Multiple sequence alignment - TraesCS3A01G498800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G498800 chr3A 100.000 2576 0 0 1 2576 724299564 724302139 0.000000e+00 4758.0
1 TraesCS3A01G498800 chrUn 95.238 735 30 5 1 732 74637465 74638197 0.000000e+00 1158.0
2 TraesCS3A01G498800 chrUn 95.238 735 30 5 1 732 347205506 347206238 0.000000e+00 1158.0
3 TraesCS3A01G498800 chrUn 95.122 738 31 5 1 735 437620370 437619635 0.000000e+00 1158.0
4 TraesCS3A01G498800 chrUn 95.102 735 31 5 1 732 301781782 301782514 0.000000e+00 1153.0
5 TraesCS3A01G498800 chr6A 95.238 735 30 5 1 732 578209045 578209777 0.000000e+00 1158.0
6 TraesCS3A01G498800 chr6A 95.102 735 31 5 1 732 578195834 578196566 0.000000e+00 1153.0
7 TraesCS3A01G498800 chr6A 92.335 561 34 5 2016 2576 10983955 10983404 0.000000e+00 789.0
8 TraesCS3A01G498800 chr2A 95.304 724 31 3 1 722 660262148 660262870 0.000000e+00 1146.0
9 TraesCS3A01G498800 chr2A 92.164 587 10 7 2011 2576 733696941 733697512 0.000000e+00 797.0
10 TraesCS3A01G498800 chr2A 85.434 611 62 20 746 1340 376076720 376076121 6.090000e-171 610.0
11 TraesCS3A01G498800 chr2A 83.065 496 42 14 1488 1948 376075994 376075506 1.840000e-111 412.0
12 TraesCS3A01G498800 chr1A 94.208 587 13 1 2011 2576 548460659 548461245 0.000000e+00 876.0
13 TraesCS3A01G498800 chr1A 89.527 592 37 11 2008 2576 560370551 560369962 0.000000e+00 726.0
14 TraesCS3A01G498800 chr6D 91.468 586 26 9 2014 2576 329887529 329886945 0.000000e+00 784.0
15 TraesCS3A01G498800 chr6D 97.368 38 0 1 393 429 144560788 144560751 2.140000e-06 63.9
16 TraesCS3A01G498800 chr2D 91.171 589 29 9 2011 2576 314052989 314052401 0.000000e+00 778.0
17 TraesCS3A01G498800 chr2D 84.943 611 60 21 749 1339 299888040 299887442 7.940000e-165 590.0
18 TraesCS3A01G498800 chr2D 81.905 420 35 14 1607 1992 299886928 299886516 1.490000e-82 316.0
19 TraesCS3A01G498800 chr7D 90.136 588 35 9 2011 2576 497569184 497569770 0.000000e+00 743.0
20 TraesCS3A01G498800 chr7D 95.263 380 18 0 2197 2576 20960259 20959880 1.020000e-168 603.0
21 TraesCS3A01G498800 chr7D 95.783 166 5 2 559 722 115253916 115254081 1.520000e-67 267.0
22 TraesCS3A01G498800 chr7B 90.119 587 37 8 2011 2576 610224139 610224725 0.000000e+00 743.0
23 TraesCS3A01G498800 chr7B 87.394 587 53 10 2010 2576 44303619 44303034 0.000000e+00 654.0
24 TraesCS3A01G498800 chr5A 89.983 589 35 4 2010 2576 43566767 43567353 0.000000e+00 739.0
25 TraesCS3A01G498800 chr5B 89.726 584 40 9 2013 2576 54552185 54551602 0.000000e+00 728.0
26 TraesCS3A01G498800 chr5B 89.251 521 33 10 2011 2508 23418875 23418355 4.680000e-177 630.0
27 TraesCS3A01G498800 chr5B 83.460 526 54 18 828 1340 689486987 689487492 2.340000e-125 459.0
28 TraesCS3A01G498800 chr5B 82.407 540 55 22 1475 1992 689487606 689488127 3.940000e-118 435.0
29 TraesCS3A01G498800 chr4B 89.365 583 42 9 2014 2576 536847426 536848008 0.000000e+00 715.0
30 TraesCS3A01G498800 chr1B 89.194 509 35 8 2088 2576 670797423 670796915 3.640000e-173 617.0
31 TraesCS3A01G498800 chr5D 86.450 524 51 14 828 1340 546365713 546366227 8.050000e-155 556.0
32 TraesCS3A01G498800 chr5D 87.021 339 29 9 1475 1806 546366341 546366671 4.050000e-98 368.0
33 TraesCS3A01G498800 chr2B 82.955 616 64 25 746 1340 371167514 371168109 3.800000e-143 518.0
34 TraesCS3A01G498800 chr2B 84.601 552 41 17 1475 1992 371168226 371168767 2.290000e-140 508.0
35 TraesCS3A01G498800 chr3D 95.706 163 4 3 562 722 380967961 380967800 2.540000e-65 259.0
36 TraesCS3A01G498800 chr7A 88.136 59 4 3 393 448 694057337 694057279 1.650000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G498800 chr3A 724299564 724302139 2575 False 4758 4758 100.0000 1 2576 1 chr3A.!!$F1 2575
1 TraesCS3A01G498800 chrUn 74637465 74638197 732 False 1158 1158 95.2380 1 732 1 chrUn.!!$F1 731
2 TraesCS3A01G498800 chrUn 347205506 347206238 732 False 1158 1158 95.2380 1 732 1 chrUn.!!$F3 731
3 TraesCS3A01G498800 chrUn 437619635 437620370 735 True 1158 1158 95.1220 1 735 1 chrUn.!!$R1 734
4 TraesCS3A01G498800 chrUn 301781782 301782514 732 False 1153 1153 95.1020 1 732 1 chrUn.!!$F2 731
5 TraesCS3A01G498800 chr6A 578209045 578209777 732 False 1158 1158 95.2380 1 732 1 chr6A.!!$F2 731
6 TraesCS3A01G498800 chr6A 578195834 578196566 732 False 1153 1153 95.1020 1 732 1 chr6A.!!$F1 731
7 TraesCS3A01G498800 chr6A 10983404 10983955 551 True 789 789 92.3350 2016 2576 1 chr6A.!!$R1 560
8 TraesCS3A01G498800 chr2A 660262148 660262870 722 False 1146 1146 95.3040 1 722 1 chr2A.!!$F1 721
9 TraesCS3A01G498800 chr2A 733696941 733697512 571 False 797 797 92.1640 2011 2576 1 chr2A.!!$F2 565
10 TraesCS3A01G498800 chr2A 376075506 376076720 1214 True 511 610 84.2495 746 1948 2 chr2A.!!$R1 1202
11 TraesCS3A01G498800 chr1A 548460659 548461245 586 False 876 876 94.2080 2011 2576 1 chr1A.!!$F1 565
12 TraesCS3A01G498800 chr1A 560369962 560370551 589 True 726 726 89.5270 2008 2576 1 chr1A.!!$R1 568
13 TraesCS3A01G498800 chr6D 329886945 329887529 584 True 784 784 91.4680 2014 2576 1 chr6D.!!$R2 562
14 TraesCS3A01G498800 chr2D 314052401 314052989 588 True 778 778 91.1710 2011 2576 1 chr2D.!!$R1 565
15 TraesCS3A01G498800 chr2D 299886516 299888040 1524 True 453 590 83.4240 749 1992 2 chr2D.!!$R2 1243
16 TraesCS3A01G498800 chr7D 497569184 497569770 586 False 743 743 90.1360 2011 2576 1 chr7D.!!$F2 565
17 TraesCS3A01G498800 chr7B 610224139 610224725 586 False 743 743 90.1190 2011 2576 1 chr7B.!!$F1 565
18 TraesCS3A01G498800 chr7B 44303034 44303619 585 True 654 654 87.3940 2010 2576 1 chr7B.!!$R1 566
19 TraesCS3A01G498800 chr5A 43566767 43567353 586 False 739 739 89.9830 2010 2576 1 chr5A.!!$F1 566
20 TraesCS3A01G498800 chr5B 54551602 54552185 583 True 728 728 89.7260 2013 2576 1 chr5B.!!$R2 563
21 TraesCS3A01G498800 chr5B 23418355 23418875 520 True 630 630 89.2510 2011 2508 1 chr5B.!!$R1 497
22 TraesCS3A01G498800 chr5B 689486987 689488127 1140 False 447 459 82.9335 828 1992 2 chr5B.!!$F1 1164
23 TraesCS3A01G498800 chr4B 536847426 536848008 582 False 715 715 89.3650 2014 2576 1 chr4B.!!$F1 562
24 TraesCS3A01G498800 chr1B 670796915 670797423 508 True 617 617 89.1940 2088 2576 1 chr1B.!!$R1 488
25 TraesCS3A01G498800 chr5D 546365713 546366671 958 False 462 556 86.7355 828 1806 2 chr5D.!!$F1 978
26 TraesCS3A01G498800 chr2B 371167514 371168767 1253 False 513 518 83.7780 746 1992 2 chr2B.!!$F1 1246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 812 0.036022 ACAAACTCTGAGAGGCCAGC 59.964 55.0 14.83 0.0 33.35 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 2233 1.752498 ACGTGGTGAATATGTAGCCGA 59.248 47.619 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.395657 CCTTTGTCCTCTGCTTTTCCTTTTT 60.396 40.000 0.00 0.00 0.00 1.94
139 140 3.614092 CAACTGGATGTGCTATTCCTGT 58.386 45.455 6.24 6.24 43.53 4.00
148 149 3.007074 TGTGCTATTCCTGTCGTTGGTTA 59.993 43.478 0.00 0.00 0.00 2.85
155 156 3.792401 TCCTGTCGTTGGTTATAGCATG 58.208 45.455 0.00 0.00 0.00 4.06
246 247 9.607988 TGTGTAATTCTTCTTCTTGTTTCAGTA 57.392 29.630 0.00 0.00 0.00 2.74
280 281 5.357032 ACAGAATTACCGTGAAATTCATCCC 59.643 40.000 0.00 0.00 42.98 3.85
293 294 2.380084 TCATCCCGTAGTTTCAGTGC 57.620 50.000 0.00 0.00 0.00 4.40
376 378 6.034044 GTGTAATTCTTCTCGTAGCTTCAGTG 59.966 42.308 0.00 0.00 0.00 3.66
466 468 9.836076 GTCTAATTGTAAAGTTTTTCGGCTATT 57.164 29.630 0.00 0.00 0.00 1.73
513 516 3.947834 CCATGATTCCAGTGTAAGTTCCC 59.052 47.826 0.00 0.00 0.00 3.97
662 665 7.801547 GACATACAGGTGTCATTTTCATTTG 57.198 36.000 2.40 0.00 46.04 2.32
666 669 6.594788 ACAGGTGTCATTTTCATTTGCTAT 57.405 33.333 0.00 0.00 0.00 2.97
726 729 4.327680 GTCAAATAGACAGTCCCTTGCTT 58.672 43.478 0.00 0.00 46.77 3.91
732 735 9.125026 CAAATAGACAGTCCCTTGCTTTATTAT 57.875 33.333 0.00 0.00 0.00 1.28
738 741 9.220767 GACAGTCCCTTGCTTTATTATTATAGG 57.779 37.037 0.00 0.00 0.00 2.57
739 742 8.945193 ACAGTCCCTTGCTTTATTATTATAGGA 58.055 33.333 0.00 0.00 0.00 2.94
740 743 9.793259 CAGTCCCTTGCTTTATTATTATAGGAA 57.207 33.333 0.00 0.00 0.00 3.36
764 767 2.762327 AGATTAGGCCGGACTTAAACGA 59.238 45.455 19.46 0.00 0.00 3.85
768 771 1.375013 GCCGGACTTAAACGAGCCA 60.375 57.895 5.05 0.00 0.00 4.75
770 773 1.076332 CCGGACTTAAACGAGCCAAG 58.924 55.000 0.00 0.00 0.00 3.61
797 800 1.592400 GGCGGGGCCTTAACAAACTC 61.592 60.000 0.84 0.00 46.69 3.01
798 801 0.608308 GCGGGGCCTTAACAAACTCT 60.608 55.000 0.84 0.00 0.00 3.24
799 802 1.165270 CGGGGCCTTAACAAACTCTG 58.835 55.000 0.84 0.00 0.00 3.35
800 803 1.271163 CGGGGCCTTAACAAACTCTGA 60.271 52.381 0.84 0.00 0.00 3.27
801 804 2.437413 GGGGCCTTAACAAACTCTGAG 58.563 52.381 0.84 2.45 0.00 3.35
803 806 3.339141 GGGCCTTAACAAACTCTGAGAG 58.661 50.000 12.44 8.15 35.52 3.20
804 807 3.339141 GGCCTTAACAAACTCTGAGAGG 58.661 50.000 14.83 6.81 33.35 3.69
805 808 2.744741 GCCTTAACAAACTCTGAGAGGC 59.255 50.000 14.83 13.04 39.14 4.70
807 810 3.244561 CCTTAACAAACTCTGAGAGGCCA 60.245 47.826 14.83 0.00 33.35 5.36
808 811 2.557920 AACAAACTCTGAGAGGCCAG 57.442 50.000 14.83 3.39 33.35 4.85
809 812 0.036022 ACAAACTCTGAGAGGCCAGC 59.964 55.000 14.83 0.00 33.35 4.85
810 813 0.324285 CAAACTCTGAGAGGCCAGCT 59.676 55.000 14.83 0.31 33.35 4.24
817 822 1.277557 CTGAGAGGCCAGCTACAAAGT 59.722 52.381 5.01 0.00 0.00 2.66
839 844 2.271173 GGCCCACTAAAGACCCCG 59.729 66.667 0.00 0.00 0.00 5.73
844 849 1.558233 CCACTAAAGACCCCGTCTCT 58.442 55.000 0.00 0.00 42.59 3.10
846 851 2.168496 CACTAAAGACCCCGTCTCTGA 58.832 52.381 0.00 0.00 42.59 3.27
851 856 1.000646 GACCCCGTCTCTGAGTCCT 60.001 63.158 4.32 0.00 0.00 3.85
859 864 3.283751 CGTCTCTGAGTCCTAGGACAAT 58.716 50.000 37.27 22.16 46.76 2.71
901 921 2.026445 CCGTCACCGTCACGAACA 59.974 61.111 0.00 0.00 39.75 3.18
904 924 0.868602 CGTCACCGTCACGAACACTT 60.869 55.000 0.00 0.00 39.75 3.16
930 950 1.214175 TCCTCCACAAAAACCAGAGCA 59.786 47.619 0.00 0.00 0.00 4.26
936 956 2.551912 AAAAACCAGAGCACGCCGG 61.552 57.895 0.00 0.00 0.00 6.13
953 973 2.886124 GCCGCCAGACTCGCTAAC 60.886 66.667 0.00 0.00 0.00 2.34
954 974 2.571757 CCGCCAGACTCGCTAACA 59.428 61.111 0.00 0.00 0.00 2.41
955 975 1.805945 CCGCCAGACTCGCTAACAC 60.806 63.158 0.00 0.00 0.00 3.32
956 976 1.213013 CGCCAGACTCGCTAACACT 59.787 57.895 0.00 0.00 0.00 3.55
958 978 1.135489 CGCCAGACTCGCTAACACTTA 60.135 52.381 0.00 0.00 0.00 2.24
959 979 2.479730 CGCCAGACTCGCTAACACTTAT 60.480 50.000 0.00 0.00 0.00 1.73
969 989 5.258051 TCGCTAACACTTATTTTTCCCCAT 58.742 37.500 0.00 0.00 0.00 4.00
971 994 5.578776 GCTAACACTTATTTTTCCCCATCG 58.421 41.667 0.00 0.00 0.00 3.84
980 1006 5.753721 ATTTTTCCCCATCGAATCCAAAA 57.246 34.783 0.00 0.00 0.00 2.44
985 1011 1.064060 CCCATCGAATCCAAAACTCGC 59.936 52.381 0.00 0.00 32.66 5.03
1003 1030 0.385974 GCGCGAGAAGTTTGCAATGT 60.386 50.000 12.10 0.00 35.80 2.71
1010 1037 0.040425 AAGTTTGCAATGTCGTCGGC 60.040 50.000 0.00 0.00 0.00 5.54
1026 1053 2.695646 GCAGCGTCCGAAATCGAC 59.304 61.111 4.04 0.44 43.02 4.20
1030 1057 2.890371 CGTCCGAAATCGACCCCT 59.110 61.111 4.04 0.00 43.02 4.79
1037 1064 3.325201 AAATCGACCCCTCCGTGGC 62.325 63.158 0.00 0.00 0.00 5.01
1066 1096 1.212229 GTCGTTGAGGAGTCGTCCC 59.788 63.158 10.22 0.68 45.26 4.46
1122 1152 4.752879 GCGGCGGTGGAAGCAGTA 62.753 66.667 9.78 0.00 36.08 2.74
1130 1160 1.135344 GGTGGAAGCAGTAGTCGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
1131 1161 1.540267 GTGGAAGCAGTAGTCGAGACA 59.460 52.381 5.99 0.00 0.00 3.41
1132 1162 1.813178 TGGAAGCAGTAGTCGAGACAG 59.187 52.381 5.99 0.00 0.00 3.51
1133 1163 2.085320 GGAAGCAGTAGTCGAGACAGA 58.915 52.381 5.99 0.00 0.00 3.41
1134 1164 2.096819 GGAAGCAGTAGTCGAGACAGAG 59.903 54.545 5.99 0.00 0.00 3.35
1135 1165 1.745232 AGCAGTAGTCGAGACAGAGG 58.255 55.000 5.99 0.00 0.00 3.69
1176 1206 2.359975 GAAGGGGAGTGCGGGTTG 60.360 66.667 0.00 0.00 0.00 3.77
1189 1219 1.305219 CGGGTTGTGCCTGTACATGG 61.305 60.000 0.00 1.26 38.84 3.66
1225 1259 3.547249 GAGGCGTTCGTGTCGTGGA 62.547 63.158 0.00 0.00 0.00 4.02
1226 1260 2.431942 GGCGTTCGTGTCGTGGAT 60.432 61.111 0.00 0.00 0.00 3.41
1280 1314 2.887568 CATGGTCGACCGCTGCTC 60.888 66.667 28.70 4.41 39.43 4.26
1380 1453 1.973138 CCGATGCAAGCAAGAACAAG 58.027 50.000 0.00 0.00 0.00 3.16
1414 1487 0.684479 TCTCTCCCCGGACACTGATG 60.684 60.000 0.73 0.00 0.00 3.07
1415 1488 0.684479 CTCTCCCCGGACACTGATGA 60.684 60.000 0.73 0.00 0.00 2.92
1416 1489 0.684479 TCTCCCCGGACACTGATGAG 60.684 60.000 0.73 0.00 0.00 2.90
1417 1490 0.684479 CTCCCCGGACACTGATGAGA 60.684 60.000 0.73 0.00 0.00 3.27
1418 1491 0.970937 TCCCCGGACACTGATGAGAC 60.971 60.000 0.73 0.00 0.00 3.36
1419 1492 1.517832 CCCGGACACTGATGAGACC 59.482 63.158 0.73 0.00 0.00 3.85
1420 1493 1.257750 CCCGGACACTGATGAGACCA 61.258 60.000 0.73 0.00 0.00 4.02
1421 1494 0.608130 CCGGACACTGATGAGACCAA 59.392 55.000 0.00 0.00 0.00 3.67
1422 1495 1.404717 CCGGACACTGATGAGACCAAG 60.405 57.143 0.00 0.00 0.00 3.61
1423 1496 1.546029 CGGACACTGATGAGACCAAGA 59.454 52.381 0.00 0.00 0.00 3.02
1424 1497 2.167281 CGGACACTGATGAGACCAAGAT 59.833 50.000 0.00 0.00 0.00 2.40
1425 1498 3.529533 GGACACTGATGAGACCAAGATG 58.470 50.000 0.00 0.00 0.00 2.90
1426 1499 3.529533 GACACTGATGAGACCAAGATGG 58.470 50.000 0.00 0.00 45.02 3.51
1427 1500 3.176411 ACACTGATGAGACCAAGATGGA 58.824 45.455 2.85 0.00 40.96 3.41
1428 1501 3.584406 ACACTGATGAGACCAAGATGGAA 59.416 43.478 2.85 0.00 40.96 3.53
1429 1502 4.190001 CACTGATGAGACCAAGATGGAAG 58.810 47.826 2.85 0.00 40.96 3.46
1430 1503 4.081254 CACTGATGAGACCAAGATGGAAGA 60.081 45.833 2.85 0.00 40.96 2.87
1431 1504 4.533707 ACTGATGAGACCAAGATGGAAGAA 59.466 41.667 2.85 0.00 40.96 2.52
1432 1505 5.095145 TGATGAGACCAAGATGGAAGAAG 57.905 43.478 2.85 0.00 40.96 2.85
1433 1506 3.340814 TGAGACCAAGATGGAAGAAGC 57.659 47.619 2.85 0.00 40.96 3.86
1434 1507 2.639347 TGAGACCAAGATGGAAGAAGCA 59.361 45.455 2.85 0.00 40.96 3.91
1435 1508 3.006247 GAGACCAAGATGGAAGAAGCAC 58.994 50.000 2.85 0.00 40.96 4.40
1436 1509 2.641815 AGACCAAGATGGAAGAAGCACT 59.358 45.455 2.85 0.00 40.96 4.40
1437 1510 3.073650 AGACCAAGATGGAAGAAGCACTT 59.926 43.478 2.85 0.00 40.96 3.16
1438 1511 3.152341 ACCAAGATGGAAGAAGCACTTG 58.848 45.455 2.85 0.00 40.96 3.16
1439 1512 3.152341 CCAAGATGGAAGAAGCACTTGT 58.848 45.455 0.00 0.00 40.96 3.16
1440 1513 3.190118 CCAAGATGGAAGAAGCACTTGTC 59.810 47.826 0.00 0.00 40.96 3.18
1441 1514 2.693069 AGATGGAAGAAGCACTTGTCG 58.307 47.619 1.06 0.00 39.13 4.35
1442 1515 2.037772 AGATGGAAGAAGCACTTGTCGT 59.962 45.455 1.06 0.00 39.13 4.34
1443 1516 1.581934 TGGAAGAAGCACTTGTCGTG 58.418 50.000 1.06 0.00 46.58 4.35
1444 1517 1.134521 TGGAAGAAGCACTTGTCGTGT 60.135 47.619 1.06 0.00 45.57 4.49
1445 1518 1.527311 GGAAGAAGCACTTGTCGTGTC 59.473 52.381 1.06 0.00 45.57 3.67
1446 1519 2.474816 GAAGAAGCACTTGTCGTGTCT 58.525 47.619 1.06 0.00 45.57 3.41
1447 1520 1.858091 AGAAGCACTTGTCGTGTCTG 58.142 50.000 0.00 0.00 45.57 3.51
1448 1521 0.233332 GAAGCACTTGTCGTGTCTGC 59.767 55.000 0.00 0.00 45.57 4.26
1449 1522 1.160329 AAGCACTTGTCGTGTCTGCC 61.160 55.000 0.00 0.00 45.57 4.85
1450 1523 2.943345 GCACTTGTCGTGTCTGCCG 61.943 63.158 0.00 0.00 45.57 5.69
1451 1524 2.661866 ACTTGTCGTGTCTGCCGC 60.662 61.111 0.00 0.00 0.00 6.53
1452 1525 3.414700 CTTGTCGTGTCTGCCGCC 61.415 66.667 0.00 0.00 0.00 6.13
1453 1526 4.228567 TTGTCGTGTCTGCCGCCA 62.229 61.111 0.00 0.00 0.00 5.69
1454 1527 4.961511 TGTCGTGTCTGCCGCCAC 62.962 66.667 0.00 0.00 0.00 5.01
1468 1541 4.147449 CCACCGCTGCCGATGAGA 62.147 66.667 0.00 0.00 36.29 3.27
1469 1542 2.125552 CACCGCTGCCGATGAGAA 60.126 61.111 0.00 0.00 36.29 2.87
1470 1543 2.169789 CACCGCTGCCGATGAGAAG 61.170 63.158 0.00 0.00 36.29 2.85
1471 1544 2.587194 CCGCTGCCGATGAGAAGG 60.587 66.667 0.00 0.00 36.29 3.46
1472 1545 2.496341 CGCTGCCGATGAGAAGGA 59.504 61.111 0.00 0.00 36.29 3.36
1473 1546 1.880340 CGCTGCCGATGAGAAGGAC 60.880 63.158 0.00 0.00 36.29 3.85
1474 1547 1.880340 GCTGCCGATGAGAAGGACG 60.880 63.158 0.00 0.00 0.00 4.79
1475 1548 1.513158 CTGCCGATGAGAAGGACGT 59.487 57.895 0.00 0.00 0.00 4.34
1482 1555 1.002087 GATGAGAAGGACGTGGTGGTT 59.998 52.381 0.00 0.00 0.00 3.67
1484 1557 0.391597 GAGAAGGACGTGGTGGTTGA 59.608 55.000 0.00 0.00 0.00 3.18
1485 1558 0.393077 AGAAGGACGTGGTGGTTGAG 59.607 55.000 0.00 0.00 0.00 3.02
1486 1559 1.227853 AAGGACGTGGTGGTTGAGC 60.228 57.895 0.00 0.00 0.00 4.26
1527 1600 4.792087 GCCGAGTGGGTGAAGAAA 57.208 55.556 0.00 0.00 38.44 2.52
1545 1618 3.923461 AGAAAGAAGAAGCAATCGTCGAG 59.077 43.478 0.00 0.00 40.93 4.04
1582 1655 7.973944 CCTTGTCTTTGGGTAACTAATAATTGC 59.026 37.037 0.00 0.00 36.70 3.56
1583 1656 7.399245 TGTCTTTGGGTAACTAATAATTGCC 57.601 36.000 0.00 0.00 36.70 4.52
1584 1659 7.179269 TGTCTTTGGGTAACTAATAATTGCCT 58.821 34.615 0.00 0.00 36.70 4.75
1592 1667 7.776500 GGGTAACTAATAATTGCCTGGTTAGAA 59.224 37.037 6.53 0.00 32.79 2.10
1605 1945 5.175859 CCTGGTTAGAATTTTGAGCTCGTA 58.824 41.667 9.64 0.00 0.00 3.43
1621 1961 6.073980 TGAGCTCGTAATAACTTTGTGTTCAC 60.074 38.462 9.64 0.00 39.89 3.18
1653 1993 0.538584 TCTGATTGAGGCGCATGAGT 59.461 50.000 10.83 0.00 0.00 3.41
1672 2012 6.062258 TGAGTCTAGTTTTTATCCCCTTGG 57.938 41.667 0.00 0.00 0.00 3.61
1693 2056 3.118665 GGGGGAAATTGTTGGACATGATG 60.119 47.826 0.00 0.00 0.00 3.07
1706 2069 3.365832 GACATGATGCGCAATTTACTGG 58.634 45.455 17.11 1.18 0.00 4.00
1708 2071 3.443329 ACATGATGCGCAATTTACTGGAA 59.557 39.130 17.11 0.00 0.00 3.53
1721 2084 7.064966 GCAATTTACTGGAAAATTTCTGGATGG 59.935 37.037 5.65 0.00 37.03 3.51
1731 2094 9.546428 GGAAAATTTCTGGATGGTTTTATATGG 57.454 33.333 5.65 0.00 0.00 2.74
1846 2222 9.539825 TTGCTTTAGAATTTGTTGATGCTTTTA 57.460 25.926 0.00 0.00 0.00 1.52
1878 2254 2.124903 CGGCTACATATTCACCACGTC 58.875 52.381 0.00 0.00 0.00 4.34
1914 2290 7.725610 GCATTGGCATTATATAACGTTGATC 57.274 36.000 11.99 0.00 40.72 2.92
1915 2291 7.530010 GCATTGGCATTATATAACGTTGATCT 58.470 34.615 11.99 0.00 40.72 2.75
1955 2331 1.804748 GTCTAACAAAGTGGCCTTCGG 59.195 52.381 3.32 0.00 0.00 4.30
1959 2335 1.106944 ACAAAGTGGCCTTCGGTTGG 61.107 55.000 3.32 0.00 0.00 3.77
1960 2336 1.106944 CAAAGTGGCCTTCGGTTGGT 61.107 55.000 3.32 0.00 0.00 3.67
1992 2368 4.414852 CCATGCCGAGTAAGTTTGAAATG 58.585 43.478 0.00 0.00 0.00 2.32
1993 2369 4.414852 CATGCCGAGTAAGTTTGAAATGG 58.585 43.478 0.00 0.00 0.00 3.16
1994 2370 3.745799 TGCCGAGTAAGTTTGAAATGGA 58.254 40.909 0.00 0.00 0.00 3.41
1995 2371 4.331968 TGCCGAGTAAGTTTGAAATGGAT 58.668 39.130 0.00 0.00 0.00 3.41
1996 2372 5.492895 TGCCGAGTAAGTTTGAAATGGATA 58.507 37.500 0.00 0.00 0.00 2.59
1997 2373 5.353123 TGCCGAGTAAGTTTGAAATGGATAC 59.647 40.000 0.00 0.00 0.00 2.24
1998 2374 5.220796 GCCGAGTAAGTTTGAAATGGATACC 60.221 44.000 0.00 0.00 0.00 2.73
1999 2375 5.878116 CCGAGTAAGTTTGAAATGGATACCA 59.122 40.000 0.00 0.00 38.19 3.25
2001 2377 7.713507 CCGAGTAAGTTTGAAATGGATACCATA 59.286 37.037 3.64 0.00 44.40 2.74
2002 2378 9.104965 CGAGTAAGTTTGAAATGGATACCATAA 57.895 33.333 3.64 0.00 44.40 1.90
2366 2772 4.641645 TCCCCCACGCAGCACTTG 62.642 66.667 0.00 0.00 0.00 3.16
2521 2942 3.899545 TTCCCTTCCTCGGAGGCGT 62.900 63.158 19.48 0.00 34.61 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.001073 GGAAAAGCAGAGGACAAAGGATATAT 58.999 38.462 0.00 0.00 0.00 0.86
29 30 5.044550 AGGAAAAGCAGAGGACAAAGGATAT 60.045 40.000 0.00 0.00 0.00 1.63
139 140 4.209307 TCCAACATGCTATAACCAACGA 57.791 40.909 0.00 0.00 0.00 3.85
148 149 6.488006 GTGAATACCTGATTCCAACATGCTAT 59.512 38.462 0.00 0.00 43.04 2.97
155 156 8.958119 TTACATAGTGAATACCTGATTCCAAC 57.042 34.615 0.00 0.00 43.04 3.77
267 268 5.411669 ACTGAAACTACGGGATGAATTTCAC 59.588 40.000 0.15 0.00 33.67 3.18
280 281 4.024893 ACAATGAGTTGCACTGAAACTACG 60.025 41.667 2.03 0.00 37.98 3.51
348 350 4.425520 AGCTACGAGAAGAATTACACAGC 58.574 43.478 0.00 0.00 0.00 4.40
409 411 9.231297 ACTTGCATAAATACACTGAAACTACAT 57.769 29.630 0.00 0.00 0.00 2.29
418 420 8.256611 AGACAGTAACTTGCATAAATACACTG 57.743 34.615 0.00 0.00 37.48 3.66
458 460 5.367945 AAGTCAGGGAATTAAATAGCCGA 57.632 39.130 0.00 0.00 0.00 5.54
466 468 9.131791 GGCTCATATAAAAAGTCAGGGAATTAA 57.868 33.333 0.00 0.00 0.00 1.40
557 560 0.845337 AACCCTGACCCGGTTTACAA 59.155 50.000 0.00 0.00 40.84 2.41
582 585 0.039888 ATTTCGGCAAAAACGGGTCG 60.040 50.000 0.00 0.00 0.00 4.79
732 735 6.100714 AGTCCGGCCTAATCTTTTTCCTATAA 59.899 38.462 0.00 0.00 0.00 0.98
735 738 3.778629 AGTCCGGCCTAATCTTTTTCCTA 59.221 43.478 0.00 0.00 0.00 2.94
736 739 2.576648 AGTCCGGCCTAATCTTTTTCCT 59.423 45.455 0.00 0.00 0.00 3.36
737 740 3.000684 AGTCCGGCCTAATCTTTTTCC 57.999 47.619 0.00 0.00 0.00 3.13
738 741 6.320171 GTTTAAGTCCGGCCTAATCTTTTTC 58.680 40.000 0.00 0.00 0.00 2.29
739 742 5.106436 CGTTTAAGTCCGGCCTAATCTTTTT 60.106 40.000 0.00 0.00 0.00 1.94
740 743 4.393990 CGTTTAAGTCCGGCCTAATCTTTT 59.606 41.667 0.00 0.00 0.00 2.27
741 744 3.937079 CGTTTAAGTCCGGCCTAATCTTT 59.063 43.478 0.00 0.00 0.00 2.52
742 745 3.196254 TCGTTTAAGTCCGGCCTAATCTT 59.804 43.478 0.00 2.95 0.00 2.40
743 746 2.762327 TCGTTTAAGTCCGGCCTAATCT 59.238 45.455 0.00 0.00 0.00 2.40
744 747 3.121544 CTCGTTTAAGTCCGGCCTAATC 58.878 50.000 0.00 0.00 0.00 1.75
768 771 4.657952 GCCCCGCCAATAAGTCTT 57.342 55.556 0.00 0.00 0.00 3.01
786 789 3.999663 CTGGCCTCTCAGAGTTTGTTAAG 59.000 47.826 3.32 0.00 36.93 1.85
787 790 3.807209 GCTGGCCTCTCAGAGTTTGTTAA 60.807 47.826 3.32 0.00 36.93 2.01
788 791 2.289694 GCTGGCCTCTCAGAGTTTGTTA 60.290 50.000 3.32 0.00 36.93 2.41
789 792 1.544314 GCTGGCCTCTCAGAGTTTGTT 60.544 52.381 3.32 0.00 36.93 2.83
790 793 0.036022 GCTGGCCTCTCAGAGTTTGT 59.964 55.000 3.32 0.00 36.93 2.83
792 795 1.552792 GTAGCTGGCCTCTCAGAGTTT 59.447 52.381 3.32 0.00 36.93 2.66
793 796 1.190643 GTAGCTGGCCTCTCAGAGTT 58.809 55.000 3.32 0.00 36.93 3.01
794 797 0.040351 TGTAGCTGGCCTCTCAGAGT 59.960 55.000 3.32 0.00 36.93 3.24
797 800 1.277557 ACTTTGTAGCTGGCCTCTCAG 59.722 52.381 3.32 0.00 37.79 3.35
798 801 1.276421 GACTTTGTAGCTGGCCTCTCA 59.724 52.381 3.32 0.00 0.00 3.27
799 802 1.552792 AGACTTTGTAGCTGGCCTCTC 59.447 52.381 3.32 0.00 0.00 3.20
800 803 1.552792 GAGACTTTGTAGCTGGCCTCT 59.447 52.381 3.32 3.53 0.00 3.69
801 804 1.406205 GGAGACTTTGTAGCTGGCCTC 60.406 57.143 3.32 0.00 0.00 4.70
803 806 0.741221 CGGAGACTTTGTAGCTGGCC 60.741 60.000 0.00 0.00 0.00 5.36
804 807 0.741221 CCGGAGACTTTGTAGCTGGC 60.741 60.000 0.00 0.00 0.00 4.85
805 808 0.741221 GCCGGAGACTTTGTAGCTGG 60.741 60.000 5.05 0.00 0.00 4.85
807 810 1.597461 GGCCGGAGACTTTGTAGCT 59.403 57.895 5.05 0.00 0.00 3.32
808 811 1.449778 GGGCCGGAGACTTTGTAGC 60.450 63.158 5.05 0.00 0.00 3.58
809 812 0.391263 GTGGGCCGGAGACTTTGTAG 60.391 60.000 5.05 0.00 0.00 2.74
810 813 0.834687 AGTGGGCCGGAGACTTTGTA 60.835 55.000 5.05 0.00 0.00 2.41
817 822 1.262640 GGTCTTTAGTGGGCCGGAGA 61.263 60.000 5.05 0.00 0.00 3.71
839 844 4.953579 AGAATTGTCCTAGGACTCAGAGAC 59.046 45.833 35.83 21.66 44.80 3.36
844 849 5.186021 GTGAGAAGAATTGTCCTAGGACTCA 59.814 44.000 35.83 26.26 44.80 3.41
846 851 4.468153 GGTGAGAAGAATTGTCCTAGGACT 59.532 45.833 35.83 20.78 44.80 3.85
851 856 4.579869 GCTTGGTGAGAAGAATTGTCCTA 58.420 43.478 0.00 0.00 37.63 2.94
859 864 1.667830 CGCCGCTTGGTGAGAAGAA 60.668 57.895 0.00 0.00 46.68 2.52
894 914 3.060602 GGAGGAAGAAGAAGTGTTCGTG 58.939 50.000 0.00 0.00 30.09 4.35
901 921 4.645136 GGTTTTTGTGGAGGAAGAAGAAGT 59.355 41.667 0.00 0.00 0.00 3.01
904 924 4.080015 TCTGGTTTTTGTGGAGGAAGAAGA 60.080 41.667 0.00 0.00 0.00 2.87
936 956 2.886124 GTTAGCGAGTCTGGCGGC 60.886 66.667 0.00 0.00 35.00 6.53
939 959 2.649331 TAAGTGTTAGCGAGTCTGGC 57.351 50.000 0.00 0.00 0.00 4.85
941 961 6.402226 GGGAAAAATAAGTGTTAGCGAGTCTG 60.402 42.308 0.00 0.00 0.00 3.51
948 968 5.355910 TCGATGGGGAAAAATAAGTGTTAGC 59.644 40.000 0.00 0.00 0.00 3.09
950 970 7.067737 GGATTCGATGGGGAAAAATAAGTGTTA 59.932 37.037 0.00 0.00 0.00 2.41
953 973 5.359576 TGGATTCGATGGGGAAAAATAAGTG 59.640 40.000 0.00 0.00 0.00 3.16
954 974 5.515106 TGGATTCGATGGGGAAAAATAAGT 58.485 37.500 0.00 0.00 0.00 2.24
955 975 6.463995 TTGGATTCGATGGGGAAAAATAAG 57.536 37.500 0.00 0.00 0.00 1.73
956 976 6.859112 TTTGGATTCGATGGGGAAAAATAA 57.141 33.333 0.00 0.00 0.00 1.40
958 978 5.248248 AGTTTTGGATTCGATGGGGAAAAAT 59.752 36.000 0.00 0.00 0.00 1.82
959 979 4.591072 AGTTTTGGATTCGATGGGGAAAAA 59.409 37.500 0.00 0.00 0.00 1.94
969 989 1.785321 GCGCGAGTTTTGGATTCGA 59.215 52.632 12.10 0.00 36.49 3.71
971 994 0.247301 CTCGCGCGAGTTTTGGATTC 60.247 55.000 43.16 0.00 37.47 2.52
980 1006 2.658707 GCAAACTTCTCGCGCGAGT 61.659 57.895 46.69 32.87 42.49 4.18
985 1011 1.595609 GACATTGCAAACTTCTCGCG 58.404 50.000 1.71 0.00 0.00 5.87
993 1020 0.725784 CTGCCGACGACATTGCAAAC 60.726 55.000 1.71 0.00 32.58 2.93
1010 1037 2.165301 GGGTCGATTTCGGACGCTG 61.165 63.158 0.00 0.00 40.29 5.18
1037 1064 3.487202 CAACGACGATGTGGGGCG 61.487 66.667 0.00 0.00 0.00 6.13
1113 1143 2.085320 TCTGTCTCGACTACTGCTTCC 58.915 52.381 0.00 0.00 0.00 3.46
1119 1149 1.279558 TCTGCCTCTGTCTCGACTACT 59.720 52.381 0.00 0.00 0.00 2.57
1122 1152 1.312371 GCTCTGCCTCTGTCTCGACT 61.312 60.000 0.00 0.00 0.00 4.18
1176 1206 1.369091 CGGCTTCCATGTACAGGCAC 61.369 60.000 0.96 0.00 32.68 5.01
1200 1230 2.357517 ACGAACGCCTCCTTGCAG 60.358 61.111 0.00 0.00 0.00 4.41
1280 1314 0.105039 GAGGTCGGTGATAGCTTGGG 59.895 60.000 0.00 0.00 0.00 4.12
1287 1321 2.094182 GCACTTCTTGAGGTCGGTGATA 60.094 50.000 0.00 0.00 0.00 2.15
1289 1323 0.033504 GCACTTCTTGAGGTCGGTGA 59.966 55.000 0.00 0.00 0.00 4.02
1366 1439 1.538950 CTCTCCCTTGTTCTTGCTTGC 59.461 52.381 0.00 0.00 0.00 4.01
1370 1443 2.568623 TTCCTCTCCCTTGTTCTTGC 57.431 50.000 0.00 0.00 0.00 4.01
1380 1453 2.046108 GAGAGCGGATTCCTCTCCC 58.954 63.158 17.21 3.90 46.08 4.30
1397 1470 0.684479 CTCATCAGTGTCCGGGGAGA 60.684 60.000 0.00 0.00 0.00 3.71
1414 1487 3.006247 GTGCTTCTTCCATCTTGGTCTC 58.994 50.000 0.00 0.00 39.03 3.36
1415 1488 2.641815 AGTGCTTCTTCCATCTTGGTCT 59.358 45.455 0.00 0.00 39.03 3.85
1416 1489 3.064900 AGTGCTTCTTCCATCTTGGTC 57.935 47.619 0.00 0.00 39.03 4.02
1417 1490 3.152341 CAAGTGCTTCTTCCATCTTGGT 58.848 45.455 0.00 0.00 39.03 3.67
1418 1491 3.152341 ACAAGTGCTTCTTCCATCTTGG 58.848 45.455 0.00 0.00 39.43 3.61
1419 1492 3.120408 CGACAAGTGCTTCTTCCATCTTG 60.120 47.826 0.00 0.00 38.40 3.02
1420 1493 3.070018 CGACAAGTGCTTCTTCCATCTT 58.930 45.455 0.00 0.00 33.63 2.40
1421 1494 2.037772 ACGACAAGTGCTTCTTCCATCT 59.962 45.455 0.00 0.00 33.63 2.90
1422 1495 2.158449 CACGACAAGTGCTTCTTCCATC 59.842 50.000 0.00 0.00 44.72 3.51
1423 1496 2.146342 CACGACAAGTGCTTCTTCCAT 58.854 47.619 0.00 0.00 44.72 3.41
1424 1497 1.581934 CACGACAAGTGCTTCTTCCA 58.418 50.000 0.00 0.00 44.72 3.53
1434 1507 2.661866 GCGGCAGACACGACAAGT 60.662 61.111 0.00 0.00 0.00 3.16
1435 1508 3.414700 GGCGGCAGACACGACAAG 61.415 66.667 3.07 0.00 39.67 3.16
1451 1524 3.664025 TTCTCATCGGCAGCGGTGG 62.664 63.158 17.54 0.04 0.00 4.61
1452 1525 2.125552 TTCTCATCGGCAGCGGTG 60.126 61.111 10.98 10.98 0.00 4.94
1453 1526 2.185350 CTTCTCATCGGCAGCGGT 59.815 61.111 0.00 0.00 0.00 5.68
1454 1527 2.587194 CCTTCTCATCGGCAGCGG 60.587 66.667 0.00 0.00 0.00 5.52
1455 1528 1.880340 GTCCTTCTCATCGGCAGCG 60.880 63.158 0.00 0.00 0.00 5.18
1456 1529 1.880340 CGTCCTTCTCATCGGCAGC 60.880 63.158 0.00 0.00 0.00 5.25
1457 1530 0.803768 CACGTCCTTCTCATCGGCAG 60.804 60.000 0.00 0.00 0.00 4.85
1458 1531 1.215382 CACGTCCTTCTCATCGGCA 59.785 57.895 0.00 0.00 0.00 5.69
1459 1532 1.519455 CCACGTCCTTCTCATCGGC 60.519 63.158 0.00 0.00 0.00 5.54
1460 1533 0.458543 CACCACGTCCTTCTCATCGG 60.459 60.000 0.00 0.00 0.00 4.18
1461 1534 0.458543 CCACCACGTCCTTCTCATCG 60.459 60.000 0.00 0.00 0.00 3.84
1462 1535 0.608640 ACCACCACGTCCTTCTCATC 59.391 55.000 0.00 0.00 0.00 2.92
1463 1536 1.056660 AACCACCACGTCCTTCTCAT 58.943 50.000 0.00 0.00 0.00 2.90
1464 1537 0.105964 CAACCACCACGTCCTTCTCA 59.894 55.000 0.00 0.00 0.00 3.27
1465 1538 0.391597 TCAACCACCACGTCCTTCTC 59.608 55.000 0.00 0.00 0.00 2.87
1466 1539 0.393077 CTCAACCACCACGTCCTTCT 59.607 55.000 0.00 0.00 0.00 2.85
1467 1540 1.228657 GCTCAACCACCACGTCCTTC 61.229 60.000 0.00 0.00 0.00 3.46
1468 1541 1.227853 GCTCAACCACCACGTCCTT 60.228 57.895 0.00 0.00 0.00 3.36
1469 1542 2.383245 CTGCTCAACCACCACGTCCT 62.383 60.000 0.00 0.00 0.00 3.85
1470 1543 1.961277 CTGCTCAACCACCACGTCC 60.961 63.158 0.00 0.00 0.00 4.79
1471 1544 1.961277 CCTGCTCAACCACCACGTC 60.961 63.158 0.00 0.00 0.00 4.34
1472 1545 2.111043 CCTGCTCAACCACCACGT 59.889 61.111 0.00 0.00 0.00 4.49
1473 1546 1.669115 CTCCTGCTCAACCACCACG 60.669 63.158 0.00 0.00 0.00 4.94
1474 1547 1.302832 CCTCCTGCTCAACCACCAC 60.303 63.158 0.00 0.00 0.00 4.16
1475 1548 3.160585 CCTCCTGCTCAACCACCA 58.839 61.111 0.00 0.00 0.00 4.17
1516 1589 3.576078 TGCTTCTTCTTTCTTCACCCA 57.424 42.857 0.00 0.00 0.00 4.51
1527 1600 3.506810 CTTCTCGACGATTGCTTCTTCT 58.493 45.455 0.00 0.00 0.00 2.85
1545 1618 2.810852 CAAAGACAAGGACTCTGCCTTC 59.189 50.000 0.00 0.00 44.89 3.46
1582 1655 4.003648 ACGAGCTCAAAATTCTAACCAGG 58.996 43.478 15.40 0.00 0.00 4.45
1583 1656 6.721571 TTACGAGCTCAAAATTCTAACCAG 57.278 37.500 15.40 0.00 0.00 4.00
1584 1659 8.662141 GTTATTACGAGCTCAAAATTCTAACCA 58.338 33.333 15.40 0.00 0.00 3.67
1592 1667 7.871853 ACACAAAGTTATTACGAGCTCAAAAT 58.128 30.769 15.40 14.19 0.00 1.82
1614 1954 9.539825 AATCAGATCATAACTCATAGTGAACAC 57.460 33.333 0.00 0.00 0.00 3.32
1621 1961 6.530887 CGCCTCAATCAGATCATAACTCATAG 59.469 42.308 0.00 0.00 0.00 2.23
1672 2012 3.679639 GCATCATGTCCAACAATTTCCCC 60.680 47.826 0.00 0.00 0.00 4.81
1676 2016 2.029200 TGCGCATCATGTCCAACAATTT 60.029 40.909 5.66 0.00 0.00 1.82
1693 2056 5.163963 CCAGAAATTTTCCAGTAAATTGCGC 60.164 40.000 0.00 0.00 37.86 6.09
1731 2094 8.604035 CACAAACATGATGAGTATGTAACCTAC 58.396 37.037 0.00 0.00 37.77 3.18
1848 2224 9.733556 TGGTGAATATGTAGCCGATATTTTAAT 57.266 29.630 0.00 0.00 0.00 1.40
1852 2228 5.637810 CGTGGTGAATATGTAGCCGATATTT 59.362 40.000 0.00 0.00 0.00 1.40
1854 2230 4.219944 ACGTGGTGAATATGTAGCCGATAT 59.780 41.667 0.00 0.00 0.00 1.63
1855 2231 3.570975 ACGTGGTGAATATGTAGCCGATA 59.429 43.478 0.00 0.00 0.00 2.92
1856 2232 2.364324 ACGTGGTGAATATGTAGCCGAT 59.636 45.455 0.00 0.00 0.00 4.18
1857 2233 1.752498 ACGTGGTGAATATGTAGCCGA 59.248 47.619 0.00 0.00 0.00 5.54
1858 2234 2.124903 GACGTGGTGAATATGTAGCCG 58.875 52.381 0.00 0.00 0.00 5.52
1860 2236 3.782046 ACAGACGTGGTGAATATGTAGC 58.218 45.455 0.00 0.00 0.00 3.58
1861 2237 4.032900 GCAACAGACGTGGTGAATATGTAG 59.967 45.833 0.00 0.00 45.15 2.74
1904 2280 6.561614 GTCATCAGGACTTAGATCAACGTTA 58.438 40.000 0.00 0.00 43.46 3.18
1905 2281 5.411781 GTCATCAGGACTTAGATCAACGTT 58.588 41.667 0.00 0.00 43.46 3.99
1906 2282 5.000012 GTCATCAGGACTTAGATCAACGT 58.000 43.478 0.00 0.00 43.46 3.99
1924 2300 4.389992 CACTTTGTTAGACATCGCAGTCAT 59.610 41.667 9.26 0.00 40.98 3.06
1976 2352 6.978343 TGGTATCCATTTCAAACTTACTCG 57.022 37.500 0.00 0.00 0.00 4.18
2244 2648 4.302509 TCGCGGCCGAGGAAACAA 62.303 61.111 33.48 5.22 38.82 2.83
2376 2782 2.264794 GCCACCGACGACCAGATT 59.735 61.111 0.00 0.00 0.00 2.40
2508 2929 3.437795 GACGACGCCTCCGAGGAA 61.438 66.667 19.33 0.00 37.67 3.36
2521 2942 4.047059 GGGCACGAACCTCGACGA 62.047 66.667 2.59 0.00 43.74 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.