Multiple sequence alignment - TraesCS3A01G498400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G498400 chr3A 100.000 3175 0 0 1 3175 724064623 724067797 0.000000e+00 5864.0
1 TraesCS3A01G498400 chr3A 80.418 909 155 21 1199 2099 724099171 724100064 0.000000e+00 671.0
2 TraesCS3A01G498400 chr3A 74.694 245 44 12 599 839 724064992 724065222 3.370000e-15 93.5
3 TraesCS3A01G498400 chr3A 74.694 245 44 12 370 600 724065221 724065461 3.370000e-15 93.5
4 TraesCS3A01G498400 chrUn 95.303 1618 71 3 600 2215 45761153 45762767 0.000000e+00 2562.0
5 TraesCS3A01G498400 chrUn 96.678 602 18 2 1 600 45760500 45761101 0.000000e+00 1000.0
6 TraesCS3A01G498400 chrUn 94.675 169 8 1 2257 2425 45762782 45762949 8.740000e-66 261.0
7 TraesCS3A01G498400 chrUn 79.167 336 21 22 2407 2726 45762962 45763264 1.500000e-43 187.0
8 TraesCS3A01G498400 chrUn 77.667 300 51 10 599 895 45760871 45761157 5.450000e-38 169.0
9 TraesCS3A01G498400 chrUn 75.200 250 41 13 365 600 45761147 45761389 7.250000e-17 99.0
10 TraesCS3A01G498400 chr3B 93.590 78 4 1 1919 1996 794991761 794991837 7.200000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G498400 chr3A 724064623 724067797 3174 False 2017 5864 83.129333 1 3175 3 chr3A.!!$F2 3174
1 TraesCS3A01G498400 chr3A 724099171 724100064 893 False 671 671 80.418000 1199 2099 1 chr3A.!!$F1 900
2 TraesCS3A01G498400 chrUn 45760500 45763264 2764 False 713 2562 86.448333 1 2726 6 chrUn.!!$F1 2725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 483 0.179084 AATACATGACTCACCGCCCG 60.179 55.0 0.00 0.0 0.00 6.13 F
1815 1871 0.389426 CGGTGTTCCTCAAGGTACGG 60.389 60.0 1.96 0.0 38.19 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2159 0.605319 GTCGTTGAACCCTGCATCCA 60.605 55.0 0.0 0.0 0.00 3.41 R
2908 3018 0.036010 ATGCCAAGTCGTTGAGGAGG 60.036 55.0 0.0 0.0 35.46 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 9.162764 TCCTCTAGCAAAATAAAATAGTGTCAC 57.837 33.333 0.00 0.00 0.00 3.67
131 132 4.256920 TCCAGCTTAGCAGATCTTGTTTC 58.743 43.478 7.07 0.00 0.00 2.78
139 140 8.281893 GCTTAGCAGATCTTGTTTCTATTCATC 58.718 37.037 0.00 0.00 0.00 2.92
146 147 4.935205 TCTTGTTTCTATTCATCCACGTGG 59.065 41.667 29.26 29.26 0.00 4.94
325 328 5.827797 AGAAACAACTCATTACAAGCTCCAA 59.172 36.000 0.00 0.00 0.00 3.53
326 329 6.321181 AGAAACAACTCATTACAAGCTCCAAA 59.679 34.615 0.00 0.00 0.00 3.28
396 399 1.870458 CAAATGCTGGCATGTCGCG 60.870 57.895 8.91 0.00 43.84 5.87
457 460 2.540383 ACCTAGTGAACCTGCATGAGA 58.460 47.619 0.00 0.00 0.00 3.27
467 470 5.711506 TGAACCTGCATGAGACAAAATACAT 59.288 36.000 0.00 0.00 0.00 2.29
480 483 0.179084 AATACATGACTCACCGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
500 503 5.333721 GCCCGTTGTCAAAATAAAACATTGG 60.334 40.000 0.00 0.00 0.00 3.16
650 705 0.771127 AGGAAGTGGTGCAAAGCCTA 59.229 50.000 0.00 0.00 0.00 3.93
651 706 1.144913 AGGAAGTGGTGCAAAGCCTAA 59.855 47.619 0.00 0.00 0.00 2.69
652 707 1.960689 GGAAGTGGTGCAAAGCCTAAA 59.039 47.619 0.00 0.00 0.00 1.85
720 775 6.348540 GGTTCACTGTCCACTAGCAAAATAAG 60.349 42.308 0.00 0.00 0.00 1.73
727 782 6.030228 GTCCACTAGCAAAATAAGACAATGC 58.970 40.000 0.00 0.00 37.28 3.56
904 959 3.054361 ACAACTAATGGAATCCGAGGCTT 60.054 43.478 0.00 0.00 0.00 4.35
956 1011 6.852420 TCTTGAGTTAGGCACTTGTAGTAT 57.148 37.500 0.00 0.00 41.75 2.12
966 1021 4.202223 GGCACTTGTAGTATAGGCTAGCAA 60.202 45.833 18.24 4.01 0.00 3.91
994 1049 1.830847 GTTGAAAACCACCCGGCCT 60.831 57.895 0.00 0.00 42.21 5.19
1071 1126 5.088730 TGGAACCTCACTTTTAGCTACCTA 58.911 41.667 0.00 0.00 0.00 3.08
1086 1141 1.680338 ACCTAAAATCCATGGCGCTC 58.320 50.000 6.96 0.00 0.00 5.03
1108 1163 1.492176 AGTGTGCCATCAATCTAGGGG 59.508 52.381 0.00 0.00 0.00 4.79
1178 1233 0.395724 CTTGCCACCCTTCCCATACC 60.396 60.000 0.00 0.00 0.00 2.73
1185 1240 0.761802 CCCTTCCCATACCTGAGAGC 59.238 60.000 0.00 0.00 0.00 4.09
1200 1255 3.093057 TGAGAGCAAGAAGTCCTACCTC 58.907 50.000 0.00 0.00 0.00 3.85
1230 1285 2.282958 AGGTTCCTCGTCGCCTCA 60.283 61.111 0.00 0.00 0.00 3.86
1259 1314 1.748879 CGGTTGATGTCCCCGCAAT 60.749 57.895 0.00 0.00 34.62 3.56
1275 1330 1.871080 CAATAGGGGAGTGCGCTAAG 58.129 55.000 12.38 5.06 0.00 2.18
1316 1371 5.356190 CCTACTGTCTCACACCGTTATCTTA 59.644 44.000 0.00 0.00 0.00 2.10
1317 1372 5.916661 ACTGTCTCACACCGTTATCTTAT 57.083 39.130 0.00 0.00 0.00 1.73
1407 1462 5.060506 CAGACCAACAAGTACCATGTAACA 58.939 41.667 2.62 0.00 0.00 2.41
1684 1739 0.906282 AATTGCCAAGGCCTTCCCAG 60.906 55.000 17.29 3.99 41.09 4.45
1697 1752 3.690460 CCTTCCCAGACATTAAGTGCTT 58.310 45.455 0.00 0.00 0.00 3.91
1749 1804 0.526211 TCTCATCCGACGGAACAGTG 59.474 55.000 22.55 14.71 34.34 3.66
1815 1871 0.389426 CGGTGTTCCTCAAGGTACGG 60.389 60.000 1.96 0.00 38.19 4.02
1838 1894 4.565166 GCACTAAGTTTGTTTTGGGTGAAC 59.435 41.667 0.00 0.00 0.00 3.18
1850 1908 8.017418 TGTTTTGGGTGAACTTTCTTATGAAT 57.983 30.769 0.00 0.00 31.56 2.57
1988 2046 9.349713 GGAAAAGTGATAATTGTGGATATGGTA 57.650 33.333 0.00 0.00 0.00 3.25
1996 2054 2.036387 TGTGGATATGGTAGTCGGGTG 58.964 52.381 0.00 0.00 0.00 4.61
2003 2061 0.901580 TGGTAGTCGGGTGTCCTTCC 60.902 60.000 0.00 0.00 0.00 3.46
2037 2095 2.568623 AGCCCAAGTCTTGTTCGATT 57.431 45.000 11.61 0.00 0.00 3.34
2040 2098 2.922335 GCCCAAGTCTTGTTCGATTTGC 60.922 50.000 11.61 0.00 31.56 3.68
2101 2159 4.404640 CATGAGTGGGGCAAGATATTCAT 58.595 43.478 0.00 0.00 0.00 2.57
2116 2174 2.601240 TTCATGGATGCAGGGTTCAA 57.399 45.000 0.00 0.00 0.00 2.69
2118 2176 0.452987 CATGGATGCAGGGTTCAACG 59.547 55.000 0.00 0.00 0.00 4.10
2202 2260 1.549203 AGAATGGTTGATGTGGCACC 58.451 50.000 16.26 0.43 0.00 5.01
2205 2263 2.091640 ATGGTTGATGTGGCACCCCA 62.092 55.000 16.26 13.01 39.32 4.96
2208 2266 0.323725 GTTGATGTGGCACCCCAGAT 60.324 55.000 16.26 0.41 46.93 2.90
2225 2288 2.975489 CAGATAGGGGTGAAGCCAGTAT 59.025 50.000 0.27 0.00 39.65 2.12
2226 2289 4.160329 CAGATAGGGGTGAAGCCAGTATA 58.840 47.826 0.27 0.00 39.65 1.47
2227 2290 4.593206 CAGATAGGGGTGAAGCCAGTATAA 59.407 45.833 0.27 0.00 39.65 0.98
2228 2291 5.071788 CAGATAGGGGTGAAGCCAGTATAAA 59.928 44.000 0.27 0.00 39.65 1.40
2229 2292 5.852250 AGATAGGGGTGAAGCCAGTATAAAT 59.148 40.000 0.27 0.00 39.65 1.40
2230 2293 4.170468 AGGGGTGAAGCCAGTATAAATG 57.830 45.455 0.27 0.00 39.65 2.32
2231 2294 2.623416 GGGGTGAAGCCAGTATAAATGC 59.377 50.000 0.27 0.00 39.65 3.56
2232 2295 3.555966 GGGTGAAGCCAGTATAAATGCT 58.444 45.455 0.00 0.00 39.65 3.79
2233 2296 3.954258 GGGTGAAGCCAGTATAAATGCTT 59.046 43.478 0.00 0.00 46.07 3.91
2234 2297 5.130350 GGGTGAAGCCAGTATAAATGCTTA 58.870 41.667 0.00 0.00 43.63 3.09
2235 2298 5.592688 GGGTGAAGCCAGTATAAATGCTTAA 59.407 40.000 0.00 0.00 43.63 1.85
2236 2299 6.265422 GGGTGAAGCCAGTATAAATGCTTAAT 59.735 38.462 0.00 0.00 43.63 1.40
2237 2300 7.141363 GGTGAAGCCAGTATAAATGCTTAATG 58.859 38.462 0.00 0.00 43.63 1.90
2238 2301 7.141363 GTGAAGCCAGTATAAATGCTTAATGG 58.859 38.462 0.00 0.00 43.63 3.16
2239 2302 6.265196 TGAAGCCAGTATAAATGCTTAATGGG 59.735 38.462 0.00 0.00 43.63 4.00
2240 2303 5.705400 AGCCAGTATAAATGCTTAATGGGT 58.295 37.500 0.00 0.00 30.82 4.51
2241 2304 6.136155 AGCCAGTATAAATGCTTAATGGGTT 58.864 36.000 0.00 0.00 31.24 4.11
2242 2305 6.265422 AGCCAGTATAAATGCTTAATGGGTTC 59.735 38.462 0.00 0.00 31.24 3.62
2243 2306 6.040391 GCCAGTATAAATGCTTAATGGGTTCA 59.960 38.462 0.00 0.00 0.00 3.18
2244 2307 7.425606 CCAGTATAAATGCTTAATGGGTTCAC 58.574 38.462 0.00 0.00 0.00 3.18
2245 2308 7.425606 CAGTATAAATGCTTAATGGGTTCACC 58.574 38.462 0.00 0.00 40.81 4.02
2246 2309 7.285401 CAGTATAAATGCTTAATGGGTTCACCT 59.715 37.037 0.00 0.00 41.11 4.00
2247 2310 7.839200 AGTATAAATGCTTAATGGGTTCACCTT 59.161 33.333 0.00 0.00 41.11 3.50
2248 2311 5.405935 AAATGCTTAATGGGTTCACCTTC 57.594 39.130 0.00 0.00 41.11 3.46
2249 2312 3.806949 TGCTTAATGGGTTCACCTTCT 57.193 42.857 0.00 0.00 41.11 2.85
2250 2313 3.686016 TGCTTAATGGGTTCACCTTCTC 58.314 45.455 0.00 0.00 41.11 2.87
2251 2314 3.017442 GCTTAATGGGTTCACCTTCTCC 58.983 50.000 0.00 0.00 41.11 3.71
2252 2315 3.561313 GCTTAATGGGTTCACCTTCTCCA 60.561 47.826 0.00 0.00 41.11 3.86
2253 2316 4.860022 CTTAATGGGTTCACCTTCTCCAT 58.140 43.478 0.00 0.00 41.11 3.41
2254 2317 3.372440 AATGGGTTCACCTTCTCCATC 57.628 47.619 0.00 0.00 41.11 3.51
2255 2318 1.741028 TGGGTTCACCTTCTCCATCA 58.259 50.000 0.00 0.00 41.11 3.07
2256 2319 2.061848 TGGGTTCACCTTCTCCATCAA 58.938 47.619 0.00 0.00 41.11 2.57
2270 2333 5.253330 TCTCCATCAAACTATTGGGTCAAC 58.747 41.667 0.00 0.00 37.15 3.18
2319 2382 9.447157 AGTGACTTAGTACTAGTAGAACGAAAT 57.553 33.333 1.87 0.00 0.00 2.17
2354 2417 0.552848 GATGGATCTTCCCTTGGCCA 59.447 55.000 0.00 0.00 35.03 5.36
2361 2424 0.111253 CTTCCCTTGGCCACAGAGTT 59.889 55.000 3.88 0.00 0.00 3.01
2372 2435 3.005791 GGCCACAGAGTTTAATTGTTGCT 59.994 43.478 0.00 0.00 34.84 3.91
2386 2449 3.574284 TGTTGCTATGCACATTTGTCC 57.426 42.857 0.00 0.00 38.71 4.02
2487 2581 4.630894 AAAAAGCAATGAGACGTGTTCA 57.369 36.364 0.00 0.00 0.00 3.18
2488 2582 3.609103 AAAGCAATGAGACGTGTTCAC 57.391 42.857 0.00 0.00 0.00 3.18
2504 2598 7.987649 ACGTGTTCACAAATAGTAAAGGAAAA 58.012 30.769 3.87 0.00 0.00 2.29
2516 2610 9.541884 AATAGTAAAGGAAAATAGGGCTTGAAA 57.458 29.630 0.00 0.00 0.00 2.69
2517 2611 9.715119 ATAGTAAAGGAAAATAGGGCTTGAAAT 57.285 29.630 0.00 0.00 0.00 2.17
2588 2687 7.920160 TTGAAGAAGCAATGATACATGTGTA 57.080 32.000 9.11 0.00 34.67 2.90
2589 2688 8.510243 TTGAAGAAGCAATGATACATGTGTAT 57.490 30.769 9.11 5.40 43.38 2.29
2590 2689 7.922837 TGAAGAAGCAATGATACATGTGTATG 58.077 34.615 9.11 3.52 40.99 2.39
2626 2725 6.506500 AAAAGAAGCAATGATACCTGACAG 57.493 37.500 0.00 0.00 0.00 3.51
2643 2742 5.453762 CCTGACAGACATACTATGATGGCAA 60.454 44.000 3.32 0.00 37.30 4.52
2644 2743 6.178607 TGACAGACATACTATGATGGCAAT 57.821 37.500 10.38 0.00 37.30 3.56
2648 2747 6.484643 ACAGACATACTATGATGGCAATGTTC 59.515 38.462 2.90 0.00 37.30 3.18
2679 2789 1.154016 CTCCAGGCACGTCACGTAG 60.154 63.158 0.41 0.00 38.32 3.51
2730 2840 9.436957 AAGGGAATTATAAGTGCGTATATGAAG 57.563 33.333 0.13 0.00 0.00 3.02
2731 2841 7.549488 AGGGAATTATAAGTGCGTATATGAAGC 59.451 37.037 0.00 0.00 0.00 3.86
2732 2842 7.391786 GGAATTATAAGTGCGTATATGAAGCG 58.608 38.462 0.00 0.00 34.91 4.68
2733 2843 7.274904 GGAATTATAAGTGCGTATATGAAGCGA 59.725 37.037 0.00 0.00 34.91 4.93
2734 2844 8.703604 AATTATAAGTGCGTATATGAAGCGAT 57.296 30.769 0.00 0.00 34.91 4.58
2735 2845 8.703604 ATTATAAGTGCGTATATGAAGCGATT 57.296 30.769 0.00 0.00 34.91 3.34
2736 2846 4.974103 AAGTGCGTATATGAAGCGATTC 57.026 40.909 6.43 6.43 34.91 2.52
2737 2847 3.318017 AGTGCGTATATGAAGCGATTCC 58.682 45.455 11.45 0.00 34.91 3.01
2738 2848 3.057019 GTGCGTATATGAAGCGATTCCA 58.943 45.455 11.45 0.00 34.91 3.53
2739 2849 3.121944 GTGCGTATATGAAGCGATTCCAG 59.878 47.826 11.45 0.00 34.91 3.86
2740 2850 2.668457 GCGTATATGAAGCGATTCCAGG 59.332 50.000 11.45 0.93 0.00 4.45
2741 2851 3.861131 GCGTATATGAAGCGATTCCAGGT 60.861 47.826 11.45 0.00 0.00 4.00
2742 2852 4.307432 CGTATATGAAGCGATTCCAGGTT 58.693 43.478 11.45 0.00 0.00 3.50
2743 2853 5.466819 CGTATATGAAGCGATTCCAGGTTA 58.533 41.667 11.45 0.00 0.00 2.85
2744 2854 5.345202 CGTATATGAAGCGATTCCAGGTTAC 59.655 44.000 11.45 5.24 0.00 2.50
2745 2855 2.004583 TGAAGCGATTCCAGGTTACG 57.995 50.000 11.45 0.00 0.00 3.18
2746 2856 1.274167 TGAAGCGATTCCAGGTTACGT 59.726 47.619 11.45 0.00 0.00 3.57
2747 2857 1.659098 GAAGCGATTCCAGGTTACGTG 59.341 52.381 0.88 0.00 0.00 4.49
2748 2858 0.892755 AGCGATTCCAGGTTACGTGA 59.107 50.000 6.62 0.00 0.00 4.35
2749 2859 1.135083 AGCGATTCCAGGTTACGTGAG 60.135 52.381 6.62 0.00 0.00 3.51
2750 2860 1.135199 GCGATTCCAGGTTACGTGAGA 60.135 52.381 6.62 0.00 0.00 3.27
2751 2861 2.673043 GCGATTCCAGGTTACGTGAGAA 60.673 50.000 6.62 8.61 0.00 2.87
2752 2862 2.921754 CGATTCCAGGTTACGTGAGAAC 59.078 50.000 6.62 0.00 0.00 3.01
2753 2863 3.367087 CGATTCCAGGTTACGTGAGAACT 60.367 47.826 6.62 0.00 0.00 3.01
2754 2864 3.380479 TTCCAGGTTACGTGAGAACTG 57.620 47.619 6.62 2.18 0.00 3.16
2755 2865 2.313317 TCCAGGTTACGTGAGAACTGT 58.687 47.619 6.62 0.00 0.00 3.55
2756 2866 2.696707 TCCAGGTTACGTGAGAACTGTT 59.303 45.455 6.62 0.00 0.00 3.16
2757 2867 3.133362 TCCAGGTTACGTGAGAACTGTTT 59.867 43.478 6.62 0.00 0.00 2.83
2758 2868 4.341806 TCCAGGTTACGTGAGAACTGTTTA 59.658 41.667 6.62 0.00 0.00 2.01
2759 2869 4.684703 CCAGGTTACGTGAGAACTGTTTAG 59.315 45.833 6.62 0.00 0.00 1.85
2760 2870 5.508489 CCAGGTTACGTGAGAACTGTTTAGA 60.508 44.000 6.62 0.00 0.00 2.10
2761 2871 5.981315 CAGGTTACGTGAGAACTGTTTAGAA 59.019 40.000 0.00 0.00 0.00 2.10
2762 2872 6.477688 CAGGTTACGTGAGAACTGTTTAGAAA 59.522 38.462 0.00 0.00 0.00 2.52
2763 2873 7.010738 CAGGTTACGTGAGAACTGTTTAGAAAA 59.989 37.037 0.00 0.00 0.00 2.29
2764 2874 7.550196 AGGTTACGTGAGAACTGTTTAGAAAAA 59.450 33.333 0.00 0.00 0.00 1.94
2782 2892 2.116827 AAAAACACGTGACCAGGTCA 57.883 45.000 25.01 19.21 40.50 4.02
2783 2893 2.341846 AAAACACGTGACCAGGTCAT 57.658 45.000 25.59 7.79 44.63 3.06
2787 2897 2.048222 CGTGACCAGGTCATGCGT 60.048 61.111 25.91 0.00 44.63 5.24
2788 2898 2.382746 CGTGACCAGGTCATGCGTG 61.383 63.158 25.91 10.70 44.63 5.34
2789 2899 2.358615 TGACCAGGTCATGCGTGC 60.359 61.111 19.21 0.00 37.67 5.34
2790 2900 2.046892 GACCAGGTCATGCGTGCT 60.047 61.111 15.43 0.00 32.09 4.40
2791 2901 2.046892 ACCAGGTCATGCGTGCTC 60.047 61.111 0.00 0.00 0.00 4.26
2792 2902 2.046988 CCAGGTCATGCGTGCTCA 60.047 61.111 0.00 0.00 0.00 4.26
2793 2903 1.450848 CCAGGTCATGCGTGCTCAT 60.451 57.895 0.00 0.00 0.00 2.90
2794 2904 1.434622 CCAGGTCATGCGTGCTCATC 61.435 60.000 0.00 0.00 0.00 2.92
2795 2905 1.520120 AGGTCATGCGTGCTCATCG 60.520 57.895 0.00 0.00 0.00 3.84
2804 2914 3.059099 TGCTCATCGCACCACAGA 58.941 55.556 0.00 0.00 45.47 3.41
2805 2915 1.079612 TGCTCATCGCACCACAGAG 60.080 57.895 0.00 0.00 45.47 3.35
2806 2916 2.459442 GCTCATCGCACCACAGAGC 61.459 63.158 0.00 0.00 43.95 4.09
2807 2917 1.079612 CTCATCGCACCACAGAGCA 60.080 57.895 0.00 0.00 0.00 4.26
2808 2918 0.671472 CTCATCGCACCACAGAGCAA 60.671 55.000 0.00 0.00 0.00 3.91
2809 2919 0.250252 TCATCGCACCACAGAGCAAA 60.250 50.000 0.00 0.00 0.00 3.68
2810 2920 0.167470 CATCGCACCACAGAGCAAAG 59.833 55.000 0.00 0.00 0.00 2.77
2811 2921 0.250467 ATCGCACCACAGAGCAAAGT 60.250 50.000 0.00 0.00 0.00 2.66
2812 2922 0.880278 TCGCACCACAGAGCAAAGTC 60.880 55.000 0.00 0.00 0.00 3.01
2813 2923 1.845809 CGCACCACAGAGCAAAGTCC 61.846 60.000 0.00 0.00 0.00 3.85
2814 2924 1.518903 GCACCACAGAGCAAAGTCCC 61.519 60.000 0.00 0.00 0.00 4.46
2815 2925 0.890996 CACCACAGAGCAAAGTCCCC 60.891 60.000 0.00 0.00 0.00 4.81
2816 2926 1.672356 CCACAGAGCAAAGTCCCCG 60.672 63.158 0.00 0.00 0.00 5.73
2817 2927 2.032681 ACAGAGCAAAGTCCCCGC 59.967 61.111 0.00 0.00 0.00 6.13
2818 2928 2.747855 CAGAGCAAAGTCCCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
2819 2929 4.035102 AGAGCAAAGTCCCCGCCC 62.035 66.667 0.00 0.00 0.00 6.13
2823 2933 4.426313 CAAAGTCCCCGCCCCTCC 62.426 72.222 0.00 0.00 0.00 4.30
2824 2934 4.677151 AAAGTCCCCGCCCCTCCT 62.677 66.667 0.00 0.00 0.00 3.69
2825 2935 4.677151 AAGTCCCCGCCCCTCCTT 62.677 66.667 0.00 0.00 0.00 3.36
2826 2936 2.776053 AAAGTCCCCGCCCCTCCTTA 62.776 60.000 0.00 0.00 0.00 2.69
2827 2937 2.447959 GTCCCCGCCCCTCCTTAT 60.448 66.667 0.00 0.00 0.00 1.73
2828 2938 2.447765 TCCCCGCCCCTCCTTATG 60.448 66.667 0.00 0.00 0.00 1.90
2829 2939 2.447765 CCCCGCCCCTCCTTATGA 60.448 66.667 0.00 0.00 0.00 2.15
2830 2940 2.819284 CCCCGCCCCTCCTTATGAC 61.819 68.421 0.00 0.00 0.00 3.06
2831 2941 1.766461 CCCGCCCCTCCTTATGACT 60.766 63.158 0.00 0.00 0.00 3.41
2832 2942 1.345715 CCCGCCCCTCCTTATGACTT 61.346 60.000 0.00 0.00 0.00 3.01
2833 2943 0.179045 CCGCCCCTCCTTATGACTTG 60.179 60.000 0.00 0.00 0.00 3.16
2834 2944 0.179045 CGCCCCTCCTTATGACTTGG 60.179 60.000 0.00 0.00 0.00 3.61
2835 2945 0.466372 GCCCCTCCTTATGACTTGGC 60.466 60.000 0.00 0.00 0.00 4.52
2836 2946 0.183731 CCCCTCCTTATGACTTGGCC 59.816 60.000 0.00 0.00 0.00 5.36
2837 2947 0.183731 CCCTCCTTATGACTTGGCCC 59.816 60.000 0.00 0.00 0.00 5.80
2838 2948 0.918983 CCTCCTTATGACTTGGCCCA 59.081 55.000 0.00 0.00 0.00 5.36
2839 2949 1.496429 CCTCCTTATGACTTGGCCCAT 59.504 52.381 0.00 0.00 0.00 4.00
2840 2950 2.579873 CTCCTTATGACTTGGCCCATG 58.420 52.381 0.00 0.00 0.00 3.66
2841 2951 1.035139 CCTTATGACTTGGCCCATGC 58.965 55.000 0.00 0.00 0.00 4.06
2851 2961 2.973082 GCCCATGCCAACAAGGTC 59.027 61.111 0.00 0.00 40.61 3.85
2852 2962 1.907807 GCCCATGCCAACAAGGTCA 60.908 57.895 0.00 0.00 40.61 4.02
2853 2963 1.966762 CCCATGCCAACAAGGTCAC 59.033 57.895 0.00 0.00 40.61 3.67
2854 2964 1.535204 CCCATGCCAACAAGGTCACC 61.535 60.000 0.00 0.00 40.61 4.02
2855 2965 0.827089 CCATGCCAACAAGGTCACCA 60.827 55.000 0.00 0.00 40.61 4.17
2856 2966 0.314935 CATGCCAACAAGGTCACCAC 59.685 55.000 0.00 0.00 40.61 4.16
2857 2967 0.827507 ATGCCAACAAGGTCACCACC 60.828 55.000 0.00 0.00 44.19 4.61
2865 2975 4.309950 GGTCACCACCGTCCGCTT 62.310 66.667 0.00 0.00 31.06 4.68
2866 2976 3.041940 GTCACCACCGTCCGCTTG 61.042 66.667 0.00 0.00 0.00 4.01
2867 2977 3.542676 TCACCACCGTCCGCTTGT 61.543 61.111 0.00 0.00 0.00 3.16
2868 2978 2.201708 TCACCACCGTCCGCTTGTA 61.202 57.895 0.00 0.00 0.00 2.41
2869 2979 2.025418 CACCACCGTCCGCTTGTAC 61.025 63.158 0.00 0.00 0.00 2.90
2870 2980 2.205152 ACCACCGTCCGCTTGTACT 61.205 57.895 0.00 0.00 0.00 2.73
2871 2981 1.736645 CCACCGTCCGCTTGTACTG 60.737 63.158 0.00 0.00 0.00 2.74
2872 2982 1.287815 CACCGTCCGCTTGTACTGA 59.712 57.895 0.00 0.00 0.00 3.41
2873 2983 0.108804 CACCGTCCGCTTGTACTGAT 60.109 55.000 0.00 0.00 0.00 2.90
2874 2984 0.108804 ACCGTCCGCTTGTACTGATG 60.109 55.000 0.00 0.00 0.00 3.07
2875 2985 0.806102 CCGTCCGCTTGTACTGATGG 60.806 60.000 0.00 0.00 0.00 3.51
2876 2986 0.806102 CGTCCGCTTGTACTGATGGG 60.806 60.000 0.00 0.00 0.00 4.00
2877 2987 0.535335 GTCCGCTTGTACTGATGGGA 59.465 55.000 0.00 0.00 0.00 4.37
2878 2988 0.824109 TCCGCTTGTACTGATGGGAG 59.176 55.000 0.00 0.00 0.00 4.30
2879 2989 0.179073 CCGCTTGTACTGATGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
2880 2990 0.824109 CGCTTGTACTGATGGGAGGA 59.176 55.000 0.00 0.00 0.00 3.71
2881 2991 1.207089 CGCTTGTACTGATGGGAGGAA 59.793 52.381 0.00 0.00 0.00 3.36
2882 2992 2.158900 CGCTTGTACTGATGGGAGGAAT 60.159 50.000 0.00 0.00 0.00 3.01
2883 2993 3.069586 CGCTTGTACTGATGGGAGGAATA 59.930 47.826 0.00 0.00 0.00 1.75
2884 2994 4.381411 GCTTGTACTGATGGGAGGAATAC 58.619 47.826 0.00 0.00 0.00 1.89
2885 2995 4.743955 GCTTGTACTGATGGGAGGAATACC 60.744 50.000 0.00 0.00 0.00 2.73
2886 2996 4.002256 TGTACTGATGGGAGGAATACCA 57.998 45.455 0.00 0.00 41.76 3.25
2887 2997 4.367166 TGTACTGATGGGAGGAATACCAA 58.633 43.478 0.00 0.00 40.73 3.67
2888 2998 4.408921 TGTACTGATGGGAGGAATACCAAG 59.591 45.833 0.00 0.00 40.73 3.61
2889 2999 3.736094 ACTGATGGGAGGAATACCAAGA 58.264 45.455 0.00 0.00 40.73 3.02
2890 3000 4.310740 ACTGATGGGAGGAATACCAAGAT 58.689 43.478 0.00 0.00 40.73 2.40
2891 3001 4.728860 ACTGATGGGAGGAATACCAAGATT 59.271 41.667 0.00 0.00 40.73 2.40
2892 3002 5.194537 ACTGATGGGAGGAATACCAAGATTT 59.805 40.000 0.00 0.00 40.73 2.17
2893 3003 5.694995 TGATGGGAGGAATACCAAGATTTC 58.305 41.667 0.00 0.00 40.73 2.17
2894 3004 4.519906 TGGGAGGAATACCAAGATTTCC 57.480 45.455 0.00 0.00 39.38 3.13
2895 3005 3.204382 TGGGAGGAATACCAAGATTTCCC 59.796 47.826 0.00 0.00 41.08 3.97
2896 3006 3.204382 GGGAGGAATACCAAGATTTCCCA 59.796 47.826 1.48 0.00 40.67 4.37
2897 3007 4.325816 GGGAGGAATACCAAGATTTCCCAA 60.326 45.833 1.48 0.00 40.67 4.12
2898 3008 5.269189 GGAGGAATACCAAGATTTCCCAAA 58.731 41.667 0.00 0.00 39.83 3.28
2899 3009 5.360999 GGAGGAATACCAAGATTTCCCAAAG 59.639 44.000 0.00 0.00 39.83 2.77
2900 3010 5.272402 AGGAATACCAAGATTTCCCAAAGG 58.728 41.667 0.00 0.00 39.83 3.11
2901 3011 4.405680 GGAATACCAAGATTTCCCAAAGGG 59.594 45.833 0.00 0.00 39.17 3.95
2902 3012 4.692523 ATACCAAGATTTCCCAAAGGGT 57.307 40.909 1.36 0.00 44.74 4.34
2903 3013 2.608623 ACCAAGATTTCCCAAAGGGTG 58.391 47.619 1.36 0.00 44.74 4.61
2904 3014 1.276138 CCAAGATTTCCCAAAGGGTGC 59.724 52.381 1.36 0.00 44.74 5.01
2905 3015 1.969923 CAAGATTTCCCAAAGGGTGCA 59.030 47.619 1.36 0.00 44.74 4.57
2906 3016 2.368221 CAAGATTTCCCAAAGGGTGCAA 59.632 45.455 1.36 0.00 44.74 4.08
2907 3017 1.970640 AGATTTCCCAAAGGGTGCAAC 59.029 47.619 0.00 0.00 44.74 4.17
2918 3028 3.655481 GTGCAACCCTCCTCAACG 58.345 61.111 0.00 0.00 0.00 4.10
2919 3029 1.070786 GTGCAACCCTCCTCAACGA 59.929 57.895 0.00 0.00 0.00 3.85
2920 3030 1.070786 TGCAACCCTCCTCAACGAC 59.929 57.895 0.00 0.00 0.00 4.34
2921 3031 1.371558 GCAACCCTCCTCAACGACT 59.628 57.895 0.00 0.00 0.00 4.18
2922 3032 0.250338 GCAACCCTCCTCAACGACTT 60.250 55.000 0.00 0.00 0.00 3.01
2923 3033 1.512926 CAACCCTCCTCAACGACTTG 58.487 55.000 0.00 0.00 0.00 3.16
2924 3034 0.396811 AACCCTCCTCAACGACTTGG 59.603 55.000 0.00 0.00 0.00 3.61
2925 3035 1.376037 CCCTCCTCAACGACTTGGC 60.376 63.158 0.00 0.00 0.00 4.52
2926 3036 1.371183 CCTCCTCAACGACTTGGCA 59.629 57.895 0.00 0.00 0.00 4.92
2927 3037 0.036010 CCTCCTCAACGACTTGGCAT 60.036 55.000 0.00 0.00 0.00 4.40
2928 3038 1.363744 CTCCTCAACGACTTGGCATC 58.636 55.000 0.00 0.00 0.00 3.91
2929 3039 0.389817 TCCTCAACGACTTGGCATCG 60.390 55.000 8.83 8.83 45.17 3.84
2934 3044 3.486263 CGACTTGGCATCGTTCCC 58.514 61.111 2.42 0.00 34.84 3.97
2935 3045 2.106683 CGACTTGGCATCGTTCCCC 61.107 63.158 2.42 0.00 34.84 4.81
2936 3046 1.002624 GACTTGGCATCGTTCCCCA 60.003 57.895 0.00 0.00 0.00 4.96
2937 3047 1.303317 ACTTGGCATCGTTCCCCAC 60.303 57.895 0.00 0.00 0.00 4.61
2946 3056 2.741211 GTTCCCCACGAAGGCGAC 60.741 66.667 0.00 0.00 41.64 5.19
2947 3057 3.235481 TTCCCCACGAAGGCGACA 61.235 61.111 0.00 0.00 41.64 4.35
2948 3058 3.524648 TTCCCCACGAAGGCGACAC 62.525 63.158 0.00 0.00 41.64 3.67
2949 3059 4.308458 CCCCACGAAGGCGACACA 62.308 66.667 0.00 0.00 41.64 3.72
2950 3060 2.047274 CCCACGAAGGCGACACAT 60.047 61.111 0.00 0.00 41.64 3.21
2951 3061 2.390599 CCCACGAAGGCGACACATG 61.391 63.158 0.00 0.00 41.64 3.21
2952 3062 1.374125 CCACGAAGGCGACACATGA 60.374 57.895 0.00 0.00 41.64 3.07
2953 3063 1.626654 CCACGAAGGCGACACATGAC 61.627 60.000 0.00 0.00 41.64 3.06
2954 3064 1.374252 ACGAAGGCGACACATGACC 60.374 57.895 0.00 0.00 41.64 4.02
2955 3065 1.079819 CGAAGGCGACACATGACCT 60.080 57.895 0.00 0.00 40.82 3.85
2956 3066 1.078759 CGAAGGCGACACATGACCTC 61.079 60.000 0.00 0.00 40.82 3.85
2957 3067 0.037326 GAAGGCGACACATGACCTCA 60.037 55.000 0.00 0.00 0.00 3.86
2958 3068 0.320771 AAGGCGACACATGACCTCAC 60.321 55.000 0.00 0.00 0.00 3.51
2959 3069 1.005037 GGCGACACATGACCTCACA 60.005 57.895 0.00 0.00 0.00 3.58
2960 3070 1.291877 GGCGACACATGACCTCACAC 61.292 60.000 0.00 0.00 0.00 3.82
2961 3071 0.599991 GCGACACATGACCTCACACA 60.600 55.000 0.00 0.00 0.00 3.72
2962 3072 1.864565 CGACACATGACCTCACACAA 58.135 50.000 0.00 0.00 0.00 3.33
2963 3073 2.416747 CGACACATGACCTCACACAAT 58.583 47.619 0.00 0.00 0.00 2.71
2964 3074 2.158254 CGACACATGACCTCACACAATG 59.842 50.000 0.00 0.00 0.00 2.82
2965 3075 3.141398 GACACATGACCTCACACAATGT 58.859 45.455 0.00 0.00 0.00 2.71
2976 3086 2.839486 ACACAATGTGACGAGATGGT 57.161 45.000 21.34 0.00 36.96 3.55
2977 3087 2.688507 ACACAATGTGACGAGATGGTC 58.311 47.619 21.34 0.00 36.96 4.02
2978 3088 2.002586 CACAATGTGACGAGATGGTCC 58.997 52.381 7.78 0.00 35.23 4.46
2979 3089 1.902508 ACAATGTGACGAGATGGTCCT 59.097 47.619 0.00 0.00 36.07 3.85
2980 3090 2.303022 ACAATGTGACGAGATGGTCCTT 59.697 45.455 0.00 0.00 36.07 3.36
2981 3091 2.674852 CAATGTGACGAGATGGTCCTTG 59.325 50.000 0.00 0.00 36.07 3.61
2982 3092 1.338107 TGTGACGAGATGGTCCTTGT 58.662 50.000 0.00 0.00 36.07 3.16
2983 3093 1.000843 TGTGACGAGATGGTCCTTGTG 59.999 52.381 0.00 0.00 36.07 3.33
2984 3094 0.037326 TGACGAGATGGTCCTTGTGC 60.037 55.000 0.00 0.00 36.07 4.57
2985 3095 0.741221 GACGAGATGGTCCTTGTGCC 60.741 60.000 0.00 0.00 31.19 5.01
2986 3096 1.194781 ACGAGATGGTCCTTGTGCCT 61.195 55.000 0.00 0.00 29.93 4.75
2987 3097 0.824109 CGAGATGGTCCTTGTGCCTA 59.176 55.000 0.00 0.00 0.00 3.93
2988 3098 1.471676 CGAGATGGTCCTTGTGCCTAC 60.472 57.143 0.00 0.00 0.00 3.18
2989 3099 1.555075 GAGATGGTCCTTGTGCCTACA 59.445 52.381 0.00 0.00 34.31 2.74
2990 3100 1.556911 AGATGGTCCTTGTGCCTACAG 59.443 52.381 0.00 0.00 38.23 2.74
2991 3101 1.555075 GATGGTCCTTGTGCCTACAGA 59.445 52.381 0.00 0.00 38.23 3.41
2992 3102 0.685097 TGGTCCTTGTGCCTACAGAC 59.315 55.000 0.00 0.00 38.23 3.51
2993 3103 0.389948 GGTCCTTGTGCCTACAGACG 60.390 60.000 0.00 0.00 38.23 4.18
2994 3104 0.601558 GTCCTTGTGCCTACAGACGA 59.398 55.000 0.00 0.00 38.23 4.20
2995 3105 0.601558 TCCTTGTGCCTACAGACGAC 59.398 55.000 0.00 0.00 38.23 4.34
2996 3106 0.317160 CCTTGTGCCTACAGACGACA 59.683 55.000 0.00 0.00 38.23 4.35
2997 3107 1.419374 CTTGTGCCTACAGACGACAC 58.581 55.000 0.00 0.00 38.23 3.67
2998 3108 0.318360 TTGTGCCTACAGACGACACG 60.318 55.000 0.00 0.00 38.23 4.49
2999 3109 1.443872 GTGCCTACAGACGACACGG 60.444 63.158 0.00 0.00 0.00 4.94
3000 3110 1.900016 TGCCTACAGACGACACGGT 60.900 57.895 0.00 0.00 0.00 4.83
3001 3111 0.606130 TGCCTACAGACGACACGGTA 60.606 55.000 0.00 0.00 0.00 4.02
3002 3112 0.737219 GCCTACAGACGACACGGTAT 59.263 55.000 0.00 0.00 0.00 2.73
3003 3113 1.533338 GCCTACAGACGACACGGTATG 60.533 57.143 0.00 0.00 35.35 2.39
3013 3123 3.824621 CACGGTATGTGTGCCTACA 57.175 52.632 0.00 0.00 43.88 2.74
3014 3124 1.640428 CACGGTATGTGTGCCTACAG 58.360 55.000 0.00 0.00 43.88 2.74
3015 3125 1.203758 CACGGTATGTGTGCCTACAGA 59.796 52.381 0.00 0.00 43.88 3.41
3016 3126 2.108168 ACGGTATGTGTGCCTACAGAT 58.892 47.619 0.00 0.00 42.71 2.90
3017 3127 2.500098 ACGGTATGTGTGCCTACAGATT 59.500 45.455 0.00 0.00 40.78 2.40
3018 3128 3.055385 ACGGTATGTGTGCCTACAGATTT 60.055 43.478 0.00 0.00 40.78 2.17
3019 3129 4.160814 ACGGTATGTGTGCCTACAGATTTA 59.839 41.667 0.00 0.00 40.78 1.40
3020 3130 4.745125 CGGTATGTGTGCCTACAGATTTAG 59.255 45.833 0.00 0.00 40.78 1.85
3021 3131 5.057149 GGTATGTGTGCCTACAGATTTAGG 58.943 45.833 0.00 0.00 40.78 2.69
3022 3132 4.844349 ATGTGTGCCTACAGATTTAGGT 57.156 40.909 0.00 0.00 37.51 3.08
3023 3133 4.634012 TGTGTGCCTACAGATTTAGGTT 57.366 40.909 0.00 0.00 40.91 3.50
3024 3134 4.980573 TGTGTGCCTACAGATTTAGGTTT 58.019 39.130 0.00 0.00 40.91 3.27
3025 3135 4.759693 TGTGTGCCTACAGATTTAGGTTTG 59.240 41.667 0.00 0.00 40.91 2.93
3026 3136 5.001232 GTGTGCCTACAGATTTAGGTTTGA 58.999 41.667 0.00 0.00 40.91 2.69
3027 3137 5.648092 GTGTGCCTACAGATTTAGGTTTGAT 59.352 40.000 0.00 0.00 40.91 2.57
3028 3138 5.647658 TGTGCCTACAGATTTAGGTTTGATG 59.352 40.000 0.00 0.00 40.91 3.07
3029 3139 5.880332 GTGCCTACAGATTTAGGTTTGATGA 59.120 40.000 0.00 0.00 40.91 2.92
3030 3140 5.880332 TGCCTACAGATTTAGGTTTGATGAC 59.120 40.000 0.00 0.00 40.91 3.06
3031 3141 5.006746 GCCTACAGATTTAGGTTTGATGACG 59.993 44.000 0.00 0.00 40.91 4.35
3032 3142 6.338146 CCTACAGATTTAGGTTTGATGACGA 58.662 40.000 0.00 0.00 34.84 4.20
3033 3143 6.477033 CCTACAGATTTAGGTTTGATGACGAG 59.523 42.308 0.00 0.00 34.84 4.18
3034 3144 5.178797 ACAGATTTAGGTTTGATGACGAGG 58.821 41.667 0.00 0.00 0.00 4.63
3035 3145 4.034510 CAGATTTAGGTTTGATGACGAGGC 59.965 45.833 0.00 0.00 0.00 4.70
3036 3146 3.410631 TTTAGGTTTGATGACGAGGCA 57.589 42.857 0.00 0.00 0.00 4.75
3037 3147 3.627395 TTAGGTTTGATGACGAGGCAT 57.373 42.857 0.00 0.00 0.00 4.40
3038 3148 2.496899 AGGTTTGATGACGAGGCATT 57.503 45.000 0.00 0.00 0.00 3.56
3039 3149 2.359900 AGGTTTGATGACGAGGCATTC 58.640 47.619 0.00 0.00 0.00 2.67
3040 3150 2.083774 GGTTTGATGACGAGGCATTCA 58.916 47.619 0.00 0.00 0.00 2.57
3041 3151 2.096496 GGTTTGATGACGAGGCATTCAG 59.904 50.000 0.00 0.00 0.00 3.02
3042 3152 1.372582 TTGATGACGAGGCATTCAGC 58.627 50.000 0.00 0.00 44.65 4.26
3052 3162 1.226491 GCATTCAGCATCACACCGC 60.226 57.895 0.00 0.00 44.79 5.68
3053 3163 1.430632 CATTCAGCATCACACCGCC 59.569 57.895 0.00 0.00 0.00 6.13
3054 3164 1.002257 ATTCAGCATCACACCGCCA 60.002 52.632 0.00 0.00 0.00 5.69
3055 3165 1.308069 ATTCAGCATCACACCGCCAC 61.308 55.000 0.00 0.00 0.00 5.01
3056 3166 3.434319 CAGCATCACACCGCCACC 61.434 66.667 0.00 0.00 0.00 4.61
3057 3167 3.640407 AGCATCACACCGCCACCT 61.640 61.111 0.00 0.00 0.00 4.00
3058 3168 3.127533 GCATCACACCGCCACCTC 61.128 66.667 0.00 0.00 0.00 3.85
3059 3169 2.665000 CATCACACCGCCACCTCT 59.335 61.111 0.00 0.00 0.00 3.69
3060 3170 1.448540 CATCACACCGCCACCTCTC 60.449 63.158 0.00 0.00 0.00 3.20
3061 3171 1.610673 ATCACACCGCCACCTCTCT 60.611 57.895 0.00 0.00 0.00 3.10
3062 3172 1.892819 ATCACACCGCCACCTCTCTG 61.893 60.000 0.00 0.00 0.00 3.35
3063 3173 4.008933 ACACCGCCACCTCTCTGC 62.009 66.667 0.00 0.00 0.00 4.26
3064 3174 3.699894 CACCGCCACCTCTCTGCT 61.700 66.667 0.00 0.00 0.00 4.24
3065 3175 3.699894 ACCGCCACCTCTCTGCTG 61.700 66.667 0.00 0.00 0.00 4.41
3068 3178 4.792804 GCCACCTCTCTGCTGCCC 62.793 72.222 0.00 0.00 0.00 5.36
3069 3179 3.324930 CCACCTCTCTGCTGCCCA 61.325 66.667 0.00 0.00 0.00 5.36
3070 3180 2.752358 CACCTCTCTGCTGCCCAA 59.248 61.111 0.00 0.00 0.00 4.12
3071 3181 1.376942 CACCTCTCTGCTGCCCAAG 60.377 63.158 0.00 0.00 0.00 3.61
3086 3196 5.323371 TGCCCAAGCATCAATTAACTAAC 57.677 39.130 0.00 0.00 46.52 2.34
3087 3197 4.769488 TGCCCAAGCATCAATTAACTAACA 59.231 37.500 0.00 0.00 46.52 2.41
3088 3198 5.421693 TGCCCAAGCATCAATTAACTAACAT 59.578 36.000 0.00 0.00 46.52 2.71
3089 3199 5.979517 GCCCAAGCATCAATTAACTAACATC 59.020 40.000 0.00 0.00 39.53 3.06
3090 3200 6.405731 GCCCAAGCATCAATTAACTAACATCA 60.406 38.462 0.00 0.00 39.53 3.07
3091 3201 7.546358 CCCAAGCATCAATTAACTAACATCAA 58.454 34.615 0.00 0.00 0.00 2.57
3092 3202 7.489113 CCCAAGCATCAATTAACTAACATCAAC 59.511 37.037 0.00 0.00 0.00 3.18
3093 3203 7.489113 CCAAGCATCAATTAACTAACATCAACC 59.511 37.037 0.00 0.00 0.00 3.77
3094 3204 7.944729 AGCATCAATTAACTAACATCAACCT 57.055 32.000 0.00 0.00 0.00 3.50
3095 3205 8.353423 AGCATCAATTAACTAACATCAACCTT 57.647 30.769 0.00 0.00 0.00 3.50
3096 3206 9.461312 AGCATCAATTAACTAACATCAACCTTA 57.539 29.630 0.00 0.00 0.00 2.69
3103 3213 9.959721 ATTAACTAACATCAACCTTATGTGAGT 57.040 29.630 1.14 1.14 46.62 3.41
3105 3215 7.672983 ACTAACATCAACCTTATGTGAGTTG 57.327 36.000 1.14 0.00 43.62 3.16
3106 3216 5.376854 AACATCAACCTTATGTGAGTTGC 57.623 39.130 0.00 0.00 40.51 4.17
3107 3217 4.397420 ACATCAACCTTATGTGAGTTGCA 58.603 39.130 0.00 0.00 40.51 4.08
3108 3218 4.456911 ACATCAACCTTATGTGAGTTGCAG 59.543 41.667 0.00 0.00 40.51 4.41
3109 3219 3.411446 TCAACCTTATGTGAGTTGCAGG 58.589 45.455 0.00 0.00 40.51 4.85
3110 3220 2.489329 CAACCTTATGTGAGTTGCAGGG 59.511 50.000 0.00 0.00 34.98 4.45
3111 3221 1.985159 ACCTTATGTGAGTTGCAGGGA 59.015 47.619 0.00 0.00 0.00 4.20
3112 3222 2.026822 ACCTTATGTGAGTTGCAGGGAG 60.027 50.000 0.00 0.00 0.00 4.30
3113 3223 2.237143 CCTTATGTGAGTTGCAGGGAGA 59.763 50.000 0.00 0.00 0.00 3.71
3114 3224 3.118112 CCTTATGTGAGTTGCAGGGAGAT 60.118 47.826 0.00 0.00 0.00 2.75
3115 3225 2.706339 ATGTGAGTTGCAGGGAGATC 57.294 50.000 0.00 0.00 0.00 2.75
3116 3226 0.615331 TGTGAGTTGCAGGGAGATCC 59.385 55.000 0.00 0.00 0.00 3.36
3117 3227 0.615331 GTGAGTTGCAGGGAGATCCA 59.385 55.000 0.47 0.00 38.24 3.41
3118 3228 1.211457 GTGAGTTGCAGGGAGATCCAT 59.789 52.381 0.47 0.00 38.24 3.41
3129 3239 5.549347 CAGGGAGATCCATGCATATATAGC 58.451 45.833 0.00 0.00 41.16 2.97
3131 3241 5.071519 AGGGAGATCCATGCATATATAGCAC 59.928 44.000 0.00 0.00 45.95 4.40
3132 3242 4.987285 GGAGATCCATGCATATATAGCACG 59.013 45.833 0.00 4.71 45.95 5.34
3133 3243 4.953667 AGATCCATGCATATATAGCACGG 58.046 43.478 12.95 12.95 46.06 4.94
3134 3244 4.406972 AGATCCATGCATATATAGCACGGT 59.593 41.667 16.46 8.47 45.02 4.83
3135 3245 4.551702 TCCATGCATATATAGCACGGTT 57.448 40.909 16.46 1.01 45.02 4.44
3136 3246 5.669164 TCCATGCATATATAGCACGGTTA 57.331 39.130 16.46 2.66 45.02 2.85
3137 3247 5.660460 TCCATGCATATATAGCACGGTTAG 58.340 41.667 16.46 4.31 45.02 2.34
3138 3248 4.811024 CCATGCATATATAGCACGGTTAGG 59.189 45.833 0.00 0.00 45.95 2.69
3139 3249 4.465632 TGCATATATAGCACGGTTAGGG 57.534 45.455 5.94 0.00 37.02 3.53
3145 3255 3.060000 GCACGGTTAGGGCCCAAC 61.060 66.667 27.56 24.12 45.50 3.77
3146 3256 2.432563 CACGGTTAGGGCCCAACA 59.567 61.111 27.56 5.42 0.00 3.33
3147 3257 1.228306 CACGGTTAGGGCCCAACAA 60.228 57.895 27.56 12.30 0.00 2.83
3148 3258 1.228337 ACGGTTAGGGCCCAACAAC 60.228 57.895 27.56 23.07 0.00 3.32
3149 3259 1.228306 CGGTTAGGGCCCAACAACA 60.228 57.895 27.56 0.00 0.00 3.33
3150 3260 0.824182 CGGTTAGGGCCCAACAACAA 60.824 55.000 27.56 4.64 0.00 2.83
3151 3261 1.415200 GGTTAGGGCCCAACAACAAA 58.585 50.000 27.56 3.09 0.00 2.83
3152 3262 1.763545 GGTTAGGGCCCAACAACAAAA 59.236 47.619 27.56 1.56 0.00 2.44
3153 3263 2.370519 GGTTAGGGCCCAACAACAAAAT 59.629 45.455 27.56 0.25 0.00 1.82
3154 3264 3.579151 GGTTAGGGCCCAACAACAAAATA 59.421 43.478 27.56 0.00 0.00 1.40
3155 3265 4.561938 GGTTAGGGCCCAACAACAAAATAC 60.562 45.833 27.56 7.14 0.00 1.89
3156 3266 2.970987 AGGGCCCAACAACAAAATACT 58.029 42.857 27.56 0.00 0.00 2.12
3157 3267 3.313791 AGGGCCCAACAACAAAATACTT 58.686 40.909 27.56 0.00 0.00 2.24
3158 3268 3.070878 AGGGCCCAACAACAAAATACTTG 59.929 43.478 27.56 0.00 0.00 3.16
3159 3269 3.070302 GGGCCCAACAACAAAATACTTGA 59.930 43.478 19.95 0.00 0.00 3.02
3160 3270 4.306600 GGCCCAACAACAAAATACTTGAG 58.693 43.478 0.00 0.00 0.00 3.02
3161 3271 4.038642 GGCCCAACAACAAAATACTTGAGA 59.961 41.667 0.00 0.00 0.00 3.27
3162 3272 5.279456 GGCCCAACAACAAAATACTTGAGAT 60.279 40.000 0.00 0.00 0.00 2.75
3163 3273 5.634859 GCCCAACAACAAAATACTTGAGATG 59.365 40.000 0.00 0.00 0.00 2.90
3164 3274 6.738453 GCCCAACAACAAAATACTTGAGATGT 60.738 38.462 0.00 0.00 0.00 3.06
3165 3275 6.642131 CCCAACAACAAAATACTTGAGATGTG 59.358 38.462 0.00 0.00 0.00 3.21
3166 3276 6.642131 CCAACAACAAAATACTTGAGATGTGG 59.358 38.462 0.00 0.00 0.00 4.17
3167 3277 7.424803 CAACAACAAAATACTTGAGATGTGGA 58.575 34.615 0.00 0.00 0.00 4.02
3168 3278 7.765695 ACAACAAAATACTTGAGATGTGGAT 57.234 32.000 0.00 0.00 0.00 3.41
3169 3279 7.596494 ACAACAAAATACTTGAGATGTGGATG 58.404 34.615 0.00 0.00 0.00 3.51
3170 3280 7.231317 ACAACAAAATACTTGAGATGTGGATGT 59.769 33.333 0.00 0.00 0.00 3.06
3171 3281 7.149569 ACAAAATACTTGAGATGTGGATGTG 57.850 36.000 0.00 0.00 0.00 3.21
3172 3282 5.824904 AAATACTTGAGATGTGGATGTGC 57.175 39.130 0.00 0.00 0.00 4.57
3173 3283 2.865119 ACTTGAGATGTGGATGTGCA 57.135 45.000 0.00 0.00 0.00 4.57
3174 3284 2.708051 ACTTGAGATGTGGATGTGCAG 58.292 47.619 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.562973 GCATGTGGTGGACTATCTGAATG 59.437 47.826 0.00 0.00 0.00 2.67
90 91 0.620030 AGCATGCATGTGGTGGACTA 59.380 50.000 26.79 0.00 0.00 2.59
131 132 1.665679 GTGTGCCACGTGGATGAATAG 59.334 52.381 38.30 9.38 37.39 1.73
139 140 0.175760 ATAGCTAGTGTGCCACGTGG 59.824 55.000 30.66 30.66 39.64 4.94
163 164 4.752101 GCCACATATCACTAGATGGTTGTC 59.248 45.833 0.00 0.00 35.67 3.18
277 280 6.610741 TTTATGGTGATGTTTTGTTTTGCC 57.389 33.333 0.00 0.00 0.00 4.52
325 328 9.651913 GGATGAATACAAACATGTTTACCAATT 57.348 29.630 22.87 17.74 0.00 2.32
326 329 8.811017 TGGATGAATACAAACATGTTTACCAAT 58.189 29.630 22.87 12.02 0.00 3.16
396 399 3.127030 GGCTTTGCACCAGTACTTGATAC 59.873 47.826 0.08 0.00 0.00 2.24
457 460 2.747446 GGCGGTGAGTCATGTATTTTGT 59.253 45.455 0.00 0.00 0.00 2.83
467 470 3.509137 GACAACGGGCGGTGAGTCA 62.509 63.158 19.27 0.00 36.12 3.41
544 547 7.998383 TGTCCACTAGTTGGCATGAATAAATAT 59.002 33.333 0.00 0.00 46.47 1.28
652 707 4.077108 GGTCGTTGGGTCCTCTTATTTTT 58.923 43.478 0.00 0.00 0.00 1.94
657 712 0.115745 AGGGTCGTTGGGTCCTCTTA 59.884 55.000 0.00 0.00 0.00 2.10
663 718 0.899720 TCATGTAGGGTCGTTGGGTC 59.100 55.000 0.00 0.00 0.00 4.46
720 775 4.697352 AGTTGTCTACTGAATGGCATTGTC 59.303 41.667 19.07 4.68 35.19 3.18
727 782 4.696877 TGCAATGAGTTGTCTACTGAATGG 59.303 41.667 0.00 0.00 37.17 3.16
801 856 1.955778 TCAGCATTTGGTTGTCCACTG 59.044 47.619 0.00 0.00 44.22 3.66
802 857 1.956477 GTCAGCATTTGGTTGTCCACT 59.044 47.619 0.00 0.00 44.22 4.00
904 959 5.806818 TGGGGTCAACATTTATAGTTTCGA 58.193 37.500 0.00 0.00 0.00 3.71
908 963 4.649218 GGCATGGGGTCAACATTTATAGTT 59.351 41.667 0.00 0.00 0.00 2.24
966 1021 3.305335 GGTGGTTTTCAACGATGATGCTT 60.305 43.478 0.00 0.00 34.96 3.91
975 1030 2.333581 GCCGGGTGGTTTTCAACG 59.666 61.111 2.18 0.00 37.67 4.10
994 1049 1.686052 GGAAGTGGTTGGCATTGTGAA 59.314 47.619 0.00 0.00 0.00 3.18
1035 1090 2.110213 TTCCAAAGCTCGGCGTGT 59.890 55.556 6.85 0.00 0.00 4.49
1071 1126 0.392998 ACTCGAGCGCCATGGATTTT 60.393 50.000 18.40 0.00 0.00 1.82
1108 1163 2.750237 GTGGATGGCGGTGGGAAC 60.750 66.667 0.00 0.00 0.00 3.62
1178 1233 3.096092 AGGTAGGACTTCTTGCTCTCAG 58.904 50.000 0.00 0.00 0.00 3.35
1185 1240 1.751924 CGAGGGAGGTAGGACTTCTTG 59.248 57.143 0.00 0.00 0.00 3.02
1230 1285 4.141779 GGGACATCAACCGTAAAGATACCT 60.142 45.833 0.00 0.00 0.00 3.08
1259 1314 1.001248 ACCTTAGCGCACTCCCCTA 59.999 57.895 11.47 0.00 0.00 3.53
1275 1330 0.981943 AGGTACTAGTTGCACCCACC 59.018 55.000 9.31 5.31 36.02 4.61
1297 1352 5.067413 GGAGATAAGATAACGGTGTGAGACA 59.933 44.000 0.00 0.00 0.00 3.41
1407 1462 2.437359 GAGAAGTGCATGGCCGCT 60.437 61.111 0.00 0.00 0.00 5.52
1684 1739 7.548967 AGGTCTAGAACTAAGCACTTAATGTC 58.451 38.462 9.06 0.00 0.00 3.06
1697 1752 4.851639 ACGTTAGGGAGGTCTAGAACTA 57.148 45.455 11.14 0.00 0.00 2.24
1749 1804 5.339008 TCATGTCACCTACAATGTACTCC 57.661 43.478 0.00 0.00 42.70 3.85
1815 1871 4.379339 TCACCCAAAACAAACTTAGTGC 57.621 40.909 0.00 0.00 0.00 4.40
1860 1918 6.164176 ACTGTAGCCAACACTAACATAAGTC 58.836 40.000 0.00 0.00 33.45 3.01
1869 1927 5.234752 CAACACATACTGTAGCCAACACTA 58.765 41.667 0.00 0.00 33.45 2.74
1988 2046 1.003233 GATTTGGAAGGACACCCGACT 59.997 52.381 0.00 0.00 37.58 4.18
1996 2054 5.467035 TTTGAACATGGATTTGGAAGGAC 57.533 39.130 0.00 0.00 0.00 3.85
2003 2061 3.681593 TGGGCTTTGAACATGGATTTG 57.318 42.857 0.00 0.00 0.00 2.32
2037 2095 3.353370 TGTCATCACCATCATCAGCAA 57.647 42.857 0.00 0.00 0.00 3.91
2060 2118 1.294780 CTCTTCACGCTCCTTGCCT 59.705 57.895 0.00 0.00 38.78 4.75
2101 2159 0.605319 GTCGTTGAACCCTGCATCCA 60.605 55.000 0.00 0.00 0.00 3.41
2116 2174 1.000955 CAGGCCTTGTCTTGTAGTCGT 59.999 52.381 0.00 0.00 0.00 4.34
2118 2176 2.841442 ACAGGCCTTGTCTTGTAGTC 57.159 50.000 0.00 0.00 33.87 2.59
2205 2263 2.868964 TACTGGCTTCACCCCTATCT 57.131 50.000 0.00 0.00 37.83 1.98
2208 2266 4.445735 GCATTTATACTGGCTTCACCCCTA 60.446 45.833 0.00 0.00 37.83 3.53
2225 2288 6.252995 AGAAGGTGAACCCATTAAGCATTTA 58.747 36.000 0.00 0.00 36.42 1.40
2226 2289 5.086621 AGAAGGTGAACCCATTAAGCATTT 58.913 37.500 0.00 0.00 36.42 2.32
2227 2290 4.677182 AGAAGGTGAACCCATTAAGCATT 58.323 39.130 0.00 0.00 36.42 3.56
2228 2291 4.273318 GAGAAGGTGAACCCATTAAGCAT 58.727 43.478 0.00 0.00 36.42 3.79
2229 2292 3.561313 GGAGAAGGTGAACCCATTAAGCA 60.561 47.826 0.00 0.00 36.42 3.91
2230 2293 3.017442 GGAGAAGGTGAACCCATTAAGC 58.983 50.000 0.00 0.00 36.42 3.09
2231 2294 4.301072 TGGAGAAGGTGAACCCATTAAG 57.699 45.455 0.00 0.00 36.42 1.85
2232 2295 4.290985 TGATGGAGAAGGTGAACCCATTAA 59.709 41.667 0.00 0.00 37.71 1.40
2233 2296 3.849574 TGATGGAGAAGGTGAACCCATTA 59.150 43.478 0.00 0.00 37.71 1.90
2234 2297 2.649312 TGATGGAGAAGGTGAACCCATT 59.351 45.455 0.00 0.00 37.71 3.16
2235 2298 2.278245 TGATGGAGAAGGTGAACCCAT 58.722 47.619 0.00 0.00 40.05 4.00
2236 2299 1.741028 TGATGGAGAAGGTGAACCCA 58.259 50.000 0.00 0.00 36.42 4.51
2237 2300 2.820197 GTTTGATGGAGAAGGTGAACCC 59.180 50.000 0.00 0.00 36.42 4.11
2238 2301 3.756117 AGTTTGATGGAGAAGGTGAACC 58.244 45.455 0.00 0.00 0.00 3.62
2239 2302 6.127897 CCAATAGTTTGATGGAGAAGGTGAAC 60.128 42.308 0.00 0.00 36.27 3.18
2240 2303 5.945784 CCAATAGTTTGATGGAGAAGGTGAA 59.054 40.000 0.00 0.00 36.27 3.18
2241 2304 5.500234 CCAATAGTTTGATGGAGAAGGTGA 58.500 41.667 0.00 0.00 36.27 4.02
2242 2305 4.641989 CCCAATAGTTTGATGGAGAAGGTG 59.358 45.833 0.00 0.00 36.27 4.00
2243 2306 4.292306 ACCCAATAGTTTGATGGAGAAGGT 59.708 41.667 0.00 0.00 36.27 3.50
2244 2307 4.860022 ACCCAATAGTTTGATGGAGAAGG 58.140 43.478 0.00 0.00 36.27 3.46
2245 2308 5.500234 TGACCCAATAGTTTGATGGAGAAG 58.500 41.667 0.00 0.00 36.27 2.85
2246 2309 5.512942 TGACCCAATAGTTTGATGGAGAA 57.487 39.130 0.00 0.00 36.27 2.87
2247 2310 5.014123 AGTTGACCCAATAGTTTGATGGAGA 59.986 40.000 0.00 0.00 36.27 3.71
2248 2311 5.256474 AGTTGACCCAATAGTTTGATGGAG 58.744 41.667 0.00 0.00 36.27 3.86
2249 2312 5.222027 TGAGTTGACCCAATAGTTTGATGGA 60.222 40.000 0.00 0.00 36.27 3.41
2250 2313 5.009631 TGAGTTGACCCAATAGTTTGATGG 58.990 41.667 0.00 0.00 34.60 3.51
2251 2314 6.573664 TTGAGTTGACCCAATAGTTTGATG 57.426 37.500 0.00 0.00 34.60 3.07
2252 2315 7.781324 ATTTGAGTTGACCCAATAGTTTGAT 57.219 32.000 0.00 0.00 34.60 2.57
2253 2316 8.698973 TTATTTGAGTTGACCCAATAGTTTGA 57.301 30.769 0.00 0.00 34.60 2.69
2254 2317 9.410556 CTTTATTTGAGTTGACCCAATAGTTTG 57.589 33.333 0.00 0.00 0.00 2.93
2255 2318 9.362151 TCTTTATTTGAGTTGACCCAATAGTTT 57.638 29.630 0.00 0.00 0.00 2.66
2256 2319 8.934023 TCTTTATTTGAGTTGACCCAATAGTT 57.066 30.769 0.00 0.00 0.00 2.24
2319 2382 2.025131 TCCATCATGCTGAACCCATTGA 60.025 45.455 0.00 0.00 0.00 2.57
2344 2407 1.440618 TAAACTCTGTGGCCAAGGGA 58.559 50.000 7.24 5.09 0.00 4.20
2354 2417 6.016360 TGTGCATAGCAACAATTAAACTCTGT 60.016 34.615 0.00 0.00 41.47 3.41
2361 2424 6.589523 GGACAAATGTGCATAGCAACAATTAA 59.410 34.615 0.00 0.00 41.47 1.40
2372 2435 5.337410 CCATGAAAAGGGACAAATGTGCATA 60.337 40.000 7.37 0.00 38.19 3.14
2386 2449 6.271488 TCAATGAAACTAGCCATGAAAAGG 57.729 37.500 0.00 0.00 0.00 3.11
2467 2561 3.376859 TGTGAACACGTCTCATTGCTTTT 59.623 39.130 0.45 0.00 0.00 2.27
2468 2562 2.942376 TGTGAACACGTCTCATTGCTTT 59.058 40.909 0.45 0.00 0.00 3.51
2469 2563 2.560504 TGTGAACACGTCTCATTGCTT 58.439 42.857 0.45 0.00 0.00 3.91
2470 2564 2.238942 TGTGAACACGTCTCATTGCT 57.761 45.000 0.45 0.00 0.00 3.91
2471 2565 3.332761 TTTGTGAACACGTCTCATTGC 57.667 42.857 0.45 0.00 30.10 3.56
2472 2566 6.228273 ACTATTTGTGAACACGTCTCATTG 57.772 37.500 0.45 0.00 30.10 2.82
2473 2567 7.956420 TTACTATTTGTGAACACGTCTCATT 57.044 32.000 0.45 0.00 30.10 2.57
2474 2568 7.117812 CCTTTACTATTTGTGAACACGTCTCAT 59.882 37.037 0.45 0.00 30.10 2.90
2475 2569 6.422701 CCTTTACTATTTGTGAACACGTCTCA 59.577 38.462 0.00 0.00 0.00 3.27
2476 2570 6.643770 TCCTTTACTATTTGTGAACACGTCTC 59.356 38.462 0.00 0.00 0.00 3.36
2477 2571 6.518493 TCCTTTACTATTTGTGAACACGTCT 58.482 36.000 0.00 0.00 0.00 4.18
2478 2572 6.774354 TCCTTTACTATTTGTGAACACGTC 57.226 37.500 0.00 0.00 0.00 4.34
2479 2573 7.556733 TTTCCTTTACTATTTGTGAACACGT 57.443 32.000 0.57 0.00 0.00 4.49
2484 2578 8.745590 GCCCTATTTTCCTTTACTATTTGTGAA 58.254 33.333 0.00 0.00 0.00 3.18
2485 2579 8.113462 AGCCCTATTTTCCTTTACTATTTGTGA 58.887 33.333 0.00 0.00 0.00 3.58
2486 2580 8.293699 AGCCCTATTTTCCTTTACTATTTGTG 57.706 34.615 0.00 0.00 0.00 3.33
2487 2581 8.749354 CAAGCCCTATTTTCCTTTACTATTTGT 58.251 33.333 0.00 0.00 0.00 2.83
2488 2582 8.966868 TCAAGCCCTATTTTCCTTTACTATTTG 58.033 33.333 0.00 0.00 0.00 2.32
2553 2652 9.667107 ATCATTGCTTCTTCAATCATTCAATTT 57.333 25.926 0.00 0.00 34.68 1.82
2602 2701 6.716628 TCTGTCAGGTATCATTGCTTCTTTTT 59.283 34.615 0.00 0.00 0.00 1.94
2607 2706 4.507710 TGTCTGTCAGGTATCATTGCTTC 58.492 43.478 0.00 0.00 0.00 3.86
2608 2707 4.558226 TGTCTGTCAGGTATCATTGCTT 57.442 40.909 0.00 0.00 0.00 3.91
2620 2719 5.205759 TGCCATCATAGTATGTCTGTCAG 57.794 43.478 9.94 0.00 0.00 3.51
2623 2722 5.933617 ACATTGCCATCATAGTATGTCTGT 58.066 37.500 9.94 2.74 0.00 3.41
2626 2725 5.615544 GCGAACATTGCCATCATAGTATGTC 60.616 44.000 9.94 0.00 0.00 3.06
2670 2769 3.096461 CGGACACTTATTCTACGTGACG 58.904 50.000 2.24 2.24 33.13 4.35
2672 2771 4.771590 AACGGACACTTATTCTACGTGA 57.228 40.909 0.00 0.00 33.03 4.35
2714 2824 4.921515 GGAATCGCTTCATATACGCACTTA 59.078 41.667 0.92 0.00 32.70 2.24
2715 2825 3.741344 GGAATCGCTTCATATACGCACTT 59.259 43.478 0.92 0.00 32.70 3.16
2716 2826 3.243737 TGGAATCGCTTCATATACGCACT 60.244 43.478 0.92 0.00 32.70 4.40
2717 2827 3.057019 TGGAATCGCTTCATATACGCAC 58.943 45.455 0.92 0.00 32.70 5.34
2718 2828 3.317150 CTGGAATCGCTTCATATACGCA 58.683 45.455 0.92 0.00 32.70 5.24
2720 2830 3.914312 ACCTGGAATCGCTTCATATACG 58.086 45.455 0.00 0.00 32.70 3.06
2721 2831 5.345202 CGTAACCTGGAATCGCTTCATATAC 59.655 44.000 0.00 0.00 32.70 1.47
2724 2834 3.131577 ACGTAACCTGGAATCGCTTCATA 59.868 43.478 0.00 0.00 32.70 2.15
2725 2835 2.093658 ACGTAACCTGGAATCGCTTCAT 60.094 45.455 0.00 0.00 32.70 2.57
2726 2836 1.274167 ACGTAACCTGGAATCGCTTCA 59.726 47.619 0.00 0.00 32.70 3.02
2727 2837 1.659098 CACGTAACCTGGAATCGCTTC 59.341 52.381 0.00 0.00 0.00 3.86
2728 2838 1.274167 TCACGTAACCTGGAATCGCTT 59.726 47.619 0.00 0.00 0.00 4.68
2729 2839 0.892755 TCACGTAACCTGGAATCGCT 59.107 50.000 0.00 0.00 0.00 4.93
2730 2840 1.135199 TCTCACGTAACCTGGAATCGC 60.135 52.381 0.00 0.00 0.00 4.58
2731 2841 2.921754 GTTCTCACGTAACCTGGAATCG 59.078 50.000 0.00 4.20 0.00 3.34
2732 2842 3.927142 CAGTTCTCACGTAACCTGGAATC 59.073 47.826 0.00 0.00 0.00 2.52
2733 2843 3.323979 ACAGTTCTCACGTAACCTGGAAT 59.676 43.478 0.00 0.00 0.00 3.01
2734 2844 2.696707 ACAGTTCTCACGTAACCTGGAA 59.303 45.455 0.00 0.00 0.00 3.53
2735 2845 2.313317 ACAGTTCTCACGTAACCTGGA 58.687 47.619 0.00 0.00 0.00 3.86
2736 2846 2.814280 ACAGTTCTCACGTAACCTGG 57.186 50.000 0.00 0.00 0.00 4.45
2737 2847 5.526115 TCTAAACAGTTCTCACGTAACCTG 58.474 41.667 0.00 0.00 0.00 4.00
2738 2848 5.779529 TCTAAACAGTTCTCACGTAACCT 57.220 39.130 0.00 0.00 0.00 3.50
2739 2849 6.833342 TTTCTAAACAGTTCTCACGTAACC 57.167 37.500 0.00 0.00 0.00 2.85
2763 2873 2.116827 TGACCTGGTCACGTGTTTTT 57.883 45.000 25.12 0.00 37.67 1.94
2764 2874 1.946768 CATGACCTGGTCACGTGTTTT 59.053 47.619 30.50 11.22 45.65 2.43
2765 2875 1.593196 CATGACCTGGTCACGTGTTT 58.407 50.000 30.50 11.98 45.65 2.83
2766 2876 0.884704 GCATGACCTGGTCACGTGTT 60.885 55.000 30.50 12.73 45.65 3.32
2767 2877 1.301716 GCATGACCTGGTCACGTGT 60.302 57.895 30.50 13.12 45.65 4.49
2768 2878 2.382746 CGCATGACCTGGTCACGTG 61.383 63.158 30.50 25.16 45.65 4.49
2769 2879 2.048222 CGCATGACCTGGTCACGT 60.048 61.111 30.50 14.27 45.65 4.49
2770 2880 2.048222 ACGCATGACCTGGTCACG 60.048 61.111 30.50 29.02 45.65 4.35
2771 2881 2.680913 GCACGCATGACCTGGTCAC 61.681 63.158 30.50 18.08 45.65 3.67
2772 2882 2.358615 GCACGCATGACCTGGTCA 60.359 61.111 30.08 30.08 46.90 4.02
2773 2883 2.046892 AGCACGCATGACCTGGTC 60.047 61.111 19.96 19.96 0.00 4.02
2774 2884 2.046892 GAGCACGCATGACCTGGT 60.047 61.111 0.00 0.00 0.00 4.00
2775 2885 1.434622 GATGAGCACGCATGACCTGG 61.435 60.000 0.00 0.00 0.00 4.45
2776 2886 1.759293 CGATGAGCACGCATGACCTG 61.759 60.000 0.00 0.00 0.00 4.00
2777 2887 1.520120 CGATGAGCACGCATGACCT 60.520 57.895 0.00 0.00 0.00 3.85
2778 2888 3.009140 CGATGAGCACGCATGACC 58.991 61.111 0.00 0.00 0.00 4.02
2789 2899 0.671472 TTGCTCTGTGGTGCGATGAG 60.671 55.000 0.00 0.00 35.02 2.90
2790 2900 0.250252 TTTGCTCTGTGGTGCGATGA 60.250 50.000 0.00 0.00 35.02 2.92
2791 2901 0.167470 CTTTGCTCTGTGGTGCGATG 59.833 55.000 0.00 0.00 35.02 3.84
2792 2902 0.250467 ACTTTGCTCTGTGGTGCGAT 60.250 50.000 0.00 0.00 35.02 4.58
2793 2903 0.880278 GACTTTGCTCTGTGGTGCGA 60.880 55.000 0.00 0.00 35.02 5.10
2794 2904 1.571460 GACTTTGCTCTGTGGTGCG 59.429 57.895 0.00 0.00 35.02 5.34
2795 2905 1.518903 GGGACTTTGCTCTGTGGTGC 61.519 60.000 0.00 0.00 0.00 5.01
2796 2906 0.890996 GGGGACTTTGCTCTGTGGTG 60.891 60.000 0.00 0.00 0.00 4.17
2797 2907 1.456287 GGGGACTTTGCTCTGTGGT 59.544 57.895 0.00 0.00 0.00 4.16
2798 2908 1.672356 CGGGGACTTTGCTCTGTGG 60.672 63.158 0.00 0.00 0.00 4.17
2799 2909 2.328099 GCGGGGACTTTGCTCTGTG 61.328 63.158 0.00 0.00 0.00 3.66
2800 2910 2.032681 GCGGGGACTTTGCTCTGT 59.967 61.111 0.00 0.00 0.00 3.41
2801 2911 2.747855 GGCGGGGACTTTGCTCTG 60.748 66.667 0.00 0.00 0.00 3.35
2802 2912 4.035102 GGGCGGGGACTTTGCTCT 62.035 66.667 0.00 0.00 0.00 4.09
2806 2916 4.426313 GGAGGGGCGGGGACTTTG 62.426 72.222 0.00 0.00 0.00 2.77
2807 2917 2.776053 TAAGGAGGGGCGGGGACTTT 62.776 60.000 0.00 0.00 0.00 2.66
2808 2918 2.562973 ATAAGGAGGGGCGGGGACTT 62.563 60.000 0.00 0.00 0.00 3.01
2809 2919 3.036045 ATAAGGAGGGGCGGGGACT 62.036 63.158 0.00 0.00 0.00 3.85
2810 2920 2.447959 ATAAGGAGGGGCGGGGAC 60.448 66.667 0.00 0.00 0.00 4.46
2811 2921 2.447765 CATAAGGAGGGGCGGGGA 60.448 66.667 0.00 0.00 0.00 4.81
2812 2922 2.447765 TCATAAGGAGGGGCGGGG 60.448 66.667 0.00 0.00 0.00 5.73
2813 2923 1.345715 AAGTCATAAGGAGGGGCGGG 61.346 60.000 0.00 0.00 0.00 6.13
2814 2924 0.179045 CAAGTCATAAGGAGGGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
2815 2925 0.179045 CCAAGTCATAAGGAGGGGCG 60.179 60.000 0.00 0.00 0.00 6.13
2816 2926 0.466372 GCCAAGTCATAAGGAGGGGC 60.466 60.000 0.00 0.00 32.20 5.80
2817 2927 0.183731 GGCCAAGTCATAAGGAGGGG 59.816 60.000 0.00 0.00 0.00 4.79
2818 2928 0.183731 GGGCCAAGTCATAAGGAGGG 59.816 60.000 4.39 0.00 0.00 4.30
2819 2929 0.918983 TGGGCCAAGTCATAAGGAGG 59.081 55.000 2.13 0.00 0.00 4.30
2820 2930 2.579873 CATGGGCCAAGTCATAAGGAG 58.420 52.381 11.89 0.00 0.00 3.69
2821 2931 1.410083 GCATGGGCCAAGTCATAAGGA 60.410 52.381 11.89 0.00 0.00 3.36
2822 2932 1.035139 GCATGGGCCAAGTCATAAGG 58.965 55.000 11.89 0.00 0.00 2.69
2834 2944 1.907807 TGACCTTGTTGGCATGGGC 60.908 57.895 0.00 2.15 45.43 5.36
2835 2945 1.535204 GGTGACCTTGTTGGCATGGG 61.535 60.000 0.00 0.00 42.37 4.00
2836 2946 0.827089 TGGTGACCTTGTTGGCATGG 60.827 55.000 2.11 0.00 43.34 3.66
2837 2947 0.314935 GTGGTGACCTTGTTGGCATG 59.685 55.000 2.11 0.00 40.22 4.06
2838 2948 0.827507 GGTGGTGACCTTGTTGGCAT 60.828 55.000 2.11 0.00 39.47 4.40
2839 2949 1.454847 GGTGGTGACCTTGTTGGCA 60.455 57.895 2.11 0.00 39.47 4.92
2840 2950 2.551912 CGGTGGTGACCTTGTTGGC 61.552 63.158 2.11 0.00 40.58 4.52
2841 2951 1.153046 ACGGTGGTGACCTTGTTGG 60.153 57.895 2.11 0.00 40.58 3.77
2842 2952 1.164041 GGACGGTGGTGACCTTGTTG 61.164 60.000 2.11 0.00 40.58 3.33
2843 2953 1.147600 GGACGGTGGTGACCTTGTT 59.852 57.895 2.11 0.00 40.58 2.83
2844 2954 2.826702 GGACGGTGGTGACCTTGT 59.173 61.111 2.11 0.00 40.58 3.16
2845 2955 2.357034 CGGACGGTGGTGACCTTG 60.357 66.667 2.11 0.00 40.58 3.61
2846 2956 4.309950 GCGGACGGTGGTGACCTT 62.310 66.667 2.11 0.00 40.58 3.50
2848 2958 4.309950 AAGCGGACGGTGGTGACC 62.310 66.667 0.00 0.00 39.14 4.02
2849 2959 2.424705 TACAAGCGGACGGTGGTGAC 62.425 60.000 13.62 0.00 31.57 3.67
2850 2960 2.201708 TACAAGCGGACGGTGGTGA 61.202 57.895 13.62 0.00 31.57 4.02
2851 2961 2.025418 GTACAAGCGGACGGTGGTG 61.025 63.158 13.62 4.32 31.57 4.17
2852 2962 2.205152 AGTACAAGCGGACGGTGGT 61.205 57.895 9.05 9.05 33.89 4.16
2853 2963 1.736645 CAGTACAAGCGGACGGTGG 60.737 63.158 0.00 0.00 0.00 4.61
2854 2964 0.108804 ATCAGTACAAGCGGACGGTG 60.109 55.000 0.00 0.00 0.00 4.94
2855 2965 0.108804 CATCAGTACAAGCGGACGGT 60.109 55.000 0.00 0.00 0.00 4.83
2856 2966 0.806102 CCATCAGTACAAGCGGACGG 60.806 60.000 0.00 0.00 0.00 4.79
2857 2967 0.806102 CCCATCAGTACAAGCGGACG 60.806 60.000 0.00 0.00 0.00 4.79
2858 2968 0.535335 TCCCATCAGTACAAGCGGAC 59.465 55.000 0.00 0.00 0.00 4.79
2859 2969 0.824109 CTCCCATCAGTACAAGCGGA 59.176 55.000 0.00 0.00 0.00 5.54
2860 2970 0.179073 CCTCCCATCAGTACAAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
2861 2971 0.824109 TCCTCCCATCAGTACAAGCG 59.176 55.000 0.00 0.00 0.00 4.68
2862 2972 3.567478 ATTCCTCCCATCAGTACAAGC 57.433 47.619 0.00 0.00 0.00 4.01
2863 2973 4.408921 TGGTATTCCTCCCATCAGTACAAG 59.591 45.833 0.00 0.00 34.23 3.16
2864 2974 4.367166 TGGTATTCCTCCCATCAGTACAA 58.633 43.478 0.00 0.00 34.23 2.41
2865 2975 4.002256 TGGTATTCCTCCCATCAGTACA 57.998 45.455 0.00 0.00 34.23 2.90
2866 2976 4.654262 TCTTGGTATTCCTCCCATCAGTAC 59.346 45.833 0.00 0.00 34.23 2.73
2867 2977 4.890988 TCTTGGTATTCCTCCCATCAGTA 58.109 43.478 0.00 0.00 34.23 2.74
2868 2978 3.736094 TCTTGGTATTCCTCCCATCAGT 58.264 45.455 0.00 0.00 34.23 3.41
2869 2979 4.989875 ATCTTGGTATTCCTCCCATCAG 57.010 45.455 0.00 0.00 34.23 2.90
2870 2980 5.399038 GGAAATCTTGGTATTCCTCCCATCA 60.399 44.000 0.00 0.00 39.60 3.07
2871 2981 5.073428 GGAAATCTTGGTATTCCTCCCATC 58.927 45.833 0.00 0.00 39.60 3.51
2872 2982 4.140924 GGGAAATCTTGGTATTCCTCCCAT 60.141 45.833 6.32 0.00 41.86 4.00
2873 2983 3.204382 GGGAAATCTTGGTATTCCTCCCA 59.796 47.826 6.32 0.00 41.86 4.37
2874 2984 3.204382 TGGGAAATCTTGGTATTCCTCCC 59.796 47.826 4.63 4.63 41.86 4.30
2875 2985 4.519906 TGGGAAATCTTGGTATTCCTCC 57.480 45.455 4.01 0.00 41.86 4.30
2876 2986 5.360999 CCTTTGGGAAATCTTGGTATTCCTC 59.639 44.000 4.01 0.00 41.86 3.71
2877 2987 5.272402 CCTTTGGGAAATCTTGGTATTCCT 58.728 41.667 4.01 0.00 41.86 3.36
2878 2988 5.598416 CCTTTGGGAAATCTTGGTATTCC 57.402 43.478 0.00 0.00 41.53 3.01
2900 3010 1.966451 CGTTGAGGAGGGTTGCACC 60.966 63.158 0.00 0.00 37.60 5.01
2901 3011 1.070786 TCGTTGAGGAGGGTTGCAC 59.929 57.895 0.00 0.00 0.00 4.57
2902 3012 1.070786 GTCGTTGAGGAGGGTTGCA 59.929 57.895 0.00 0.00 0.00 4.08
2903 3013 0.250338 AAGTCGTTGAGGAGGGTTGC 60.250 55.000 0.00 0.00 0.00 4.17
2904 3014 1.512926 CAAGTCGTTGAGGAGGGTTG 58.487 55.000 0.00 0.00 35.46 3.77
2905 3015 0.396811 CCAAGTCGTTGAGGAGGGTT 59.603 55.000 0.00 0.00 35.46 4.11
2906 3016 2.058675 CCAAGTCGTTGAGGAGGGT 58.941 57.895 0.00 0.00 35.46 4.34
2907 3017 1.376037 GCCAAGTCGTTGAGGAGGG 60.376 63.158 0.00 0.00 35.46 4.30
2908 3018 0.036010 ATGCCAAGTCGTTGAGGAGG 60.036 55.000 0.00 0.00 35.46 4.30
2909 3019 1.363744 GATGCCAAGTCGTTGAGGAG 58.636 55.000 0.00 0.00 35.46 3.69
2910 3020 0.389817 CGATGCCAAGTCGTTGAGGA 60.390 55.000 0.00 0.00 35.46 3.71
2911 3021 2.081526 CGATGCCAAGTCGTTGAGG 58.918 57.895 0.00 0.00 35.46 3.86
2917 3027 2.106683 GGGGAACGATGCCAAGTCG 61.107 63.158 5.42 0.00 44.26 4.18
2918 3028 1.002624 TGGGGAACGATGCCAAGTC 60.003 57.895 5.42 0.00 39.19 3.01
2919 3029 1.303317 GTGGGGAACGATGCCAAGT 60.303 57.895 5.42 0.00 39.19 3.16
2920 3030 3.590824 GTGGGGAACGATGCCAAG 58.409 61.111 5.42 0.00 39.19 3.61
2933 3043 2.047274 ATGTGTCGCCTTCGTGGG 60.047 61.111 0.05 0.00 36.96 4.61
2934 3044 1.374125 TCATGTGTCGCCTTCGTGG 60.374 57.895 0.00 0.00 36.96 4.94
2935 3045 1.626654 GGTCATGTGTCGCCTTCGTG 61.627 60.000 0.00 0.00 36.96 4.35
2936 3046 1.374252 GGTCATGTGTCGCCTTCGT 60.374 57.895 0.00 0.00 36.96 3.85
2937 3047 1.078759 GAGGTCATGTGTCGCCTTCG 61.079 60.000 0.00 0.00 0.00 3.79
2938 3048 0.037326 TGAGGTCATGTGTCGCCTTC 60.037 55.000 0.00 0.00 0.00 3.46
2939 3049 0.320771 GTGAGGTCATGTGTCGCCTT 60.321 55.000 0.00 0.00 0.00 4.35
2940 3050 1.293498 GTGAGGTCATGTGTCGCCT 59.707 57.895 0.00 0.00 0.00 5.52
2941 3051 1.005037 TGTGAGGTCATGTGTCGCC 60.005 57.895 0.00 0.00 0.00 5.54
2942 3052 0.599991 TGTGTGAGGTCATGTGTCGC 60.600 55.000 0.00 0.00 0.00 5.19
2943 3053 1.864565 TTGTGTGAGGTCATGTGTCG 58.135 50.000 0.00 0.00 0.00 4.35
2944 3054 3.141398 ACATTGTGTGAGGTCATGTGTC 58.859 45.455 0.00 0.00 0.00 3.67
2945 3055 3.213206 ACATTGTGTGAGGTCATGTGT 57.787 42.857 0.00 0.00 0.00 3.72
2957 3067 2.612972 GGACCATCTCGTCACATTGTGT 60.613 50.000 16.06 0.00 34.79 3.72
2958 3068 2.002586 GGACCATCTCGTCACATTGTG 58.997 52.381 10.64 10.64 34.24 3.33
2959 3069 1.902508 AGGACCATCTCGTCACATTGT 59.097 47.619 0.00 0.00 34.24 2.71
2960 3070 2.674852 CAAGGACCATCTCGTCACATTG 59.325 50.000 0.00 0.00 34.24 2.82
2961 3071 2.303022 ACAAGGACCATCTCGTCACATT 59.697 45.455 0.00 0.00 34.24 2.71
2962 3072 1.902508 ACAAGGACCATCTCGTCACAT 59.097 47.619 0.00 0.00 34.24 3.21
2963 3073 1.000843 CACAAGGACCATCTCGTCACA 59.999 52.381 0.00 0.00 34.24 3.58
2964 3074 1.714794 CACAAGGACCATCTCGTCAC 58.285 55.000 0.00 0.00 34.24 3.67
2965 3075 0.037326 GCACAAGGACCATCTCGTCA 60.037 55.000 0.00 0.00 34.24 4.35
2966 3076 0.741221 GGCACAAGGACCATCTCGTC 60.741 60.000 0.00 0.00 0.00 4.20
2967 3077 1.194781 AGGCACAAGGACCATCTCGT 61.195 55.000 0.00 0.00 0.00 4.18
2968 3078 0.824109 TAGGCACAAGGACCATCTCG 59.176 55.000 0.00 0.00 0.00 4.04
2969 3079 1.555075 TGTAGGCACAAGGACCATCTC 59.445 52.381 0.00 0.00 0.00 2.75
2970 3080 1.556911 CTGTAGGCACAAGGACCATCT 59.443 52.381 0.00 0.00 33.22 2.90
2971 3081 1.555075 TCTGTAGGCACAAGGACCATC 59.445 52.381 0.00 0.00 33.22 3.51
2972 3082 1.279271 GTCTGTAGGCACAAGGACCAT 59.721 52.381 0.00 0.00 33.22 3.55
2973 3083 0.685097 GTCTGTAGGCACAAGGACCA 59.315 55.000 0.00 0.00 33.22 4.02
2974 3084 0.389948 CGTCTGTAGGCACAAGGACC 60.390 60.000 0.00 0.00 33.22 4.46
2975 3085 0.601558 TCGTCTGTAGGCACAAGGAC 59.398 55.000 0.00 0.00 33.22 3.85
2976 3086 0.601558 GTCGTCTGTAGGCACAAGGA 59.398 55.000 0.00 0.00 33.22 3.36
2977 3087 0.317160 TGTCGTCTGTAGGCACAAGG 59.683 55.000 0.00 0.00 33.22 3.61
2978 3088 1.419374 GTGTCGTCTGTAGGCACAAG 58.581 55.000 5.35 0.00 33.22 3.16
2979 3089 0.318360 CGTGTCGTCTGTAGGCACAA 60.318 55.000 9.55 0.00 33.22 3.33
2980 3090 1.284715 CGTGTCGTCTGTAGGCACA 59.715 57.895 9.55 0.00 0.00 4.57
2981 3091 1.443872 CCGTGTCGTCTGTAGGCAC 60.444 63.158 0.00 1.14 0.00 5.01
2982 3092 0.606130 TACCGTGTCGTCTGTAGGCA 60.606 55.000 0.00 0.00 0.00 4.75
2983 3093 0.737219 ATACCGTGTCGTCTGTAGGC 59.263 55.000 0.00 0.00 0.00 3.93
2984 3094 1.741706 ACATACCGTGTCGTCTGTAGG 59.258 52.381 0.00 0.00 35.77 3.18
2985 3095 2.782163 CACATACCGTGTCGTCTGTAG 58.218 52.381 0.00 0.00 39.62 2.74
2986 3096 2.905959 CACATACCGTGTCGTCTGTA 57.094 50.000 0.00 0.00 39.62 2.74
2987 3097 3.786809 CACATACCGTGTCGTCTGT 57.213 52.632 0.00 0.00 39.62 3.41
2996 3106 1.552578 TCTGTAGGCACACATACCGT 58.447 50.000 0.00 0.00 0.00 4.83
2997 3107 2.890808 ATCTGTAGGCACACATACCG 57.109 50.000 0.00 0.00 0.00 4.02
2998 3108 5.057149 CCTAAATCTGTAGGCACACATACC 58.943 45.833 0.00 0.00 34.50 2.73
2999 3109 5.671493 ACCTAAATCTGTAGGCACACATAC 58.329 41.667 0.00 0.00 44.05 2.39
3000 3110 5.950544 ACCTAAATCTGTAGGCACACATA 57.049 39.130 0.00 0.00 44.05 2.29
3001 3111 4.844349 ACCTAAATCTGTAGGCACACAT 57.156 40.909 0.00 0.00 44.05 3.21
3002 3112 4.634012 AACCTAAATCTGTAGGCACACA 57.366 40.909 0.00 0.00 44.05 3.72
3003 3113 5.001232 TCAAACCTAAATCTGTAGGCACAC 58.999 41.667 0.00 0.00 44.05 3.82
3004 3114 5.235850 TCAAACCTAAATCTGTAGGCACA 57.764 39.130 0.00 0.00 44.05 4.57
3005 3115 5.880332 TCATCAAACCTAAATCTGTAGGCAC 59.120 40.000 0.00 0.00 44.05 5.01
3006 3116 5.880332 GTCATCAAACCTAAATCTGTAGGCA 59.120 40.000 0.00 0.00 44.05 4.75
3007 3117 5.006746 CGTCATCAAACCTAAATCTGTAGGC 59.993 44.000 0.00 0.00 44.05 3.93
3008 3118 6.338146 TCGTCATCAAACCTAAATCTGTAGG 58.662 40.000 0.00 0.00 45.47 3.18
3009 3119 6.477033 CCTCGTCATCAAACCTAAATCTGTAG 59.523 42.308 0.00 0.00 0.00 2.74
3010 3120 6.338146 CCTCGTCATCAAACCTAAATCTGTA 58.662 40.000 0.00 0.00 0.00 2.74
3011 3121 5.178797 CCTCGTCATCAAACCTAAATCTGT 58.821 41.667 0.00 0.00 0.00 3.41
3012 3122 4.034510 GCCTCGTCATCAAACCTAAATCTG 59.965 45.833 0.00 0.00 0.00 2.90
3013 3123 4.192317 GCCTCGTCATCAAACCTAAATCT 58.808 43.478 0.00 0.00 0.00 2.40
3014 3124 3.938963 TGCCTCGTCATCAAACCTAAATC 59.061 43.478 0.00 0.00 0.00 2.17
3015 3125 3.950397 TGCCTCGTCATCAAACCTAAAT 58.050 40.909 0.00 0.00 0.00 1.40
3016 3126 3.410631 TGCCTCGTCATCAAACCTAAA 57.589 42.857 0.00 0.00 0.00 1.85
3017 3127 3.627395 ATGCCTCGTCATCAAACCTAA 57.373 42.857 0.00 0.00 0.00 2.69
3018 3128 3.055458 TGAATGCCTCGTCATCAAACCTA 60.055 43.478 0.00 0.00 0.00 3.08
3019 3129 2.290260 TGAATGCCTCGTCATCAAACCT 60.290 45.455 0.00 0.00 0.00 3.50
3020 3130 2.083774 TGAATGCCTCGTCATCAAACC 58.916 47.619 0.00 0.00 0.00 3.27
3021 3131 2.476854 GCTGAATGCCTCGTCATCAAAC 60.477 50.000 0.00 0.00 35.15 2.93
3022 3132 1.739466 GCTGAATGCCTCGTCATCAAA 59.261 47.619 0.00 0.00 35.15 2.69
3023 3133 1.338960 TGCTGAATGCCTCGTCATCAA 60.339 47.619 0.00 0.00 42.00 2.57
3024 3134 0.249955 TGCTGAATGCCTCGTCATCA 59.750 50.000 0.00 0.00 42.00 3.07
3025 3135 1.530293 GATGCTGAATGCCTCGTCATC 59.470 52.381 0.00 0.00 42.00 2.92
3026 3136 1.134310 TGATGCTGAATGCCTCGTCAT 60.134 47.619 0.00 0.00 42.00 3.06
3027 3137 0.249955 TGATGCTGAATGCCTCGTCA 59.750 50.000 0.00 0.00 42.00 4.35
3028 3138 0.654683 GTGATGCTGAATGCCTCGTC 59.345 55.000 0.00 0.00 42.00 4.20
3029 3139 0.036105 TGTGATGCTGAATGCCTCGT 60.036 50.000 0.00 0.00 42.00 4.18
3030 3140 0.376152 GTGTGATGCTGAATGCCTCG 59.624 55.000 0.00 0.00 42.00 4.63
3031 3141 0.737219 GGTGTGATGCTGAATGCCTC 59.263 55.000 0.00 0.00 42.00 4.70
3032 3142 1.028330 CGGTGTGATGCTGAATGCCT 61.028 55.000 0.00 0.00 42.00 4.75
3033 3143 1.430632 CGGTGTGATGCTGAATGCC 59.569 57.895 0.00 0.00 42.00 4.40
3034 3144 1.226491 GCGGTGTGATGCTGAATGC 60.226 57.895 0.00 0.00 43.25 3.56
3035 3145 1.307355 TGGCGGTGTGATGCTGAATG 61.307 55.000 0.00 0.00 0.00 2.67
3036 3146 1.002257 TGGCGGTGTGATGCTGAAT 60.002 52.632 0.00 0.00 0.00 2.57
3037 3147 1.965930 GTGGCGGTGTGATGCTGAA 60.966 57.895 0.00 0.00 0.00 3.02
3038 3148 2.358615 GTGGCGGTGTGATGCTGA 60.359 61.111 0.00 0.00 0.00 4.26
3039 3149 3.434319 GGTGGCGGTGTGATGCTG 61.434 66.667 0.00 0.00 0.00 4.41
3040 3150 3.612247 GAGGTGGCGGTGTGATGCT 62.612 63.158 0.00 0.00 0.00 3.79
3041 3151 3.127533 GAGGTGGCGGTGTGATGC 61.128 66.667 0.00 0.00 0.00 3.91
3042 3152 1.448540 GAGAGGTGGCGGTGTGATG 60.449 63.158 0.00 0.00 0.00 3.07
3043 3153 1.610673 AGAGAGGTGGCGGTGTGAT 60.611 57.895 0.00 0.00 0.00 3.06
3044 3154 2.203640 AGAGAGGTGGCGGTGTGA 60.204 61.111 0.00 0.00 0.00 3.58
3045 3155 2.047844 CAGAGAGGTGGCGGTGTG 60.048 66.667 0.00 0.00 0.00 3.82
3046 3156 4.008933 GCAGAGAGGTGGCGGTGT 62.009 66.667 0.00 0.00 0.00 4.16
3047 3157 3.699894 AGCAGAGAGGTGGCGGTG 61.700 66.667 0.00 0.00 0.00 4.94
3048 3158 3.699894 CAGCAGAGAGGTGGCGGT 61.700 66.667 0.00 0.00 41.98 5.68
3052 3162 2.816601 CTTGGGCAGCAGAGAGGTGG 62.817 65.000 0.00 0.00 45.73 4.61
3054 3164 3.076092 CTTGGGCAGCAGAGAGGT 58.924 61.111 0.00 0.00 0.00 3.85
3065 3175 5.323371 TGTTAGTTAATTGATGCTTGGGC 57.677 39.130 0.00 0.00 39.26 5.36
3066 3176 7.099266 TGATGTTAGTTAATTGATGCTTGGG 57.901 36.000 0.00 0.00 0.00 4.12
3067 3177 7.489113 GGTTGATGTTAGTTAATTGATGCTTGG 59.511 37.037 0.00 0.00 0.00 3.61
3068 3178 8.246180 AGGTTGATGTTAGTTAATTGATGCTTG 58.754 33.333 0.00 0.00 0.00 4.01
3069 3179 8.353423 AGGTTGATGTTAGTTAATTGATGCTT 57.647 30.769 0.00 0.00 0.00 3.91
3070 3180 7.944729 AGGTTGATGTTAGTTAATTGATGCT 57.055 32.000 0.00 0.00 0.00 3.79
3077 3187 9.959721 ACTCACATAAGGTTGATGTTAGTTAAT 57.040 29.630 0.00 0.00 38.14 1.40
3078 3188 9.787435 AACTCACATAAGGTTGATGTTAGTTAA 57.213 29.630 11.64 0.00 44.26 2.01
3079 3189 9.214957 CAACTCACATAAGGTTGATGTTAGTTA 57.785 33.333 12.52 0.00 44.27 2.24
3080 3190 7.308589 GCAACTCACATAAGGTTGATGTTAGTT 60.309 37.037 8.73 8.73 45.76 2.24
3081 3191 6.149474 GCAACTCACATAAGGTTGATGTTAGT 59.851 38.462 8.88 0.00 41.36 2.24
3082 3192 6.149308 TGCAACTCACATAAGGTTGATGTTAG 59.851 38.462 8.88 0.00 41.71 2.34
3083 3193 6.000840 TGCAACTCACATAAGGTTGATGTTA 58.999 36.000 8.88 0.00 41.71 2.41
3084 3194 4.826733 TGCAACTCACATAAGGTTGATGTT 59.173 37.500 8.88 0.00 41.71 2.71
3085 3195 4.397420 TGCAACTCACATAAGGTTGATGT 58.603 39.130 8.88 0.00 41.71 3.06
3086 3196 4.142534 CCTGCAACTCACATAAGGTTGATG 60.143 45.833 8.88 1.54 41.71 3.07
3087 3197 4.012374 CCTGCAACTCACATAAGGTTGAT 58.988 43.478 8.88 0.00 41.71 2.57
3088 3198 3.411446 CCTGCAACTCACATAAGGTTGA 58.589 45.455 8.88 0.00 41.71 3.18
3089 3199 2.489329 CCCTGCAACTCACATAAGGTTG 59.511 50.000 0.00 0.00 41.96 3.77
3090 3200 2.375174 TCCCTGCAACTCACATAAGGTT 59.625 45.455 0.00 0.00 0.00 3.50
3091 3201 1.985159 TCCCTGCAACTCACATAAGGT 59.015 47.619 0.00 0.00 0.00 3.50
3092 3202 2.237143 TCTCCCTGCAACTCACATAAGG 59.763 50.000 0.00 0.00 0.00 2.69
3093 3203 3.616956 TCTCCCTGCAACTCACATAAG 57.383 47.619 0.00 0.00 0.00 1.73
3094 3204 3.118261 GGATCTCCCTGCAACTCACATAA 60.118 47.826 0.00 0.00 0.00 1.90
3095 3205 2.435805 GGATCTCCCTGCAACTCACATA 59.564 50.000 0.00 0.00 0.00 2.29
3096 3206 1.211457 GGATCTCCCTGCAACTCACAT 59.789 52.381 0.00 0.00 0.00 3.21
3097 3207 0.615331 GGATCTCCCTGCAACTCACA 59.385 55.000 0.00 0.00 0.00 3.58
3098 3208 0.615331 TGGATCTCCCTGCAACTCAC 59.385 55.000 0.00 0.00 35.38 3.51
3099 3209 1.211212 CATGGATCTCCCTGCAACTCA 59.789 52.381 0.00 0.00 35.38 3.41
3100 3210 1.964552 CATGGATCTCCCTGCAACTC 58.035 55.000 0.00 0.00 35.38 3.01
3106 3216 5.071384 TGCTATATATGCATGGATCTCCCTG 59.929 44.000 10.16 0.00 35.31 4.45
3107 3217 5.071519 GTGCTATATATGCATGGATCTCCCT 59.928 44.000 10.16 0.00 42.69 4.20
3108 3218 5.303971 GTGCTATATATGCATGGATCTCCC 58.696 45.833 10.16 0.00 42.69 4.30
3109 3219 4.987285 CGTGCTATATATGCATGGATCTCC 59.013 45.833 10.16 0.00 42.69 3.71
3116 3226 4.811024 CCCTAACCGTGCTATATATGCATG 59.189 45.833 10.16 16.28 44.42 4.06
3117 3227 4.683400 GCCCTAACCGTGCTATATATGCAT 60.683 45.833 3.79 3.79 42.69 3.96
3118 3228 3.369052 GCCCTAACCGTGCTATATATGCA 60.369 47.826 0.00 0.00 38.19 3.96
3119 3229 3.195661 GCCCTAACCGTGCTATATATGC 58.804 50.000 0.00 0.00 0.00 3.14
3120 3230 3.431766 GGGCCCTAACCGTGCTATATATG 60.432 52.174 17.04 0.00 0.00 1.78
3121 3231 2.770232 GGGCCCTAACCGTGCTATATAT 59.230 50.000 17.04 0.00 0.00 0.86
3122 3232 2.181975 GGGCCCTAACCGTGCTATATA 58.818 52.381 17.04 0.00 0.00 0.86
3123 3233 0.981943 GGGCCCTAACCGTGCTATAT 59.018 55.000 17.04 0.00 0.00 0.86
3124 3234 0.398806 TGGGCCCTAACCGTGCTATA 60.399 55.000 25.70 0.00 0.00 1.31
3125 3235 1.276140 TTGGGCCCTAACCGTGCTAT 61.276 55.000 25.70 0.00 0.00 2.97
3126 3236 1.919308 TTGGGCCCTAACCGTGCTA 60.919 57.895 25.70 0.00 0.00 3.49
3127 3237 3.253838 TTGGGCCCTAACCGTGCT 61.254 61.111 25.70 0.00 0.00 4.40
3128 3238 3.060000 GTTGGGCCCTAACCGTGC 61.060 66.667 25.70 0.00 0.00 5.34
3129 3239 1.228306 TTGTTGGGCCCTAACCGTG 60.228 57.895 25.70 0.00 0.00 4.94
3130 3240 1.228337 GTTGTTGGGCCCTAACCGT 60.228 57.895 25.70 0.00 0.00 4.83
3131 3241 0.824182 TTGTTGTTGGGCCCTAACCG 60.824 55.000 25.70 0.00 0.00 4.44
3132 3242 1.415200 TTTGTTGTTGGGCCCTAACC 58.585 50.000 25.70 13.48 0.00 2.85
3133 3243 3.762407 ATTTTGTTGTTGGGCCCTAAC 57.238 42.857 25.70 23.95 0.00 2.34
3134 3244 4.484912 AGTATTTTGTTGTTGGGCCCTAA 58.515 39.130 25.70 13.11 0.00 2.69
3135 3245 4.120946 AGTATTTTGTTGTTGGGCCCTA 57.879 40.909 25.70 14.07 0.00 3.53
3136 3246 2.970987 AGTATTTTGTTGTTGGGCCCT 58.029 42.857 25.70 0.00 0.00 5.19
3137 3247 3.070302 TCAAGTATTTTGTTGTTGGGCCC 59.930 43.478 17.59 17.59 0.00 5.80
3138 3248 4.038642 TCTCAAGTATTTTGTTGTTGGGCC 59.961 41.667 0.00 0.00 0.00 5.80
3139 3249 5.195001 TCTCAAGTATTTTGTTGTTGGGC 57.805 39.130 0.00 0.00 0.00 5.36
3140 3250 6.642131 CACATCTCAAGTATTTTGTTGTTGGG 59.358 38.462 0.00 0.00 0.00 4.12
3141 3251 6.642131 CCACATCTCAAGTATTTTGTTGTTGG 59.358 38.462 0.00 0.00 0.00 3.77
3142 3252 7.424803 TCCACATCTCAAGTATTTTGTTGTTG 58.575 34.615 0.00 0.00 0.00 3.33
3143 3253 7.581213 TCCACATCTCAAGTATTTTGTTGTT 57.419 32.000 0.00 0.00 0.00 2.83
3144 3254 7.231317 ACATCCACATCTCAAGTATTTTGTTGT 59.769 33.333 0.00 0.00 0.00 3.32
3145 3255 7.539710 CACATCCACATCTCAAGTATTTTGTTG 59.460 37.037 0.00 0.00 0.00 3.33
3146 3256 7.596494 CACATCCACATCTCAAGTATTTTGTT 58.404 34.615 0.00 0.00 0.00 2.83
3147 3257 6.349611 GCACATCCACATCTCAAGTATTTTGT 60.350 38.462 0.00 0.00 0.00 2.83
3148 3258 6.032094 GCACATCCACATCTCAAGTATTTTG 58.968 40.000 0.00 0.00 0.00 2.44
3149 3259 5.711506 TGCACATCCACATCTCAAGTATTTT 59.288 36.000 0.00 0.00 0.00 1.82
3150 3260 5.255687 TGCACATCCACATCTCAAGTATTT 58.744 37.500 0.00 0.00 0.00 1.40
3151 3261 4.847198 TGCACATCCACATCTCAAGTATT 58.153 39.130 0.00 0.00 0.00 1.89
3152 3262 4.449131 CTGCACATCCACATCTCAAGTAT 58.551 43.478 0.00 0.00 0.00 2.12
3153 3263 3.865446 CTGCACATCCACATCTCAAGTA 58.135 45.455 0.00 0.00 0.00 2.24
3154 3264 2.708051 CTGCACATCCACATCTCAAGT 58.292 47.619 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.