Multiple sequence alignment - TraesCS3A01G500300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G500300 chr3A 100.000 3107 0 0 1 3107 724749344 724746238 0.000000e+00 5738.0
1 TraesCS3A01G500300 chr3A 99.236 2095 15 1 1 2095 745254345 745256438 0.000000e+00 3779.0
2 TraesCS3A01G500300 chr3A 84.169 878 129 9 1457 2326 725234246 725235121 0.000000e+00 843.0
3 TraesCS3A01G500300 chr3A 93.972 282 17 0 1177 1458 190094897 190095178 7.960000e-116 427.0
4 TraesCS3A01G500300 chr3A 84.536 388 43 6 2573 2949 724829185 724828804 4.890000e-98 368.0
5 TraesCS3A01G500300 chr3A 73.718 624 139 22 567 1183 725425813 725426418 1.450000e-53 220.0
6 TraesCS3A01G500300 chr3A 85.864 191 14 8 2382 2568 724829786 724829605 1.140000e-44 191.0
7 TraesCS3A01G500300 chr3D 91.849 1325 80 12 1454 2758 593769779 593768463 0.000000e+00 1823.0
8 TraesCS3A01G500300 chr3D 92.295 623 44 2 565 1183 593770396 593769774 0.000000e+00 881.0
9 TraesCS3A01G500300 chr3D 85.360 847 120 3 1454 2298 594510808 594511652 0.000000e+00 874.0
10 TraesCS3A01G500300 chr3D 83.276 879 131 12 1458 2326 593910626 593909754 0.000000e+00 795.0
11 TraesCS3A01G500300 chr3D 86.151 621 85 1 565 1184 594510194 594510814 0.000000e+00 669.0
12 TraesCS3A01G500300 chr3D 87.042 409 36 6 2552 2949 594240565 594240967 2.200000e-121 446.0
13 TraesCS3A01G500300 chr3D 83.990 406 48 6 2555 2949 594073210 594072811 1.050000e-99 374.0
14 TraesCS3A01G500300 chr3D 83.706 313 45 5 1 311 28279094 28278786 1.090000e-74 291.0
15 TraesCS3A01G500300 chr3D 85.864 191 14 8 2382 2568 594073795 594073614 1.140000e-44 191.0
16 TraesCS3A01G500300 chr3D 85.864 191 14 8 2382 2568 594239977 594240158 1.140000e-44 191.0
17 TraesCS3A01G500300 chr3D 95.122 41 2 0 2824 2864 593768460 593768420 7.190000e-07 65.8
18 TraesCS3A01G500300 chrUn 92.405 948 64 3 1454 2397 288266156 288265213 0.000000e+00 1345.0
19 TraesCS3A01G500300 chrUn 91.667 948 71 3 1454 2397 41881693 41882636 0.000000e+00 1306.0
20 TraesCS3A01G500300 chrUn 93.042 618 42 1 567 1183 41881081 41881698 0.000000e+00 902.0
21 TraesCS3A01G500300 chrUn 92.880 618 43 1 567 1183 288266768 288266151 0.000000e+00 896.0
22 TraesCS3A01G500300 chrUn 87.097 496 49 3 2421 2901 41882934 41883429 5.860000e-152 547.0
23 TraesCS3A01G500300 chrUn 86.815 493 49 4 2424 2901 288264904 288264413 1.270000e-148 536.0
24 TraesCS3A01G500300 chr1D 95.944 567 21 2 1 565 66272345 66271779 0.000000e+00 918.0
25 TraesCS3A01G500300 chr1D 93.596 203 12 1 363 564 66276924 66276722 5.040000e-78 302.0
26 TraesCS3A01G500300 chr3B 84.607 877 124 7 1454 2327 798200682 798201550 0.000000e+00 861.0
27 TraesCS3A01G500300 chr3B 84.970 825 106 16 1458 2269 798157879 798158698 0.000000e+00 821.0
28 TraesCS3A01G500300 chr3B 83.819 618 93 6 567 1183 798200076 798200687 5.780000e-162 580.0
29 TraesCS3A01G500300 chr3B 86.124 418 38 8 2552 2958 797462432 797462840 1.710000e-117 433.0
30 TraesCS3A01G500300 chr3B 85.340 191 15 8 2382 2568 797461845 797462026 5.290000e-43 185.0
31 TraesCS3A01G500300 chr4A 92.945 567 34 6 1 564 598267712 598267149 0.000000e+00 821.0
32 TraesCS3A01G500300 chr4A 93.295 522 33 2 43 564 698424311 698424830 0.000000e+00 769.0
33 TraesCS3A01G500300 chr4A 94.526 274 15 0 1182 1455 284950058 284950331 1.030000e-114 424.0
34 TraesCS3A01G500300 chr4A 93.796 274 17 0 1182 1455 24512540 24512267 2.230000e-111 412.0
35 TraesCS3A01G500300 chr4A 85.985 264 36 1 17 280 515470540 515470278 6.560000e-72 281.0
36 TraesCS3A01G500300 chr4A 91.667 204 14 3 363 564 598285497 598285295 2.360000e-71 279.0
37 TraesCS3A01G500300 chr4A 81.752 274 47 3 6 277 610030255 610030527 3.120000e-55 226.0
38 TraesCS3A01G500300 chr7A 94.526 274 15 0 1182 1455 660417406 660417133 1.030000e-114 424.0
39 TraesCS3A01G500300 chr5A 94.182 275 16 0 1181 1455 284692439 284692713 1.330000e-113 420.0
40 TraesCS3A01G500300 chr5A 93.796 274 17 0 1182 1455 328662525 328662798 2.230000e-111 412.0
41 TraesCS3A01G500300 chr2A 93.455 275 18 0 1181 1455 81722789 81723063 2.880000e-110 409.0
42 TraesCS3A01G500300 chr2A 83.215 423 39 17 1 415 28172100 28172498 2.950000e-95 359.0
43 TraesCS3A01G500300 chr2B 92.857 280 20 0 1181 1460 36444088 36443809 1.040000e-109 407.0
44 TraesCS3A01G500300 chr2D 89.456 294 29 2 1 292 562837959 562838252 1.360000e-98 370.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G500300 chr3A 724746238 724749344 3106 True 5738.000000 5738 100.000000 1 3107 1 chr3A.!!$R1 3106
1 TraesCS3A01G500300 chr3A 745254345 745256438 2093 False 3779.000000 3779 99.236000 1 2095 1 chr3A.!!$F4 2094
2 TraesCS3A01G500300 chr3A 725234246 725235121 875 False 843.000000 843 84.169000 1457 2326 1 chr3A.!!$F2 869
3 TraesCS3A01G500300 chr3A 724828804 724829786 982 True 279.500000 368 85.200000 2382 2949 2 chr3A.!!$R2 567
4 TraesCS3A01G500300 chr3A 725425813 725426418 605 False 220.000000 220 73.718000 567 1183 1 chr3A.!!$F3 616
5 TraesCS3A01G500300 chr3D 593768420 593770396 1976 True 923.266667 1823 93.088667 565 2864 3 chr3D.!!$R3 2299
6 TraesCS3A01G500300 chr3D 593909754 593910626 872 True 795.000000 795 83.276000 1458 2326 1 chr3D.!!$R2 868
7 TraesCS3A01G500300 chr3D 594510194 594511652 1458 False 771.500000 874 85.755500 565 2298 2 chr3D.!!$F2 1733
8 TraesCS3A01G500300 chr3D 594239977 594240967 990 False 318.500000 446 86.453000 2382 2949 2 chr3D.!!$F1 567
9 TraesCS3A01G500300 chr3D 594072811 594073795 984 True 282.500000 374 84.927000 2382 2949 2 chr3D.!!$R4 567
10 TraesCS3A01G500300 chrUn 288264413 288266768 2355 True 925.666667 1345 90.700000 567 2901 3 chrUn.!!$R1 2334
11 TraesCS3A01G500300 chrUn 41881081 41883429 2348 False 918.333333 1306 90.602000 567 2901 3 chrUn.!!$F1 2334
12 TraesCS3A01G500300 chr1D 66271779 66272345 566 True 918.000000 918 95.944000 1 565 1 chr1D.!!$R1 564
13 TraesCS3A01G500300 chr3B 798157879 798158698 819 False 821.000000 821 84.970000 1458 2269 1 chr3B.!!$F1 811
14 TraesCS3A01G500300 chr3B 798200076 798201550 1474 False 720.500000 861 84.213000 567 2327 2 chr3B.!!$F3 1760
15 TraesCS3A01G500300 chr3B 797461845 797462840 995 False 309.000000 433 85.732000 2382 2958 2 chr3B.!!$F2 576
16 TraesCS3A01G500300 chr4A 598267149 598267712 563 True 821.000000 821 92.945000 1 564 1 chr4A.!!$R3 563
17 TraesCS3A01G500300 chr4A 698424311 698424830 519 False 769.000000 769 93.295000 43 564 1 chr4A.!!$F3 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1193 1202 0.89553 CCCTCGAAGACTAGCCACAA 59.104 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3018 3768 0.108945 CCCCCGTTTCTAGTGACGTC 60.109 60.0 9.11 9.11 37.56 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1193 1202 0.895530 CCCTCGAAGACTAGCCACAA 59.104 55.000 0.00 0.00 0.00 3.33
1413 1422 8.845413 AGGTACTAACATAGTCTAGGAATACG 57.155 38.462 0.00 0.00 40.14 3.06
2037 2046 2.348591 GCAAGTAGCTTGTTGTGTCGAC 60.349 50.000 9.11 9.11 42.77 4.20
2117 2126 6.548993 TGCATGCCACCTTAAAATGATATACA 59.451 34.615 16.68 0.00 0.00 2.29
2141 2150 5.270893 TCCTGTTATACATAGCGCTTGAA 57.729 39.130 18.68 0.00 0.00 2.69
2180 2194 2.434702 GCTTACCTACCTGGCTATGTGT 59.565 50.000 0.00 0.00 40.22 3.72
2378 2403 0.825840 GCAGAGTCGAGGGAGCCTAT 60.826 60.000 0.00 0.00 31.76 2.57
2480 2788 2.557924 CAGTTTGGCTATTGCAAGGACA 59.442 45.455 4.94 5.93 41.91 4.02
2481 2789 3.005684 CAGTTTGGCTATTGCAAGGACAA 59.994 43.478 16.39 16.39 41.91 3.18
2528 2837 5.855740 AAAAATCTGGTTTTGGTCGGTTA 57.144 34.783 0.00 0.00 39.86 2.85
2537 2846 0.180642 TTGGTCGGTTAACTGCCACA 59.819 50.000 22.45 13.17 31.43 4.17
2559 3294 5.473504 ACAGGAAACTCTTGCATACGAAATT 59.526 36.000 0.00 0.00 40.21 1.82
2577 3313 6.488006 ACGAAATTATGCAAGAGGAATATGCT 59.512 34.615 0.00 0.00 40.66 3.79
2578 3314 7.020010 CGAAATTATGCAAGAGGAATATGCTC 58.980 38.462 0.00 0.00 40.66 4.26
2716 3463 1.947456 TGCTAGCGTCATGTCGTATCT 59.053 47.619 10.77 5.40 0.00 1.98
2745 3492 3.007398 ACATGGAGAGAGGTCAACTTGTC 59.993 47.826 0.00 0.00 0.00 3.18
2769 3519 8.655651 TCGCAGACATGATAGTAGATCTATAG 57.344 38.462 5.57 0.00 39.22 1.31
2772 3522 7.502226 GCAGACATGATAGTAGATCTATAGCCT 59.498 40.741 5.57 0.81 39.22 4.58
2773 3523 9.407380 CAGACATGATAGTAGATCTATAGCCTT 57.593 37.037 5.57 0.00 39.22 4.35
2778 3528 9.760926 ATGATAGTAGATCTATAGCCTTGTTCA 57.239 33.333 5.57 3.88 39.22 3.18
2890 3640 1.947456 GCGTGAAGAAAGAACCTGGTT 59.053 47.619 12.82 12.82 0.00 3.67
2895 3645 6.734871 GCGTGAAGAAAGAACCTGGTTTAATT 60.735 38.462 14.28 9.09 0.00 1.40
2927 3677 5.416271 TGAACTAAGGTCTATGGTTCACC 57.584 43.478 0.00 0.00 40.47 4.02
2930 3680 4.031611 ACTAAGGTCTATGGTTCACCCTC 58.968 47.826 0.00 0.00 34.29 4.30
2949 3699 1.588674 CTTGTTGCCGGTGACAAGTA 58.411 50.000 28.89 11.02 44.73 2.24
2951 3701 0.466543 TGTTGCCGGTGACAAGTACT 59.533 50.000 1.90 0.00 0.00 2.73
2952 3702 1.145803 GTTGCCGGTGACAAGTACTC 58.854 55.000 1.90 0.00 0.00 2.59
2953 3703 0.034337 TTGCCGGTGACAAGTACTCC 59.966 55.000 1.90 0.00 0.00 3.85
2955 3705 1.823169 GCCGGTGACAAGTACTCCCA 61.823 60.000 1.90 0.00 0.00 4.37
2956 3706 0.902531 CCGGTGACAAGTACTCCCAT 59.097 55.000 0.00 0.00 0.00 4.00
2957 3707 1.134788 CCGGTGACAAGTACTCCCATC 60.135 57.143 0.00 0.00 0.00 3.51
2958 3708 1.548719 CGGTGACAAGTACTCCCATCA 59.451 52.381 0.00 0.00 0.00 3.07
2959 3709 2.417379 CGGTGACAAGTACTCCCATCAG 60.417 54.545 0.00 0.00 0.00 2.90
2960 3710 2.622436 GTGACAAGTACTCCCATCAGC 58.378 52.381 0.00 0.00 0.00 4.26
2961 3711 2.234908 GTGACAAGTACTCCCATCAGCT 59.765 50.000 0.00 0.00 0.00 4.24
2962 3712 2.906389 TGACAAGTACTCCCATCAGCTT 59.094 45.455 0.00 0.00 0.00 3.74
2963 3713 3.055819 TGACAAGTACTCCCATCAGCTTC 60.056 47.826 0.00 0.00 0.00 3.86
2964 3714 3.177228 ACAAGTACTCCCATCAGCTTCT 58.823 45.455 0.00 0.00 0.00 2.85
2965 3715 4.353777 ACAAGTACTCCCATCAGCTTCTA 58.646 43.478 0.00 0.00 0.00 2.10
2966 3716 4.777896 ACAAGTACTCCCATCAGCTTCTAA 59.222 41.667 0.00 0.00 0.00 2.10
2967 3717 5.105146 ACAAGTACTCCCATCAGCTTCTAAG 60.105 44.000 0.00 0.00 0.00 2.18
2968 3718 4.873010 AGTACTCCCATCAGCTTCTAAGA 58.127 43.478 0.00 0.00 0.00 2.10
2969 3719 5.463154 AGTACTCCCATCAGCTTCTAAGAT 58.537 41.667 0.00 0.00 0.00 2.40
2970 3720 5.902431 AGTACTCCCATCAGCTTCTAAGATT 59.098 40.000 0.00 0.00 0.00 2.40
2971 3721 5.033589 ACTCCCATCAGCTTCTAAGATTG 57.966 43.478 0.00 0.00 0.00 2.67
2972 3722 3.813443 TCCCATCAGCTTCTAAGATTGC 58.187 45.455 0.00 0.00 0.00 3.56
2973 3723 3.457380 TCCCATCAGCTTCTAAGATTGCT 59.543 43.478 0.00 0.00 36.04 3.91
2974 3724 4.655649 TCCCATCAGCTTCTAAGATTGCTA 59.344 41.667 0.00 0.00 34.10 3.49
2975 3725 5.130975 TCCCATCAGCTTCTAAGATTGCTAA 59.869 40.000 0.00 0.00 34.10 3.09
2976 3726 5.824624 CCCATCAGCTTCTAAGATTGCTAAA 59.175 40.000 0.00 0.00 34.10 1.85
2977 3727 6.489361 CCCATCAGCTTCTAAGATTGCTAAAT 59.511 38.462 0.00 0.00 34.10 1.40
2978 3728 7.361127 CCATCAGCTTCTAAGATTGCTAAATG 58.639 38.462 0.00 0.00 34.10 2.32
2979 3729 6.932356 TCAGCTTCTAAGATTGCTAAATGG 57.068 37.500 0.00 0.00 34.10 3.16
2980 3730 5.824624 TCAGCTTCTAAGATTGCTAAATGGG 59.175 40.000 0.00 0.00 34.10 4.00
2981 3731 5.824624 CAGCTTCTAAGATTGCTAAATGGGA 59.175 40.000 0.00 0.00 34.10 4.37
2982 3732 6.489361 CAGCTTCTAAGATTGCTAAATGGGAT 59.511 38.462 0.00 0.00 34.10 3.85
2983 3733 6.714356 AGCTTCTAAGATTGCTAAATGGGATC 59.286 38.462 0.00 0.00 33.64 3.36
2984 3734 6.488006 GCTTCTAAGATTGCTAAATGGGATCA 59.512 38.462 0.00 0.00 0.00 2.92
2985 3735 7.013655 GCTTCTAAGATTGCTAAATGGGATCAA 59.986 37.037 0.00 0.00 0.00 2.57
2986 3736 7.807977 TCTAAGATTGCTAAATGGGATCAAC 57.192 36.000 0.00 0.00 0.00 3.18
2987 3737 7.345691 TCTAAGATTGCTAAATGGGATCAACA 58.654 34.615 0.00 0.00 0.00 3.33
2988 3738 6.855763 AAGATTGCTAAATGGGATCAACAA 57.144 33.333 0.00 0.00 0.00 2.83
2989 3739 6.855763 AGATTGCTAAATGGGATCAACAAA 57.144 33.333 0.00 0.00 0.00 2.83
2990 3740 7.427989 AGATTGCTAAATGGGATCAACAAAT 57.572 32.000 0.00 0.00 0.00 2.32
2991 3741 8.537728 AGATTGCTAAATGGGATCAACAAATA 57.462 30.769 0.00 0.00 0.00 1.40
2992 3742 8.416329 AGATTGCTAAATGGGATCAACAAATAC 58.584 33.333 0.00 0.00 0.00 1.89
2993 3743 7.716799 TTGCTAAATGGGATCAACAAATACT 57.283 32.000 0.00 0.00 0.00 2.12
2994 3744 7.099266 TGCTAAATGGGATCAACAAATACTG 57.901 36.000 0.00 0.00 0.00 2.74
2995 3745 6.889177 TGCTAAATGGGATCAACAAATACTGA 59.111 34.615 0.00 0.00 0.00 3.41
2996 3746 7.560991 TGCTAAATGGGATCAACAAATACTGAT 59.439 33.333 0.00 0.00 34.96 2.90
2997 3747 9.066892 GCTAAATGGGATCAACAAATACTGATA 57.933 33.333 0.00 0.00 32.40 2.15
3000 3750 9.479549 AAATGGGATCAACAAATACTGATACTT 57.520 29.630 0.00 0.00 33.94 2.24
3001 3751 8.682936 ATGGGATCAACAAATACTGATACTTC 57.317 34.615 0.00 0.00 33.94 3.01
3002 3752 7.054124 TGGGATCAACAAATACTGATACTTCC 58.946 38.462 0.00 0.00 33.94 3.46
3003 3753 7.054124 GGGATCAACAAATACTGATACTTCCA 58.946 38.462 0.00 0.00 33.94 3.53
3004 3754 7.227512 GGGATCAACAAATACTGATACTTCCAG 59.772 40.741 0.00 0.00 33.94 3.86
3005 3755 6.985188 TCAACAAATACTGATACTTCCAGC 57.015 37.500 0.00 0.00 35.14 4.85
3006 3756 6.472016 TCAACAAATACTGATACTTCCAGCA 58.528 36.000 0.00 0.00 35.14 4.41
3007 3757 6.371548 TCAACAAATACTGATACTTCCAGCAC 59.628 38.462 0.00 0.00 35.14 4.40
3008 3758 5.804639 ACAAATACTGATACTTCCAGCACA 58.195 37.500 0.00 0.00 35.14 4.57
3009 3759 6.237901 ACAAATACTGATACTTCCAGCACAA 58.762 36.000 0.00 0.00 35.14 3.33
3010 3760 6.714810 ACAAATACTGATACTTCCAGCACAAA 59.285 34.615 0.00 0.00 35.14 2.83
3011 3761 6.992063 AATACTGATACTTCCAGCACAAAG 57.008 37.500 0.00 0.00 35.14 2.77
3012 3762 4.357918 ACTGATACTTCCAGCACAAAGT 57.642 40.909 0.00 3.59 39.07 2.66
3013 3763 4.718961 ACTGATACTTCCAGCACAAAGTT 58.281 39.130 3.43 0.00 37.02 2.66
3014 3764 5.865085 ACTGATACTTCCAGCACAAAGTTA 58.135 37.500 3.43 0.00 37.02 2.24
3015 3765 5.934625 ACTGATACTTCCAGCACAAAGTTAG 59.065 40.000 3.43 3.82 37.02 2.34
3016 3766 6.109156 TGATACTTCCAGCACAAAGTTAGA 57.891 37.500 3.43 0.00 37.02 2.10
3017 3767 6.711277 TGATACTTCCAGCACAAAGTTAGAT 58.289 36.000 3.43 0.00 37.02 1.98
3018 3768 6.595326 TGATACTTCCAGCACAAAGTTAGATG 59.405 38.462 3.43 0.00 37.02 2.90
3019 3769 4.973168 ACTTCCAGCACAAAGTTAGATGA 58.027 39.130 0.00 0.00 31.81 2.92
3020 3770 4.757149 ACTTCCAGCACAAAGTTAGATGAC 59.243 41.667 0.00 0.00 31.81 3.06
3021 3771 3.325870 TCCAGCACAAAGTTAGATGACG 58.674 45.455 0.00 0.00 0.00 4.35
3022 3772 3.067106 CCAGCACAAAGTTAGATGACGT 58.933 45.455 0.00 0.00 0.00 4.34
3023 3773 3.123621 CCAGCACAAAGTTAGATGACGTC 59.876 47.826 9.11 9.11 0.00 4.34
3024 3774 3.740832 CAGCACAAAGTTAGATGACGTCA 59.259 43.478 22.48 22.48 0.00 4.35
3025 3775 3.741344 AGCACAAAGTTAGATGACGTCAC 59.259 43.478 22.71 14.69 0.00 3.67
3026 3776 3.741344 GCACAAAGTTAGATGACGTCACT 59.259 43.478 22.71 20.75 0.00 3.41
3027 3777 4.921515 GCACAAAGTTAGATGACGTCACTA 59.078 41.667 22.71 19.75 0.00 2.74
3028 3778 5.061064 GCACAAAGTTAGATGACGTCACTAG 59.939 44.000 22.71 13.16 0.00 2.57
3029 3779 6.379386 CACAAAGTTAGATGACGTCACTAGA 58.621 40.000 22.71 4.85 0.00 2.43
3030 3780 6.861572 CACAAAGTTAGATGACGTCACTAGAA 59.138 38.462 22.71 10.01 0.00 2.10
3031 3781 7.381408 CACAAAGTTAGATGACGTCACTAGAAA 59.619 37.037 22.71 8.37 0.00 2.52
3032 3782 7.381678 ACAAAGTTAGATGACGTCACTAGAAAC 59.618 37.037 22.71 18.91 0.00 2.78
3033 3783 5.629097 AGTTAGATGACGTCACTAGAAACG 58.371 41.667 22.71 16.37 44.22 3.60
3034 3784 3.489180 AGATGACGTCACTAGAAACGG 57.511 47.619 22.71 7.60 42.99 4.44
3035 3785 2.163815 AGATGACGTCACTAGAAACGGG 59.836 50.000 22.71 1.45 42.99 5.28
3036 3786 0.599558 TGACGTCACTAGAAACGGGG 59.400 55.000 15.76 0.90 42.99 5.73
3037 3787 0.108945 GACGTCACTAGAAACGGGGG 60.109 60.000 11.55 0.63 42.99 5.40
3038 3788 0.540365 ACGTCACTAGAAACGGGGGA 60.540 55.000 20.13 0.00 42.99 4.81
3039 3789 0.604578 CGTCACTAGAAACGGGGGAA 59.395 55.000 11.97 0.00 35.32 3.97
3040 3790 1.403780 CGTCACTAGAAACGGGGGAAG 60.404 57.143 11.97 0.00 35.32 3.46
3041 3791 1.622312 GTCACTAGAAACGGGGGAAGT 59.378 52.381 0.00 0.00 0.00 3.01
3042 3792 2.038164 GTCACTAGAAACGGGGGAAGTT 59.962 50.000 0.00 0.00 0.00 2.66
3043 3793 2.038033 TCACTAGAAACGGGGGAAGTTG 59.962 50.000 0.00 0.00 31.43 3.16
3044 3794 1.350019 ACTAGAAACGGGGGAAGTTGG 59.650 52.381 0.00 0.00 31.43 3.77
3045 3795 1.626825 CTAGAAACGGGGGAAGTTGGA 59.373 52.381 0.00 0.00 31.43 3.53
3046 3796 1.073098 AGAAACGGGGGAAGTTGGAT 58.927 50.000 0.00 0.00 31.43 3.41
3047 3797 1.173913 GAAACGGGGGAAGTTGGATG 58.826 55.000 0.00 0.00 31.43 3.51
3048 3798 0.774908 AAACGGGGGAAGTTGGATGA 59.225 50.000 0.00 0.00 31.43 2.92
3049 3799 0.774908 AACGGGGGAAGTTGGATGAA 59.225 50.000 0.00 0.00 0.00 2.57
3050 3800 0.999712 ACGGGGGAAGTTGGATGAAT 59.000 50.000 0.00 0.00 0.00 2.57
3051 3801 1.357761 ACGGGGGAAGTTGGATGAATT 59.642 47.619 0.00 0.00 0.00 2.17
3052 3802 1.750778 CGGGGGAAGTTGGATGAATTG 59.249 52.381 0.00 0.00 0.00 2.32
3053 3803 2.110578 GGGGGAAGTTGGATGAATTGG 58.889 52.381 0.00 0.00 0.00 3.16
3054 3804 1.482182 GGGGAAGTTGGATGAATTGGC 59.518 52.381 0.00 0.00 0.00 4.52
3055 3805 2.178580 GGGAAGTTGGATGAATTGGCA 58.821 47.619 0.00 0.00 0.00 4.92
3056 3806 2.094026 GGGAAGTTGGATGAATTGGCAC 60.094 50.000 0.00 0.00 0.00 5.01
3057 3807 2.562298 GGAAGTTGGATGAATTGGCACA 59.438 45.455 0.00 0.00 0.00 4.57
3075 3825 7.156876 TGGCACAATGAGAAATTAGGTTTAG 57.843 36.000 0.00 0.00 31.92 1.85
3076 3826 6.152661 TGGCACAATGAGAAATTAGGTTTAGG 59.847 38.462 0.00 0.00 31.92 2.69
3077 3827 6.405842 GGCACAATGAGAAATTAGGTTTAGGG 60.406 42.308 0.00 0.00 0.00 3.53
3078 3828 6.152831 GCACAATGAGAAATTAGGTTTAGGGT 59.847 38.462 0.00 0.00 0.00 4.34
3079 3829 7.309805 GCACAATGAGAAATTAGGTTTAGGGTT 60.310 37.037 0.00 0.00 0.00 4.11
3080 3830 8.585018 CACAATGAGAAATTAGGTTTAGGGTTT 58.415 33.333 0.00 0.00 0.00 3.27
3081 3831 9.816787 ACAATGAGAAATTAGGTTTAGGGTTTA 57.183 29.630 0.00 0.00 0.00 2.01
3083 3833 9.475620 AATGAGAAATTAGGTTTAGGGTTTAGG 57.524 33.333 0.00 0.00 0.00 2.69
3084 3834 8.222138 TGAGAAATTAGGTTTAGGGTTTAGGA 57.778 34.615 0.00 0.00 0.00 2.94
3085 3835 8.671409 TGAGAAATTAGGTTTAGGGTTTAGGAA 58.329 33.333 0.00 0.00 0.00 3.36
3086 3836 9.696572 GAGAAATTAGGTTTAGGGTTTAGGAAT 57.303 33.333 0.00 0.00 0.00 3.01
3090 3840 9.931698 AATTAGGTTTAGGGTTTAGGAATTAGG 57.068 33.333 0.00 0.00 0.00 2.69
3091 3841 8.698650 TTAGGTTTAGGGTTTAGGAATTAGGA 57.301 34.615 0.00 0.00 0.00 2.94
3092 3842 7.782695 AGGTTTAGGGTTTAGGAATTAGGAT 57.217 36.000 0.00 0.00 0.00 3.24
3093 3843 8.183571 AGGTTTAGGGTTTAGGAATTAGGATT 57.816 34.615 0.00 0.00 0.00 3.01
3094 3844 8.059461 AGGTTTAGGGTTTAGGAATTAGGATTG 58.941 37.037 0.00 0.00 0.00 2.67
3095 3845 8.057011 GGTTTAGGGTTTAGGAATTAGGATTGA 58.943 37.037 0.00 0.00 0.00 2.57
3096 3846 9.642343 GTTTAGGGTTTAGGAATTAGGATTGAT 57.358 33.333 0.00 0.00 0.00 2.57
3098 3848 9.862149 TTAGGGTTTAGGAATTAGGATTGATTC 57.138 33.333 0.00 0.00 0.00 2.52
3099 3849 7.882755 AGGGTTTAGGAATTAGGATTGATTCA 58.117 34.615 0.00 0.00 34.67 2.57
3100 3850 8.514504 AGGGTTTAGGAATTAGGATTGATTCAT 58.485 33.333 0.00 0.00 34.67 2.57
3101 3851 9.147732 GGGTTTAGGAATTAGGATTGATTCATT 57.852 33.333 0.00 0.00 34.67 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 9 2.563179 TCTGAGCTACCTGTTGAACTCC 59.437 50.000 0.00 0.00 0.00 3.85
1193 1202 4.286032 TGTTACTGCTGAAGTTACTCCCAT 59.714 41.667 6.50 0.00 38.87 4.00
1413 1422 8.909671 GGAGTAACATACATTAGTAACATACGC 58.090 37.037 0.00 0.00 33.13 4.42
1962 1971 4.926238 CCTAGATATTGCATCCTTGACGTC 59.074 45.833 9.11 9.11 0.00 4.34
2021 2030 2.717580 ATCGTCGACACAACAAGCTA 57.282 45.000 17.16 0.00 0.00 3.32
2037 2046 3.184541 AGGTCGGTAAATGAACGAATCG 58.815 45.455 0.00 0.00 38.46 3.34
2117 2126 5.853936 TCAAGCGCTATGTATAACAGGATT 58.146 37.500 12.05 0.00 0.00 3.01
2180 2194 0.178876 TCCATCACCAGGGAAGGACA 60.179 55.000 0.00 0.00 30.19 4.02
2378 2403 6.014755 TCCAGCAAATAATCCATTGAACACAA 60.015 34.615 0.00 0.00 0.00 3.33
2444 2751 2.734606 CAAACTGGCACAAGCATTCATG 59.265 45.455 0.00 0.00 44.61 3.07
2480 2788 2.855209 AGCACAGAATCTGCTCACTT 57.145 45.000 10.62 0.00 41.27 3.16
2481 2789 2.812591 CAAAGCACAGAATCTGCTCACT 59.187 45.455 10.62 0.00 44.45 3.41
2528 2837 2.301346 CAAGAGTTTCCTGTGGCAGTT 58.699 47.619 0.00 0.00 0.00 3.16
2537 2846 7.697691 CATAATTTCGTATGCAAGAGTTTCCT 58.302 34.615 0.00 0.00 0.00 3.36
2559 3294 5.791666 CTCAGAGCATATTCCTCTTGCATA 58.208 41.667 0.00 0.00 37.57 3.14
2577 3313 1.202915 TGCTTGATTGTTGGGCTCAGA 60.203 47.619 0.00 0.00 0.00 3.27
2578 3314 1.250328 TGCTTGATTGTTGGGCTCAG 58.750 50.000 0.00 0.00 0.00 3.35
2632 3368 3.562182 TCGGCATCAACTATAGTCTCCA 58.438 45.455 5.70 0.00 0.00 3.86
2716 3463 1.004862 ACCTCTCTCCATGTCTCGACA 59.995 52.381 1.79 1.79 46.44 4.35
2745 3492 7.351981 GCTATAGATCTACTATCATGTCTGCG 58.648 42.308 4.10 0.00 41.44 5.18
2758 3508 8.307483 TGCTAATGAACAAGGCTATAGATCTAC 58.693 37.037 4.10 0.00 0.00 2.59
2760 3510 7.308450 TGCTAATGAACAAGGCTATAGATCT 57.692 36.000 3.21 0.00 0.00 2.75
2763 3513 6.270927 AGGATGCTAATGAACAAGGCTATAGA 59.729 38.462 3.21 0.00 0.00 1.98
2769 3519 4.823989 ACATAGGATGCTAATGAACAAGGC 59.176 41.667 0.00 0.00 0.00 4.35
2772 3522 9.851686 AGATTTACATAGGATGCTAATGAACAA 57.148 29.630 0.00 0.00 0.00 2.83
2773 3523 9.494271 GAGATTTACATAGGATGCTAATGAACA 57.506 33.333 0.00 0.00 0.00 3.18
2895 3645 8.265055 CCATAGACCTTAGTTCAATCCAACTTA 58.735 37.037 0.00 0.00 37.75 2.24
2918 3668 1.620822 GCAACAAGAGGGTGAACCAT 58.379 50.000 1.16 0.00 43.89 3.55
2919 3669 0.467290 GGCAACAAGAGGGTGAACCA 60.467 55.000 1.16 0.00 43.89 3.67
2927 3677 0.817634 TTGTCACCGGCAACAAGAGG 60.818 55.000 16.05 0.00 31.97 3.69
2949 3699 4.685575 GCAATCTTAGAAGCTGATGGGAGT 60.686 45.833 0.00 0.00 0.00 3.85
2951 3701 3.457380 AGCAATCTTAGAAGCTGATGGGA 59.543 43.478 10.91 0.00 35.72 4.37
2952 3702 3.818180 AGCAATCTTAGAAGCTGATGGG 58.182 45.455 10.91 0.00 35.72 4.00
2953 3703 6.932356 TTTAGCAATCTTAGAAGCTGATGG 57.068 37.500 18.47 0.00 37.94 3.51
2955 3705 6.489361 CCCATTTAGCAATCTTAGAAGCTGAT 59.511 38.462 18.47 11.47 37.94 2.90
2956 3706 5.824624 CCCATTTAGCAATCTTAGAAGCTGA 59.175 40.000 18.47 10.46 37.94 4.26
2957 3707 5.824624 TCCCATTTAGCAATCTTAGAAGCTG 59.175 40.000 18.47 6.47 37.94 4.24
2958 3708 6.006275 TCCCATTTAGCAATCTTAGAAGCT 57.994 37.500 14.98 14.98 40.92 3.74
2959 3709 6.488006 TGATCCCATTTAGCAATCTTAGAAGC 59.512 38.462 2.44 2.44 0.00 3.86
2960 3710 8.348507 GTTGATCCCATTTAGCAATCTTAGAAG 58.651 37.037 0.00 0.00 0.00 2.85
2961 3711 7.833682 TGTTGATCCCATTTAGCAATCTTAGAA 59.166 33.333 0.00 0.00 0.00 2.10
2962 3712 7.345691 TGTTGATCCCATTTAGCAATCTTAGA 58.654 34.615 0.00 0.00 0.00 2.10
2963 3713 7.572523 TGTTGATCCCATTTAGCAATCTTAG 57.427 36.000 0.00 0.00 0.00 2.18
2964 3714 7.953005 TTGTTGATCCCATTTAGCAATCTTA 57.047 32.000 0.00 0.00 0.00 2.10
2965 3715 6.855763 TTGTTGATCCCATTTAGCAATCTT 57.144 33.333 0.00 0.00 0.00 2.40
2966 3716 6.855763 TTTGTTGATCCCATTTAGCAATCT 57.144 33.333 0.00 0.00 0.00 2.40
2967 3717 8.416329 AGTATTTGTTGATCCCATTTAGCAATC 58.584 33.333 0.00 0.00 0.00 2.67
2968 3718 8.199449 CAGTATTTGTTGATCCCATTTAGCAAT 58.801 33.333 0.00 0.00 0.00 3.56
2969 3719 7.395772 TCAGTATTTGTTGATCCCATTTAGCAA 59.604 33.333 0.00 0.00 0.00 3.91
2970 3720 6.889177 TCAGTATTTGTTGATCCCATTTAGCA 59.111 34.615 0.00 0.00 0.00 3.49
2971 3721 7.333528 TCAGTATTTGTTGATCCCATTTAGC 57.666 36.000 0.00 0.00 0.00 3.09
2974 3724 9.479549 AAGTATCAGTATTTGTTGATCCCATTT 57.520 29.630 0.00 0.00 0.00 2.32
2975 3725 9.125026 GAAGTATCAGTATTTGTTGATCCCATT 57.875 33.333 0.00 0.00 0.00 3.16
2976 3726 7.721399 GGAAGTATCAGTATTTGTTGATCCCAT 59.279 37.037 0.00 0.00 0.00 4.00
2977 3727 7.054124 GGAAGTATCAGTATTTGTTGATCCCA 58.946 38.462 0.00 0.00 0.00 4.37
2978 3728 7.054124 TGGAAGTATCAGTATTTGTTGATCCC 58.946 38.462 0.00 0.00 0.00 3.85
2979 3729 7.254932 GCTGGAAGTATCAGTATTTGTTGATCC 60.255 40.741 0.00 0.00 35.30 3.36
2980 3730 7.280876 TGCTGGAAGTATCAGTATTTGTTGATC 59.719 37.037 0.00 0.00 35.30 2.92
2981 3731 7.066284 GTGCTGGAAGTATCAGTATTTGTTGAT 59.934 37.037 0.00 0.00 35.30 2.57
2982 3732 6.371548 GTGCTGGAAGTATCAGTATTTGTTGA 59.628 38.462 0.00 0.00 35.30 3.18
2983 3733 6.149308 TGTGCTGGAAGTATCAGTATTTGTTG 59.851 38.462 0.00 0.00 35.30 3.33
2984 3734 6.237901 TGTGCTGGAAGTATCAGTATTTGTT 58.762 36.000 0.00 0.00 35.30 2.83
2985 3735 5.804639 TGTGCTGGAAGTATCAGTATTTGT 58.195 37.500 0.00 0.00 35.30 2.83
2986 3736 6.741992 TTGTGCTGGAAGTATCAGTATTTG 57.258 37.500 0.00 0.00 35.30 2.32
2987 3737 6.942576 ACTTTGTGCTGGAAGTATCAGTATTT 59.057 34.615 0.00 0.00 34.52 1.40
2988 3738 6.476378 ACTTTGTGCTGGAAGTATCAGTATT 58.524 36.000 0.00 0.00 34.52 1.89
2989 3739 6.054860 ACTTTGTGCTGGAAGTATCAGTAT 57.945 37.500 0.00 0.00 34.52 2.12
2990 3740 5.483685 ACTTTGTGCTGGAAGTATCAGTA 57.516 39.130 0.00 0.00 34.52 2.74
2991 3741 4.357918 ACTTTGTGCTGGAAGTATCAGT 57.642 40.909 0.00 0.00 34.52 3.41
2992 3742 6.166279 TCTAACTTTGTGCTGGAAGTATCAG 58.834 40.000 0.78 0.00 35.17 2.90
2993 3743 6.109156 TCTAACTTTGTGCTGGAAGTATCA 57.891 37.500 0.78 0.00 35.17 2.15
2994 3744 6.818644 TCATCTAACTTTGTGCTGGAAGTATC 59.181 38.462 0.78 0.00 35.17 2.24
2995 3745 6.595716 GTCATCTAACTTTGTGCTGGAAGTAT 59.404 38.462 0.78 0.00 35.17 2.12
2996 3746 5.932303 GTCATCTAACTTTGTGCTGGAAGTA 59.068 40.000 0.78 0.00 35.17 2.24
2997 3747 4.757149 GTCATCTAACTTTGTGCTGGAAGT 59.243 41.667 0.00 0.00 37.69 3.01
2998 3748 4.143030 CGTCATCTAACTTTGTGCTGGAAG 60.143 45.833 0.00 0.00 0.00 3.46
2999 3749 3.745975 CGTCATCTAACTTTGTGCTGGAA 59.254 43.478 0.00 0.00 0.00 3.53
3000 3750 3.244078 ACGTCATCTAACTTTGTGCTGGA 60.244 43.478 0.00 0.00 0.00 3.86
3001 3751 3.067106 ACGTCATCTAACTTTGTGCTGG 58.933 45.455 0.00 0.00 0.00 4.85
3002 3752 3.740832 TGACGTCATCTAACTTTGTGCTG 59.259 43.478 15.76 0.00 0.00 4.41
3003 3753 3.741344 GTGACGTCATCTAACTTTGTGCT 59.259 43.478 23.12 0.00 0.00 4.40
3004 3754 3.741344 AGTGACGTCATCTAACTTTGTGC 59.259 43.478 23.12 3.60 0.00 4.57
3005 3755 6.379386 TCTAGTGACGTCATCTAACTTTGTG 58.621 40.000 23.12 10.57 0.00 3.33
3006 3756 6.570672 TCTAGTGACGTCATCTAACTTTGT 57.429 37.500 23.12 0.32 0.00 2.83
3007 3757 7.409449 CGTTTCTAGTGACGTCATCTAACTTTG 60.409 40.741 23.12 11.76 34.75 2.77
3008 3758 6.581542 CGTTTCTAGTGACGTCATCTAACTTT 59.418 38.462 23.12 3.19 34.75 2.66
3009 3759 6.084925 CGTTTCTAGTGACGTCATCTAACTT 58.915 40.000 23.12 4.54 34.75 2.66
3010 3760 5.391736 CCGTTTCTAGTGACGTCATCTAACT 60.392 44.000 23.12 15.66 37.56 2.24
3011 3761 4.792189 CCGTTTCTAGTGACGTCATCTAAC 59.208 45.833 23.12 18.30 37.56 2.34
3012 3762 4.142534 CCCGTTTCTAGTGACGTCATCTAA 60.143 45.833 23.12 11.07 37.56 2.10
3013 3763 3.376234 CCCGTTTCTAGTGACGTCATCTA 59.624 47.826 23.12 20.94 37.56 1.98
3014 3764 2.163815 CCCGTTTCTAGTGACGTCATCT 59.836 50.000 23.12 20.94 37.56 2.90
3015 3765 2.527100 CCCGTTTCTAGTGACGTCATC 58.473 52.381 23.12 15.04 37.56 2.92
3016 3766 1.203994 CCCCGTTTCTAGTGACGTCAT 59.796 52.381 23.12 13.03 37.56 3.06
3017 3767 0.599558 CCCCGTTTCTAGTGACGTCA 59.400 55.000 15.76 15.76 37.56 4.35
3018 3768 0.108945 CCCCCGTTTCTAGTGACGTC 60.109 60.000 9.11 9.11 37.56 4.34
3019 3769 0.540365 TCCCCCGTTTCTAGTGACGT 60.540 55.000 15.65 0.00 37.56 4.34
3020 3770 0.604578 TTCCCCCGTTTCTAGTGACG 59.395 55.000 11.80 11.80 38.90 4.35
3021 3771 1.622312 ACTTCCCCCGTTTCTAGTGAC 59.378 52.381 0.00 0.00 0.00 3.67
3022 3772 2.019807 ACTTCCCCCGTTTCTAGTGA 57.980 50.000 0.00 0.00 0.00 3.41
3023 3773 2.423577 CAACTTCCCCCGTTTCTAGTG 58.576 52.381 0.00 0.00 0.00 2.74
3024 3774 1.350019 CCAACTTCCCCCGTTTCTAGT 59.650 52.381 0.00 0.00 0.00 2.57
3025 3775 1.626825 TCCAACTTCCCCCGTTTCTAG 59.373 52.381 0.00 0.00 0.00 2.43
3026 3776 1.732117 TCCAACTTCCCCCGTTTCTA 58.268 50.000 0.00 0.00 0.00 2.10
3027 3777 1.073098 ATCCAACTTCCCCCGTTTCT 58.927 50.000 0.00 0.00 0.00 2.52
3028 3778 1.173913 CATCCAACTTCCCCCGTTTC 58.826 55.000 0.00 0.00 0.00 2.78
3029 3779 0.774908 TCATCCAACTTCCCCCGTTT 59.225 50.000 0.00 0.00 0.00 3.60
3030 3780 0.774908 TTCATCCAACTTCCCCCGTT 59.225 50.000 0.00 0.00 0.00 4.44
3031 3781 0.999712 ATTCATCCAACTTCCCCCGT 59.000 50.000 0.00 0.00 0.00 5.28
3032 3782 1.750778 CAATTCATCCAACTTCCCCCG 59.249 52.381 0.00 0.00 0.00 5.73
3033 3783 2.110578 CCAATTCATCCAACTTCCCCC 58.889 52.381 0.00 0.00 0.00 5.40
3034 3784 1.482182 GCCAATTCATCCAACTTCCCC 59.518 52.381 0.00 0.00 0.00 4.81
3035 3785 2.094026 GTGCCAATTCATCCAACTTCCC 60.094 50.000 0.00 0.00 0.00 3.97
3036 3786 2.562298 TGTGCCAATTCATCCAACTTCC 59.438 45.455 0.00 0.00 0.00 3.46
3037 3787 3.940209 TGTGCCAATTCATCCAACTTC 57.060 42.857 0.00 0.00 0.00 3.01
3038 3788 4.283978 TCATTGTGCCAATTCATCCAACTT 59.716 37.500 0.00 0.00 0.00 2.66
3039 3789 3.833650 TCATTGTGCCAATTCATCCAACT 59.166 39.130 0.00 0.00 0.00 3.16
3040 3790 4.082081 TCTCATTGTGCCAATTCATCCAAC 60.082 41.667 0.00 0.00 0.00 3.77
3041 3791 4.087907 TCTCATTGTGCCAATTCATCCAA 58.912 39.130 0.00 0.00 0.00 3.53
3042 3792 3.699413 TCTCATTGTGCCAATTCATCCA 58.301 40.909 0.00 0.00 0.00 3.41
3043 3793 4.724074 TTCTCATTGTGCCAATTCATCC 57.276 40.909 0.00 0.00 0.00 3.51
3044 3794 7.437267 CCTAATTTCTCATTGTGCCAATTCATC 59.563 37.037 0.00 0.00 0.00 2.92
3045 3795 7.093201 ACCTAATTTCTCATTGTGCCAATTCAT 60.093 33.333 0.00 0.00 0.00 2.57
3046 3796 6.211184 ACCTAATTTCTCATTGTGCCAATTCA 59.789 34.615 0.00 0.00 0.00 2.57
3047 3797 6.633856 ACCTAATTTCTCATTGTGCCAATTC 58.366 36.000 0.00 0.00 0.00 2.17
3048 3798 6.610075 ACCTAATTTCTCATTGTGCCAATT 57.390 33.333 0.00 0.00 0.00 2.32
3049 3799 6.610075 AACCTAATTTCTCATTGTGCCAAT 57.390 33.333 0.00 0.00 0.00 3.16
3050 3800 6.418057 AAACCTAATTTCTCATTGTGCCAA 57.582 33.333 0.00 0.00 0.00 4.52
3051 3801 6.152661 CCTAAACCTAATTTCTCATTGTGCCA 59.847 38.462 0.00 0.00 0.00 4.92
3052 3802 6.405842 CCCTAAACCTAATTTCTCATTGTGCC 60.406 42.308 0.00 0.00 0.00 5.01
3053 3803 6.152831 ACCCTAAACCTAATTTCTCATTGTGC 59.847 38.462 0.00 0.00 0.00 4.57
3054 3804 7.703058 ACCCTAAACCTAATTTCTCATTGTG 57.297 36.000 0.00 0.00 0.00 3.33
3055 3805 8.721133 AAACCCTAAACCTAATTTCTCATTGT 57.279 30.769 0.00 0.00 0.00 2.71
3057 3807 9.475620 CCTAAACCCTAAACCTAATTTCTCATT 57.524 33.333 0.00 0.00 0.00 2.57
3058 3808 8.842764 TCCTAAACCCTAAACCTAATTTCTCAT 58.157 33.333 0.00 0.00 0.00 2.90
3059 3809 8.222138 TCCTAAACCCTAAACCTAATTTCTCA 57.778 34.615 0.00 0.00 0.00 3.27
3060 3810 9.696572 ATTCCTAAACCCTAAACCTAATTTCTC 57.303 33.333 0.00 0.00 0.00 2.87
3064 3814 9.931698 CCTAATTCCTAAACCCTAAACCTAATT 57.068 33.333 0.00 0.00 0.00 1.40
3065 3815 9.300187 TCCTAATTCCTAAACCCTAAACCTAAT 57.700 33.333 0.00 0.00 0.00 1.73
3066 3816 8.698650 TCCTAATTCCTAAACCCTAAACCTAA 57.301 34.615 0.00 0.00 0.00 2.69
3067 3817 8.881109 ATCCTAATTCCTAAACCCTAAACCTA 57.119 34.615 0.00 0.00 0.00 3.08
3068 3818 7.782695 ATCCTAATTCCTAAACCCTAAACCT 57.217 36.000 0.00 0.00 0.00 3.50
3069 3819 8.057011 TCAATCCTAATTCCTAAACCCTAAACC 58.943 37.037 0.00 0.00 0.00 3.27
3070 3820 9.642343 ATCAATCCTAATTCCTAAACCCTAAAC 57.358 33.333 0.00 0.00 0.00 2.01
3072 3822 9.862149 GAATCAATCCTAATTCCTAAACCCTAA 57.138 33.333 0.00 0.00 0.00 2.69
3073 3823 9.009675 TGAATCAATCCTAATTCCTAAACCCTA 57.990 33.333 0.00 0.00 32.11 3.53
3074 3824 7.882755 TGAATCAATCCTAATTCCTAAACCCT 58.117 34.615 0.00 0.00 32.11 4.34
3075 3825 8.712228 ATGAATCAATCCTAATTCCTAAACCC 57.288 34.615 0.00 0.00 32.11 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.