGAGACGA 59.511 50.000 0.00 0.00 0.00 4.20
956 972 2.416162 CCGGAGAAAAAGAGAGGAGACG 60.416 54.545 0.00 0.00 0.00 4.18
957 973 2.675603 GCCGGAGAAAAAGAGAGGAGAC 60.676 54.545 5.05 0.00 0.00 3.36
958 974 1.550976 GCCGGAGAAAAAGAGAGGAGA 59.449 52.381 5.05 0.00 0.00 3.71
959 975 1.406205 GGCCGGAGAAAAAGAGAGGAG 60.406 57.143 5.05 0.00 0.00 3.69
960 976 0.613777 GGCCGGAGAAAAAGAGAGGA 59.386 55.000 5.05 0.00 0.00 3.71
961 977 0.741221 CGGCCGGAGAAAAAGAGAGG 60.741 60.000 20.10 0.00 0.00 3.69
962 978 1.362406 GCGGCCGGAGAAAAAGAGAG 61.362 60.000 29.38 0.00 0.00 3.20
963 979 1.375523 GCGGCCGGAGAAAAAGAGA 60.376 57.895 29.38 0.00 0.00 3.10
996 1012 2.438434 GTGGGGGTCGCCATTGAG 60.438 66.667 9.94 0.00 0.00 3.02
1009 1025 1.221840 CGAGATGAGGGTTGGTGGG 59.778 63.158 0.00 0.00 0.00 4.61
1044 1060 2.281539 TACCTATTGCGAGATCCCGA 57.718 50.000 0.00 0.00 0.00 5.14
1045 1061 3.057734 GTTTACCTATTGCGAGATCCCG 58.942 50.000 0.00 0.00 0.00 5.14
1046 1062 4.338379 AGTTTACCTATTGCGAGATCCC 57.662 45.455 0.00 0.00 0.00 3.85
1047 1063 6.086785 AGTAGTTTACCTATTGCGAGATCC 57.913 41.667 0.00 0.00 0.00 3.36
1048 1064 6.979238 ACAAGTAGTTTACCTATTGCGAGATC 59.021 38.462 0.00 0.00 0.00 2.75
1049 1065 6.875076 ACAAGTAGTTTACCTATTGCGAGAT 58.125 36.000 0.00 0.00 0.00 2.75
1053 1069 6.963049 AGAACAAGTAGTTTACCTATTGCG 57.037 37.500 0.00 0.00 41.51 4.85
1067 1083 4.640201 ACTGCAAGAAAGCAAGAACAAGTA 59.360 37.500 0.00 0.00 45.13 2.24
1110 1129 2.899345 TTCGTGGCCCGTGATGATCG 62.899 60.000 12.46 0.00 37.94 3.69
1171 1202 2.341101 TTGACCCTCGCCTCTCGTC 61.341 63.158 0.00 0.00 39.67 4.20
1185 1216 2.433436 GGTTCCCTACCACATGTTGAC 58.567 52.381 3.55 0.00 46.92 3.18
1220 1251 4.680237 TGCGAAGGCCACCAGTCG 62.680 66.667 5.01 6.98 38.85 4.18
1221 1252 2.281484 TTGCGAAGGCCACCAGTC 60.281 61.111 5.01 0.00 38.85 3.51
1222 1253 2.594592 GTTGCGAAGGCCACCAGT 60.595 61.111 5.01 0.00 38.85 4.00
1223 1254 1.526575 AATGTTGCGAAGGCCACCAG 61.527 55.000 5.01 0.00 38.85 4.00
1224 1255 1.530419 AATGTTGCGAAGGCCACCA 60.530 52.632 5.01 0.00 38.85 4.17
1225 1256 1.080569 CAATGTTGCGAAGGCCACC 60.081 57.895 5.01 0.00 38.85 4.61
1226 1257 0.387239 GACAATGTTGCGAAGGCCAC 60.387 55.000 5.01 0.00 38.85 5.01
1227 1258 0.537143 AGACAATGTTGCGAAGGCCA 60.537 50.000 5.01 0.00 38.85 5.36
1234 1265 2.328473 TCGAGAAGAGACAATGTTGCG 58.672 47.619 0.00 0.00 0.00 4.85
1254 1285 3.667360 ACAACTTTAGGTAATCGGCGTT 58.333 40.909 6.85 3.22 0.00 4.84
1255 1286 3.256558 GACAACTTTAGGTAATCGGCGT 58.743 45.455 6.85 0.00 0.00 5.68
1257 1288 3.256558 ACGACAACTTTAGGTAATCGGC 58.743 45.455 0.00 0.00 38.75 5.54
1284 1337 0.466189 ATTGCTAATGACCGGGGCTG 60.466 55.000 6.32 0.00 0.00 4.85
1285 1338 0.258774 AATTGCTAATGACCGGGGCT 59.741 50.000 6.32 0.00 0.00 5.19
1412 1478 0.670546 ATGACGCTCGGTCCAAACTG 60.671 55.000 0.00 0.00 45.46 3.16
1478 1610 2.284552 TTGGGGATGGGCCTTTGC 60.285 61.111 4.53 0.00 36.66 3.68
1479 1611 1.229145 TGTTGGGGATGGGCCTTTG 60.229 57.895 4.53 0.00 36.66 2.77
1480 1612 1.079073 CTGTTGGGGATGGGCCTTT 59.921 57.895 4.53 0.00 36.66 3.11
1481 1613 2.772924 CTGTTGGGGATGGGCCTT 59.227 61.111 4.53 0.00 36.66 4.35
1482 1614 4.066139 GCTGTTGGGGATGGGCCT 62.066 66.667 4.53 0.00 36.66 5.19
1483 1615 4.380945 TGCTGTTGGGGATGGGCC 62.381 66.667 0.00 0.00 0.00 5.80
1484 1616 3.070576 GTGCTGTTGGGGATGGGC 61.071 66.667 0.00 0.00 0.00 5.36
1485 1617 1.679977 CTGTGCTGTTGGGGATGGG 60.680 63.158 0.00 0.00 0.00 4.00
1490 1622 3.663176 CGTGCTGTGCTGTTGGGG 61.663 66.667 0.00 0.00 0.00 4.96
1491 1623 2.591429 TCGTGCTGTGCTGTTGGG 60.591 61.111 0.00 0.00 0.00 4.12
1499 1631 2.579201 CCCCCTAGTCGTGCTGTG 59.421 66.667 0.00 0.00 0.00 3.66
1500 1632 3.391382 GCCCCCTAGTCGTGCTGT 61.391 66.667 0.00 0.00 0.00 4.40
1501 1633 4.162690 GGCCCCCTAGTCGTGCTG 62.163 72.222 0.00 0.00 0.00 4.41
1505 1637 1.988406 GAGTTGGCCCCCTAGTCGT 60.988 63.158 0.00 0.00 0.00 4.34
1507 1639 0.988678 ATGGAGTTGGCCCCCTAGTC 60.989 60.000 0.00 0.00 0.00 2.59
1513 1645 2.043953 GGACATGGAGTTGGCCCC 60.044 66.667 0.00 0.00 39.05 5.80
1515 1647 0.251787 AAAGGGACATGGAGTTGGCC 60.252 55.000 0.00 0.00 44.81 5.36
1516 1648 2.369394 CTAAAGGGACATGGAGTTGGC 58.631 52.381 0.00 0.00 0.00 4.52
1517 1649 2.025887 AGCTAAAGGGACATGGAGTTGG 60.026 50.000 0.00 0.00 0.00 3.77
1518 1650 3.012518 CAGCTAAAGGGACATGGAGTTG 58.987 50.000 0.00 0.00 0.00 3.16
1520 1652 2.269940 ACAGCTAAAGGGACATGGAGT 58.730 47.619 0.00 0.00 0.00 3.85
1521 1653 3.452627 ACTACAGCTAAAGGGACATGGAG 59.547 47.826 0.00 0.00 0.00 3.86
1522 1654 3.197766 CACTACAGCTAAAGGGACATGGA 59.802 47.826 0.00 0.00 0.00 3.41
1524 1656 4.207891 ACACTACAGCTAAAGGGACATG 57.792 45.455 3.84 0.00 0.00 3.21
1526 1658 3.901844 AGAACACTACAGCTAAAGGGACA 59.098 43.478 3.84 0.00 0.00 4.02
1527 1659 4.538746 AGAACACTACAGCTAAAGGGAC 57.461 45.455 3.84 0.00 0.00 4.46
1529 1661 5.817816 CCAATAGAACACTACAGCTAAAGGG 59.182 44.000 0.00 0.00 0.00 3.95
1530 1662 6.407202 ACCAATAGAACACTACAGCTAAAGG 58.593 40.000 0.00 0.00 0.00 3.11
1531 1663 8.251721 AGTACCAATAGAACACTACAGCTAAAG 58.748 37.037 0.00 0.00 0.00 1.85
1532 1664 8.130671 AGTACCAATAGAACACTACAGCTAAA 57.869 34.615 0.00 0.00 0.00 1.85
1533 1665 7.713734 AGTACCAATAGAACACTACAGCTAA 57.286 36.000 0.00 0.00 0.00 3.09
1534 1666 7.011763 CGTAGTACCAATAGAACACTACAGCTA 59.988 40.741 9.95 0.00 40.92 3.32
1535 1667 6.183360 CGTAGTACCAATAGAACACTACAGCT 60.183 42.308 9.95 0.00 40.92 4.24
1536 1668 5.970023 CGTAGTACCAATAGAACACTACAGC 59.030 44.000 9.95 0.00 40.92 4.40
1537 1669 7.065563 ACTCGTAGTACCAATAGAACACTACAG 59.934 40.741 9.95 8.56 40.92 2.74
1538 1670 6.881065 ACTCGTAGTACCAATAGAACACTACA 59.119 38.462 9.95 0.00 40.92 2.74
1539 1671 7.313951 ACTCGTAGTACCAATAGAACACTAC 57.686 40.000 0.00 0.00 38.67 2.73
1540 1672 8.260818 ACTACTCGTAGTACCAATAGAACACTA 58.739 37.037 7.91 0.00 43.98 2.74
1541 1673 7.108847 ACTACTCGTAGTACCAATAGAACACT 58.891 38.462 7.91 0.00 43.98 3.55
1542 1674 7.313951 ACTACTCGTAGTACCAATAGAACAC 57.686 40.000 7.91 0.00 43.98 3.32
1556 1688 6.060788 AGTCCCCAGTTTATACTACTCGTAG 58.939 44.000 2.66 2.66 39.04 3.51
1562 1694 4.650131 AGCAGAGTCCCCAGTTTATACTAC 59.350 45.833 0.00 0.00 31.96 2.73
1577 1709 1.269988 TGCACTTGTGAGAGCAGAGTC 60.270 52.381 4.79 0.00 43.19 3.36
1589 1721 2.092968 TGTGTTTCTCCTCTGCACTTGT 60.093 45.455 0.00 0.00 0.00 3.16
1620 1754 6.109359 AGACATGCCTTCATCTAAACTGTAC 58.891 40.000 0.00 0.00 0.00 2.90
1638 1772 5.453567 TCTTCATATGGACGGTAGACATG 57.546 43.478 2.13 0.00 0.00 3.21
1639 1773 5.775195 TGATCTTCATATGGACGGTAGACAT 59.225 40.000 2.13 0.00 0.00 3.06
1640 1774 5.137551 TGATCTTCATATGGACGGTAGACA 58.862 41.667 2.13 0.00 0.00 3.41
1641 1775 5.241949 ACTGATCTTCATATGGACGGTAGAC 59.758 44.000 2.13 0.00 0.00 2.59
1642 1776 5.386060 ACTGATCTTCATATGGACGGTAGA 58.614 41.667 2.13 0.00 0.00 2.59
1643 1777 5.713792 ACTGATCTTCATATGGACGGTAG 57.286 43.478 2.13 0.00 0.00 3.18
1644 1778 7.002276 TCTAACTGATCTTCATATGGACGGTA 58.998 38.462 2.13 0.00 0.00 4.02
1645 1779 5.833667 TCTAACTGATCTTCATATGGACGGT 59.166 40.000 2.13 0.00 0.00 4.83
1646 1780 6.332735 TCTAACTGATCTTCATATGGACGG 57.667 41.667 2.13 0.00 0.00 4.79
1695 1830 4.891756 CCCAGTAGCAGGAAATTGAATCAT 59.108 41.667 0.00 0.00 0.00 2.45
1716 1851 2.156098 TCACGGTAAATTTGCTGACCC 58.844 47.619 20.34 1.43 0.00 4.46
1849 1988 4.849111 GCATTCAGCTGTTGTAGTAGAC 57.151 45.455 14.67 0.00 41.15 2.59
1899 2049 9.305925 GATAAAAATCCTTAATGGCTTGAACTG 57.694 33.333 0.00 0.00 35.26 3.16
1908 2058 7.114811 CCGAATTGCGATAAAAATCCTTAATGG 59.885 37.037 0.00 0.00 44.57 3.16
1934 2084 5.175859 TGTAATGTTCTCTTCGATTGTCCC 58.824 41.667 0.00 0.00 0.00 4.46
1943 2093 5.819901 AGCCTAGCAATGTAATGTTCTCTTC 59.180 40.000 0.00 0.00 0.00 2.87
1956 2106 4.392445 GCTTCTCATCATAGCCTAGCAATG 59.608 45.833 0.00 0.00 0.00 2.82
2012 2162 3.311322 CCAACTTTGTACGAGCACTTGAA 59.689 43.478 0.00 0.00 0.00 2.69
2035 2185 3.683365 AACCTGTTGAATTTGATGGGC 57.317 42.857 0.00 0.00 0.00 5.36
2040 2190 7.039784 CCCTCTTGATAAACCTGTTGAATTTGA 60.040 37.037 0.00 0.00 0.00 2.69
2041 2191 7.092716 CCCTCTTGATAAACCTGTTGAATTTG 58.907 38.462 0.00 0.00 0.00 2.32
2042 2192 6.211384 CCCCTCTTGATAAACCTGTTGAATTT 59.789 38.462 0.00 0.00 0.00 1.82
2080 2230 2.797177 AGTCTGAAGCCCAATCCTTC 57.203 50.000 0.00 0.00 39.26 3.46
2124 2274 2.012673 CAACTTGGATAGCAGCAGGAC 58.987 52.381 0.00 0.00 0.00 3.85
2515 2669 8.879759 CGCATATAGGAGTTTTCTGTTTTAAGA 58.120 33.333 0.00 0.00 0.00 2.10
2720 2879 6.370994 TCGTTTAGGTCGCACCAATTTAATTA 59.629 34.615 7.86 0.00 41.95 1.40
2907 3070 7.753309 TGGCAACACTACAAAATATACTTGT 57.247 32.000 7.91 7.91 46.17 3.16
3050 3230 3.552684 CCTGTACAAACCCAATGCAAGTG 60.553 47.826 0.00 0.00 0.00 3.16
3051 3231 2.627699 CCTGTACAAACCCAATGCAAGT 59.372 45.455 0.00 0.00 0.00 3.16
3052 3232 2.627699 ACCTGTACAAACCCAATGCAAG 59.372 45.455 0.00 0.00 0.00 4.01
3053 3233 2.672098 ACCTGTACAAACCCAATGCAA 58.328 42.857 0.00 0.00 0.00 4.08
3179 3367 9.030301 GTAACAAACCCAATTTATATGCACATC 57.970 33.333 0.00 0.00 0.00 3.06
3389 3627 4.645535 TCAAAGCACTCTGTAGCAATCTT 58.354 39.130 0.00 0.00 0.00 2.40
3556 3795 0.317479 GACACTTGCTGGGAGTACGT 59.683 55.000 0.00 0.00 0.00 3.57
3681 3923 5.292101 GTCATTCGGAAAGTCCTTGTCATAG 59.708 44.000 0.00 0.00 33.30 2.23
3944 4321 1.227002 GACTAGCCTGCAGGTACGC 60.227 63.158 32.81 18.84 37.57 4.42
3952 4329 0.978146 TCCCTCCAAGACTAGCCTGC 60.978 60.000 0.00 0.00 0.00 4.85
4087 4466 0.249120 TACATGGACTTGGACAGCCG 59.751 55.000 0.00 0.00 36.79 5.52
4161 4544 2.042686 ACGCTTGTATGCCATGTCAT 57.957 45.000 0.00 0.00 0.00 3.06
4173 4556 4.760204 ACTTGAGGCTTAATTAACGCTTGT 59.240 37.500 14.91 4.63 0.00 3.16
4174 4557 5.296813 ACTTGAGGCTTAATTAACGCTTG 57.703 39.130 14.91 0.13 0.00 4.01
4175 4558 6.598064 ACATACTTGAGGCTTAATTAACGCTT 59.402 34.615 14.91 10.14 0.00 4.68
4176 4559 6.113411 ACATACTTGAGGCTTAATTAACGCT 58.887 36.000 14.91 5.88 0.00 5.07
4276 4675 6.435430 AACACAGCGATGCTTAATTAATGA 57.565 33.333 0.00 0.00 36.40 2.57
4297 4696 3.241995 GCGTCGAATACAGACATCCAAAC 60.242 47.826 0.00 0.00 38.46 2.93
4303 4702 2.286831 CGTAGGCGTCGAATACAGACAT 60.287 50.000 0.00 0.00 38.46 3.06
4339 4740 1.522668 TCCACGCTGAATTGGAACTG 58.477 50.000 0.00 0.00 39.04 3.16
4355 4756 6.756542 CGTATTCATGTCTATGACAGTTTCCA 59.243 38.462 6.55 0.00 46.04 3.53
4477 4878 8.046708 TGGTTTGATGTCTATACTAATGTTGCT 58.953 33.333 0.00 0.00 0.00 3.91
4516 4917 7.482654 ACAATCATCCAAATATAGTCACACG 57.517 36.000 0.00 0.00 0.00 4.49
4568 4969 8.585471 ATTATGTGATGTTGTCTTGGATTTCT 57.415 30.769 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.