Multiple sequence alignment - TraesCS3A01G498300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G498300 chr3A 100.000 4544 0 0 1 4544 724061128 724056585 0.000000e+00 8392.0
1 TraesCS3A01G498300 chr3A 88.404 664 48 17 2950 3598 243092467 243091818 0.000000e+00 773.0
2 TraesCS3A01G498300 chrUn 91.966 3896 196 47 735 4544 45756699 45752835 0.000000e+00 5352.0
3 TraesCS3A01G498300 chrUn 90.870 471 35 3 1 463 45757166 45756696 3.860000e-175 625.0
4 TraesCS3A01G498300 chr3B 88.909 2245 121 56 842 3008 794870757 794868563 0.000000e+00 2649.0
5 TraesCS3A01G498300 chr3B 92.067 1563 88 20 3014 4544 794868512 794866954 0.000000e+00 2167.0
6 TraesCS3A01G498300 chr3B 89.593 663 43 13 2950 3598 753686881 753686231 0.000000e+00 819.0
7 TraesCS3A01G498300 chr3B 92.208 154 12 0 1879 2032 545707436 545707589 7.650000e-53 219.0
8 TraesCS3A01G498300 chr3B 77.288 295 44 11 3597 3883 753686072 753685793 7.870000e-33 152.0
9 TraesCS3A01G498300 chr5A 90.593 691 36 9 1354 2032 149694366 149693693 0.000000e+00 889.0
10 TraesCS3A01G498300 chr5A 89.146 691 47 8 1354 2032 522675817 522675143 0.000000e+00 835.0
11 TraesCS3A01G498300 chr5A 99.286 280 2 0 459 738 650689304 650689583 1.460000e-139 507.0
12 TraesCS3A01G498300 chr5A 76.871 294 43 13 3600 3883 20420616 20420338 4.740000e-30 143.0
13 TraesCS3A01G498300 chr5A 92.727 55 3 1 2036 2090 149693589 149693536 1.360000e-10 78.7
14 TraesCS3A01G498300 chr1A 89.725 691 43 8 1354 2032 565925703 565926377 0.000000e+00 857.0
15 TraesCS3A01G498300 chr1A 94.231 52 2 1 2036 2087 565926481 565926531 1.360000e-10 78.7
16 TraesCS3A01G498300 chr6A 89.001 691 47 8 1354 2032 391627927 391627254 0.000000e+00 828.0
17 TraesCS3A01G498300 chr6A 92.727 55 3 1 2036 2090 391627150 391627097 1.360000e-10 78.7
18 TraesCS3A01G498300 chr3D 89.744 663 41 14 2950 3598 519954490 519955139 0.000000e+00 822.0
19 TraesCS3A01G498300 chr3D 88.688 663 48 14 2950 3598 560863618 560862969 0.000000e+00 784.0
20 TraesCS3A01G498300 chr3D 77.441 297 42 13 3597 3883 519955298 519955579 2.190000e-33 154.0
21 TraesCS3A01G498300 chr3D 77.104 297 43 13 3597 3883 560862810 560862529 1.020000e-31 148.0
22 TraesCS3A01G498300 chr6D 89.442 663 43 14 2950 3598 436880862 436880213 0.000000e+00 811.0
23 TraesCS3A01G498300 chr6D 76.768 297 44 13 3597 3883 436880054 436879773 4.740000e-30 143.0
24 TraesCS3A01G498300 chr5D 89.291 663 43 14 2950 3598 417677376 417678024 0.000000e+00 806.0
25 TraesCS3A01G498300 chr5D 77.104 297 43 13 3597 3883 417678183 417678464 1.020000e-31 148.0
26 TraesCS3A01G498300 chr5B 89.140 663 46 13 2950 3598 651351522 651350872 0.000000e+00 802.0
27 TraesCS3A01G498300 chr5B 98.905 274 3 0 462 735 451177112 451177385 1.470000e-134 490.0
28 TraesCS3A01G498300 chr5B 92.727 55 3 1 2036 2090 663245920 663245867 1.360000e-10 78.7
29 TraesCS3A01G498300 chr7B 88.688 663 49 13 2950 3598 125842345 125842995 0.000000e+00 785.0
30 TraesCS3A01G498300 chr7B 98.540 274 4 0 462 735 81417497 81417770 6.830000e-133 484.0
31 TraesCS3A01G498300 chr7B 77.365 296 42 13 3597 3882 125843154 125843434 7.870000e-33 152.0
32 TraesCS3A01G498300 chr7A 98.925 279 3 0 462 740 660936832 660936554 2.440000e-137 499.0
33 TraesCS3A01G498300 chr2B 99.270 274 2 0 462 735 748596579 748596852 3.160000e-136 496.0
34 TraesCS3A01G498300 chr2A 97.895 285 6 0 453 737 771861122 771861406 1.140000e-135 494.0
35 TraesCS3A01G498300 chr2A 96.271 295 6 3 441 735 650241315 650241026 3.180000e-131 479.0
36 TraesCS3A01G498300 chr1B 97.500 280 7 0 460 739 13966400 13966679 3.180000e-131 479.0
37 TraesCS3A01G498300 chr1B 92.208 154 12 0 1879 2032 37920874 37920721 7.650000e-53 219.0
38 TraesCS3A01G498300 chr1B 92.727 55 3 1 2036 2090 37920617 37920564 1.360000e-10 78.7
39 TraesCS3A01G498300 chr4B 97.143 280 8 0 459 738 479214972 479214693 1.480000e-129 473.0
40 TraesCS3A01G498300 chr6B 92.208 154 12 0 1879 2032 49680334 49680181 7.650000e-53 219.0
41 TraesCS3A01G498300 chr6B 92.727 55 3 1 2036 2090 49680077 49680024 1.360000e-10 78.7
42 TraesCS3A01G498300 chr6B 92.727 55 3 1 2036 2090 522434813 522434760 1.360000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G498300 chr3A 724056585 724061128 4543 True 8392.00 8392 100.0000 1 4544 1 chr3A.!!$R2 4543
1 TraesCS3A01G498300 chr3A 243091818 243092467 649 True 773.00 773 88.4040 2950 3598 1 chr3A.!!$R1 648
2 TraesCS3A01G498300 chrUn 45752835 45757166 4331 True 2988.50 5352 91.4180 1 4544 2 chrUn.!!$R1 4543
3 TraesCS3A01G498300 chr3B 794866954 794870757 3803 True 2408.00 2649 90.4880 842 4544 2 chr3B.!!$R2 3702
4 TraesCS3A01G498300 chr3B 753685793 753686881 1088 True 485.50 819 83.4405 2950 3883 2 chr3B.!!$R1 933
5 TraesCS3A01G498300 chr5A 522675143 522675817 674 True 835.00 835 89.1460 1354 2032 1 chr5A.!!$R2 678
6 TraesCS3A01G498300 chr5A 149693536 149694366 830 True 483.85 889 91.6600 1354 2090 2 chr5A.!!$R3 736
7 TraesCS3A01G498300 chr1A 565925703 565926531 828 False 467.85 857 91.9780 1354 2087 2 chr1A.!!$F1 733
8 TraesCS3A01G498300 chr6A 391627097 391627927 830 True 453.35 828 90.8640 1354 2090 2 chr6A.!!$R1 736
9 TraesCS3A01G498300 chr3D 519954490 519955579 1089 False 488.00 822 83.5925 2950 3883 2 chr3D.!!$F1 933
10 TraesCS3A01G498300 chr3D 560862529 560863618 1089 True 466.00 784 82.8960 2950 3883 2 chr3D.!!$R1 933
11 TraesCS3A01G498300 chr6D 436879773 436880862 1089 True 477.00 811 83.1050 2950 3883 2 chr6D.!!$R1 933
12 TraesCS3A01G498300 chr5D 417677376 417678464 1088 False 477.00 806 83.1975 2950 3883 2 chr5D.!!$F1 933
13 TraesCS3A01G498300 chr5B 651350872 651351522 650 True 802.00 802 89.1400 2950 3598 1 chr5B.!!$R1 648
14 TraesCS3A01G498300 chr7B 125842345 125843434 1089 False 468.50 785 83.0265 2950 3882 2 chr7B.!!$F2 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 743 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19 F
767 776 0.599060 TGGTTTTCGCCCGATTTTCC 59.401 50.000 0.00 0.00 0.00 3.13 F
1761 1822 1.001378 GCGGTTATCATGATTGTGGGC 60.001 52.381 14.65 7.96 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1597 0.320771 ATCTTTTCAGCGACGCCTGT 60.321 50.0 17.79 0.0 34.47 4.00 R
2704 2906 0.470766 TCCCACGTTTTACTGCCTGT 59.529 50.0 0.00 0.0 0.00 4.00 R
3641 4078 0.236711 GGACGAGTCGACGACTGAAA 59.763 55.0 33.68 0.0 43.53 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.528489 AATCCAACTACCAAAGTACATACAAAT 57.472 29.630 0.00 0.00 37.50 2.32
60 61 6.628185 AGAGGATCAAACATCTTTGAATTGC 58.372 36.000 0.00 0.00 46.99 3.56
61 62 5.727434 AGGATCAAACATCTTTGAATTGCC 58.273 37.500 0.00 1.32 46.99 4.52
73 74 6.837992 TCTTTGAATTGCCGTAATAGTGAAC 58.162 36.000 0.00 0.00 0.00 3.18
75 76 3.619483 TGAATTGCCGTAATAGTGAACCG 59.381 43.478 0.00 0.00 0.00 4.44
77 78 1.999048 TGCCGTAATAGTGAACCGTG 58.001 50.000 0.00 0.00 0.00 4.94
80 81 1.404449 CCGTAATAGTGAACCGTGGCA 60.404 52.381 0.00 0.00 0.00 4.92
84 85 1.089481 ATAGTGAACCGTGGCATGCG 61.089 55.000 12.44 0.00 0.00 4.73
100 101 2.634982 TGCGGCAAAGATTGACAATC 57.365 45.000 18.71 18.71 39.16 2.67
116 117 4.104776 GACAATCACGCCAAACATATTGG 58.895 43.478 2.84 2.84 42.37 3.16
118 119 4.702612 ACAATCACGCCAAACATATTGGTA 59.297 37.500 8.84 0.00 41.53 3.25
121 122 3.055021 TCACGCCAAACATATTGGTAGGA 60.055 43.478 8.84 1.99 41.53 2.94
149 150 2.035632 GGTCTAGGCAGCTAGTCATGT 58.964 52.381 0.00 0.00 0.00 3.21
156 157 5.207110 AGGCAGCTAGTCATGTTAGTATG 57.793 43.478 0.00 2.29 0.00 2.39
157 158 4.039730 AGGCAGCTAGTCATGTTAGTATGG 59.960 45.833 0.00 0.00 0.00 2.74
159 160 4.310769 CAGCTAGTCATGTTAGTATGGCC 58.689 47.826 0.00 0.00 33.18 5.36
161 162 4.058817 GCTAGTCATGTTAGTATGGCCAC 58.941 47.826 8.16 0.00 33.18 5.01
183 184 2.942804 TCAATCCAACAACCTTGCTCA 58.057 42.857 0.00 0.00 0.00 4.26
184 185 3.499338 TCAATCCAACAACCTTGCTCAT 58.501 40.909 0.00 0.00 0.00 2.90
193 195 4.327680 ACAACCTTGCTCATAAAGTCTCC 58.672 43.478 0.00 0.00 0.00 3.71
208 210 2.307098 AGTCTCCAAAGAAGGGACCATG 59.693 50.000 0.00 0.00 32.54 3.66
227 229 5.598005 ACCATGGAAGAAGTTGATTTTGTCA 59.402 36.000 21.47 0.00 34.25 3.58
228 230 6.268387 ACCATGGAAGAAGTTGATTTTGTCAT 59.732 34.615 21.47 0.00 36.54 3.06
276 284 9.255304 ACAAACAACACAAATAACCAATATGTC 57.745 29.630 0.00 0.00 0.00 3.06
414 422 0.597568 TGCCGCTTCATCAAAACCTG 59.402 50.000 0.00 0.00 0.00 4.00
417 425 2.094545 GCCGCTTCATCAAAACCTGAAT 60.095 45.455 0.00 0.00 37.67 2.57
431 439 9.567776 TCAAAACCTGAATATTTGTAAGTCTGA 57.432 29.630 0.00 0.00 35.92 3.27
476 485 6.409524 AAATCATTAGGGCATGTACAATGG 57.590 37.500 0.00 0.00 0.00 3.16
477 486 4.518278 TCATTAGGGCATGTACAATGGT 57.482 40.909 0.00 0.00 0.00 3.55
478 487 4.865905 TCATTAGGGCATGTACAATGGTT 58.134 39.130 0.00 0.00 0.00 3.67
479 488 4.644234 TCATTAGGGCATGTACAATGGTTG 59.356 41.667 0.00 0.00 0.00 3.77
480 489 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
481 490 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
482 491 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
483 492 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
484 493 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
485 494 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
486 495 5.221048 GGGCATGTACAATGGTTGATAAGAC 60.221 44.000 0.00 0.00 0.00 3.01
487 496 5.356751 GGCATGTACAATGGTTGATAAGACA 59.643 40.000 0.00 0.00 0.00 3.41
488 497 6.127758 GGCATGTACAATGGTTGATAAGACAA 60.128 38.462 0.00 0.00 0.00 3.18
489 498 7.416664 GGCATGTACAATGGTTGATAAGACAAT 60.417 37.037 0.00 0.00 32.36 2.71
490 499 7.645340 GCATGTACAATGGTTGATAAGACAATC 59.355 37.037 0.00 0.00 32.36 2.67
491 500 8.896744 CATGTACAATGGTTGATAAGACAATCT 58.103 33.333 0.00 0.00 32.76 2.40
492 501 8.862325 TGTACAATGGTTGATAAGACAATCTT 57.138 30.769 0.00 0.00 40.35 2.40
493 502 9.952030 TGTACAATGGTTGATAAGACAATCTTA 57.048 29.630 0.00 0.95 42.49 2.10
508 517 9.678260 AAGACAATCTTATCTTAAGTCTTGCAT 57.322 29.630 1.63 0.00 41.64 3.96
509 518 9.107177 AGACAATCTTATCTTAAGTCTTGCATG 57.893 33.333 1.63 0.00 31.38 4.06
510 519 7.701445 ACAATCTTATCTTAAGTCTTGCATGC 58.299 34.615 11.82 11.82 0.00 4.06
511 520 7.337689 ACAATCTTATCTTAAGTCTTGCATGCA 59.662 33.333 18.46 18.46 0.00 3.96
512 521 7.870509 ATCTTATCTTAAGTCTTGCATGCAA 57.129 32.000 30.12 30.12 0.00 4.08
513 522 7.870509 TCTTATCTTAAGTCTTGCATGCAAT 57.129 32.000 31.96 20.06 35.20 3.56
514 523 8.284945 TCTTATCTTAAGTCTTGCATGCAATT 57.715 30.769 31.96 24.59 35.20 2.32
515 524 8.742777 TCTTATCTTAAGTCTTGCATGCAATTT 58.257 29.630 31.96 25.44 35.20 1.82
518 527 7.686438 TCTTAAGTCTTGCATGCAATTTAGA 57.314 32.000 31.96 25.57 35.20 2.10
519 528 7.755591 TCTTAAGTCTTGCATGCAATTTAGAG 58.244 34.615 31.96 22.88 35.20 2.43
520 529 7.607607 TCTTAAGTCTTGCATGCAATTTAGAGA 59.392 33.333 31.96 24.43 35.20 3.10
521 530 6.770746 AAGTCTTGCATGCAATTTAGAGAT 57.229 33.333 31.96 14.64 35.20 2.75
522 531 6.132791 AGTCTTGCATGCAATTTAGAGATG 57.867 37.500 31.96 17.36 35.20 2.90
523 532 5.884232 AGTCTTGCATGCAATTTAGAGATGA 59.116 36.000 31.96 19.28 35.20 2.92
524 533 5.970023 GTCTTGCATGCAATTTAGAGATGAC 59.030 40.000 31.96 25.31 35.20 3.06
525 534 5.648960 TCTTGCATGCAATTTAGAGATGACA 59.351 36.000 31.96 6.17 35.20 3.58
526 535 5.900865 TGCATGCAATTTAGAGATGACAA 57.099 34.783 20.30 0.00 0.00 3.18
527 536 6.270156 TGCATGCAATTTAGAGATGACAAA 57.730 33.333 20.30 0.00 0.00 2.83
528 537 6.689554 TGCATGCAATTTAGAGATGACAAAA 58.310 32.000 20.30 0.00 0.00 2.44
529 538 7.153315 TGCATGCAATTTAGAGATGACAAAAA 58.847 30.769 20.30 0.00 0.00 1.94
559 568 7.676947 TGTCTACAATGGGTTATATCTTAGCC 58.323 38.462 0.00 0.00 0.00 3.93
560 569 7.512746 TGTCTACAATGGGTTATATCTTAGCCT 59.487 37.037 0.00 0.00 33.15 4.58
561 570 8.376270 GTCTACAATGGGTTATATCTTAGCCTT 58.624 37.037 0.00 0.00 33.15 4.35
562 571 9.610104 TCTACAATGGGTTATATCTTAGCCTTA 57.390 33.333 0.00 0.00 33.15 2.69
565 574 9.117223 ACAATGGGTTATATCTTAGCCTTATCT 57.883 33.333 0.00 0.00 33.15 1.98
566 575 9.965902 CAATGGGTTATATCTTAGCCTTATCTT 57.034 33.333 0.00 0.00 33.15 2.40
568 577 8.736097 TGGGTTATATCTTAGCCTTATCTTCA 57.264 34.615 0.00 0.00 33.15 3.02
569 578 9.166222 TGGGTTATATCTTAGCCTTATCTTCAA 57.834 33.333 0.00 0.00 33.15 2.69
583 592 9.631452 GCCTTATCTTCAATAATTAGCAATTCC 57.369 33.333 0.00 0.00 32.38 3.01
596 605 8.776376 AATTAGCAATTCCTTAAAACATGGTG 57.224 30.769 0.00 0.00 0.00 4.17
597 606 7.531857 TTAGCAATTCCTTAAAACATGGTGA 57.468 32.000 0.00 0.00 0.00 4.02
598 607 6.029346 AGCAATTCCTTAAAACATGGTGAG 57.971 37.500 0.00 0.00 0.00 3.51
599 608 5.774690 AGCAATTCCTTAAAACATGGTGAGA 59.225 36.000 0.00 0.00 0.00 3.27
600 609 5.863935 GCAATTCCTTAAAACATGGTGAGAC 59.136 40.000 0.00 0.00 0.00 3.36
601 610 6.516527 GCAATTCCTTAAAACATGGTGAGACA 60.517 38.462 0.00 0.00 0.00 3.41
602 611 7.432869 CAATTCCTTAAAACATGGTGAGACAA 58.567 34.615 0.00 0.00 0.00 3.18
603 612 7.595819 ATTCCTTAAAACATGGTGAGACAAA 57.404 32.000 0.00 0.00 0.00 2.83
604 613 7.595819 TTCCTTAAAACATGGTGAGACAAAT 57.404 32.000 0.00 0.00 0.00 2.32
605 614 7.595819 TCCTTAAAACATGGTGAGACAAATT 57.404 32.000 0.00 0.00 0.00 1.82
606 615 7.432869 TCCTTAAAACATGGTGAGACAAATTG 58.567 34.615 0.00 0.00 0.00 2.32
607 616 7.069331 TCCTTAAAACATGGTGAGACAAATTGT 59.931 33.333 0.00 0.00 0.00 2.71
608 617 7.169645 CCTTAAAACATGGTGAGACAAATTGTG 59.830 37.037 2.20 0.00 0.00 3.33
609 618 3.648339 ACATGGTGAGACAAATTGTGC 57.352 42.857 2.20 0.00 0.00 4.57
610 619 3.225104 ACATGGTGAGACAAATTGTGCT 58.775 40.909 2.20 0.36 0.00 4.40
611 620 4.397420 ACATGGTGAGACAAATTGTGCTA 58.603 39.130 2.20 0.00 0.00 3.49
612 621 4.826733 ACATGGTGAGACAAATTGTGCTAA 59.173 37.500 2.20 0.00 0.00 3.09
613 622 5.048504 ACATGGTGAGACAAATTGTGCTAAG 60.049 40.000 2.20 0.00 0.00 2.18
614 623 4.713553 TGGTGAGACAAATTGTGCTAAGA 58.286 39.130 2.20 0.00 0.00 2.10
615 624 4.756642 TGGTGAGACAAATTGTGCTAAGAG 59.243 41.667 2.20 0.00 0.00 2.85
616 625 4.997395 GGTGAGACAAATTGTGCTAAGAGA 59.003 41.667 2.20 0.00 0.00 3.10
617 626 5.645497 GGTGAGACAAATTGTGCTAAGAGAT 59.355 40.000 2.20 0.00 0.00 2.75
618 627 6.183360 GGTGAGACAAATTGTGCTAAGAGATC 60.183 42.308 2.20 0.00 0.00 2.75
619 628 6.369890 GTGAGACAAATTGTGCTAAGAGATCA 59.630 38.462 2.20 0.00 0.00 2.92
620 629 7.065563 GTGAGACAAATTGTGCTAAGAGATCAT 59.934 37.037 2.20 0.00 0.00 2.45
621 630 7.279536 TGAGACAAATTGTGCTAAGAGATCATC 59.720 37.037 2.20 0.00 0.00 2.92
622 631 7.337167 AGACAAATTGTGCTAAGAGATCATCT 58.663 34.615 2.20 0.00 41.27 2.90
623 632 7.495279 AGACAAATTGTGCTAAGAGATCATCTC 59.505 37.037 6.55 6.55 43.70 2.75
657 666 9.746457 ATCTTAAATAAGAGAAGACAAGCCTTT 57.254 29.630 8.68 0.00 44.67 3.11
658 667 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
659 668 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
660 669 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
661 670 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
662 671 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
663 672 6.869315 AAGAGAAGACAAGCCTTTTCTTAC 57.131 37.500 5.86 4.42 42.29 2.34
664 673 4.991687 AGAGAAGACAAGCCTTTTCTTACG 59.008 41.667 5.86 0.00 35.01 3.18
665 674 4.957296 AGAAGACAAGCCTTTTCTTACGA 58.043 39.130 5.86 0.00 29.54 3.43
666 675 4.991687 AGAAGACAAGCCTTTTCTTACGAG 59.008 41.667 5.86 0.00 29.54 4.18
667 676 4.338379 AGACAAGCCTTTTCTTACGAGT 57.662 40.909 0.00 0.00 0.00 4.18
668 677 4.704965 AGACAAGCCTTTTCTTACGAGTT 58.295 39.130 0.00 0.00 0.00 3.01
669 678 4.750598 AGACAAGCCTTTTCTTACGAGTTC 59.249 41.667 0.00 0.00 0.00 3.01
670 679 4.704965 ACAAGCCTTTTCTTACGAGTTCT 58.295 39.130 0.00 0.00 0.00 3.01
671 680 4.750598 ACAAGCCTTTTCTTACGAGTTCTC 59.249 41.667 0.00 0.00 0.00 2.87
672 681 4.875561 AGCCTTTTCTTACGAGTTCTCT 57.124 40.909 0.00 0.00 0.00 3.10
673 682 4.811908 AGCCTTTTCTTACGAGTTCTCTC 58.188 43.478 0.00 0.00 37.35 3.20
674 683 4.525100 AGCCTTTTCTTACGAGTTCTCTCT 59.475 41.667 0.00 0.00 38.45 3.10
675 684 4.860352 GCCTTTTCTTACGAGTTCTCTCTC 59.140 45.833 0.00 0.00 38.45 3.20
676 685 5.404096 CCTTTTCTTACGAGTTCTCTCTCC 58.596 45.833 0.00 0.00 38.45 3.71
677 686 5.184287 CCTTTTCTTACGAGTTCTCTCTCCT 59.816 44.000 0.00 0.00 38.45 3.69
678 687 5.883503 TTTCTTACGAGTTCTCTCTCCTC 57.116 43.478 0.00 0.00 38.45 3.71
679 688 3.876341 TCTTACGAGTTCTCTCTCCTCC 58.124 50.000 0.00 0.00 38.45 4.30
680 689 3.263681 TCTTACGAGTTCTCTCTCCTCCA 59.736 47.826 0.00 0.00 38.45 3.86
681 690 1.828979 ACGAGTTCTCTCTCCTCCAC 58.171 55.000 0.00 0.00 38.45 4.02
682 691 1.099689 CGAGTTCTCTCTCCTCCACC 58.900 60.000 0.00 0.00 38.45 4.61
683 692 1.340600 CGAGTTCTCTCTCCTCCACCT 60.341 57.143 0.00 0.00 38.45 4.00
684 693 2.375146 GAGTTCTCTCTCCTCCACCTC 58.625 57.143 0.00 0.00 37.68 3.85
685 694 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
686 695 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
687 696 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
688 697 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
689 698 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
690 699 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
691 700 4.168871 TCTCTCTCCTCCACCTCATCATTA 59.831 45.833 0.00 0.00 0.00 1.90
692 701 4.883759 TCTCTCCTCCACCTCATCATTAA 58.116 43.478 0.00 0.00 0.00 1.40
693 702 5.471424 TCTCTCCTCCACCTCATCATTAAT 58.529 41.667 0.00 0.00 0.00 1.40
694 703 5.541868 TCTCTCCTCCACCTCATCATTAATC 59.458 44.000 0.00 0.00 0.00 1.75
695 704 4.594920 TCTCCTCCACCTCATCATTAATCC 59.405 45.833 0.00 0.00 0.00 3.01
696 705 4.570926 TCCTCCACCTCATCATTAATCCT 58.429 43.478 0.00 0.00 0.00 3.24
697 706 5.726560 TCCTCCACCTCATCATTAATCCTA 58.273 41.667 0.00 0.00 0.00 2.94
698 707 5.544176 TCCTCCACCTCATCATTAATCCTAC 59.456 44.000 0.00 0.00 0.00 3.18
699 708 5.468540 TCCACCTCATCATTAATCCTACG 57.531 43.478 0.00 0.00 0.00 3.51
700 709 4.899457 TCCACCTCATCATTAATCCTACGT 59.101 41.667 0.00 0.00 0.00 3.57
701 710 4.991056 CCACCTCATCATTAATCCTACGTG 59.009 45.833 0.00 0.00 0.00 4.49
702 711 4.991056 CACCTCATCATTAATCCTACGTGG 59.009 45.833 0.00 0.00 37.10 4.94
703 712 3.997021 CCTCATCATTAATCCTACGTGGC 59.003 47.826 0.00 0.00 35.26 5.01
704 713 4.503123 CCTCATCATTAATCCTACGTGGCA 60.503 45.833 0.00 0.00 35.26 4.92
705 714 4.377021 TCATCATTAATCCTACGTGGCAC 58.623 43.478 7.79 7.79 35.26 5.01
706 715 4.100963 TCATCATTAATCCTACGTGGCACT 59.899 41.667 16.72 5.47 35.26 4.40
707 716 4.054780 TCATTAATCCTACGTGGCACTC 57.945 45.455 16.72 0.00 35.26 3.51
708 717 2.973694 TTAATCCTACGTGGCACTCC 57.026 50.000 16.72 0.00 35.26 3.85
709 718 2.154567 TAATCCTACGTGGCACTCCT 57.845 50.000 16.72 0.21 35.26 3.69
710 719 2.154567 AATCCTACGTGGCACTCCTA 57.845 50.000 16.72 1.46 35.26 2.94
711 720 2.154567 ATCCTACGTGGCACTCCTAA 57.845 50.000 16.72 0.00 35.26 2.69
712 721 1.471119 TCCTACGTGGCACTCCTAAG 58.529 55.000 16.72 0.92 35.26 2.18
713 722 1.005097 TCCTACGTGGCACTCCTAAGA 59.995 52.381 16.72 2.12 35.26 2.10
714 723 2.032620 CCTACGTGGCACTCCTAAGAT 58.967 52.381 16.72 0.00 0.00 2.40
715 724 3.117776 TCCTACGTGGCACTCCTAAGATA 60.118 47.826 16.72 0.00 35.26 1.98
716 725 3.253677 CCTACGTGGCACTCCTAAGATAG 59.746 52.174 16.72 0.00 0.00 2.08
717 726 1.409427 ACGTGGCACTCCTAAGATAGC 59.591 52.381 16.72 0.00 0.00 2.97
718 727 1.409064 CGTGGCACTCCTAAGATAGCA 59.591 52.381 16.72 0.00 0.00 3.49
719 728 2.799917 CGTGGCACTCCTAAGATAGCAC 60.800 54.545 16.72 0.00 0.00 4.40
720 729 1.762957 TGGCACTCCTAAGATAGCACC 59.237 52.381 0.00 0.00 0.00 5.01
721 730 1.762957 GGCACTCCTAAGATAGCACCA 59.237 52.381 0.00 0.00 0.00 4.17
722 731 2.370189 GGCACTCCTAAGATAGCACCAT 59.630 50.000 0.00 0.00 0.00 3.55
723 732 3.181450 GGCACTCCTAAGATAGCACCATT 60.181 47.826 0.00 0.00 0.00 3.16
724 733 3.812053 GCACTCCTAAGATAGCACCATTG 59.188 47.826 0.00 0.00 0.00 2.82
725 734 4.684485 GCACTCCTAAGATAGCACCATTGT 60.684 45.833 0.00 0.00 0.00 2.71
726 735 5.453339 GCACTCCTAAGATAGCACCATTGTA 60.453 44.000 0.00 0.00 0.00 2.41
727 736 5.986135 CACTCCTAAGATAGCACCATTGTAC 59.014 44.000 0.00 0.00 0.00 2.90
728 737 5.661312 ACTCCTAAGATAGCACCATTGTACA 59.339 40.000 0.00 0.00 0.00 2.90
729 738 6.327626 ACTCCTAAGATAGCACCATTGTACAT 59.672 38.462 0.00 0.00 0.00 2.29
730 739 6.524734 TCCTAAGATAGCACCATTGTACATG 58.475 40.000 0.00 0.00 0.00 3.21
731 740 5.180117 CCTAAGATAGCACCATTGTACATGC 59.820 44.000 10.53 10.53 38.39 4.06
732 741 3.480470 AGATAGCACCATTGTACATGCC 58.520 45.455 14.08 1.71 38.92 4.40
733 742 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
734 743 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19
735 744 1.185315 GCACCATTGTACATGCCCTT 58.815 50.000 7.77 0.00 31.71 3.95
736 745 2.025416 AGCACCATTGTACATGCCCTTA 60.025 45.455 14.08 0.00 38.92 2.69
737 746 2.358898 GCACCATTGTACATGCCCTTAG 59.641 50.000 7.77 0.00 31.71 2.18
748 757 3.834231 ACATGCCCTTAGTTGCAATTCTT 59.166 39.130 0.59 0.00 41.50 2.52
760 769 1.696988 CAATTCTTGGTTTTCGCCCG 58.303 50.000 0.00 0.00 0.00 6.13
761 770 1.268352 CAATTCTTGGTTTTCGCCCGA 59.732 47.619 0.00 0.00 0.00 5.14
762 771 1.834188 ATTCTTGGTTTTCGCCCGAT 58.166 45.000 0.00 0.00 0.00 4.18
763 772 1.611519 TTCTTGGTTTTCGCCCGATT 58.388 45.000 0.00 0.00 0.00 3.34
764 773 1.611519 TCTTGGTTTTCGCCCGATTT 58.388 45.000 0.00 0.00 0.00 2.17
765 774 1.957877 TCTTGGTTTTCGCCCGATTTT 59.042 42.857 0.00 0.00 0.00 1.82
766 775 2.030628 TCTTGGTTTTCGCCCGATTTTC 60.031 45.455 0.00 0.00 0.00 2.29
767 776 0.599060 TGGTTTTCGCCCGATTTTCC 59.401 50.000 0.00 0.00 0.00 3.13
773 782 1.085501 TCGCCCGATTTTCCGCTAAC 61.086 55.000 0.00 0.00 0.00 2.34
787 796 4.901868 TCCGCTAACTAACTGGTCAATTT 58.098 39.130 0.00 0.00 0.00 1.82
792 801 6.402226 CGCTAACTAACTGGTCAATTTTCTCC 60.402 42.308 0.00 0.00 0.00 3.71
807 817 8.612619 TCAATTTTCTCCTGCTTAATTATCGAC 58.387 33.333 0.00 0.00 0.00 4.20
831 841 3.502211 AGGCAAGTATTTTGACTCCGTTG 59.498 43.478 0.00 0.00 30.52 4.10
844 854 7.795482 TTGACTCCGTTGAAAGAAAAATAGA 57.205 32.000 0.00 0.00 0.00 1.98
911 922 1.013524 CCATTTTGCGGCGGAAAAGG 61.014 55.000 35.23 34.45 0.00 3.11
1046 1072 3.515286 CTTCCTCTCGCCGCCGTA 61.515 66.667 0.00 0.00 35.54 4.02
1317 1352 2.101770 CGACTCTTCGGCGGTACC 59.898 66.667 7.21 0.16 41.89 3.34
1329 1364 4.082523 GGTACCGCTGCTGCTCCA 62.083 66.667 14.03 0.00 36.97 3.86
1330 1365 2.187946 GTACCGCTGCTGCTCCAT 59.812 61.111 14.03 0.00 36.97 3.41
1510 1559 1.411246 AGTTACAGTGGAGCACAACGA 59.589 47.619 0.00 0.00 36.74 3.85
1548 1597 5.048782 GTCTAATCTGTTGTTCATTGTGGCA 60.049 40.000 0.00 0.00 0.00 4.92
1652 1712 2.267324 GCCCTCTGCTGGACTGAC 59.733 66.667 0.00 0.00 36.87 3.51
1761 1822 1.001378 GCGGTTATCATGATTGTGGGC 60.001 52.381 14.65 7.96 0.00 5.36
1779 1840 2.975799 GTGAACGGAGGCGGCAAA 60.976 61.111 13.08 0.00 0.00 3.68
1979 2041 6.624352 TGCTTATCCTGCTTGTATGAATTC 57.376 37.500 0.00 0.00 0.00 2.17
2014 2076 2.358267 CTGCATTCCTCTGCTTGATTCC 59.642 50.000 0.00 0.00 42.75 3.01
2037 2117 3.123621 GCAGTGTTAGTTCCGACAATGAG 59.876 47.826 7.94 0.00 42.57 2.90
2044 2207 7.277098 GTGTTAGTTCCGACAATGAGCTAAATA 59.723 37.037 0.00 0.00 37.31 1.40
2128 2292 6.573664 TTATAATGCCAATGTAGGATGTGC 57.426 37.500 0.00 0.00 0.00 4.57
2146 2313 7.291182 AGGATGTGCTATACAAGAGGTCTAATT 59.709 37.037 0.00 0.00 43.77 1.40
2150 2317 8.318412 TGTGCTATACAAGAGGTCTAATTCAAA 58.682 33.333 0.00 0.00 36.06 2.69
2173 2340 7.418337 AACAACTCAGGGAAAAACTGTTTAT 57.582 32.000 6.16 0.00 37.25 1.40
2174 2341 6.805713 ACAACTCAGGGAAAAACTGTTTATG 58.194 36.000 6.16 1.91 37.25 1.90
2175 2342 5.453567 ACTCAGGGAAAAACTGTTTATGC 57.546 39.130 6.16 0.00 37.25 3.14
2203 2370 6.054941 TCAACTGCAGAAAGTTAGAATGTGA 58.945 36.000 23.35 0.00 38.34 3.58
2210 2377 6.109359 CAGAAAGTTAGAATGTGAGGTAGGG 58.891 44.000 0.00 0.00 0.00 3.53
2217 2384 2.653543 ATGTGAGGTAGGGTTGGGTA 57.346 50.000 0.00 0.00 0.00 3.69
2243 2410 4.558697 GCTTTTCTGGTTTATGTGGTCACC 60.559 45.833 0.00 0.00 0.00 4.02
2263 2430 2.357009 CCATGGAGCTAAACAGATGTGC 59.643 50.000 5.56 0.00 0.00 4.57
2320 2498 3.276857 CAACTGATGCTATGAAGTGGCT 58.723 45.455 0.00 0.00 34.98 4.75
2331 2509 9.664332 ATGCTATGAAGTGGCTAATTTATCTAG 57.336 33.333 0.00 0.00 34.98 2.43
2332 2510 7.604164 TGCTATGAAGTGGCTAATTTATCTAGC 59.396 37.037 3.78 3.78 40.93 3.42
2571 2773 4.046938 TGGCTCAGAGATTGTTATCGAC 57.953 45.455 0.00 0.00 35.85 4.20
2602 2804 1.748122 GCACAGGCTCCATCAGGTG 60.748 63.158 0.00 0.00 36.96 4.00
2613 2815 2.038952 TCCATCAGGTGTGAACTTCTGG 59.961 50.000 0.00 0.00 35.88 3.86
2618 2820 1.417890 AGGTGTGAACTTCTGGTCTGG 59.582 52.381 0.00 0.00 0.00 3.86
2704 2906 3.069016 TGACTCGCTTGGTAGTTCTTTCA 59.931 43.478 0.00 0.00 0.00 2.69
3028 3280 7.630944 GCATAGTAACTACCTAGCAAGTTCAGT 60.631 40.741 10.27 5.15 37.19 3.41
3077 3329 3.129852 TGTGTTTTGCTTGTTCAGTCG 57.870 42.857 0.00 0.00 0.00 4.18
3083 3335 1.279840 GCTTGTTCAGTCGTGTGCC 59.720 57.895 0.00 0.00 0.00 5.01
3084 3336 1.436195 GCTTGTTCAGTCGTGTGCCA 61.436 55.000 0.00 0.00 0.00 4.92
3212 3483 6.531594 TCTGCTGTTACTTACTTGATTCATCG 59.468 38.462 0.00 0.00 0.00 3.84
3232 3503 7.851228 TCATCGGCTATGTTTCTATTGGATAT 58.149 34.615 0.00 0.00 36.89 1.63
3233 3504 7.765819 TCATCGGCTATGTTTCTATTGGATATG 59.234 37.037 0.00 0.00 36.89 1.78
3237 3509 9.035607 CGGCTATGTTTCTATTGGATATGATAC 57.964 37.037 0.00 0.00 0.00 2.24
3474 3748 4.099419 GGAATTCCAGTCAAGTTTGTTGGT 59.901 41.667 20.04 1.44 36.29 3.67
3674 4111 1.006102 CGTCCGCCTCACTTGTCTT 60.006 57.895 0.00 0.00 0.00 3.01
3690 4127 5.696724 ACTTGTCTTTGTCGTTGATCCTAAG 59.303 40.000 0.00 0.00 0.00 2.18
3691 4128 5.462530 TGTCTTTGTCGTTGATCCTAAGA 57.537 39.130 0.00 0.00 0.00 2.10
3693 4130 5.926542 TGTCTTTGTCGTTGATCCTAAGAAG 59.073 40.000 0.00 0.00 0.00 2.85
3694 4131 4.929808 TCTTTGTCGTTGATCCTAAGAAGC 59.070 41.667 0.00 0.00 0.00 3.86
3695 4132 3.953712 TGTCGTTGATCCTAAGAAGCA 57.046 42.857 0.00 0.00 0.00 3.91
3700 4193 4.690748 TCGTTGATCCTAAGAAGCAAAGTG 59.309 41.667 0.00 0.00 0.00 3.16
3729 4222 8.985315 ATATGATTCTTGTGATTAAGCTCCAA 57.015 30.769 0.00 0.00 0.00 3.53
3730 4223 7.707624 ATGATTCTTGTGATTAAGCTCCAAA 57.292 32.000 0.00 0.00 0.00 3.28
3731 4224 7.149569 TGATTCTTGTGATTAAGCTCCAAAG 57.850 36.000 0.00 0.00 0.00 2.77
3732 4225 6.942005 TGATTCTTGTGATTAAGCTCCAAAGA 59.058 34.615 0.00 0.00 0.00 2.52
3733 4226 7.448161 TGATTCTTGTGATTAAGCTCCAAAGAA 59.552 33.333 9.37 9.37 0.00 2.52
3734 4227 6.808008 TCTTGTGATTAAGCTCCAAAGAAG 57.192 37.500 0.00 0.00 0.00 2.85
3735 4228 5.182001 TCTTGTGATTAAGCTCCAAAGAAGC 59.818 40.000 0.00 0.00 0.00 3.86
3736 4229 4.397420 TGTGATTAAGCTCCAAAGAAGCA 58.603 39.130 0.00 0.00 0.00 3.91
3737 4230 4.826733 TGTGATTAAGCTCCAAAGAAGCAA 59.173 37.500 0.00 0.00 0.00 3.91
3738 4231 5.048504 TGTGATTAAGCTCCAAAGAAGCAAG 60.049 40.000 0.00 0.00 0.00 4.01
3739 4232 5.048434 GTGATTAAGCTCCAAAGAAGCAAGT 60.048 40.000 0.00 0.00 0.00 3.16
3740 4233 6.149474 GTGATTAAGCTCCAAAGAAGCAAGTA 59.851 38.462 0.00 0.00 0.00 2.24
3741 4234 6.886459 TGATTAAGCTCCAAAGAAGCAAGTAT 59.114 34.615 0.00 0.00 0.00 2.12
3742 4235 7.394359 TGATTAAGCTCCAAAGAAGCAAGTATT 59.606 33.333 0.00 0.00 0.00 1.89
3743 4236 7.524717 TTAAGCTCCAAAGAAGCAAGTATTT 57.475 32.000 0.00 0.00 0.00 1.40
3744 4237 8.630054 TTAAGCTCCAAAGAAGCAAGTATTTA 57.370 30.769 0.00 0.00 0.00 1.40
3745 4238 7.709149 AAGCTCCAAAGAAGCAAGTATTTAT 57.291 32.000 0.00 0.00 0.00 1.40
3746 4239 8.807948 AAGCTCCAAAGAAGCAAGTATTTATA 57.192 30.769 0.00 0.00 0.00 0.98
3747 4240 8.986929 AGCTCCAAAGAAGCAAGTATTTATAT 57.013 30.769 0.00 0.00 0.00 0.86
3793 4286 7.120138 AGCAAGAGTACTAACAGAGAAGAGTAC 59.880 40.741 0.00 3.40 42.97 2.73
3826 4319 7.615790 CAAACTTTTCTTTTCAGACTTGCATC 58.384 34.615 0.00 0.00 0.00 3.91
3872 4365 7.278875 TGGTCATACATTCATAACATACAGCA 58.721 34.615 0.00 0.00 0.00 4.41
3940 4434 8.134895 ACAAATTGAATCATAAACGACACACTT 58.865 29.630 0.00 0.00 0.00 3.16
4043 4537 2.594321 TGCGCAACAATCACATAAAGC 58.406 42.857 8.16 0.00 0.00 3.51
4099 4593 3.636231 TCCAACTGGAGGGGCGTG 61.636 66.667 0.00 0.00 39.78 5.34
4103 4597 2.224159 AACTGGAGGGGCGTGTCAT 61.224 57.895 0.00 0.00 0.00 3.06
4191 4685 0.822532 GATAGTTCGGGCCTCCTCGA 60.823 60.000 0.84 0.00 0.00 4.04
4268 4762 0.182061 CCATATCCACTGCCAGCACT 59.818 55.000 0.00 0.00 0.00 4.40
4392 4886 0.254747 TATAGCCTGCGCCTTGGTTT 59.745 50.000 4.18 0.63 34.57 3.27
4398 4892 2.597510 GCGCCTTGGTTTCCACCT 60.598 61.111 0.00 0.00 44.61 4.00
4437 4931 0.977395 CTCCAGGTCCTCGAGGTTTT 59.023 55.000 30.17 14.13 36.34 2.43
4494 4988 2.124403 CCAGGCCTGATCTGGTGC 60.124 66.667 34.91 6.42 44.97 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.949578 ATTACGGCAATTCAAAGATGTTTG 57.050 33.333 8.99 8.99 43.96 2.93
44 45 7.754924 CACTATTACGGCAATTCAAAGATGTTT 59.245 33.333 0.00 0.00 0.00 2.83
52 53 4.093703 CGGTTCACTATTACGGCAATTCAA 59.906 41.667 0.00 0.00 0.00 2.69
58 59 1.404449 CCACGGTTCACTATTACGGCA 60.404 52.381 0.00 0.00 0.00 5.69
59 60 1.283736 CCACGGTTCACTATTACGGC 58.716 55.000 0.00 0.00 0.00 5.68
60 61 1.283736 GCCACGGTTCACTATTACGG 58.716 55.000 0.00 0.00 0.00 4.02
61 62 1.999048 TGCCACGGTTCACTATTACG 58.001 50.000 0.00 0.00 0.00 3.18
75 76 1.079875 CAATCTTTGCCGCATGCCAC 61.080 55.000 13.15 4.74 40.16 5.01
77 78 0.803380 GTCAATCTTTGCCGCATGCC 60.803 55.000 13.15 0.00 40.16 4.40
80 81 2.492881 TGATTGTCAATCTTTGCCGCAT 59.507 40.909 22.89 0.00 38.72 4.73
84 85 2.253603 GCGTGATTGTCAATCTTTGCC 58.746 47.619 22.89 7.92 38.72 4.52
85 86 2.253603 GGCGTGATTGTCAATCTTTGC 58.746 47.619 22.89 21.19 38.72 3.68
100 101 3.275143 TCCTACCAATATGTTTGGCGTG 58.725 45.455 8.70 1.38 43.23 5.34
116 117 2.516906 CCTAGACCGGGAGATTCCTAC 58.483 57.143 6.32 0.00 36.57 3.18
118 119 0.470268 GCCTAGACCGGGAGATTCCT 60.470 60.000 6.32 0.00 36.57 3.36
121 122 1.403687 GCTGCCTAGACCGGGAGATT 61.404 60.000 6.32 0.00 44.48 2.40
149 150 4.787135 TGGATTGATGTGGCCATACTAA 57.213 40.909 9.72 5.64 0.00 2.24
156 157 1.066929 GGTTGTTGGATTGATGTGGCC 60.067 52.381 0.00 0.00 0.00 5.36
157 158 1.895131 AGGTTGTTGGATTGATGTGGC 59.105 47.619 0.00 0.00 0.00 5.01
159 160 3.006110 AGCAAGGTTGTTGGATTGATGTG 59.994 43.478 0.00 0.00 0.00 3.21
161 162 3.256383 TGAGCAAGGTTGTTGGATTGATG 59.744 43.478 0.00 0.00 0.00 3.07
183 184 4.601857 TGGTCCCTTCTTTGGAGACTTTAT 59.398 41.667 0.00 0.00 30.98 1.40
184 185 3.977999 TGGTCCCTTCTTTGGAGACTTTA 59.022 43.478 0.00 0.00 30.98 1.85
193 195 3.439857 TCTTCCATGGTCCCTTCTTTG 57.560 47.619 12.58 0.00 0.00 2.77
208 210 8.084073 TCATCAATGACAAAATCAACTTCTTCC 58.916 33.333 0.00 0.00 41.93 3.46
227 229 6.604396 TGTGGCTCTAAATGTTCATCATCAAT 59.396 34.615 0.00 0.00 35.48 2.57
228 230 5.945191 TGTGGCTCTAAATGTTCATCATCAA 59.055 36.000 0.00 0.00 35.48 2.57
276 284 0.111001 CTCGTTGTTTTACACGGGCG 60.111 55.000 0.00 0.00 0.00 6.13
463 472 5.356751 TGTCTTATCAACCATTGTACATGCC 59.643 40.000 0.00 0.00 0.00 4.40
464 473 6.435430 TGTCTTATCAACCATTGTACATGC 57.565 37.500 0.00 0.00 0.00 4.06
465 474 8.896744 AGATTGTCTTATCAACCATTGTACATG 58.103 33.333 0.00 0.00 0.00 3.21
466 475 9.466497 AAGATTGTCTTATCAACCATTGTACAT 57.534 29.630 0.00 0.00 34.42 2.29
467 476 8.862325 AAGATTGTCTTATCAACCATTGTACA 57.138 30.769 0.00 0.00 34.42 2.90
482 491 9.678260 ATGCAAGACTTAAGATAAGATTGTCTT 57.322 29.630 10.09 9.18 41.90 3.01
483 492 9.107177 CATGCAAGACTTAAGATAAGATTGTCT 57.893 33.333 10.09 0.00 35.20 3.41
484 493 7.854916 GCATGCAAGACTTAAGATAAGATTGTC 59.145 37.037 14.21 0.00 0.00 3.18
485 494 7.337689 TGCATGCAAGACTTAAGATAAGATTGT 59.662 33.333 20.30 0.00 0.00 2.71
486 495 7.700505 TGCATGCAAGACTTAAGATAAGATTG 58.299 34.615 20.30 8.91 0.00 2.67
487 496 7.870509 TGCATGCAAGACTTAAGATAAGATT 57.129 32.000 20.30 0.00 0.00 2.40
488 497 7.870509 TTGCATGCAAGACTTAAGATAAGAT 57.129 32.000 28.80 0.00 0.00 2.40
489 498 7.870509 ATTGCATGCAAGACTTAAGATAAGA 57.129 32.000 34.15 9.52 39.47 2.10
490 499 8.922058 AAATTGCATGCAAGACTTAAGATAAG 57.078 30.769 34.15 0.00 39.47 1.73
492 501 9.394767 TCTAAATTGCATGCAAGACTTAAGATA 57.605 29.630 34.15 14.30 39.47 1.98
493 502 8.284945 TCTAAATTGCATGCAAGACTTAAGAT 57.715 30.769 34.15 14.63 39.47 2.40
494 503 7.607607 TCTCTAAATTGCATGCAAGACTTAAGA 59.392 33.333 34.15 26.42 39.47 2.10
495 504 7.755591 TCTCTAAATTGCATGCAAGACTTAAG 58.244 34.615 34.15 24.96 39.47 1.85
496 505 7.686438 TCTCTAAATTGCATGCAAGACTTAA 57.314 32.000 34.15 18.32 39.47 1.85
497 506 7.553760 TCATCTCTAAATTGCATGCAAGACTTA 59.446 33.333 34.15 26.78 39.47 2.24
498 507 6.376299 TCATCTCTAAATTGCATGCAAGACTT 59.624 34.615 34.15 27.05 39.47 3.01
499 508 5.884232 TCATCTCTAAATTGCATGCAAGACT 59.116 36.000 34.15 23.32 39.47 3.24
500 509 5.970023 GTCATCTCTAAATTGCATGCAAGAC 59.030 40.000 34.15 26.57 39.47 3.01
501 510 5.648960 TGTCATCTCTAAATTGCATGCAAGA 59.351 36.000 34.15 25.56 39.47 3.02
502 511 5.886992 TGTCATCTCTAAATTGCATGCAAG 58.113 37.500 34.15 22.53 39.47 4.01
503 512 5.900865 TGTCATCTCTAAATTGCATGCAA 57.099 34.783 33.57 33.57 40.47 4.08
504 513 5.900865 TTGTCATCTCTAAATTGCATGCA 57.099 34.783 18.46 18.46 0.00 3.96
505 514 7.585286 TTTTTGTCATCTCTAAATTGCATGC 57.415 32.000 11.82 11.82 0.00 4.06
533 542 8.322091 GGCTAAGATATAACCCATTGTAGACAT 58.678 37.037 0.00 0.00 0.00 3.06
534 543 7.512746 AGGCTAAGATATAACCCATTGTAGACA 59.487 37.037 0.00 0.00 0.00 3.41
535 544 7.908453 AGGCTAAGATATAACCCATTGTAGAC 58.092 38.462 0.00 0.00 0.00 2.59
536 545 8.506196 AAGGCTAAGATATAACCCATTGTAGA 57.494 34.615 0.00 0.00 0.00 2.59
539 548 9.117223 AGATAAGGCTAAGATATAACCCATTGT 57.883 33.333 0.00 0.00 0.00 2.71
540 549 9.965902 AAGATAAGGCTAAGATATAACCCATTG 57.034 33.333 0.00 0.00 0.00 2.82
542 551 9.338968 TGAAGATAAGGCTAAGATATAACCCAT 57.661 33.333 0.00 0.00 0.00 4.00
543 552 8.736097 TGAAGATAAGGCTAAGATATAACCCA 57.264 34.615 0.00 0.00 0.00 4.51
557 566 9.631452 GGAATTGCTAATTATTGAAGATAAGGC 57.369 33.333 0.00 0.00 0.00 4.35
570 579 9.868277 CACCATGTTTTAAGGAATTGCTAATTA 57.132 29.630 0.00 0.00 0.00 1.40
571 580 8.592809 TCACCATGTTTTAAGGAATTGCTAATT 58.407 29.630 0.00 0.00 0.00 1.40
572 581 8.133024 TCACCATGTTTTAAGGAATTGCTAAT 57.867 30.769 0.00 0.00 0.00 1.73
573 582 7.450014 TCTCACCATGTTTTAAGGAATTGCTAA 59.550 33.333 0.00 0.00 0.00 3.09
574 583 6.945435 TCTCACCATGTTTTAAGGAATTGCTA 59.055 34.615 0.00 0.00 0.00 3.49
575 584 5.774690 TCTCACCATGTTTTAAGGAATTGCT 59.225 36.000 0.00 0.00 0.00 3.91
576 585 5.863935 GTCTCACCATGTTTTAAGGAATTGC 59.136 40.000 0.00 0.00 0.00 3.56
577 586 6.980593 TGTCTCACCATGTTTTAAGGAATTG 58.019 36.000 0.00 0.00 0.00 2.32
578 587 7.595819 TTGTCTCACCATGTTTTAAGGAATT 57.404 32.000 0.00 0.00 0.00 2.17
579 588 7.595819 TTTGTCTCACCATGTTTTAAGGAAT 57.404 32.000 0.00 0.00 0.00 3.01
580 589 7.595819 ATTTGTCTCACCATGTTTTAAGGAA 57.404 32.000 0.00 0.00 0.00 3.36
581 590 7.069331 ACAATTTGTCTCACCATGTTTTAAGGA 59.931 33.333 0.00 0.00 0.00 3.36
582 591 7.169645 CACAATTTGTCTCACCATGTTTTAAGG 59.830 37.037 0.00 0.00 0.00 2.69
583 592 7.306749 GCACAATTTGTCTCACCATGTTTTAAG 60.307 37.037 0.00 0.00 0.00 1.85
584 593 6.478344 GCACAATTTGTCTCACCATGTTTTAA 59.522 34.615 0.00 0.00 0.00 1.52
585 594 5.982516 GCACAATTTGTCTCACCATGTTTTA 59.017 36.000 0.00 0.00 0.00 1.52
586 595 4.810491 GCACAATTTGTCTCACCATGTTTT 59.190 37.500 0.00 0.00 0.00 2.43
587 596 4.099881 AGCACAATTTGTCTCACCATGTTT 59.900 37.500 0.00 0.00 0.00 2.83
588 597 3.638160 AGCACAATTTGTCTCACCATGTT 59.362 39.130 0.00 0.00 0.00 2.71
589 598 3.225104 AGCACAATTTGTCTCACCATGT 58.775 40.909 0.00 0.00 0.00 3.21
590 599 3.928727 AGCACAATTTGTCTCACCATG 57.071 42.857 0.00 0.00 0.00 3.66
591 600 5.316167 TCTTAGCACAATTTGTCTCACCAT 58.684 37.500 0.00 0.00 0.00 3.55
592 601 4.713553 TCTTAGCACAATTTGTCTCACCA 58.286 39.130 0.00 0.00 0.00 4.17
593 602 4.997395 TCTCTTAGCACAATTTGTCTCACC 59.003 41.667 0.00 0.00 0.00 4.02
594 603 6.369890 TGATCTCTTAGCACAATTTGTCTCAC 59.630 38.462 0.00 0.00 0.00 3.51
595 604 6.466812 TGATCTCTTAGCACAATTTGTCTCA 58.533 36.000 0.00 0.00 0.00 3.27
596 605 6.974932 TGATCTCTTAGCACAATTTGTCTC 57.025 37.500 0.00 0.00 0.00 3.36
597 606 7.337167 AGATGATCTCTTAGCACAATTTGTCT 58.663 34.615 0.00 3.34 0.00 3.41
598 607 7.551035 AGATGATCTCTTAGCACAATTTGTC 57.449 36.000 0.00 0.00 0.00 3.18
599 608 7.551035 GAGATGATCTCTTAGCACAATTTGT 57.449 36.000 14.98 0.00 40.30 2.83
631 640 9.746457 AAAGGCTTGTCTTCTCTTATTTAAGAT 57.254 29.630 0.00 0.00 41.12 2.40
632 641 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
633 642 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
634 643 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
635 644 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
636 645 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
637 646 9.004717 GTAAGAAAAGGCTTGTCTTCTCTTATT 57.995 33.333 30.86 11.70 38.09 1.40
638 647 7.332182 CGTAAGAAAAGGCTTGTCTTCTCTTAT 59.668 37.037 30.86 12.37 38.09 1.73
639 648 6.645415 CGTAAGAAAAGGCTTGTCTTCTCTTA 59.355 38.462 30.86 14.34 36.06 2.10
640 649 5.467063 CGTAAGAAAAGGCTTGTCTTCTCTT 59.533 40.000 30.86 18.21 37.66 2.85
641 650 4.991687 CGTAAGAAAAGGCTTGTCTTCTCT 59.008 41.667 30.86 14.05 43.02 3.10
642 651 5.270812 CGTAAGAAAAGGCTTGTCTTCTC 57.729 43.478 30.86 23.31 43.02 2.87
658 667 3.263681 TGGAGGAGAGAGAACTCGTAAGA 59.736 47.826 0.00 0.00 46.64 2.10
659 668 3.375922 GTGGAGGAGAGAGAACTCGTAAG 59.624 52.174 0.00 0.00 46.64 2.34
660 669 3.345414 GTGGAGGAGAGAGAACTCGTAA 58.655 50.000 0.00 0.00 46.64 3.18
661 670 2.355920 GGTGGAGGAGAGAGAACTCGTA 60.356 54.545 0.00 0.00 46.64 3.43
662 671 1.614850 GGTGGAGGAGAGAGAACTCGT 60.615 57.143 0.00 0.00 46.64 4.18
663 672 1.099689 GGTGGAGGAGAGAGAACTCG 58.900 60.000 0.00 0.00 46.64 4.18
664 673 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
665 674 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
666 675 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
667 676 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
668 677 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
669 678 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
670 679 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
671 680 5.279910 GGATTAATGATGAGGTGGAGGAGAG 60.280 48.000 0.00 0.00 0.00 3.20
672 681 4.594920 GGATTAATGATGAGGTGGAGGAGA 59.405 45.833 0.00 0.00 0.00 3.71
673 682 4.596643 AGGATTAATGATGAGGTGGAGGAG 59.403 45.833 0.00 0.00 0.00 3.69
674 683 4.570926 AGGATTAATGATGAGGTGGAGGA 58.429 43.478 0.00 0.00 0.00 3.71
675 684 4.989875 AGGATTAATGATGAGGTGGAGG 57.010 45.455 0.00 0.00 0.00 4.30
676 685 5.011125 ACGTAGGATTAATGATGAGGTGGAG 59.989 44.000 0.00 0.00 0.00 3.86
677 686 4.899457 ACGTAGGATTAATGATGAGGTGGA 59.101 41.667 0.00 0.00 0.00 4.02
678 687 4.991056 CACGTAGGATTAATGATGAGGTGG 59.009 45.833 0.00 0.00 0.00 4.61
679 688 4.991056 CCACGTAGGATTAATGATGAGGTG 59.009 45.833 0.00 0.00 41.22 4.00
680 689 4.503296 GCCACGTAGGATTAATGATGAGGT 60.503 45.833 8.04 0.00 41.22 3.85
681 690 3.997021 GCCACGTAGGATTAATGATGAGG 59.003 47.826 8.04 0.00 41.22 3.86
682 691 4.449068 GTGCCACGTAGGATTAATGATGAG 59.551 45.833 8.04 0.00 41.22 2.90
683 692 4.100963 AGTGCCACGTAGGATTAATGATGA 59.899 41.667 8.04 0.00 41.22 2.92
684 693 4.380531 AGTGCCACGTAGGATTAATGATG 58.619 43.478 8.04 0.00 41.22 3.07
685 694 4.503296 GGAGTGCCACGTAGGATTAATGAT 60.503 45.833 8.04 0.00 41.22 2.45
686 695 3.181469 GGAGTGCCACGTAGGATTAATGA 60.181 47.826 8.04 0.00 41.22 2.57
687 696 3.131396 GGAGTGCCACGTAGGATTAATG 58.869 50.000 8.04 0.00 41.22 1.90
688 697 3.039011 AGGAGTGCCACGTAGGATTAAT 58.961 45.455 8.04 0.00 41.22 1.40
689 698 2.463752 AGGAGTGCCACGTAGGATTAA 58.536 47.619 8.04 0.00 41.22 1.40
690 699 2.154567 AGGAGTGCCACGTAGGATTA 57.845 50.000 8.04 0.00 41.22 1.75
691 700 2.154567 TAGGAGTGCCACGTAGGATT 57.845 50.000 8.04 0.00 41.22 3.01
692 701 2.032620 CTTAGGAGTGCCACGTAGGAT 58.967 52.381 8.04 0.00 41.22 3.24
693 702 1.005097 TCTTAGGAGTGCCACGTAGGA 59.995 52.381 8.04 0.00 41.22 2.94
694 703 1.471119 TCTTAGGAGTGCCACGTAGG 58.529 55.000 0.00 0.00 41.84 3.18
695 704 3.304794 GCTATCTTAGGAGTGCCACGTAG 60.305 52.174 0.00 0.00 36.29 3.51
696 705 2.621998 GCTATCTTAGGAGTGCCACGTA 59.378 50.000 0.00 0.00 36.29 3.57
697 706 1.409427 GCTATCTTAGGAGTGCCACGT 59.591 52.381 0.00 0.00 36.29 4.49
698 707 1.409064 TGCTATCTTAGGAGTGCCACG 59.591 52.381 0.00 0.00 36.29 4.94
699 708 2.483889 GGTGCTATCTTAGGAGTGCCAC 60.484 54.545 0.00 0.00 36.29 5.01
700 709 1.762957 GGTGCTATCTTAGGAGTGCCA 59.237 52.381 0.00 0.00 36.29 4.92
701 710 1.762957 TGGTGCTATCTTAGGAGTGCC 59.237 52.381 0.70 0.00 0.00 5.01
702 711 3.760580 ATGGTGCTATCTTAGGAGTGC 57.239 47.619 0.00 0.00 0.00 4.40
703 712 5.028549 ACAATGGTGCTATCTTAGGAGTG 57.971 43.478 0.00 0.00 0.00 3.51
704 713 5.661312 TGTACAATGGTGCTATCTTAGGAGT 59.339 40.000 0.00 0.00 0.00 3.85
705 714 6.161855 TGTACAATGGTGCTATCTTAGGAG 57.838 41.667 0.00 0.00 0.00 3.69
706 715 6.524734 CATGTACAATGGTGCTATCTTAGGA 58.475 40.000 0.00 0.00 0.00 2.94
707 716 5.180117 GCATGTACAATGGTGCTATCTTAGG 59.820 44.000 11.12 0.00 34.85 2.69
708 717 5.180117 GGCATGTACAATGGTGCTATCTTAG 59.820 44.000 16.47 0.00 37.70 2.18
709 718 5.063204 GGCATGTACAATGGTGCTATCTTA 58.937 41.667 16.47 0.00 37.70 2.10
710 719 3.885297 GGCATGTACAATGGTGCTATCTT 59.115 43.478 16.47 0.00 37.70 2.40
711 720 3.480470 GGCATGTACAATGGTGCTATCT 58.520 45.455 16.47 0.00 37.70 1.98
712 721 2.554032 GGGCATGTACAATGGTGCTATC 59.446 50.000 16.47 3.12 37.70 2.08
713 722 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
714 723 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
715 724 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
716 725 1.185315 AAGGGCATGTACAATGGTGC 58.815 50.000 10.12 10.12 36.88 5.01
717 726 3.620488 ACTAAGGGCATGTACAATGGTG 58.380 45.455 0.00 0.00 0.00 4.17
718 727 4.016444 CAACTAAGGGCATGTACAATGGT 58.984 43.478 0.00 0.00 0.00 3.55
719 728 3.181487 GCAACTAAGGGCATGTACAATGG 60.181 47.826 0.00 0.00 0.00 3.16
720 729 3.443329 TGCAACTAAGGGCATGTACAATG 59.557 43.478 0.00 0.12 34.58 2.82
721 730 3.696045 TGCAACTAAGGGCATGTACAAT 58.304 40.909 0.00 0.00 34.58 2.71
722 731 3.147553 TGCAACTAAGGGCATGTACAA 57.852 42.857 0.00 0.00 34.58 2.41
723 732 2.869101 TGCAACTAAGGGCATGTACA 57.131 45.000 0.00 0.00 34.58 2.90
724 733 4.399303 AGAATTGCAACTAAGGGCATGTAC 59.601 41.667 0.00 0.00 40.17 2.90
725 734 4.599041 AGAATTGCAACTAAGGGCATGTA 58.401 39.130 0.00 0.00 40.17 2.29
726 735 3.434309 AGAATTGCAACTAAGGGCATGT 58.566 40.909 0.00 0.00 40.17 3.21
727 736 4.178540 CAAGAATTGCAACTAAGGGCATG 58.821 43.478 0.00 0.00 40.39 4.06
728 737 4.460948 CAAGAATTGCAACTAAGGGCAT 57.539 40.909 0.00 0.00 40.39 4.40
729 738 3.940209 CAAGAATTGCAACTAAGGGCA 57.060 42.857 0.00 0.00 40.39 5.36
748 757 0.599060 GGAAAATCGGGCGAAAACCA 59.401 50.000 0.00 0.00 0.00 3.67
760 769 4.933400 TGACCAGTTAGTTAGCGGAAAATC 59.067 41.667 0.00 0.00 0.00 2.17
761 770 4.901868 TGACCAGTTAGTTAGCGGAAAAT 58.098 39.130 0.00 0.00 0.00 1.82
762 771 4.339872 TGACCAGTTAGTTAGCGGAAAA 57.660 40.909 0.00 0.00 0.00 2.29
763 772 4.339872 TTGACCAGTTAGTTAGCGGAAA 57.660 40.909 0.00 0.00 0.00 3.13
764 773 4.546829 ATTGACCAGTTAGTTAGCGGAA 57.453 40.909 0.00 0.00 0.00 4.30
765 774 4.546829 AATTGACCAGTTAGTTAGCGGA 57.453 40.909 0.00 0.00 0.00 5.54
766 775 5.411669 AGAAAATTGACCAGTTAGTTAGCGG 59.588 40.000 0.00 0.00 0.00 5.52
767 776 6.402226 GGAGAAAATTGACCAGTTAGTTAGCG 60.402 42.308 0.00 0.00 0.00 4.26
773 782 5.006386 AGCAGGAGAAAATTGACCAGTTAG 58.994 41.667 0.00 0.00 0.00 2.34
787 796 5.507482 CCTCGTCGATAATTAAGCAGGAGAA 60.507 44.000 0.00 0.00 0.00 2.87
792 801 3.381045 TGCCTCGTCGATAATTAAGCAG 58.619 45.455 0.00 0.00 0.00 4.24
807 817 2.348666 CGGAGTCAAAATACTTGCCTCG 59.651 50.000 0.00 0.00 0.00 4.63
844 854 3.245586 TGGGGTCAAACTAGGAATTGCAT 60.246 43.478 0.00 0.00 0.00 3.96
1022 1048 2.042843 GCGAGAGGAAGGGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
1230 1259 0.818296 CGAGGTTCCAGTAGGTGAGG 59.182 60.000 0.00 0.00 35.89 3.86
1329 1364 2.472029 ACATCGGTCAGAGGGAGAAAT 58.528 47.619 0.00 0.00 34.44 2.17
1330 1365 1.938585 ACATCGGTCAGAGGGAGAAA 58.061 50.000 0.00 0.00 34.44 2.52
1369 1408 2.273179 CCCGAAGTCCGACACCAGA 61.273 63.158 0.40 0.00 41.76 3.86
1510 1559 5.178797 CAGATTAGACCACGAAACCAATCT 58.821 41.667 0.00 0.00 32.86 2.40
1548 1597 0.320771 ATCTTTTCAGCGACGCCTGT 60.321 50.000 17.79 0.00 34.47 4.00
1779 1840 3.015327 AGAAGTACCTAGCGATGTCGTT 58.985 45.455 4.20 0.39 42.22 3.85
1979 2041 3.624861 GGAATGCAGAGGTTATGTGAGTG 59.375 47.826 0.00 0.00 0.00 3.51
2014 2076 1.493772 TTGTCGGAACTAACACTGCG 58.506 50.000 0.00 0.00 0.00 5.18
2146 2313 4.770010 ACAGTTTTTCCCTGAGTTGTTTGA 59.230 37.500 0.00 0.00 34.04 2.69
2150 2317 6.682861 GCATAAACAGTTTTTCCCTGAGTTGT 60.683 38.462 3.25 0.00 34.04 3.32
2203 2370 3.433088 AAGCTATACCCAACCCTACCT 57.567 47.619 0.00 0.00 0.00 3.08
2210 2377 5.977489 AAACCAGAAAAGCTATACCCAAC 57.023 39.130 0.00 0.00 0.00 3.77
2217 2384 6.151144 GTGACCACATAAACCAGAAAAGCTAT 59.849 38.462 0.00 0.00 0.00 2.97
2243 2410 3.276857 AGCACATCTGTTTAGCTCCATG 58.723 45.455 0.00 0.00 0.00 3.66
2299 2477 3.276857 AGCCACTTCATAGCATCAGTTG 58.723 45.455 0.00 0.00 0.00 3.16
2302 2480 6.630444 AAATTAGCCACTTCATAGCATCAG 57.370 37.500 0.00 0.00 0.00 2.90
2331 2509 6.486657 TCCTGCAAATATTGTAGATAACAGGC 59.513 38.462 9.36 0.00 44.85 4.85
2332 2510 8.450578 TTCCTGCAAATATTGTAGATAACAGG 57.549 34.615 9.36 0.00 44.85 4.00
2571 2773 1.398390 GCCTGTGCCTTCTTATCGTTG 59.602 52.381 0.00 0.00 0.00 4.10
2602 2804 1.876156 CTTGCCAGACCAGAAGTTCAC 59.124 52.381 5.50 0.00 0.00 3.18
2613 2815 0.874390 TTCAATCACGCTTGCCAGAC 59.126 50.000 0.00 0.00 0.00 3.51
2618 2820 9.450807 AAATAATACTTATTCAATCACGCTTGC 57.549 29.630 0.00 0.00 34.88 4.01
2704 2906 0.470766 TCCCACGTTTTACTGCCTGT 59.529 50.000 0.00 0.00 0.00 4.00
2817 3022 7.156876 TGCTACAGAACAATTAATTTCCCAG 57.843 36.000 0.00 0.00 0.00 4.45
3009 3214 5.567025 GCACTACTGAACTTGCTAGGTAGTT 60.567 44.000 10.55 0.00 38.09 2.24
3028 3280 5.151297 TGATGAGATCTGTTTGTGCACTA 57.849 39.130 19.41 7.83 0.00 2.74
3232 3503 4.783227 AGCCAAGAAAGTCCCTTAGTATCA 59.217 41.667 0.00 0.00 0.00 2.15
3233 3504 5.360649 AGCCAAGAAAGTCCCTTAGTATC 57.639 43.478 0.00 0.00 0.00 2.24
3237 3509 4.021102 TGAAGCCAAGAAAGTCCCTTAG 57.979 45.455 0.00 0.00 0.00 2.18
3239 3511 3.532641 ATGAAGCCAAGAAAGTCCCTT 57.467 42.857 0.00 0.00 0.00 3.95
3294 3567 1.067776 CGAGCAGTCCCGTCTAACTTT 60.068 52.381 0.00 0.00 0.00 2.66
3405 3678 2.373169 AGACAGGATTCAGGTCAGCAAA 59.627 45.455 8.92 0.00 34.04 3.68
3641 4078 0.236711 GGACGAGTCGACGACTGAAA 59.763 55.000 33.68 0.00 43.53 2.69
3674 4111 4.265904 TGCTTCTTAGGATCAACGACAA 57.734 40.909 0.00 0.00 0.00 3.18
3690 4127 9.846248 ACAAGAATCATATAAACACTTTGCTTC 57.154 29.630 0.00 0.00 0.00 3.86
3691 4128 9.630098 CACAAGAATCATATAAACACTTTGCTT 57.370 29.630 0.00 0.00 0.00 3.91
3693 4130 9.793252 ATCACAAGAATCATATAAACACTTTGC 57.207 29.630 0.00 0.00 0.00 3.68
3727 4220 7.910162 ACGTGCATATAAATACTTGCTTCTTTG 59.090 33.333 0.00 0.00 36.10 2.77
3729 4222 7.553881 ACGTGCATATAAATACTTGCTTCTT 57.446 32.000 0.00 0.00 36.10 2.52
3730 4223 7.409697 CAACGTGCATATAAATACTTGCTTCT 58.590 34.615 0.00 0.00 36.10 2.85
3731 4224 6.140737 GCAACGTGCATATAAATACTTGCTTC 59.859 38.462 0.00 0.00 44.26 3.86
3732 4225 5.971202 GCAACGTGCATATAAATACTTGCTT 59.029 36.000 0.00 0.00 44.26 3.91
3733 4226 5.510671 GCAACGTGCATATAAATACTTGCT 58.489 37.500 0.00 0.00 44.26 3.91
3734 4227 5.789774 GCAACGTGCATATAAATACTTGC 57.210 39.130 0.00 0.00 44.26 4.01
3793 4286 8.962111 GTCTGAAAAGAAAAGTTTGCTATCAAG 58.038 33.333 11.32 7.44 33.12 3.02
3826 4319 8.739039 TGACCATTAATGAAATGTTCTTGTAGG 58.261 33.333 17.23 0.00 43.03 3.18
3940 4434 4.551702 TTGTAGCAGAACAGGCTATTGA 57.448 40.909 0.00 0.00 44.86 2.57
4038 4532 6.336566 TGTTTGCTGTTCAAATTCTGCTTTA 58.663 32.000 0.00 0.00 45.43 1.85
4043 4537 7.648908 TGTAGAATGTTTGCTGTTCAAATTCTG 59.351 33.333 12.69 0.00 45.43 3.02
4103 4597 8.702163 ATAATATTTGTCATATCATGTCGCGA 57.298 30.769 3.71 3.71 0.00 5.87
4110 4604 9.251440 AGCTGGCAATAATATTTGTCATATCAT 57.749 29.630 0.00 0.00 40.20 2.45
4191 4685 3.626924 GGCACGTCTGGTCCAGGT 61.627 66.667 19.11 7.00 31.51 4.00
4268 4762 1.070105 GCAAGTGGTCCACGTGGTA 59.930 57.895 32.74 17.60 42.38 3.25
4398 4892 1.297364 GCCTAACAGGTACCCGCAA 59.703 57.895 8.74 0.00 37.80 4.85
4494 4988 2.191513 CCAGCATCCAGGCCAATCG 61.192 63.158 5.01 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.