Multiple sequence alignment - TraesCS3A01G498900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G498900 chr3A 100.000 3344 0 0 1 3344 724304362 724307705 0.000000e+00 6176
1 TraesCS3A01G498900 chr3A 84.157 1559 166 43 891 2422 724519290 724520794 0.000000e+00 1435
2 TraesCS3A01G498900 chr3A 85.714 980 105 14 987 1947 724525338 724524375 0.000000e+00 1002
3 TraesCS3A01G498900 chr3A 100.000 125 0 0 2884 3008 724307183 724307307 7.220000e-57 231
4 TraesCS3A01G498900 chr3A 100.000 125 0 0 2822 2946 724307245 724307369 7.220000e-57 231
5 TraesCS3A01G498900 chr3A 100.000 63 0 0 2946 3008 724307183 724307245 2.110000e-22 117
6 TraesCS3A01G498900 chr3D 92.115 1801 115 19 799 2583 593078123 593079912 0.000000e+00 2514
7 TraesCS3A01G498900 chr3D 85.597 1458 160 28 987 2422 593244429 593245858 0.000000e+00 1483
8 TraesCS3A01G498900 chr3D 85.729 953 98 17 1016 1947 593261480 593260545 0.000000e+00 972
9 TraesCS3A01G498900 chr3D 87.565 193 21 3 459 650 54369182 54368992 1.560000e-53 220
10 TraesCS3A01G498900 chr3D 87.857 140 10 5 3198 3336 593080652 593080785 1.240000e-34 158
11 TraesCS3A01G498900 chr3B 90.166 1810 114 11 622 2422 795280237 795281991 0.000000e+00 2298
12 TraesCS3A01G498900 chr3B 86.896 1366 146 11 1080 2422 795913834 795915189 0.000000e+00 1500
13 TraesCS3A01G498900 chr3B 86.441 885 91 8 1085 1947 795920070 795919193 0.000000e+00 942
14 TraesCS3A01G498900 chr3B 88.409 509 47 6 99 604 795278664 795279163 1.330000e-168 603
15 TraesCS3A01G498900 chr3B 87.857 140 9 3 3198 3336 795285086 795285218 1.240000e-34 158
16 TraesCS3A01G498900 chr4D 87.793 213 24 2 441 652 461492288 461492077 7.160000e-62 248
17 TraesCS3A01G498900 chr4D 85.581 215 28 3 438 651 417622897 417623109 4.340000e-54 222
18 TraesCS3A01G498900 chr4D 86.139 202 20 7 443 639 435664447 435664249 9.400000e-51 211
19 TraesCS3A01G498900 chr4D 83.237 173 27 1 2713 2883 496870253 496870081 1.240000e-34 158
20 TraesCS3A01G498900 chr7D 87.143 210 25 2 443 651 614375904 614376112 1.550000e-58 237
21 TraesCS3A01G498900 chr2D 87.081 209 25 2 443 650 589493914 589494121 5.580000e-58 235
22 TraesCS3A01G498900 chr5D 86.957 207 25 2 446 651 525668102 525667897 7.220000e-57 231
23 TraesCS3A01G498900 chr6D 86.070 201 26 2 443 642 124958933 124958734 7.270000e-52 215
24 TraesCS3A01G498900 chr4B 79.851 268 45 5 2625 2884 107666216 107665950 1.580000e-43 187
25 TraesCS3A01G498900 chr4B 79.412 204 36 5 2685 2884 119336399 119336198 4.500000e-29 139
26 TraesCS3A01G498900 chr6A 81.281 203 25 9 3137 3333 597361325 597361520 5.780000e-33 152
27 TraesCS3A01G498900 chr4A 80.000 205 33 7 2685 2884 578768125 578767924 9.670000e-31 145
28 TraesCS3A01G498900 chr7B 79.310 203 38 3 2685 2884 637945613 637945412 4.500000e-29 139
29 TraesCS3A01G498900 chr6B 79.412 204 36 5 2685 2884 513140765 513140564 4.500000e-29 139
30 TraesCS3A01G498900 chr5B 82.432 148 18 7 3152 3294 690978245 690978389 4.530000e-24 122
31 TraesCS3A01G498900 chr1B 85.345 116 15 1 2771 2884 540998830 540998715 5.860000e-23 119
32 TraesCS3A01G498900 chr2B 79.310 174 30 5 2682 2851 679891549 679891720 2.110000e-22 117
33 TraesCS3A01G498900 chr1A 84.685 111 16 1 2948 3057 369525272 369525382 3.530000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G498900 chr3A 724304362 724307705 3343 False 1688.750000 6176 100.000000 1 3344 4 chr3A.!!$F2 3343
1 TraesCS3A01G498900 chr3A 724519290 724520794 1504 False 1435.000000 1435 84.157000 891 2422 1 chr3A.!!$F1 1531
2 TraesCS3A01G498900 chr3A 724524375 724525338 963 True 1002.000000 1002 85.714000 987 1947 1 chr3A.!!$R1 960
3 TraesCS3A01G498900 chr3D 593244429 593245858 1429 False 1483.000000 1483 85.597000 987 2422 1 chr3D.!!$F1 1435
4 TraesCS3A01G498900 chr3D 593078123 593080785 2662 False 1336.000000 2514 89.986000 799 3336 2 chr3D.!!$F2 2537
5 TraesCS3A01G498900 chr3D 593260545 593261480 935 True 972.000000 972 85.729000 1016 1947 1 chr3D.!!$R2 931
6 TraesCS3A01G498900 chr3B 795913834 795915189 1355 False 1500.000000 1500 86.896000 1080 2422 1 chr3B.!!$F1 1342
7 TraesCS3A01G498900 chr3B 795278664 795285218 6554 False 1019.666667 2298 88.810667 99 3336 3 chr3B.!!$F2 3237
8 TraesCS3A01G498900 chr3B 795919193 795920070 877 True 942.000000 942 86.441000 1085 1947 1 chr3B.!!$R1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.029700 CAACGAACCGGGACCAAAAC 59.970 55.0 6.32 0.0 0.0 2.43 F
1055 2152 0.381089 CTTATCGGCGTCCTTCTCGT 59.619 55.0 6.85 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 2722 1.002990 TGACTGCCCGACGAGTAGA 60.003 57.895 0.74 0.0 0.0 2.59 R
2835 5613 0.035458 CATTATCACCCCTCCCTCGC 59.965 60.000 0.00 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.552859 AAAAATAAAACCGCCTTGGAAATG 57.447 33.333 0.00 0.00 42.00 2.32
75 76 5.476091 AAATAAAACCGCCTTGGAAATGA 57.524 34.783 0.00 0.00 42.00 2.57
76 77 2.812358 AAAACCGCCTTGGAAATGAC 57.188 45.000 0.00 0.00 42.00 3.06
77 78 0.966179 AAACCGCCTTGGAAATGACC 59.034 50.000 0.00 0.00 42.00 4.02
78 79 0.178975 AACCGCCTTGGAAATGACCA 60.179 50.000 0.00 0.00 42.00 4.02
79 80 0.178975 ACCGCCTTGGAAATGACCAA 60.179 50.000 0.00 0.00 46.02 3.67
80 81 0.243636 CCGCCTTGGAAATGACCAAC 59.756 55.000 0.00 0.00 43.79 3.77
81 82 0.109781 CGCCTTGGAAATGACCAACG 60.110 55.000 0.00 0.00 43.79 4.10
82 83 1.243902 GCCTTGGAAATGACCAACGA 58.756 50.000 0.00 0.00 43.79 3.85
83 84 1.611491 GCCTTGGAAATGACCAACGAA 59.389 47.619 0.00 0.00 43.79 3.85
84 85 2.607038 GCCTTGGAAATGACCAACGAAC 60.607 50.000 0.00 0.00 43.79 3.95
85 86 2.030274 CCTTGGAAATGACCAACGAACC 60.030 50.000 0.00 0.00 43.79 3.62
86 87 1.231221 TGGAAATGACCAACGAACCG 58.769 50.000 0.00 0.00 36.96 4.44
87 88 0.519961 GGAAATGACCAACGAACCGG 59.480 55.000 0.00 0.00 0.00 5.28
88 89 0.519961 GAAATGACCAACGAACCGGG 59.480 55.000 6.32 0.00 0.00 5.73
89 90 0.108963 AAATGACCAACGAACCGGGA 59.891 50.000 6.32 0.00 0.00 5.14
90 91 0.604511 AATGACCAACGAACCGGGAC 60.605 55.000 6.32 0.00 0.00 4.46
91 92 2.357881 GACCAACGAACCGGGACC 60.358 66.667 6.32 0.00 0.00 4.46
92 93 3.162858 ACCAACGAACCGGGACCA 61.163 61.111 6.32 0.00 0.00 4.02
93 94 2.111460 CCAACGAACCGGGACCAA 59.889 61.111 6.32 0.00 0.00 3.67
94 95 1.526455 CCAACGAACCGGGACCAAA 60.526 57.895 6.32 0.00 0.00 3.28
95 96 1.102222 CCAACGAACCGGGACCAAAA 61.102 55.000 6.32 0.00 0.00 2.44
96 97 0.029700 CAACGAACCGGGACCAAAAC 59.970 55.000 6.32 0.00 0.00 2.43
97 98 1.102809 AACGAACCGGGACCAAAACC 61.103 55.000 6.32 0.00 0.00 3.27
105 106 2.628657 CCGGGACCAAAACCAACAATAA 59.371 45.455 0.00 0.00 0.00 1.40
108 109 5.116882 CGGGACCAAAACCAACAATAAAAA 58.883 37.500 0.00 0.00 0.00 1.94
133 134 9.869757 AAACAAGTTAGAAAGCAATAGTTGTTT 57.130 25.926 11.29 11.29 39.52 2.83
134 135 8.856490 ACAAGTTAGAAAGCAATAGTTGTTTG 57.144 30.769 0.00 0.00 34.21 2.93
145 146 6.982141 AGCAATAGTTGTTTGATGGCATAATG 59.018 34.615 0.00 0.00 0.00 1.90
163 164 2.264005 TGGTTACTGTCATTGGCGTT 57.736 45.000 0.00 0.00 0.00 4.84
178 179 1.464189 GGCGTTGAAGAAAGTGATCGC 60.464 52.381 0.00 0.00 41.32 4.58
190 191 2.061773 AGTGATCGCGAGTTTGAACTG 58.938 47.619 16.66 0.00 39.88 3.16
193 194 1.626654 ATCGCGAGTTTGAACTGCGG 61.627 55.000 25.35 15.18 46.44 5.69
204 205 4.704833 ACTGCGGCGGTGCATCTT 62.705 61.111 14.78 0.00 45.26 2.40
278 279 2.184167 CGGAGGTGTGGTGCGTTTT 61.184 57.895 0.00 0.00 0.00 2.43
294 295 0.818445 TTTTAGGCACCCGTTTGCGA 60.818 50.000 0.00 0.00 44.00 5.10
301 302 0.660300 CACCCGTTTGCGAAAAGAGC 60.660 55.000 0.00 0.00 41.33 4.09
309 310 5.015733 CGTTTGCGAAAAGAGCTATAACAG 58.984 41.667 0.00 0.00 41.33 3.16
310 311 5.324697 GTTTGCGAAAAGAGCTATAACAGG 58.675 41.667 0.00 0.00 35.28 4.00
311 312 2.936498 TGCGAAAAGAGCTATAACAGGC 59.064 45.455 0.00 0.00 35.28 4.85
312 313 2.936498 GCGAAAAGAGCTATAACAGGCA 59.064 45.455 0.00 0.00 0.00 4.75
313 314 3.242446 GCGAAAAGAGCTATAACAGGCAC 60.242 47.826 0.00 0.00 0.00 5.01
314 315 3.932710 CGAAAAGAGCTATAACAGGCACA 59.067 43.478 0.00 0.00 0.00 4.57
315 316 4.572389 CGAAAAGAGCTATAACAGGCACAT 59.428 41.667 0.00 0.00 0.00 3.21
316 317 5.503031 CGAAAAGAGCTATAACAGGCACATG 60.503 44.000 0.00 0.00 0.00 3.21
317 318 4.760530 AAGAGCTATAACAGGCACATGA 57.239 40.909 0.00 0.00 0.00 3.07
318 319 4.760530 AGAGCTATAACAGGCACATGAA 57.239 40.909 0.00 0.00 0.00 2.57
325 329 3.437795 AGGCACATGAAGCAGCGC 61.438 61.111 14.84 0.00 0.00 5.92
354 358 2.037772 TGGAGGAGAGAGTGTTTGCTTC 59.962 50.000 0.00 0.00 0.00 3.86
365 369 2.293399 GTGTTTGCTTCGTGGGATCTTT 59.707 45.455 0.00 0.00 0.00 2.52
409 413 3.068590 GGATAAACATGCACCCCAATGAG 59.931 47.826 0.00 0.00 0.00 2.90
423 427 2.872245 CCAATGAGTCAACGTGTTCACT 59.128 45.455 0.00 0.00 0.00 3.41
429 433 1.004927 GTCAACGTGTTCACTGTGCTC 60.005 52.381 2.12 0.00 0.00 4.26
446 450 2.255316 GCTCAGCGAAGAACAGTACTC 58.745 52.381 0.00 0.00 0.00 2.59
453 457 1.477295 GAAGAACAGTACTCCCTCCGG 59.523 57.143 0.00 0.00 0.00 5.14
456 460 2.042843 CAGTACTCCCTCCGGCCT 60.043 66.667 0.00 0.00 0.00 5.19
481 485 6.946340 AGTTTATAAGGCCCCTTTCATTTTG 58.054 36.000 4.68 0.00 37.47 2.44
495 499 6.484308 CCTTTCATTTTGAGCCAAAGTTTGAT 59.516 34.615 17.33 5.13 34.72 2.57
644 1704 6.560253 ACATAGTCAAATTTGGACACAGAC 57.440 37.500 17.90 7.03 37.74 3.51
660 1720 6.080648 ACACAGACTACAAAATCACTACGA 57.919 37.500 0.00 0.00 0.00 3.43
665 1725 2.109425 ACAAAATCACTACGAGGGCC 57.891 50.000 0.00 0.00 0.00 5.80
868 1951 3.602677 GATCCCGATCCGCGTCCA 61.603 66.667 4.92 0.00 38.67 4.02
908 1991 5.502153 GATCCACCGATCGCTTATAGTAT 57.498 43.478 10.32 0.00 35.83 2.12
912 1995 7.400599 TCCACCGATCGCTTATAGTATAAAT 57.599 36.000 10.32 0.00 0.00 1.40
1055 2152 0.381089 CTTATCGGCGTCCTTCTCGT 59.619 55.000 6.85 0.00 0.00 4.18
1252 2349 1.630244 CTTCGGCTTCTTCTGCACCG 61.630 60.000 3.43 3.43 45.15 4.94
1256 2353 2.032528 CTTCTTCTGCACCGGCCA 59.967 61.111 0.00 0.00 40.13 5.36
1307 2444 2.572647 CGTCGCCGTCGTGTACTC 60.573 66.667 0.00 0.00 36.96 2.59
1575 2716 2.838693 TCGTTCGACCACCCCACA 60.839 61.111 0.00 0.00 0.00 4.17
1581 2722 3.626924 GACCACCCCACAGACGCT 61.627 66.667 0.00 0.00 0.00 5.07
1584 2725 1.982395 CCACCCCACAGACGCTCTA 60.982 63.158 0.00 0.00 0.00 2.43
1599 2740 1.002990 TCTACTCGTCGGGCAGTCA 60.003 57.895 0.00 0.00 0.00 3.41
1603 2744 3.669036 CTCGTCGGGCAGTCACTCG 62.669 68.421 0.00 0.00 0.00 4.18
1611 2752 3.991051 CAGTCACTCGGGCACGGT 61.991 66.667 9.32 1.72 41.39 4.83
1638 2779 3.766691 ACCGCCAATACGTCGGCT 61.767 61.111 18.19 1.72 46.62 5.52
1794 2935 4.681978 AACGGCAGCCTCACGGTC 62.682 66.667 10.54 0.00 0.00 4.79
2291 3432 1.585521 CGCAGTTCTACTACGGCCG 60.586 63.158 26.86 26.86 36.10 6.13
2341 3482 1.901948 TCGGAGGTGTTCTCGCTGT 60.902 57.895 0.00 0.00 43.34 4.40
2346 3487 1.540267 GAGGTGTTCTCGCTGTAGACA 59.460 52.381 0.00 0.00 32.18 3.41
2353 3494 2.566529 CGCTGTAGACAGTGCGGA 59.433 61.111 10.10 0.00 45.86 5.54
2384 3525 1.078709 CACTACAACTCCACCATGCG 58.921 55.000 0.00 0.00 0.00 4.73
2502 5237 8.851541 TGTTACCAATAAAGTTCTCGGTTATT 57.148 30.769 0.00 0.00 0.00 1.40
2515 5250 6.411630 TCTCGGTTATTTGTACAAAATCCG 57.588 37.500 32.23 32.23 40.03 4.18
2516 5251 5.933463 TCTCGGTTATTTGTACAAAATCCGT 59.067 36.000 33.89 20.94 39.84 4.69
2529 5264 9.544314 TGTACAAAATCCGTTTAATTAATGTCG 57.456 29.630 0.00 5.14 0.00 4.35
2530 5265 9.002080 GTACAAAATCCGTTTAATTAATGTCGG 57.998 33.333 20.77 20.77 39.40 4.79
2535 5270 4.326817 TCCGTTTAATTAATGTCGGACGTG 59.673 41.667 23.26 13.25 41.45 4.49
2539 5274 6.183360 CGTTTAATTAATGTCGGACGTGAGAA 60.183 38.462 3.16 0.00 0.00 2.87
2543 5278 2.279582 ATGTCGGACGTGAGAATGAC 57.720 50.000 1.23 0.00 0.00 3.06
2550 5285 3.243877 CGGACGTGAGAATGACATGAATC 59.756 47.826 0.00 0.00 0.00 2.52
2566 5301 8.517878 TGACATGAATCTTTTCTCCATTCTTTC 58.482 33.333 0.00 0.00 32.78 2.62
2570 5305 8.256611 TGAATCTTTTCTCCATTCTTTCTACG 57.743 34.615 0.00 0.00 32.78 3.51
2601 5339 8.136057 AGCATCTTCGATAAGTCATGTAAAAG 57.864 34.615 0.00 0.00 34.13 2.27
2603 5341 6.903883 TCTTCGATAAGTCATGTAAAAGGC 57.096 37.500 0.00 0.00 34.13 4.35
2604 5342 6.640518 TCTTCGATAAGTCATGTAAAAGGCT 58.359 36.000 0.00 0.00 34.13 4.58
2605 5343 6.757010 TCTTCGATAAGTCATGTAAAAGGCTC 59.243 38.462 0.00 0.00 34.13 4.70
2606 5344 5.357257 TCGATAAGTCATGTAAAAGGCTCC 58.643 41.667 0.00 0.00 0.00 4.70
2607 5345 4.511826 CGATAAGTCATGTAAAAGGCTCCC 59.488 45.833 0.00 0.00 0.00 4.30
2608 5346 5.685075 CGATAAGTCATGTAAAAGGCTCCCT 60.685 44.000 0.00 0.00 33.87 4.20
2611 5349 5.514500 AGTCATGTAAAAGGCTCCCTAAA 57.486 39.130 0.00 0.00 31.13 1.85
2613 5351 6.494059 AGTCATGTAAAAGGCTCCCTAAAAT 58.506 36.000 0.00 0.00 31.13 1.82
2617 5355 8.058847 TCATGTAAAAGGCTCCCTAAAATGTAT 58.941 33.333 0.00 0.00 31.13 2.29
2618 5356 8.695456 CATGTAAAAGGCTCCCTAAAATGTATT 58.305 33.333 0.00 0.00 31.13 1.89
2619 5357 9.930158 ATGTAAAAGGCTCCCTAAAATGTATTA 57.070 29.630 0.00 0.00 31.13 0.98
2620 5358 9.930158 TGTAAAAGGCTCCCTAAAATGTATTAT 57.070 29.630 0.00 0.00 31.13 1.28
2625 5363 5.770162 GGCTCCCTAAAATGTATTATGCAGT 59.230 40.000 0.00 0.00 0.00 4.40
2630 5408 7.282224 TCCCTAAAATGTATTATGCAGTGTGTC 59.718 37.037 0.00 0.00 0.00 3.67
2633 5411 6.683974 AAATGTATTATGCAGTGTGTCTCC 57.316 37.500 0.00 0.00 0.00 3.71
2637 5415 2.557059 TATGCAGTGTGTCTCCGGCG 62.557 60.000 0.00 0.00 0.00 6.46
2654 5432 1.010013 CGGATCTCGCACGATTCGA 60.010 57.895 13.95 0.00 43.46 3.71
2655 5433 0.591488 CGGATCTCGCACGATTCGAA 60.591 55.000 13.95 0.00 43.46 3.71
2656 5434 1.556564 GGATCTCGCACGATTCGAAA 58.443 50.000 13.95 0.00 35.38 3.46
2660 5438 1.719246 TCTCGCACGATTCGAAAAGTG 59.281 47.619 23.58 23.58 35.38 3.16
2661 5439 0.787787 TCGCACGATTCGAAAAGTGG 59.212 50.000 26.65 19.70 35.35 4.00
2662 5440 0.511221 CGCACGATTCGAAAAGTGGT 59.489 50.000 26.65 8.36 35.35 4.16
2663 5441 1.070175 CGCACGATTCGAAAAGTGGTT 60.070 47.619 26.65 2.17 35.35 3.67
2664 5442 2.307049 GCACGATTCGAAAAGTGGTTG 58.693 47.619 26.65 8.63 35.35 3.77
2666 5444 3.541711 CACGATTCGAAAAGTGGTTGTC 58.458 45.455 21.45 4.48 0.00 3.18
2667 5445 3.247648 CACGATTCGAAAAGTGGTTGTCT 59.752 43.478 21.45 0.00 0.00 3.41
2668 5446 3.875134 ACGATTCGAAAAGTGGTTGTCTT 59.125 39.130 13.95 0.00 0.00 3.01
2669 5447 4.334481 ACGATTCGAAAAGTGGTTGTCTTT 59.666 37.500 13.95 0.00 36.81 2.52
2670 5448 4.670621 CGATTCGAAAAGTGGTTGTCTTTG 59.329 41.667 0.00 0.00 35.65 2.77
2673 5451 5.168526 TCGAAAAGTGGTTGTCTTTGATG 57.831 39.130 0.00 0.00 35.65 3.07
2674 5452 4.638421 TCGAAAAGTGGTTGTCTTTGATGT 59.362 37.500 0.00 0.00 35.65 3.06
2677 5455 6.797033 CGAAAAGTGGTTGTCTTTGATGTATC 59.203 38.462 0.00 0.00 35.65 2.24
2678 5456 6.575162 AAAGTGGTTGTCTTTGATGTATCC 57.425 37.500 0.00 0.00 34.43 2.59
2680 5458 5.630121 AGTGGTTGTCTTTGATGTATCCAA 58.370 37.500 0.00 0.00 0.00 3.53
2681 5459 6.248433 AGTGGTTGTCTTTGATGTATCCAAT 58.752 36.000 0.00 0.00 0.00 3.16
2682 5460 6.721208 AGTGGTTGTCTTTGATGTATCCAATT 59.279 34.615 0.00 0.00 0.00 2.32
2683 5461 7.233348 AGTGGTTGTCTTTGATGTATCCAATTT 59.767 33.333 0.00 0.00 0.00 1.82
2684 5462 7.872483 GTGGTTGTCTTTGATGTATCCAATTTT 59.128 33.333 0.00 0.00 0.00 1.82
2685 5463 8.428063 TGGTTGTCTTTGATGTATCCAATTTTT 58.572 29.630 0.00 0.00 0.00 1.94
2686 5464 8.711457 GGTTGTCTTTGATGTATCCAATTTTTG 58.289 33.333 0.00 0.00 0.00 2.44
2688 5466 9.829507 TTGTCTTTGATGTATCCAATTTTTGTT 57.170 25.926 0.00 0.00 0.00 2.83
2689 5467 9.474920 TGTCTTTGATGTATCCAATTTTTGTTC 57.525 29.630 0.00 0.00 0.00 3.18
2690 5468 8.638565 GTCTTTGATGTATCCAATTTTTGTTCG 58.361 33.333 0.00 0.00 0.00 3.95
2692 5470 8.514136 TTTGATGTATCCAATTTTTGTTCGTC 57.486 30.769 0.00 0.00 0.00 4.20
2693 5471 7.447374 TGATGTATCCAATTTTTGTTCGTCT 57.553 32.000 0.00 0.00 0.00 4.18
2694 5472 7.881142 TGATGTATCCAATTTTTGTTCGTCTT 58.119 30.769 0.00 0.00 0.00 3.01
2695 5473 8.356657 TGATGTATCCAATTTTTGTTCGTCTTT 58.643 29.630 0.00 0.00 0.00 2.52
2696 5474 7.922505 TGTATCCAATTTTTGTTCGTCTTTG 57.077 32.000 0.00 0.00 0.00 2.77
2697 5475 7.484975 TGTATCCAATTTTTGTTCGTCTTTGT 58.515 30.769 0.00 0.00 0.00 2.83
2698 5476 7.976734 TGTATCCAATTTTTGTTCGTCTTTGTT 59.023 29.630 0.00 0.00 0.00 2.83
2699 5477 6.879188 TCCAATTTTTGTTCGTCTTTGTTC 57.121 33.333 0.00 0.00 0.00 3.18
2702 5480 7.009999 TCCAATTTTTGTTCGTCTTTGTTCATG 59.990 33.333 0.00 0.00 0.00 3.07
2704 5482 6.624710 TTTTTGTTCGTCTTTGTTCATGTG 57.375 33.333 0.00 0.00 0.00 3.21
2705 5483 4.955925 TTGTTCGTCTTTGTTCATGTGT 57.044 36.364 0.00 0.00 0.00 3.72
2706 5484 4.530094 TGTTCGTCTTTGTTCATGTGTC 57.470 40.909 0.00 0.00 0.00 3.67
2707 5485 4.188462 TGTTCGTCTTTGTTCATGTGTCT 58.812 39.130 0.00 0.00 0.00 3.41
2708 5486 4.634004 TGTTCGTCTTTGTTCATGTGTCTT 59.366 37.500 0.00 0.00 0.00 3.01
2709 5487 4.794248 TCGTCTTTGTTCATGTGTCTTG 57.206 40.909 0.00 0.00 0.00 3.02
2710 5488 4.438148 TCGTCTTTGTTCATGTGTCTTGA 58.562 39.130 0.00 0.00 0.00 3.02
2712 5490 5.006649 TCGTCTTTGTTCATGTGTCTTGAAG 59.993 40.000 0.00 0.00 33.95 3.02
2713 5491 5.220662 CGTCTTTGTTCATGTGTCTTGAAGT 60.221 40.000 0.00 0.00 33.95 3.01
2714 5492 6.555315 GTCTTTGTTCATGTGTCTTGAAGTT 58.445 36.000 0.00 0.00 33.95 2.66
2715 5493 6.470235 GTCTTTGTTCATGTGTCTTGAAGTTG 59.530 38.462 0.00 0.00 33.95 3.16
2716 5494 4.898829 TGTTCATGTGTCTTGAAGTTGG 57.101 40.909 0.00 0.00 33.95 3.77
2717 5495 4.522114 TGTTCATGTGTCTTGAAGTTGGA 58.478 39.130 0.00 0.00 33.95 3.53
2718 5496 5.132502 TGTTCATGTGTCTTGAAGTTGGAT 58.867 37.500 0.00 0.00 33.95 3.41
2719 5497 5.239306 TGTTCATGTGTCTTGAAGTTGGATC 59.761 40.000 0.00 0.00 33.95 3.36
2721 5499 3.140325 TGTGTCTTGAAGTTGGATCCC 57.860 47.619 9.90 0.00 0.00 3.85
2722 5500 2.711009 TGTGTCTTGAAGTTGGATCCCT 59.289 45.455 9.90 0.00 0.00 4.20
2723 5501 3.138283 TGTGTCTTGAAGTTGGATCCCTT 59.862 43.478 9.90 6.09 0.00 3.95
2724 5502 3.753797 GTGTCTTGAAGTTGGATCCCTTC 59.246 47.826 18.83 18.83 38.03 3.46
2725 5503 3.003480 GTCTTGAAGTTGGATCCCTTCG 58.997 50.000 19.75 10.78 39.93 3.79
2726 5504 2.903784 TCTTGAAGTTGGATCCCTTCGA 59.096 45.455 19.75 17.85 39.93 3.71
2729 5507 3.107601 TGAAGTTGGATCCCTTCGATCT 58.892 45.455 19.75 1.26 45.90 2.75
2734 5512 4.717280 AGTTGGATCCCTTCGATCTAAGTT 59.283 41.667 9.90 0.00 45.13 2.66
2737 5515 4.962995 TGGATCCCTTCGATCTAAGTTTCT 59.037 41.667 9.90 0.00 45.90 2.52
2739 5517 6.070194 TGGATCCCTTCGATCTAAGTTTCTTT 60.070 38.462 9.90 0.00 45.90 2.52
2740 5518 6.824196 GGATCCCTTCGATCTAAGTTTCTTTT 59.176 38.462 0.00 0.00 45.90 2.27
2741 5519 7.011576 GGATCCCTTCGATCTAAGTTTCTTTTC 59.988 40.741 0.00 0.00 45.90 2.29
2743 5521 7.394816 TCCCTTCGATCTAAGTTTCTTTTCAT 58.605 34.615 6.27 0.00 0.00 2.57
2745 5523 7.394872 CCTTCGATCTAAGTTTCTTTTCATCG 58.605 38.462 6.27 0.00 34.55 3.84
2747 5525 5.291128 TCGATCTAAGTTTCTTTTCATCGGC 59.709 40.000 0.00 0.00 34.14 5.54
2749 5527 4.562082 TCTAAGTTTCTTTTCATCGGCGA 58.438 39.130 13.87 13.87 0.00 5.54
2751 5529 3.040147 AGTTTCTTTTCATCGGCGAGA 57.960 42.857 17.22 10.29 0.00 4.04
2753 5531 2.993899 GTTTCTTTTCATCGGCGAGAGA 59.006 45.455 17.22 13.30 0.00 3.10
2756 5534 2.166459 TCTTTTCATCGGCGAGAGATGT 59.834 45.455 17.22 0.00 44.20 3.06
2757 5535 3.380320 TCTTTTCATCGGCGAGAGATGTA 59.620 43.478 17.22 0.00 44.20 2.29
2759 5537 1.968704 TCATCGGCGAGAGATGTAGT 58.031 50.000 17.22 0.00 44.20 2.73
2761 5539 2.290916 TCATCGGCGAGAGATGTAGTTC 59.709 50.000 17.22 0.00 44.20 3.01
2762 5540 2.039818 TCGGCGAGAGATGTAGTTCT 57.960 50.000 4.99 0.00 0.00 3.01
2763 5541 1.671328 TCGGCGAGAGATGTAGTTCTG 59.329 52.381 4.99 0.00 0.00 3.02
2764 5542 1.671328 CGGCGAGAGATGTAGTTCTGA 59.329 52.381 0.00 0.00 0.00 3.27
2765 5543 2.292016 CGGCGAGAGATGTAGTTCTGAT 59.708 50.000 0.00 0.00 0.00 2.90
2766 5544 3.637432 GGCGAGAGATGTAGTTCTGATG 58.363 50.000 0.00 0.00 0.00 3.07
2768 5546 3.489908 GCGAGAGATGTAGTTCTGATGCA 60.490 47.826 0.00 0.00 0.00 3.96
2769 5547 4.795635 GCGAGAGATGTAGTTCTGATGCAT 60.796 45.833 0.00 0.00 0.00 3.96
2770 5548 5.288015 CGAGAGATGTAGTTCTGATGCATT 58.712 41.667 0.00 0.00 0.00 3.56
2771 5549 5.175308 CGAGAGATGTAGTTCTGATGCATTG 59.825 44.000 0.00 0.00 0.00 2.82
2772 5550 5.366460 AGAGATGTAGTTCTGATGCATTGG 58.634 41.667 0.00 0.00 0.00 3.16
2774 5552 5.121811 AGATGTAGTTCTGATGCATTGGTC 58.878 41.667 0.00 0.00 0.00 4.02
2775 5553 3.609853 TGTAGTTCTGATGCATTGGTCC 58.390 45.455 0.00 0.00 0.00 4.46
2776 5554 2.134789 AGTTCTGATGCATTGGTCCC 57.865 50.000 0.00 0.00 0.00 4.46
2777 5555 1.355381 AGTTCTGATGCATTGGTCCCA 59.645 47.619 0.00 0.00 0.00 4.37
2778 5556 2.024655 AGTTCTGATGCATTGGTCCCAT 60.025 45.455 0.00 0.00 0.00 4.00
2779 5557 2.061509 TCTGATGCATTGGTCCCATG 57.938 50.000 0.00 0.00 0.00 3.66
2780 5558 1.037493 CTGATGCATTGGTCCCATGG 58.963 55.000 4.14 4.14 0.00 3.66
2781 5559 0.397394 TGATGCATTGGTCCCATGGG 60.397 55.000 26.30 26.30 0.00 4.00
2782 5560 1.075076 ATGCATTGGTCCCATGGGG 60.075 57.895 30.93 14.39 46.11 4.96
2783 5561 3.156556 GCATTGGTCCCATGGGGC 61.157 66.667 30.93 29.72 43.94 5.80
2785 5563 1.002017 CATTGGTCCCATGGGGCTT 59.998 57.895 33.86 16.92 43.94 4.35
2786 5564 0.618393 CATTGGTCCCATGGGGCTTT 60.618 55.000 33.86 16.56 43.94 3.51
2787 5565 1.014804 ATTGGTCCCATGGGGCTTTA 58.985 50.000 33.86 19.58 43.94 1.85
2788 5566 0.334676 TTGGTCCCATGGGGCTTTAG 59.665 55.000 33.86 5.39 43.94 1.85
2789 5567 0.849094 TGGTCCCATGGGGCTTTAGT 60.849 55.000 33.86 0.00 43.94 2.24
2790 5568 1.218844 GGTCCCATGGGGCTTTAGTA 58.781 55.000 33.86 7.99 43.94 1.82
2792 5570 0.834612 TCCCATGGGGCTTTAGTACG 59.165 55.000 30.93 0.00 43.94 3.67
2793 5571 0.179029 CCCATGGGGCTTTAGTACGG 60.179 60.000 24.53 0.00 35.35 4.02
2795 5573 1.145377 ATGGGGCTTTAGTACGGCG 59.855 57.895 4.80 4.80 0.00 6.46
2796 5574 1.332144 ATGGGGCTTTAGTACGGCGA 61.332 55.000 16.62 0.00 0.00 5.54
2797 5575 1.332144 TGGGGCTTTAGTACGGCGAT 61.332 55.000 16.62 0.86 0.00 4.58
2799 5577 0.599466 GGGCTTTAGTACGGCGATCC 60.599 60.000 16.62 0.00 0.00 3.36
2800 5578 0.103572 GGCTTTAGTACGGCGATCCA 59.896 55.000 16.62 0.00 0.00 3.41
2801 5579 1.488527 GCTTTAGTACGGCGATCCAG 58.511 55.000 16.62 2.42 0.00 3.86
2803 5581 2.728922 CTTTAGTACGGCGATCCAGAC 58.271 52.381 16.62 1.20 0.00 3.51
2804 5582 2.048444 TTAGTACGGCGATCCAGACT 57.952 50.000 16.62 9.03 0.00 3.24
2805 5583 1.306148 TAGTACGGCGATCCAGACTG 58.694 55.000 16.62 0.00 0.00 3.51
2807 5585 0.248539 GTACGGCGATCCAGACTGTC 60.249 60.000 16.62 0.00 0.00 3.51
2809 5587 0.393944 ACGGCGATCCAGACTGTCTA 60.394 55.000 16.62 0.00 0.00 2.59
2811 5589 1.394618 GGCGATCCAGACTGTCTACT 58.605 55.000 10.47 0.00 0.00 2.57
2812 5590 2.573369 GGCGATCCAGACTGTCTACTA 58.427 52.381 10.47 0.00 0.00 1.82
2814 5592 2.943690 GCGATCCAGACTGTCTACTACA 59.056 50.000 10.47 0.00 36.42 2.74
2815 5593 3.377485 GCGATCCAGACTGTCTACTACAA 59.623 47.826 10.47 0.00 37.74 2.41
2817 5595 4.395231 CGATCCAGACTGTCTACTACAACA 59.605 45.833 10.47 0.00 37.74 3.33
2818 5596 5.106277 CGATCCAGACTGTCTACTACAACAA 60.106 44.000 10.47 0.00 37.74 2.83
2819 5597 5.707242 TCCAGACTGTCTACTACAACAAG 57.293 43.478 10.47 0.00 37.74 3.16
2821 5599 5.597182 TCCAGACTGTCTACTACAACAAGTT 59.403 40.000 10.47 0.00 37.74 2.66
2822 5600 6.774170 TCCAGACTGTCTACTACAACAAGTTA 59.226 38.462 10.47 0.00 37.74 2.24
2823 5601 7.450634 TCCAGACTGTCTACTACAACAAGTTAT 59.549 37.037 10.47 0.00 37.74 1.89
2824 5602 7.542477 CCAGACTGTCTACTACAACAAGTTATG 59.458 40.741 10.47 0.00 37.74 1.90
2826 5604 6.164176 ACTGTCTACTACAACAAGTTATGCC 58.836 40.000 0.00 0.00 37.74 4.40
2827 5605 6.014499 ACTGTCTACTACAACAAGTTATGCCT 60.014 38.462 0.00 0.00 37.74 4.75
2828 5606 6.163476 TGTCTACTACAACAAGTTATGCCTG 58.837 40.000 0.00 0.00 34.29 4.85
2829 5607 6.014925 TGTCTACTACAACAAGTTATGCCTGA 60.015 38.462 0.00 0.00 34.29 3.86
2830 5608 6.310711 GTCTACTACAACAAGTTATGCCTGAC 59.689 42.308 0.00 0.00 0.00 3.51
2831 5609 5.228945 ACTACAACAAGTTATGCCTGACT 57.771 39.130 0.00 0.00 0.00 3.41
2834 5612 4.067896 ACAACAAGTTATGCCTGACTCTG 58.932 43.478 0.00 0.00 0.00 3.35
2835 5613 3.340814 ACAAGTTATGCCTGACTCTGG 57.659 47.619 0.00 0.00 0.00 3.86
2842 5620 2.363018 CCTGACTCTGGCGAGGGA 60.363 66.667 1.17 0.00 41.71 4.20
2843 5621 2.422231 CCTGACTCTGGCGAGGGAG 61.422 68.421 1.17 0.00 41.71 4.30
2845 5623 3.151022 GACTCTGGCGAGGGAGGG 61.151 72.222 1.17 0.00 41.71 4.30
2847 5625 4.787280 CTCTGGCGAGGGAGGGGT 62.787 72.222 0.00 0.00 33.51 4.95
2850 5628 4.414956 TGGCGAGGGAGGGGTGAT 62.415 66.667 0.00 0.00 0.00 3.06
2851 5629 2.122989 GGCGAGGGAGGGGTGATA 60.123 66.667 0.00 0.00 0.00 2.15
2852 5630 1.764854 GGCGAGGGAGGGGTGATAA 60.765 63.158 0.00 0.00 0.00 1.75
2853 5631 1.128188 GGCGAGGGAGGGGTGATAAT 61.128 60.000 0.00 0.00 0.00 1.28
2854 5632 0.035458 GCGAGGGAGGGGTGATAATG 59.965 60.000 0.00 0.00 0.00 1.90
2855 5633 0.687354 CGAGGGAGGGGTGATAATGG 59.313 60.000 0.00 0.00 0.00 3.16
2857 5635 0.328450 AGGGAGGGGTGATAATGGCA 60.328 55.000 0.00 0.00 0.00 4.92
2858 5636 0.111253 GGGAGGGGTGATAATGGCAG 59.889 60.000 0.00 0.00 0.00 4.85
2859 5637 0.538287 GGAGGGGTGATAATGGCAGC 60.538 60.000 0.00 0.00 0.00 5.25
2860 5638 0.886490 GAGGGGTGATAATGGCAGCG 60.886 60.000 0.00 0.00 34.74 5.18
2861 5639 2.555547 GGGGTGATAATGGCAGCGC 61.556 63.158 0.00 0.00 39.02 5.92
2877 6418 4.135493 GCGCGTTCGGCTCACTTC 62.135 66.667 8.43 0.00 40.44 3.01
2878 6419 2.733218 CGCGTTCGGCTCACTTCA 60.733 61.111 0.00 0.00 40.44 3.02
2879 6420 2.307309 CGCGTTCGGCTCACTTCAA 61.307 57.895 0.00 0.00 40.44 2.69
2882 6423 0.179215 CGTTCGGCTCACTTCAATGC 60.179 55.000 0.00 0.00 0.00 3.56
2883 6424 1.160137 GTTCGGCTCACTTCAATGCT 58.840 50.000 0.00 0.00 0.00 3.79
2885 6426 2.939103 GTTCGGCTCACTTCAATGCTAT 59.061 45.455 0.00 0.00 0.00 2.97
2886 6427 2.554142 TCGGCTCACTTCAATGCTATG 58.446 47.619 0.00 0.00 0.00 2.23
2887 6428 1.003116 CGGCTCACTTCAATGCTATGC 60.003 52.381 0.00 0.00 0.00 3.14
2888 6429 1.336125 GGCTCACTTCAATGCTATGCC 59.664 52.381 0.00 0.00 0.00 4.40
2890 6431 2.033049 GCTCACTTCAATGCTATGCCTG 59.967 50.000 0.00 0.00 0.00 4.85
2891 6432 3.538591 CTCACTTCAATGCTATGCCTGA 58.461 45.455 0.00 0.00 0.00 3.86
2892 6433 3.273434 TCACTTCAATGCTATGCCTGAC 58.727 45.455 0.00 0.00 0.00 3.51
2893 6434 3.054875 TCACTTCAATGCTATGCCTGACT 60.055 43.478 0.00 0.00 0.00 3.41
2894 6435 3.311871 CACTTCAATGCTATGCCTGACTC 59.688 47.826 0.00 0.00 0.00 3.36
2895 6436 3.199508 ACTTCAATGCTATGCCTGACTCT 59.800 43.478 0.00 0.00 0.00 3.24
2896 6437 3.189618 TCAATGCTATGCCTGACTCTG 57.810 47.619 0.00 0.00 0.00 3.35
2897 6438 2.158856 TCAATGCTATGCCTGACTCTGG 60.159 50.000 0.00 0.00 0.00 3.86
2904 6445 2.363018 CCTGACTCTGGCGAGGGA 60.363 66.667 1.17 0.00 41.71 4.20
2905 6446 2.422231 CCTGACTCTGGCGAGGGAG 61.422 68.421 1.17 0.00 41.71 4.30
2906 6447 2.363018 TGACTCTGGCGAGGGAGG 60.363 66.667 1.17 0.00 41.71 4.30
2907 6448 3.151022 GACTCTGGCGAGGGAGGG 61.151 72.222 1.17 0.00 41.71 4.30
2908 6449 4.787280 ACTCTGGCGAGGGAGGGG 62.787 72.222 1.17 0.00 41.71 4.79
2909 6450 4.787280 CTCTGGCGAGGGAGGGGT 62.787 72.222 0.00 0.00 33.51 4.95
2912 6453 4.414956 TGGCGAGGGAGGGGTGAT 62.415 66.667 0.00 0.00 0.00 3.06
2913 6454 2.122989 GGCGAGGGAGGGGTGATA 60.123 66.667 0.00 0.00 0.00 2.15
2914 6455 1.764854 GGCGAGGGAGGGGTGATAA 60.765 63.158 0.00 0.00 0.00 1.75
2916 6457 0.035458 GCGAGGGAGGGGTGATAATG 59.965 60.000 0.00 0.00 0.00 1.90
2918 6459 0.402121 GAGGGAGGGGTGATAATGGC 59.598 60.000 0.00 0.00 0.00 4.40
2919 6460 0.328450 AGGGAGGGGTGATAATGGCA 60.328 55.000 0.00 0.00 0.00 4.92
2920 6461 0.111253 GGGAGGGGTGATAATGGCAG 59.889 60.000 0.00 0.00 0.00 4.85
2921 6462 0.538287 GGAGGGGTGATAATGGCAGC 60.538 60.000 0.00 0.00 0.00 5.25
2923 6464 2.555547 GGGGTGATAATGGCAGCGC 61.556 63.158 0.00 0.00 39.02 5.92
2924 6465 2.633657 GGTGATAATGGCAGCGCG 59.366 61.111 0.00 0.00 0.00 6.86
2926 6467 3.639008 TGATAATGGCAGCGCGCG 61.639 61.111 28.44 28.44 43.84 6.86
2927 6468 3.640000 GATAATGGCAGCGCGCGT 61.640 61.111 32.35 15.53 43.84 6.01
2929 6470 3.168237 ATAATGGCAGCGCGCGTTC 62.168 57.895 32.35 19.42 43.84 3.95
2939 6480 4.135493 GCGCGTTCGGCTCACTTC 62.135 66.667 8.43 0.00 40.44 3.01
2942 6483 1.626654 CGCGTTCGGCTCACTTCAAT 61.627 55.000 0.00 0.00 40.44 2.57
2943 6484 0.179215 GCGTTCGGCTCACTTCAATG 60.179 55.000 0.00 0.00 39.11 2.82
2946 6487 2.346803 GTTCGGCTCACTTCAATGCTA 58.653 47.619 0.00 0.00 0.00 3.49
2947 6488 2.939103 GTTCGGCTCACTTCAATGCTAT 59.061 45.455 0.00 0.00 0.00 2.97
2948 6489 2.554142 TCGGCTCACTTCAATGCTATG 58.446 47.619 0.00 0.00 0.00 2.23
2949 6490 1.003116 CGGCTCACTTCAATGCTATGC 60.003 52.381 0.00 0.00 0.00 3.14
2950 6491 1.336125 GGCTCACTTCAATGCTATGCC 59.664 52.381 0.00 0.00 0.00 4.40
2952 6493 2.033049 GCTCACTTCAATGCTATGCCTG 59.967 50.000 0.00 0.00 0.00 4.85
2953 6494 3.538591 CTCACTTCAATGCTATGCCTGA 58.461 45.455 0.00 0.00 0.00 3.86
2954 6495 3.273434 TCACTTCAATGCTATGCCTGAC 58.727 45.455 0.00 0.00 0.00 3.51
2955 6496 3.054875 TCACTTCAATGCTATGCCTGACT 60.055 43.478 0.00 0.00 0.00 3.41
2956 6497 3.311871 CACTTCAATGCTATGCCTGACTC 59.688 47.826 0.00 0.00 0.00 3.36
2958 6499 3.189618 TCAATGCTATGCCTGACTCTG 57.810 47.619 0.00 0.00 0.00 3.35
2959 6500 2.158856 TCAATGCTATGCCTGACTCTGG 60.159 50.000 0.00 0.00 0.00 3.86
2965 6506 4.154347 GCCTGACTCTGGCGAGGG 62.154 72.222 10.89 0.00 41.71 4.30
2967 6508 2.422231 CCTGACTCTGGCGAGGGAG 61.422 68.421 1.17 0.00 41.71 4.30
2968 6509 2.363018 TGACTCTGGCGAGGGAGG 60.363 66.667 1.17 0.00 41.71 4.30
2969 6510 3.151022 GACTCTGGCGAGGGAGGG 61.151 72.222 1.17 0.00 41.71 4.30
2970 6511 4.787280 ACTCTGGCGAGGGAGGGG 62.787 72.222 1.17 0.00 41.71 4.79
2974 6515 4.414956 TGGCGAGGGAGGGGTGAT 62.415 66.667 0.00 0.00 0.00 3.06
2975 6516 2.122989 GGCGAGGGAGGGGTGATA 60.123 66.667 0.00 0.00 0.00 2.15
2976 6517 1.764854 GGCGAGGGAGGGGTGATAA 60.765 63.158 0.00 0.00 0.00 1.75
2977 6518 1.128188 GGCGAGGGAGGGGTGATAAT 61.128 60.000 0.00 0.00 0.00 1.28
2979 6520 0.687354 CGAGGGAGGGGTGATAATGG 59.313 60.000 0.00 0.00 0.00 3.16
2980 6521 0.402121 GAGGGAGGGGTGATAATGGC 59.598 60.000 0.00 0.00 0.00 4.40
2981 6522 0.328450 AGGGAGGGGTGATAATGGCA 60.328 55.000 0.00 0.00 0.00 4.92
2983 6524 0.538287 GGAGGGGTGATAATGGCAGC 60.538 60.000 0.00 0.00 0.00 5.25
2985 6526 2.555547 GGGGTGATAATGGCAGCGC 61.556 63.158 0.00 0.00 39.02 5.92
2986 6527 2.633657 GGTGATAATGGCAGCGCG 59.366 61.111 0.00 0.00 0.00 6.86
2987 6528 2.051882 GTGATAATGGCAGCGCGC 60.052 61.111 26.66 26.66 41.28 6.86
2988 6529 3.639008 TGATAATGGCAGCGCGCG 61.639 61.111 28.44 28.44 43.84 6.86
2989 6530 3.640000 GATAATGGCAGCGCGCGT 61.640 61.111 32.35 15.53 43.84 6.01
2990 6531 3.168237 GATAATGGCAGCGCGCGTT 62.168 57.895 32.35 24.65 43.84 4.84
2991 6532 3.168237 ATAATGGCAGCGCGCGTTC 62.168 57.895 32.35 19.42 43.84 3.95
3001 6542 4.135493 GCGCGTTCGGCTCACTTC 62.135 66.667 8.43 0.00 40.44 3.01
3002 6543 2.733218 CGCGTTCGGCTCACTTCA 60.733 61.111 0.00 0.00 40.44 3.02
3003 6544 2.307309 CGCGTTCGGCTCACTTCAA 61.307 57.895 0.00 0.00 40.44 2.69
3005 6546 0.179215 GCGTTCGGCTCACTTCAATG 60.179 55.000 0.00 0.00 39.11 2.82
3006 6547 0.179215 CGTTCGGCTCACTTCAATGC 60.179 55.000 0.00 0.00 0.00 3.56
3007 6548 1.160137 GTTCGGCTCACTTCAATGCT 58.840 50.000 0.00 0.00 0.00 3.79
3008 6549 1.537202 GTTCGGCTCACTTCAATGCTT 59.463 47.619 0.00 0.00 0.00 3.91
3009 6550 1.159285 TCGGCTCACTTCAATGCTTG 58.841 50.000 0.00 0.00 0.00 4.01
3010 6551 0.877071 CGGCTCACTTCAATGCTTGT 59.123 50.000 0.00 0.00 0.00 3.16
3013 6554 3.077359 GGCTCACTTCAATGCTTGTAGT 58.923 45.455 3.52 3.52 41.20 2.73
3014 6555 3.503748 GGCTCACTTCAATGCTTGTAGTT 59.496 43.478 5.77 0.00 38.94 2.24
3015 6556 4.470462 GCTCACTTCAATGCTTGTAGTTG 58.530 43.478 5.77 4.51 38.94 3.16
3016 6557 4.023707 GCTCACTTCAATGCTTGTAGTTGT 60.024 41.667 5.77 0.00 38.94 3.32
3017 6558 5.506317 GCTCACTTCAATGCTTGTAGTTGTT 60.506 40.000 5.77 0.00 38.94 2.83
3018 6559 5.820131 TCACTTCAATGCTTGTAGTTGTTG 58.180 37.500 5.77 0.00 38.94 3.33
3019 6560 4.442073 CACTTCAATGCTTGTAGTTGTTGC 59.558 41.667 5.77 0.00 38.94 4.17
3020 6561 4.339247 ACTTCAATGCTTGTAGTTGTTGCT 59.661 37.500 3.52 0.00 37.95 3.91
3021 6562 5.530915 ACTTCAATGCTTGTAGTTGTTGCTA 59.469 36.000 3.52 0.00 37.95 3.49
3022 6563 5.611796 TCAATGCTTGTAGTTGTTGCTAG 57.388 39.130 0.00 0.00 0.00 3.42
3023 6564 5.304778 TCAATGCTTGTAGTTGTTGCTAGA 58.695 37.500 0.00 0.00 0.00 2.43
3024 6565 5.939883 TCAATGCTTGTAGTTGTTGCTAGAT 59.060 36.000 0.00 0.00 0.00 1.98
3025 6566 5.808042 ATGCTTGTAGTTGTTGCTAGATG 57.192 39.130 0.00 0.00 0.00 2.90
3026 6567 4.002982 TGCTTGTAGTTGTTGCTAGATGG 58.997 43.478 0.00 0.00 0.00 3.51
3027 6568 4.003648 GCTTGTAGTTGTTGCTAGATGGT 58.996 43.478 0.00 0.00 0.00 3.55
3028 6569 4.093556 GCTTGTAGTTGTTGCTAGATGGTC 59.906 45.833 0.00 0.00 0.00 4.02
3029 6570 5.482908 CTTGTAGTTGTTGCTAGATGGTCT 58.517 41.667 0.00 0.00 0.00 3.85
3030 6571 6.599356 TTGTAGTTGTTGCTAGATGGTCTA 57.401 37.500 0.00 0.00 0.00 2.59
3031 6572 6.791867 TGTAGTTGTTGCTAGATGGTCTAT 57.208 37.500 0.00 0.00 0.00 1.98
3032 6573 7.891498 TGTAGTTGTTGCTAGATGGTCTATA 57.109 36.000 0.00 0.00 0.00 1.31
3033 6574 8.301252 TGTAGTTGTTGCTAGATGGTCTATAA 57.699 34.615 0.00 0.00 0.00 0.98
3034 6575 8.755028 TGTAGTTGTTGCTAGATGGTCTATAAA 58.245 33.333 0.00 0.00 0.00 1.40
3035 6576 9.765795 GTAGTTGTTGCTAGATGGTCTATAAAT 57.234 33.333 0.00 0.00 0.00 1.40
3039 6580 9.725019 TTGTTGCTAGATGGTCTATAAATATGG 57.275 33.333 0.00 0.00 0.00 2.74
3040 6581 9.100197 TGTTGCTAGATGGTCTATAAATATGGA 57.900 33.333 0.00 0.00 0.00 3.41
3043 6584 9.271921 TGCTAGATGGTCTATAAATATGGATGT 57.728 33.333 0.00 0.00 0.00 3.06
3063 6604 8.233868 TGGATGTATTGTTATTTCTTGTGTTCG 58.766 33.333 0.00 0.00 0.00 3.95
3064 6605 7.218204 GGATGTATTGTTATTTCTTGTGTTCGC 59.782 37.037 0.00 0.00 0.00 4.70
3065 6606 7.197071 TGTATTGTTATTTCTTGTGTTCGCT 57.803 32.000 0.00 0.00 0.00 4.93
3066 6607 7.075121 TGTATTGTTATTTCTTGTGTTCGCTG 58.925 34.615 0.00 0.00 0.00 5.18
3067 6608 5.493133 TTGTTATTTCTTGTGTTCGCTGT 57.507 34.783 0.00 0.00 0.00 4.40
3068 6609 6.606234 TTGTTATTTCTTGTGTTCGCTGTA 57.394 33.333 0.00 0.00 0.00 2.74
3069 6610 6.795098 TGTTATTTCTTGTGTTCGCTGTAT 57.205 33.333 0.00 0.00 0.00 2.29
3070 6611 6.827641 TGTTATTTCTTGTGTTCGCTGTATC 58.172 36.000 0.00 0.00 0.00 2.24
3071 6612 4.584029 ATTTCTTGTGTTCGCTGTATCG 57.416 40.909 0.00 0.00 0.00 2.92
3072 6613 3.291809 TTCTTGTGTTCGCTGTATCGA 57.708 42.857 0.00 0.00 36.60 3.59
3073 6614 3.291809 TCTTGTGTTCGCTGTATCGAA 57.708 42.857 0.00 0.00 44.96 3.71
3084 6625 7.946655 TTCGCTGTATCGAAGATGAATAAAT 57.053 32.000 0.00 0.00 45.12 1.40
3085 6626 7.946655 TCGCTGTATCGAAGATGAATAAATT 57.053 32.000 0.00 0.00 45.12 1.82
3086 6627 7.787084 TCGCTGTATCGAAGATGAATAAATTG 58.213 34.615 0.00 0.00 45.12 2.32
3087 6628 7.651704 TCGCTGTATCGAAGATGAATAAATTGA 59.348 33.333 0.00 0.00 45.12 2.57
3088 6629 8.275632 CGCTGTATCGAAGATGAATAAATTGAA 58.724 33.333 0.00 0.00 45.12 2.69
3089 6630 9.935682 GCTGTATCGAAGATGAATAAATTGAAA 57.064 29.630 0.00 0.00 45.12 2.69
3147 6688 6.810182 CCTTATAATTTAGTGTCCCCGATACG 59.190 42.308 0.00 0.00 0.00 3.06
3148 6689 2.521105 ATTTAGTGTCCCCGATACGC 57.479 50.000 0.00 0.00 0.00 4.42
3150 6691 1.394266 TTAGTGTCCCCGATACGCCC 61.394 60.000 0.00 0.00 0.00 6.13
3152 6693 2.836360 TGTCCCCGATACGCCCTC 60.836 66.667 0.00 0.00 0.00 4.30
3161 6702 2.545322 CCGATACGCCCTCCTCTAAAAC 60.545 54.545 0.00 0.00 0.00 2.43
3162 6703 2.361438 CGATACGCCCTCCTCTAAAACT 59.639 50.000 0.00 0.00 0.00 2.66
3163 6704 3.718815 GATACGCCCTCCTCTAAAACTG 58.281 50.000 0.00 0.00 0.00 3.16
3164 6705 0.036294 ACGCCCTCCTCTAAAACTGC 60.036 55.000 0.00 0.00 0.00 4.40
3169 6710 3.191581 GCCCTCCTCTAAAACTGCTTTTC 59.808 47.826 0.00 0.00 31.74 2.29
3170 6711 4.657013 CCCTCCTCTAAAACTGCTTTTCT 58.343 43.478 0.00 0.00 31.74 2.52
3172 6713 5.182190 CCCTCCTCTAAAACTGCTTTTCTTC 59.818 44.000 0.00 0.00 31.74 2.87
3177 6718 9.220767 TCCTCTAAAACTGCTTTTCTTCTATTC 57.779 33.333 0.00 0.00 31.74 1.75
3211 6847 7.660617 AGCTAACATATAGATGGCATATGCATC 59.339 37.037 28.07 24.59 44.36 3.91
3284 6920 9.205719 CACATAATTCATCATTTCAAAACCACA 57.794 29.630 0.00 0.00 0.00 4.17
3298 6934 9.442047 TTTCAAAACCACAATTTATGAAGTTGT 57.558 25.926 0.00 0.00 36.57 3.32
3299 6935 8.641499 TCAAAACCACAATTTATGAAGTTGTC 57.359 30.769 0.00 0.00 34.09 3.18
3300 6936 7.708752 TCAAAACCACAATTTATGAAGTTGTCC 59.291 33.333 0.00 0.00 34.09 4.02
3301 6937 6.723298 AACCACAATTTATGAAGTTGTCCA 57.277 33.333 0.00 0.00 34.09 4.02
3303 6939 7.301868 ACCACAATTTATGAAGTTGTCCAAT 57.698 32.000 0.00 0.00 34.09 3.16
3304 6940 8.415950 ACCACAATTTATGAAGTTGTCCAATA 57.584 30.769 0.00 0.00 34.09 1.90
3305 6941 9.034800 ACCACAATTTATGAAGTTGTCCAATAT 57.965 29.630 0.00 0.00 34.09 1.28
3306 6942 9.874205 CCACAATTTATGAAGTTGTCCAATATT 57.126 29.630 0.00 0.00 34.09 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.203915 GTCATTTCCAAGGCGGTTTTATTTTT 59.796 34.615 0.00 0.00 35.57 1.94
52 53 5.699001 GTCATTTCCAAGGCGGTTTTATTTT 59.301 36.000 0.00 0.00 35.57 1.82
53 54 5.234752 GTCATTTCCAAGGCGGTTTTATTT 58.765 37.500 0.00 0.00 35.57 1.40
54 55 4.322424 GGTCATTTCCAAGGCGGTTTTATT 60.322 41.667 0.00 0.00 35.57 1.40
55 56 3.194755 GGTCATTTCCAAGGCGGTTTTAT 59.805 43.478 0.00 0.00 35.57 1.40
56 57 2.559231 GGTCATTTCCAAGGCGGTTTTA 59.441 45.455 0.00 0.00 35.57 1.52
57 58 1.343142 GGTCATTTCCAAGGCGGTTTT 59.657 47.619 0.00 0.00 35.57 2.43
58 59 0.966179 GGTCATTTCCAAGGCGGTTT 59.034 50.000 0.00 0.00 35.57 3.27
59 60 0.178975 TGGTCATTTCCAAGGCGGTT 60.179 50.000 0.00 0.00 34.24 4.44
60 61 0.178975 TTGGTCATTTCCAAGGCGGT 60.179 50.000 0.00 0.00 41.79 5.68
61 62 0.243636 GTTGGTCATTTCCAAGGCGG 59.756 55.000 0.00 0.00 46.35 6.13
62 63 0.109781 CGTTGGTCATTTCCAAGGCG 60.110 55.000 5.47 0.98 46.35 5.52
63 64 1.243902 TCGTTGGTCATTTCCAAGGC 58.756 50.000 11.64 0.00 46.35 4.35
64 65 2.030274 GGTTCGTTGGTCATTTCCAAGG 60.030 50.000 10.60 10.60 46.35 3.61
65 66 2.350388 CGGTTCGTTGGTCATTTCCAAG 60.350 50.000 0.00 0.00 46.35 3.61
66 67 1.604755 CGGTTCGTTGGTCATTTCCAA 59.395 47.619 0.00 0.00 44.03 3.53
67 68 1.231221 CGGTTCGTTGGTCATTTCCA 58.769 50.000 0.00 0.00 35.49 3.53
68 69 0.519961 CCGGTTCGTTGGTCATTTCC 59.480 55.000 0.00 0.00 0.00 3.13
69 70 0.519961 CCCGGTTCGTTGGTCATTTC 59.480 55.000 0.00 0.00 0.00 2.17
70 71 0.108963 TCCCGGTTCGTTGGTCATTT 59.891 50.000 0.00 0.00 0.00 2.32
71 72 0.604511 GTCCCGGTTCGTTGGTCATT 60.605 55.000 0.00 0.00 0.00 2.57
72 73 1.004200 GTCCCGGTTCGTTGGTCAT 60.004 57.895 0.00 0.00 0.00 3.06
73 74 2.422591 GTCCCGGTTCGTTGGTCA 59.577 61.111 0.00 0.00 0.00 4.02
74 75 2.357881 GGTCCCGGTTCGTTGGTC 60.358 66.667 0.00 0.00 0.00 4.02
75 76 2.268167 TTTGGTCCCGGTTCGTTGGT 62.268 55.000 0.00 0.00 0.00 3.67
76 77 1.102222 TTTTGGTCCCGGTTCGTTGG 61.102 55.000 0.00 0.00 0.00 3.77
77 78 0.029700 GTTTTGGTCCCGGTTCGTTG 59.970 55.000 0.00 0.00 0.00 4.10
78 79 1.102809 GGTTTTGGTCCCGGTTCGTT 61.103 55.000 0.00 0.00 0.00 3.85
79 80 1.526686 GGTTTTGGTCCCGGTTCGT 60.527 57.895 0.00 0.00 0.00 3.85
80 81 1.102222 TTGGTTTTGGTCCCGGTTCG 61.102 55.000 0.00 0.00 0.00 3.95
81 82 0.386476 GTTGGTTTTGGTCCCGGTTC 59.614 55.000 0.00 0.00 0.00 3.62
82 83 0.324460 TGTTGGTTTTGGTCCCGGTT 60.324 50.000 0.00 0.00 0.00 4.44
83 84 0.324460 TTGTTGGTTTTGGTCCCGGT 60.324 50.000 0.00 0.00 0.00 5.28
84 85 1.044611 ATTGTTGGTTTTGGTCCCGG 58.955 50.000 0.00 0.00 0.00 5.73
85 86 4.323553 TTTATTGTTGGTTTTGGTCCCG 57.676 40.909 0.00 0.00 0.00 5.14
105 106 9.869757 ACAACTATTGCTTTCTAACTTGTTTTT 57.130 25.926 0.00 0.00 0.00 1.94
108 109 9.301153 CAAACAACTATTGCTTTCTAACTTGTT 57.699 29.630 0.00 0.00 32.17 2.83
133 134 5.109500 TGACAGTAACCATTATGCCATCA 57.891 39.130 0.00 0.00 0.00 3.07
134 135 6.441274 CAATGACAGTAACCATTATGCCATC 58.559 40.000 0.00 0.00 32.31 3.51
145 146 2.147958 TCAACGCCAATGACAGTAACC 58.852 47.619 0.00 0.00 0.00 2.85
163 164 2.724977 ACTCGCGATCACTTTCTTCA 57.275 45.000 10.36 0.00 0.00 3.02
178 179 2.170985 CGCCGCAGTTCAAACTCG 59.829 61.111 0.00 0.99 37.08 4.18
190 191 2.258286 AAAAAGATGCACCGCCGC 59.742 55.556 0.00 0.00 0.00 6.53
204 205 7.170998 TGCCTTTTCTGTTAAAACGTTCAAAAA 59.829 29.630 0.00 4.90 0.00 1.94
212 213 4.274950 TCTCCTGCCTTTTCTGTTAAAACG 59.725 41.667 0.00 0.00 0.00 3.60
222 223 4.013050 GCCCATATATCTCCTGCCTTTTC 58.987 47.826 0.00 0.00 0.00 2.29
262 263 0.872388 CCTAAAACGCACCACACCTC 59.128 55.000 0.00 0.00 0.00 3.85
275 276 0.818445 TCGCAAACGGGTGCCTAAAA 60.818 50.000 6.96 0.00 41.73 1.52
278 279 0.818445 TTTTCGCAAACGGGTGCCTA 60.818 50.000 6.96 0.00 41.73 3.93
284 285 1.153353 TAGCTCTTTTCGCAAACGGG 58.847 50.000 0.00 0.00 40.63 5.28
285 286 4.142988 TGTTATAGCTCTTTTCGCAAACGG 60.143 41.667 0.00 0.00 40.63 4.44
286 287 4.953269 TGTTATAGCTCTTTTCGCAAACG 58.047 39.130 0.00 0.00 42.01 3.60
287 288 5.324697 CCTGTTATAGCTCTTTTCGCAAAC 58.675 41.667 0.00 0.00 0.00 2.93
294 295 5.500234 TCATGTGCCTGTTATAGCTCTTTT 58.500 37.500 0.00 0.00 0.00 2.27
301 302 3.003068 GCTGCTTCATGTGCCTGTTATAG 59.997 47.826 10.03 2.26 0.00 1.31
310 311 4.824166 CGGCGCTGCTTCATGTGC 62.824 66.667 7.64 6.53 38.78 4.57
311 312 4.170062 CCGGCGCTGCTTCATGTG 62.170 66.667 11.81 0.00 0.00 3.21
312 313 4.704833 ACCGGCGCTGCTTCATGT 62.705 61.111 11.81 0.00 0.00 3.21
313 314 3.869272 GACCGGCGCTGCTTCATG 61.869 66.667 11.81 0.00 0.00 3.07
325 329 1.658686 CTCTCTCCTCCAACGACCGG 61.659 65.000 0.00 0.00 0.00 5.28
332 336 2.050144 AGCAAACACTCTCTCCTCCAA 58.950 47.619 0.00 0.00 0.00 3.53
365 369 3.252215 CAGGCACTTATCGTGTGGAAAAA 59.748 43.478 0.00 0.00 45.57 1.94
372 376 4.189231 GTTTATCCAGGCACTTATCGTGT 58.811 43.478 0.00 0.00 45.57 4.49
385 389 2.142356 TGGGGTGCATGTTTATCCAG 57.858 50.000 0.00 0.00 0.00 3.86
391 395 1.895131 GACTCATTGGGGTGCATGTTT 59.105 47.619 0.00 0.00 0.00 2.83
400 404 1.535462 GAACACGTTGACTCATTGGGG 59.465 52.381 0.00 0.00 0.00 4.96
409 413 1.004927 GAGCACAGTGAACACGTTGAC 60.005 52.381 4.15 0.00 36.20 3.18
423 427 0.104855 ACTGTTCTTCGCTGAGCACA 59.895 50.000 4.88 0.00 0.00 4.57
429 433 1.546476 AGGGAGTACTGTTCTTCGCTG 59.454 52.381 0.00 0.00 0.00 5.18
456 460 7.896496 TCAAAATGAAAGGGGCCTTATAAACTA 59.104 33.333 0.84 0.00 34.84 2.24
469 473 4.341366 ACTTTGGCTCAAAATGAAAGGG 57.659 40.909 0.00 0.00 32.75 3.95
471 475 6.907206 TCAAACTTTGGCTCAAAATGAAAG 57.093 33.333 1.62 0.00 32.75 2.62
481 485 9.129209 GTTAAATTACTGATCAAACTTTGGCTC 57.871 33.333 0.00 0.97 0.00 4.70
617 621 9.295825 TCTGTGTCCAAATTTGACTATGTATTT 57.704 29.630 19.86 0.00 0.00 1.40
620 624 7.450074 AGTCTGTGTCCAAATTTGACTATGTA 58.550 34.615 19.86 0.00 32.44 2.29
625 1685 5.680619 TGTAGTCTGTGTCCAAATTTGACT 58.319 37.500 19.86 14.25 37.17 3.41
628 1688 7.920151 TGATTTTGTAGTCTGTGTCCAAATTTG 59.080 33.333 11.40 11.40 0.00 2.32
631 1691 6.772716 AGTGATTTTGTAGTCTGTGTCCAAAT 59.227 34.615 0.00 0.00 0.00 2.32
642 1702 3.864003 GCCCTCGTAGTGATTTTGTAGTC 59.136 47.826 0.00 0.00 0.00 2.59
644 1704 3.118738 AGGCCCTCGTAGTGATTTTGTAG 60.119 47.826 0.00 0.00 0.00 2.74
660 1720 3.415087 GTGCAGGATGGAGGCCCT 61.415 66.667 0.00 0.00 36.81 5.19
908 1991 3.804786 TCGATGGAGCGTGGTTATTTA 57.195 42.857 0.00 0.00 0.00 1.40
912 1995 0.030235 CGATCGATGGAGCGTGGTTA 59.970 55.000 10.26 0.00 46.35 2.85
1038 2135 1.769098 CGACGAGAAGGACGCCGATA 61.769 60.000 0.00 0.00 38.71 2.92
1082 2179 2.388232 GGGTAGTCAAACCGCTGCG 61.388 63.158 16.34 16.34 40.73 5.18
1581 2722 1.002990 TGACTGCCCGACGAGTAGA 60.003 57.895 0.74 0.00 0.00 2.59
1584 2725 2.597805 AGTGACTGCCCGACGAGT 60.598 61.111 0.00 0.00 0.00 4.18
1762 2903 1.155158 CGTTTGTGTACGTCGCGTG 60.155 57.895 5.77 2.22 41.39 5.34
1824 2965 2.439156 GTGGGCAGCTGGATGGTC 60.439 66.667 17.12 0.00 0.00 4.02
2209 3350 1.760086 CCTCGCTCACCCTCTCCAT 60.760 63.158 0.00 0.00 0.00 3.41
2341 3482 2.044555 CCTCCGTCCGCACTGTCTA 61.045 63.158 0.00 0.00 0.00 2.59
2353 3494 1.404479 TTGTAGTGCACCACCTCCGT 61.404 55.000 14.63 0.00 34.49 4.69
2384 3525 1.098050 CTTGGCCTGCACCTTGATAC 58.902 55.000 3.32 0.00 0.00 2.24
2515 5250 6.636666 TCTCACGTCCGACATTAATTAAAC 57.363 37.500 1.21 0.00 0.00 2.01
2516 5251 7.546316 TCATTCTCACGTCCGACATTAATTAAA 59.454 33.333 1.21 0.00 0.00 1.52
2522 5257 3.191791 TGTCATTCTCACGTCCGACATTA 59.808 43.478 0.00 0.00 0.00 1.90
2523 5258 2.029380 TGTCATTCTCACGTCCGACATT 60.029 45.455 0.00 0.00 0.00 2.71
2524 5259 1.544246 TGTCATTCTCACGTCCGACAT 59.456 47.619 0.00 0.00 0.00 3.06
2525 5260 0.955905 TGTCATTCTCACGTCCGACA 59.044 50.000 0.00 0.00 0.00 4.35
2527 5262 1.816224 TCATGTCATTCTCACGTCCGA 59.184 47.619 0.00 0.00 0.00 4.55
2528 5263 2.278026 TCATGTCATTCTCACGTCCG 57.722 50.000 0.00 0.00 0.00 4.79
2529 5264 4.437239 AGATTCATGTCATTCTCACGTCC 58.563 43.478 0.00 0.00 0.00 4.79
2530 5265 6.414408 AAAGATTCATGTCATTCTCACGTC 57.586 37.500 0.00 0.00 0.00 4.34
2531 5266 6.652481 AGAAAAGATTCATGTCATTCTCACGT 59.348 34.615 0.00 0.00 38.06 4.49
2535 5270 7.621428 TGGAGAAAAGATTCATGTCATTCTC 57.379 36.000 15.90 15.90 39.75 2.87
2539 5274 8.591114 AAGAATGGAGAAAAGATTCATGTCAT 57.409 30.769 0.00 0.00 38.06 3.06
2550 5285 9.204570 TCTTAACGTAGAAAGAATGGAGAAAAG 57.795 33.333 5.68 0.00 32.25 2.27
2566 5301 7.133513 ACTTATCGAAGATGCTCTTAACGTAG 58.866 38.462 0.00 0.00 45.12 3.51
2570 5305 7.436673 ACATGACTTATCGAAGATGCTCTTAAC 59.563 37.037 0.00 0.00 45.12 2.01
2583 5321 5.357257 GGAGCCTTTTACATGACTTATCGA 58.643 41.667 0.00 0.00 0.00 3.59
2584 5322 4.511826 GGGAGCCTTTTACATGACTTATCG 59.488 45.833 0.00 0.00 0.00 2.92
2585 5323 5.685728 AGGGAGCCTTTTACATGACTTATC 58.314 41.667 0.00 0.00 0.00 1.75
2586 5324 5.717119 AGGGAGCCTTTTACATGACTTAT 57.283 39.130 0.00 0.00 0.00 1.73
2587 5325 6.630203 TTAGGGAGCCTTTTACATGACTTA 57.370 37.500 0.00 0.00 34.61 2.24
2588 5326 5.514500 TTAGGGAGCCTTTTACATGACTT 57.486 39.130 0.00 0.00 34.61 3.01
2590 5328 6.152831 ACATTTTAGGGAGCCTTTTACATGAC 59.847 38.462 0.00 0.00 34.61 3.06
2593 5331 8.838649 AATACATTTTAGGGAGCCTTTTACAT 57.161 30.769 0.00 0.00 34.61 2.29
2596 5334 8.856103 GCATAATACATTTTAGGGAGCCTTTTA 58.144 33.333 0.00 0.00 34.61 1.52
2601 5339 5.770162 ACTGCATAATACATTTTAGGGAGCC 59.230 40.000 0.00 0.00 35.53 4.70
2603 5341 7.283127 ACACACTGCATAATACATTTTAGGGAG 59.717 37.037 0.00 0.00 37.35 4.30
2604 5342 7.116075 ACACACTGCATAATACATTTTAGGGA 58.884 34.615 0.00 0.00 0.00 4.20
2605 5343 7.283127 AGACACACTGCATAATACATTTTAGGG 59.717 37.037 0.00 0.00 0.00 3.53
2606 5344 8.213518 AGACACACTGCATAATACATTTTAGG 57.786 34.615 0.00 0.00 0.00 2.69
2607 5345 8.338259 GGAGACACACTGCATAATACATTTTAG 58.662 37.037 0.00 0.00 36.93 1.85
2608 5346 7.011016 CGGAGACACACTGCATAATACATTTTA 59.989 37.037 0.00 0.00 36.75 1.52
2611 5349 4.811024 CGGAGACACACTGCATAATACATT 59.189 41.667 0.00 0.00 36.75 2.71
2613 5351 3.430236 CCGGAGACACACTGCATAATACA 60.430 47.826 0.00 0.00 36.75 2.29
2617 5355 0.391130 GCCGGAGACACACTGCATAA 60.391 55.000 5.05 0.00 36.75 1.90
2618 5356 1.218047 GCCGGAGACACACTGCATA 59.782 57.895 5.05 0.00 36.75 3.14
2619 5357 2.046892 GCCGGAGACACACTGCAT 60.047 61.111 5.05 0.00 36.75 3.96
2620 5358 4.662961 CGCCGGAGACACACTGCA 62.663 66.667 5.05 0.00 36.75 4.41
2625 5363 2.362503 AGATCCGCCGGAGACACA 60.363 61.111 13.12 0.00 34.05 3.72
2637 5415 1.556564 TTTCGAATCGTGCGAGATCC 58.443 50.000 1.52 0.00 39.14 3.36
2645 5423 3.247648 AGACAACCACTTTTCGAATCGTG 59.752 43.478 16.21 16.21 0.00 4.35
2647 5425 4.468095 AAGACAACCACTTTTCGAATCG 57.532 40.909 0.00 0.00 0.00 3.34
2648 5426 5.816919 TCAAAGACAACCACTTTTCGAATC 58.183 37.500 0.00 0.00 35.74 2.52
2649 5427 5.828299 TCAAAGACAACCACTTTTCGAAT 57.172 34.783 0.00 0.00 35.74 3.34
2652 5430 4.920376 ACATCAAAGACAACCACTTTTCG 58.080 39.130 0.00 0.00 35.74 3.46
2654 5432 6.549364 TGGATACATCAAAGACAACCACTTTT 59.451 34.615 0.00 0.00 46.17 2.27
2655 5433 6.068010 TGGATACATCAAAGACAACCACTTT 58.932 36.000 0.00 0.00 46.17 2.66
2656 5434 5.630121 TGGATACATCAAAGACAACCACTT 58.370 37.500 0.00 0.00 46.17 3.16
2673 5451 7.924103 ACAAAGACGAACAAAAATTGGATAC 57.076 32.000 0.00 0.00 34.12 2.24
2674 5452 8.191446 TGAACAAAGACGAACAAAAATTGGATA 58.809 29.630 0.00 0.00 34.12 2.59
2677 5455 6.639671 TGAACAAAGACGAACAAAAATTGG 57.360 33.333 0.00 0.00 34.12 3.16
2678 5456 7.631750 CACATGAACAAAGACGAACAAAAATTG 59.368 33.333 0.00 0.00 0.00 2.32
2680 5458 6.811170 ACACATGAACAAAGACGAACAAAAAT 59.189 30.769 0.00 0.00 0.00 1.82
2681 5459 6.153067 ACACATGAACAAAGACGAACAAAAA 58.847 32.000 0.00 0.00 0.00 1.94
2682 5460 5.704888 ACACATGAACAAAGACGAACAAAA 58.295 33.333 0.00 0.00 0.00 2.44
2683 5461 5.123186 AGACACATGAACAAAGACGAACAAA 59.877 36.000 0.00 0.00 0.00 2.83
2684 5462 4.634004 AGACACATGAACAAAGACGAACAA 59.366 37.500 0.00 0.00 0.00 2.83
2685 5463 4.188462 AGACACATGAACAAAGACGAACA 58.812 39.130 0.00 0.00 0.00 3.18
2686 5464 4.795970 AGACACATGAACAAAGACGAAC 57.204 40.909 0.00 0.00 0.00 3.95
2688 5466 4.438148 TCAAGACACATGAACAAAGACGA 58.562 39.130 0.00 0.00 0.00 4.20
2689 5467 4.794248 TCAAGACACATGAACAAAGACG 57.206 40.909 0.00 0.00 0.00 4.18
2690 5468 6.124088 ACTTCAAGACACATGAACAAAGAC 57.876 37.500 0.00 0.00 33.47 3.01
2692 5470 5.745294 CCAACTTCAAGACACATGAACAAAG 59.255 40.000 0.00 0.00 33.47 2.77
2693 5471 5.417266 TCCAACTTCAAGACACATGAACAAA 59.583 36.000 0.00 0.00 33.47 2.83
2694 5472 4.946772 TCCAACTTCAAGACACATGAACAA 59.053 37.500 0.00 0.00 33.47 2.83
2695 5473 4.522114 TCCAACTTCAAGACACATGAACA 58.478 39.130 0.00 0.00 33.47 3.18
2696 5474 5.335191 GGATCCAACTTCAAGACACATGAAC 60.335 44.000 6.95 0.00 33.47 3.18
2697 5475 4.761739 GGATCCAACTTCAAGACACATGAA 59.238 41.667 6.95 0.00 35.60 2.57
2698 5476 4.326826 GGATCCAACTTCAAGACACATGA 58.673 43.478 6.95 0.00 0.00 3.07
2699 5477 3.441572 GGGATCCAACTTCAAGACACATG 59.558 47.826 15.23 0.00 0.00 3.21
2702 5480 3.425162 AGGGATCCAACTTCAAGACAC 57.575 47.619 15.23 0.00 0.00 3.67
2704 5482 3.003480 CGAAGGGATCCAACTTCAAGAC 58.997 50.000 22.91 4.68 42.40 3.01
2705 5483 2.903784 TCGAAGGGATCCAACTTCAAGA 59.096 45.455 22.91 14.04 42.40 3.02
2706 5484 3.334583 TCGAAGGGATCCAACTTCAAG 57.665 47.619 22.91 12.50 42.40 3.02
2707 5485 3.873910 GATCGAAGGGATCCAACTTCAA 58.126 45.455 22.91 11.25 44.86 2.69
2708 5486 3.543680 GATCGAAGGGATCCAACTTCA 57.456 47.619 22.91 14.17 44.86 3.02
2717 5495 7.394816 TGAAAAGAAACTTAGATCGAAGGGAT 58.605 34.615 18.31 5.36 38.35 3.85
2718 5496 6.765403 TGAAAAGAAACTTAGATCGAAGGGA 58.235 36.000 18.31 0.00 0.00 4.20
2719 5497 7.464710 CGATGAAAAGAAACTTAGATCGAAGGG 60.465 40.741 18.31 0.00 34.75 3.95
2721 5499 7.394872 CCGATGAAAAGAAACTTAGATCGAAG 58.605 38.462 13.39 13.39 34.75 3.79
2722 5500 6.183360 GCCGATGAAAAGAAACTTAGATCGAA 60.183 38.462 0.00 0.00 34.75 3.71
2723 5501 5.291128 GCCGATGAAAAGAAACTTAGATCGA 59.709 40.000 0.00 0.00 34.75 3.59
2724 5502 5.493735 GCCGATGAAAAGAAACTTAGATCG 58.506 41.667 0.00 0.00 33.06 3.69
2725 5503 5.291128 TCGCCGATGAAAAGAAACTTAGATC 59.709 40.000 0.00 0.00 0.00 2.75
2726 5504 5.175859 TCGCCGATGAAAAGAAACTTAGAT 58.824 37.500 0.00 0.00 0.00 1.98
2729 5507 4.562082 TCTCGCCGATGAAAAGAAACTTA 58.438 39.130 0.00 0.00 0.00 2.24
2734 5512 3.190079 CATCTCTCGCCGATGAAAAGAA 58.810 45.455 0.00 0.00 40.47 2.52
2737 5515 2.672961 ACATCTCTCGCCGATGAAAA 57.327 45.000 13.03 0.00 40.47 2.29
2739 5517 2.298610 ACTACATCTCTCGCCGATGAA 58.701 47.619 13.03 0.00 40.47 2.57
2740 5518 1.968704 ACTACATCTCTCGCCGATGA 58.031 50.000 13.03 0.00 40.47 2.92
2741 5519 2.292016 AGAACTACATCTCTCGCCGATG 59.708 50.000 0.00 6.80 42.97 3.84
2743 5521 1.671328 CAGAACTACATCTCTCGCCGA 59.329 52.381 0.00 0.00 0.00 5.54
2745 5523 3.637432 CATCAGAACTACATCTCTCGCC 58.363 50.000 0.00 0.00 0.00 5.54
2747 5525 4.298744 TGCATCAGAACTACATCTCTCG 57.701 45.455 0.00 0.00 0.00 4.04
2749 5527 5.104610 ACCAATGCATCAGAACTACATCTCT 60.105 40.000 0.00 0.00 0.00 3.10
2751 5529 5.108187 ACCAATGCATCAGAACTACATCT 57.892 39.130 0.00 0.00 0.00 2.90
2753 5531 4.202441 GGACCAATGCATCAGAACTACAT 58.798 43.478 0.00 0.00 0.00 2.29
2756 5534 2.575735 TGGGACCAATGCATCAGAACTA 59.424 45.455 0.00 0.00 0.00 2.24
2757 5535 1.355381 TGGGACCAATGCATCAGAACT 59.645 47.619 0.00 0.00 0.00 3.01
2759 5537 2.380941 CATGGGACCAATGCATCAGAA 58.619 47.619 0.00 0.00 0.00 3.02
2761 5539 1.037493 CCATGGGACCAATGCATCAG 58.963 55.000 2.85 0.00 0.00 2.90
2762 5540 0.397394 CCCATGGGACCAATGCATCA 60.397 55.000 28.27 0.00 37.50 3.07
2763 5541 2.433217 CCCATGGGACCAATGCATC 58.567 57.895 28.27 0.00 37.50 3.91
2764 5542 4.711799 CCCATGGGACCAATGCAT 57.288 55.556 28.27 0.00 37.50 3.96
2775 5553 0.818040 GCCGTACTAAAGCCCCATGG 60.818 60.000 4.14 4.14 0.00 3.66
2776 5554 1.157870 CGCCGTACTAAAGCCCCATG 61.158 60.000 0.00 0.00 0.00 3.66
2777 5555 1.145377 CGCCGTACTAAAGCCCCAT 59.855 57.895 0.00 0.00 0.00 4.00
2778 5556 1.332144 ATCGCCGTACTAAAGCCCCA 61.332 55.000 0.00 0.00 0.00 4.96
2779 5557 0.599466 GATCGCCGTACTAAAGCCCC 60.599 60.000 0.00 0.00 0.00 5.80
2780 5558 0.599466 GGATCGCCGTACTAAAGCCC 60.599 60.000 0.00 0.00 0.00 5.19
2781 5559 0.103572 TGGATCGCCGTACTAAAGCC 59.896 55.000 0.00 0.00 36.79 4.35
2782 5560 1.066605 TCTGGATCGCCGTACTAAAGC 59.933 52.381 0.00 0.00 36.79 3.51
2783 5561 2.358267 AGTCTGGATCGCCGTACTAAAG 59.642 50.000 0.00 0.00 36.79 1.85
2785 5563 1.674441 CAGTCTGGATCGCCGTACTAA 59.326 52.381 0.00 0.00 36.79 2.24
2786 5564 1.306148 CAGTCTGGATCGCCGTACTA 58.694 55.000 0.00 0.00 36.79 1.82
2787 5565 0.680280 ACAGTCTGGATCGCCGTACT 60.680 55.000 4.53 0.00 36.79 2.73
2788 5566 0.248539 GACAGTCTGGATCGCCGTAC 60.249 60.000 4.53 0.00 36.79 3.67
2789 5567 0.393944 AGACAGTCTGGATCGCCGTA 60.394 55.000 0.91 0.00 36.79 4.02
2790 5568 0.393944 TAGACAGTCTGGATCGCCGT 60.394 55.000 13.84 0.00 36.79 5.68
2792 5570 1.394618 AGTAGACAGTCTGGATCGCC 58.605 55.000 13.84 0.00 0.00 5.54
2793 5571 2.943690 TGTAGTAGACAGTCTGGATCGC 59.056 50.000 13.84 0.00 32.86 4.58
2795 5573 5.899120 TGTTGTAGTAGACAGTCTGGATC 57.101 43.478 13.84 2.51 39.88 3.36
2796 5574 5.775701 ACTTGTTGTAGTAGACAGTCTGGAT 59.224 40.000 13.84 1.52 39.88 3.41
2797 5575 5.138276 ACTTGTTGTAGTAGACAGTCTGGA 58.862 41.667 13.84 0.00 39.88 3.86
2799 5577 7.062371 GCATAACTTGTTGTAGTAGACAGTCTG 59.938 40.741 13.84 0.00 39.88 3.51
2800 5578 7.091443 GCATAACTTGTTGTAGTAGACAGTCT 58.909 38.462 8.50 8.50 39.88 3.24
2801 5579 6.310711 GGCATAACTTGTTGTAGTAGACAGTC 59.689 42.308 0.00 0.00 39.88 3.51
2803 5581 6.311445 CAGGCATAACTTGTTGTAGTAGACAG 59.689 42.308 0.00 0.00 39.88 3.51
2804 5582 6.014925 TCAGGCATAACTTGTTGTAGTAGACA 60.015 38.462 0.00 0.00 35.78 3.41
2805 5583 6.310711 GTCAGGCATAACTTGTTGTAGTAGAC 59.689 42.308 0.00 0.00 0.00 2.59
2807 5585 6.398918 AGTCAGGCATAACTTGTTGTAGTAG 58.601 40.000 0.00 0.00 0.00 2.57
2809 5587 5.012148 AGAGTCAGGCATAACTTGTTGTAGT 59.988 40.000 0.00 0.00 0.00 2.73
2811 5589 5.237815 CAGAGTCAGGCATAACTTGTTGTA 58.762 41.667 0.00 0.00 0.00 2.41
2812 5590 4.067896 CAGAGTCAGGCATAACTTGTTGT 58.932 43.478 0.00 0.00 0.00 3.32
2814 5592 3.679389 CCAGAGTCAGGCATAACTTGTT 58.321 45.455 0.00 0.00 0.00 2.83
2815 5593 3.340814 CCAGAGTCAGGCATAACTTGT 57.659 47.619 0.00 0.00 0.00 3.16
2826 5604 2.422231 CCTCCCTCGCCAGAGTCAG 61.422 68.421 0.00 0.00 42.86 3.51
2827 5605 2.363018 CCTCCCTCGCCAGAGTCA 60.363 66.667 0.00 0.00 42.86 3.41
2828 5606 3.151022 CCCTCCCTCGCCAGAGTC 61.151 72.222 0.00 0.00 42.86 3.36
2829 5607 4.787280 CCCCTCCCTCGCCAGAGT 62.787 72.222 0.00 0.00 42.86 3.24
2830 5608 4.787280 ACCCCTCCCTCGCCAGAG 62.787 72.222 0.00 0.00 43.98 3.35
2834 5612 1.128188 ATTATCACCCCTCCCTCGCC 61.128 60.000 0.00 0.00 0.00 5.54
2835 5613 0.035458 CATTATCACCCCTCCCTCGC 59.965 60.000 0.00 0.00 0.00 5.03
2837 5615 0.402121 GCCATTATCACCCCTCCCTC 59.598 60.000 0.00 0.00 0.00 4.30
2838 5616 0.328450 TGCCATTATCACCCCTCCCT 60.328 55.000 0.00 0.00 0.00 4.20
2839 5617 0.111253 CTGCCATTATCACCCCTCCC 59.889 60.000 0.00 0.00 0.00 4.30
2840 5618 0.538287 GCTGCCATTATCACCCCTCC 60.538 60.000 0.00 0.00 0.00 4.30
2842 5620 1.149174 CGCTGCCATTATCACCCCT 59.851 57.895 0.00 0.00 0.00 4.79
2843 5621 2.555547 GCGCTGCCATTATCACCCC 61.556 63.158 0.00 0.00 0.00 4.95
2845 5623 2.633657 CGCGCTGCCATTATCACC 59.366 61.111 5.56 0.00 0.00 4.02
2847 5625 3.639008 CGCGCGCTGCCATTATCA 61.639 61.111 30.48 0.00 42.08 2.15
2848 5626 3.168237 AACGCGCGCTGCCATTATC 62.168 57.895 32.58 0.00 42.08 1.75
2849 5627 3.168237 GAACGCGCGCTGCCATTAT 62.168 57.895 32.58 3.21 42.08 1.28
2850 5628 3.860125 GAACGCGCGCTGCCATTA 61.860 61.111 32.58 0.00 42.08 1.90
2860 5638 4.135493 GAAGTGAGCCGAACGCGC 62.135 66.667 5.73 0.00 44.76 6.86
2861 5639 1.626654 ATTGAAGTGAGCCGAACGCG 61.627 55.000 3.53 3.53 44.76 6.01
2873 6414 3.199508 AGAGTCAGGCATAGCATTGAAGT 59.800 43.478 0.00 0.00 0.00 3.01
2874 6415 3.560481 CAGAGTCAGGCATAGCATTGAAG 59.440 47.826 0.00 0.00 0.00 3.02
2876 6417 2.158856 CCAGAGTCAGGCATAGCATTGA 60.159 50.000 0.00 0.00 0.00 2.57
2877 6418 2.219458 CCAGAGTCAGGCATAGCATTG 58.781 52.381 0.00 0.00 0.00 2.82
2878 6419 2.634815 CCAGAGTCAGGCATAGCATT 57.365 50.000 0.00 0.00 0.00 3.56
2887 6428 2.363018 TCCCTCGCCAGAGTCAGG 60.363 66.667 0.00 0.00 42.86 3.86
2888 6429 2.422231 CCTCCCTCGCCAGAGTCAG 61.422 68.421 0.00 0.00 42.86 3.51
2890 6431 3.151022 CCCTCCCTCGCCAGAGTC 61.151 72.222 0.00 0.00 42.86 3.36
2891 6432 4.787280 CCCCTCCCTCGCCAGAGT 62.787 72.222 0.00 0.00 42.86 3.24
2892 6433 4.787280 ACCCCTCCCTCGCCAGAG 62.787 72.222 0.00 0.00 43.98 3.35
2894 6435 2.946988 TATCACCCCTCCCTCGCCAG 62.947 65.000 0.00 0.00 0.00 4.85
2895 6436 2.539277 TTATCACCCCTCCCTCGCCA 62.539 60.000 0.00 0.00 0.00 5.69
2896 6437 1.128188 ATTATCACCCCTCCCTCGCC 61.128 60.000 0.00 0.00 0.00 5.54
2897 6438 0.035458 CATTATCACCCCTCCCTCGC 59.965 60.000 0.00 0.00 0.00 5.03
2899 6440 0.402121 GCCATTATCACCCCTCCCTC 59.598 60.000 0.00 0.00 0.00 4.30
2901 6442 0.111253 CTGCCATTATCACCCCTCCC 59.889 60.000 0.00 0.00 0.00 4.30
2902 6443 0.538287 GCTGCCATTATCACCCCTCC 60.538 60.000 0.00 0.00 0.00 4.30
2904 6445 1.149174 CGCTGCCATTATCACCCCT 59.851 57.895 0.00 0.00 0.00 4.79
2905 6446 2.555547 GCGCTGCCATTATCACCCC 61.556 63.158 0.00 0.00 0.00 4.95
2906 6447 2.896801 CGCGCTGCCATTATCACCC 61.897 63.158 5.56 0.00 0.00 4.61
2907 6448 2.633657 CGCGCTGCCATTATCACC 59.366 61.111 5.56 0.00 0.00 4.02
2908 6449 2.051882 GCGCGCTGCCATTATCAC 60.052 61.111 26.67 0.00 37.76 3.06
2909 6450 3.639008 CGCGCGCTGCCATTATCA 61.639 61.111 30.48 0.00 42.08 2.15
2911 6452 3.168237 GAACGCGCGCTGCCATTAT 62.168 57.895 32.58 3.21 42.08 1.28
2912 6453 3.860125 GAACGCGCGCTGCCATTA 61.860 61.111 32.58 0.00 42.08 1.90
2923 6464 1.626654 ATTGAAGTGAGCCGAACGCG 61.627 55.000 3.53 3.53 44.76 6.01
2924 6465 0.179215 CATTGAAGTGAGCCGAACGC 60.179 55.000 0.00 0.00 37.98 4.84
2926 6467 1.160137 AGCATTGAAGTGAGCCGAAC 58.840 50.000 0.00 0.00 0.00 3.95
2927 6468 2.760634 TAGCATTGAAGTGAGCCGAA 57.239 45.000 0.00 0.00 0.00 4.30
2929 6470 1.003116 GCATAGCATTGAAGTGAGCCG 60.003 52.381 0.00 0.00 0.00 5.52
2930 6471 1.336125 GGCATAGCATTGAAGTGAGCC 59.664 52.381 0.00 0.00 0.00 4.70
2931 6472 2.033049 CAGGCATAGCATTGAAGTGAGC 59.967 50.000 0.00 0.00 0.00 4.26
2932 6473 3.311871 GTCAGGCATAGCATTGAAGTGAG 59.688 47.826 0.00 0.00 0.00 3.51
2933 6474 3.054875 AGTCAGGCATAGCATTGAAGTGA 60.055 43.478 0.00 0.00 0.00 3.41
2934 6475 3.276857 AGTCAGGCATAGCATTGAAGTG 58.723 45.455 0.00 0.00 0.00 3.16
2935 6476 3.199508 AGAGTCAGGCATAGCATTGAAGT 59.800 43.478 0.00 0.00 0.00 3.01
2936 6477 3.560481 CAGAGTCAGGCATAGCATTGAAG 59.440 47.826 0.00 0.00 0.00 3.02
2937 6478 3.538591 CAGAGTCAGGCATAGCATTGAA 58.461 45.455 0.00 0.00 0.00 2.69
2938 6479 2.158856 CCAGAGTCAGGCATAGCATTGA 60.159 50.000 0.00 0.00 0.00 2.57
2939 6480 2.219458 CCAGAGTCAGGCATAGCATTG 58.781 52.381 0.00 0.00 0.00 2.82
2949 6490 2.363018 TCCCTCGCCAGAGTCAGG 60.363 66.667 0.00 0.00 42.86 3.86
2950 6491 2.422231 CCTCCCTCGCCAGAGTCAG 61.422 68.421 0.00 0.00 42.86 3.51
2952 6493 3.151022 CCCTCCCTCGCCAGAGTC 61.151 72.222 0.00 0.00 42.86 3.36
2953 6494 4.787280 CCCCTCCCTCGCCAGAGT 62.787 72.222 0.00 0.00 42.86 3.24
2954 6495 4.787280 ACCCCTCCCTCGCCAGAG 62.787 72.222 0.00 0.00 43.98 3.35
2956 6497 2.946988 TATCACCCCTCCCTCGCCAG 62.947 65.000 0.00 0.00 0.00 4.85
2958 6499 1.128188 ATTATCACCCCTCCCTCGCC 61.128 60.000 0.00 0.00 0.00 5.54
2959 6500 0.035458 CATTATCACCCCTCCCTCGC 59.965 60.000 0.00 0.00 0.00 5.03
2961 6502 0.402121 GCCATTATCACCCCTCCCTC 59.598 60.000 0.00 0.00 0.00 4.30
2963 6504 0.111253 CTGCCATTATCACCCCTCCC 59.889 60.000 0.00 0.00 0.00 4.30
2964 6505 0.538287 GCTGCCATTATCACCCCTCC 60.538 60.000 0.00 0.00 0.00 4.30
2965 6506 0.886490 CGCTGCCATTATCACCCCTC 60.886 60.000 0.00 0.00 0.00 4.30
2967 6508 2.555547 GCGCTGCCATTATCACCCC 61.556 63.158 0.00 0.00 0.00 4.95
2968 6509 2.896801 CGCGCTGCCATTATCACCC 61.897 63.158 5.56 0.00 0.00 4.61
2969 6510 2.633657 CGCGCTGCCATTATCACC 59.366 61.111 5.56 0.00 0.00 4.02
2970 6511 2.051882 GCGCGCTGCCATTATCAC 60.052 61.111 26.67 0.00 37.76 3.06
2972 6513 3.168237 AACGCGCGCTGCCATTATC 62.168 57.895 32.58 0.00 42.08 1.75
2973 6514 3.168237 GAACGCGCGCTGCCATTAT 62.168 57.895 32.58 3.21 42.08 1.28
2974 6515 3.860125 GAACGCGCGCTGCCATTA 61.860 61.111 32.58 0.00 42.08 1.90
2985 6526 1.626654 ATTGAAGTGAGCCGAACGCG 61.627 55.000 3.53 3.53 44.76 6.01
2986 6527 0.179215 CATTGAAGTGAGCCGAACGC 60.179 55.000 0.00 0.00 37.98 4.84
2987 6528 0.179215 GCATTGAAGTGAGCCGAACG 60.179 55.000 0.00 0.00 0.00 3.95
2988 6529 1.160137 AGCATTGAAGTGAGCCGAAC 58.840 50.000 0.00 0.00 0.00 3.95
2989 6530 1.896220 AAGCATTGAAGTGAGCCGAA 58.104 45.000 0.00 0.00 0.00 4.30
2990 6531 3.631453 AAGCATTGAAGTGAGCCGA 57.369 47.368 0.00 0.00 0.00 5.54
3002 6543 5.124457 CCATCTAGCAACAACTACAAGCATT 59.876 40.000 0.00 0.00 0.00 3.56
3003 6544 4.637534 CCATCTAGCAACAACTACAAGCAT 59.362 41.667 0.00 0.00 0.00 3.79
3005 6546 4.003648 ACCATCTAGCAACAACTACAAGC 58.996 43.478 0.00 0.00 0.00 4.01
3006 6547 5.482908 AGACCATCTAGCAACAACTACAAG 58.517 41.667 0.00 0.00 0.00 3.16
3007 6548 5.483685 AGACCATCTAGCAACAACTACAA 57.516 39.130 0.00 0.00 0.00 2.41
3008 6549 6.791867 ATAGACCATCTAGCAACAACTACA 57.208 37.500 0.00 0.00 31.67 2.74
3009 6550 9.765795 ATTTATAGACCATCTAGCAACAACTAC 57.234 33.333 0.00 0.00 31.67 2.73
3013 6554 9.725019 CCATATTTATAGACCATCTAGCAACAA 57.275 33.333 0.00 0.00 31.67 2.83
3014 6555 9.100197 TCCATATTTATAGACCATCTAGCAACA 57.900 33.333 0.00 0.00 31.67 3.33
3017 6558 9.271921 ACATCCATATTTATAGACCATCTAGCA 57.728 33.333 0.00 0.00 31.67 3.49
3037 6578 8.233868 CGAACACAAGAAATAACAATACATCCA 58.766 33.333 0.00 0.00 0.00 3.41
3038 6579 7.218204 GCGAACACAAGAAATAACAATACATCC 59.782 37.037 0.00 0.00 0.00 3.51
3039 6580 7.962918 AGCGAACACAAGAAATAACAATACATC 59.037 33.333 0.00 0.00 0.00 3.06
3040 6581 7.750458 CAGCGAACACAAGAAATAACAATACAT 59.250 33.333 0.00 0.00 0.00 2.29
3041 6582 7.075121 CAGCGAACACAAGAAATAACAATACA 58.925 34.615 0.00 0.00 0.00 2.29
3042 6583 7.075741 ACAGCGAACACAAGAAATAACAATAC 58.924 34.615 0.00 0.00 0.00 1.89
3043 6584 7.197071 ACAGCGAACACAAGAAATAACAATA 57.803 32.000 0.00 0.00 0.00 1.90
3044 6585 6.072112 ACAGCGAACACAAGAAATAACAAT 57.928 33.333 0.00 0.00 0.00 2.71
3045 6586 5.493133 ACAGCGAACACAAGAAATAACAA 57.507 34.783 0.00 0.00 0.00 2.83
3046 6587 6.400621 CGATACAGCGAACACAAGAAATAACA 60.401 38.462 0.00 0.00 0.00 2.41
3047 6588 5.952064 CGATACAGCGAACACAAGAAATAAC 59.048 40.000 0.00 0.00 0.00 1.89
3048 6589 5.865013 TCGATACAGCGAACACAAGAAATAA 59.135 36.000 0.00 0.00 37.35 1.40
3049 6590 5.404096 TCGATACAGCGAACACAAGAAATA 58.596 37.500 0.00 0.00 37.35 1.40
3050 6591 4.242475 TCGATACAGCGAACACAAGAAAT 58.758 39.130 0.00 0.00 37.35 2.17
3051 6592 3.644823 TCGATACAGCGAACACAAGAAA 58.355 40.909 0.00 0.00 37.35 2.52
3052 6593 3.291809 TCGATACAGCGAACACAAGAA 57.708 42.857 0.00 0.00 37.35 2.52
3053 6594 3.057806 TCTTCGATACAGCGAACACAAGA 60.058 43.478 0.00 0.00 44.43 3.02
3054 6595 3.242518 TCTTCGATACAGCGAACACAAG 58.757 45.455 0.00 0.00 44.43 3.16
3055 6596 3.291809 TCTTCGATACAGCGAACACAA 57.708 42.857 0.00 0.00 44.43 3.33
3056 6597 3.119637 TCATCTTCGATACAGCGAACACA 60.120 43.478 0.00 0.00 44.43 3.72
3057 6598 3.435566 TCATCTTCGATACAGCGAACAC 58.564 45.455 0.00 0.00 44.43 3.32
3058 6599 3.775661 TCATCTTCGATACAGCGAACA 57.224 42.857 0.00 0.00 44.43 3.18
3059 6600 6.749216 TTATTCATCTTCGATACAGCGAAC 57.251 37.500 0.00 0.00 44.43 3.95
3060 6601 7.946655 ATTTATTCATCTTCGATACAGCGAA 57.053 32.000 2.09 2.09 46.77 4.70
3061 6602 7.651704 TCAATTTATTCATCTTCGATACAGCGA 59.348 33.333 0.00 0.00 38.72 4.93
3062 6603 7.787084 TCAATTTATTCATCTTCGATACAGCG 58.213 34.615 0.00 0.00 0.00 5.18
3063 6604 9.935682 TTTCAATTTATTCATCTTCGATACAGC 57.064 29.630 0.00 0.00 0.00 4.40
3113 6654 8.657712 GGACACTAAATTATAAGGACACCCTAT 58.342 37.037 0.00 0.00 43.48 2.57
3114 6655 7.071572 GGGACACTAAATTATAAGGACACCCTA 59.928 40.741 0.00 0.00 43.48 3.53
3116 6657 6.060136 GGGACACTAAATTATAAGGACACCC 58.940 44.000 0.00 0.00 0.00 4.61
3117 6658 6.060136 GGGGACACTAAATTATAAGGACACC 58.940 44.000 0.00 0.00 0.00 4.16
3118 6659 5.756833 CGGGGACACTAAATTATAAGGACAC 59.243 44.000 0.00 0.00 0.00 3.67
3119 6660 5.662208 TCGGGGACACTAAATTATAAGGACA 59.338 40.000 0.00 0.00 0.00 4.02
3120 6661 6.165700 TCGGGGACACTAAATTATAAGGAC 57.834 41.667 0.00 0.00 0.00 3.85
3121 6662 7.309377 CGTATCGGGGACACTAAATTATAAGGA 60.309 40.741 0.00 0.00 0.00 3.36
3122 6663 6.810182 CGTATCGGGGACACTAAATTATAAGG 59.190 42.308 0.00 0.00 0.00 2.69
3123 6664 6.309737 GCGTATCGGGGACACTAAATTATAAG 59.690 42.308 0.00 0.00 0.00 1.73
3124 6665 6.158598 GCGTATCGGGGACACTAAATTATAA 58.841 40.000 0.00 0.00 0.00 0.98
3125 6666 5.336690 GGCGTATCGGGGACACTAAATTATA 60.337 44.000 0.00 0.00 0.00 0.98
3126 6667 4.562143 GGCGTATCGGGGACACTAAATTAT 60.562 45.833 0.00 0.00 0.00 1.28
3127 6668 3.243839 GGCGTATCGGGGACACTAAATTA 60.244 47.826 0.00 0.00 0.00 1.40
3128 6669 2.484241 GGCGTATCGGGGACACTAAATT 60.484 50.000 0.00 0.00 0.00 1.82
3129 6670 1.069668 GGCGTATCGGGGACACTAAAT 59.930 52.381 0.00 0.00 0.00 1.40
3130 6671 0.461135 GGCGTATCGGGGACACTAAA 59.539 55.000 0.00 0.00 0.00 1.85
3131 6672 1.394266 GGGCGTATCGGGGACACTAA 61.394 60.000 0.00 0.00 0.00 2.24
3132 6673 1.829533 GGGCGTATCGGGGACACTA 60.830 63.158 0.00 0.00 0.00 2.74
3133 6674 3.152400 GGGCGTATCGGGGACACT 61.152 66.667 0.00 0.00 0.00 3.55
3134 6675 3.148031 GAGGGCGTATCGGGGACAC 62.148 68.421 0.00 0.00 0.00 3.67
3135 6676 2.836360 GAGGGCGTATCGGGGACA 60.836 66.667 0.00 0.00 0.00 4.02
3136 6677 3.613689 GGAGGGCGTATCGGGGAC 61.614 72.222 0.00 0.00 0.00 4.46
3137 6678 3.804638 GAGGAGGGCGTATCGGGGA 62.805 68.421 0.00 0.00 0.00 4.81
3147 6688 2.498644 AAGCAGTTTTAGAGGAGGGC 57.501 50.000 0.00 0.00 0.00 5.19
3148 6689 4.657013 AGAAAAGCAGTTTTAGAGGAGGG 58.343 43.478 0.00 0.00 35.94 4.30
3150 6691 8.785329 ATAGAAGAAAAGCAGTTTTAGAGGAG 57.215 34.615 0.00 0.00 35.94 3.69
3152 6693 9.003658 TGAATAGAAGAAAAGCAGTTTTAGAGG 57.996 33.333 0.00 0.00 35.94 3.69
3161 6702 9.500864 GCTTAAAGATGAATAGAAGAAAAGCAG 57.499 33.333 0.00 0.00 35.66 4.24
3162 6703 9.236006 AGCTTAAAGATGAATAGAAGAAAAGCA 57.764 29.630 0.00 0.00 37.50 3.91
3177 6718 9.440773 TGCCATCTATATGTTAGCTTAAAGATG 57.559 33.333 0.00 2.00 39.05 2.90
3182 6723 9.330063 GCATATGCCATCTATATGTTAGCTTAA 57.670 33.333 17.26 0.00 39.54 1.85
3190 6731 7.376335 AGAGATGCATATGCCATCTATATGT 57.624 36.000 27.75 14.00 39.54 2.29
3248 6884 9.630098 AAATGATGAATTATGTGTGTCAGAAAC 57.370 29.630 0.00 0.00 30.90 2.78
3252 6888 9.628746 TTTGAAATGATGAATTATGTGTGTCAG 57.371 29.630 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.