Multiple sequence alignment - TraesCS3A01G498200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G498200 chr3A 100.000 5885 0 0 1 5885 724052119 724058003 0.000000e+00 10868.0
1 TraesCS3A01G498200 chr3A 90.985 477 35 6 5413 5884 243091818 243092291 2.310000e-178 636.0
2 TraesCS3A01G498200 chr3A 82.843 204 25 9 2077 2275 298156294 298156096 2.180000e-39 174.0
3 TraesCS3A01G498200 chrUn 92.500 1840 101 20 4068 5885 45752441 45754265 0.000000e+00 2599.0
4 TraesCS3A01G498200 chrUn 92.404 961 46 16 3118 4069 45751575 45752517 0.000000e+00 1345.0
5 TraesCS3A01G498200 chrUn 85.425 1283 85 55 847 2066 45750329 45751572 0.000000e+00 1240.0
6 TraesCS3A01G498200 chrUn 86.787 333 19 12 27 335 45749048 45749379 1.210000e-91 348.0
7 TraesCS3A01G498200 chrUn 84.884 172 22 4 2947 3116 75923375 75923206 2.820000e-38 171.0
8 TraesCS3A01G498200 chr3B 91.920 1844 102 23 4068 5885 794866569 794868391 0.000000e+00 2536.0
9 TraesCS3A01G498200 chr3B 92.396 960 53 12 3113 4066 794865688 794866633 0.000000e+00 1351.0
10 TraesCS3A01G498200 chr3B 86.771 703 61 23 845 1523 794864402 794865096 0.000000e+00 754.0
11 TraesCS3A01G498200 chr3B 89.744 546 28 8 1539 2078 794865176 794865699 0.000000e+00 673.0
12 TraesCS3A01G498200 chr3B 92.017 476 31 5 5413 5884 753686231 753686703 0.000000e+00 662.0
13 TraesCS3A01G498200 chr3B 83.714 350 27 4 11 330 794859888 794860237 2.660000e-78 303.0
14 TraesCS3A01G498200 chr3B 77.288 295 44 11 5128 5414 753685793 753686072 1.020000e-32 152.0
15 TraesCS3A01G498200 chr3B 79.381 194 35 5 2935 3127 199597306 199597117 1.330000e-26 132.0
16 TraesCS3A01G498200 chr3B 80.682 176 23 9 496 665 794860386 794860556 6.190000e-25 126.0
17 TraesCS3A01G498200 chr3B 77.835 194 38 5 2935 3127 199552967 199552778 1.340000e-21 115.0
18 TraesCS3A01G498200 chr3B 100.000 34 0 0 796 829 794864321 794864354 4.920000e-06 63.9
19 TraesCS3A01G498200 chr3D 92.227 476 29 6 5413 5884 519955139 519954668 0.000000e+00 667.0
20 TraesCS3A01G498200 chr3D 90.756 476 36 6 5413 5884 560862969 560863440 3.870000e-176 628.0
21 TraesCS3A01G498200 chr3D 77.441 297 42 13 5128 5414 519955579 519955298 2.840000e-33 154.0
22 TraesCS3A01G498200 chr3D 77.104 297 43 13 5128 5414 560862529 560862810 1.320000e-31 148.0
23 TraesCS3A01G498200 chr6D 92.017 476 30 6 5413 5884 436880213 436880684 0.000000e+00 662.0
24 TraesCS3A01G498200 chr6D 76.768 297 44 13 5128 5414 436879773 436880054 6.150000e-30 143.0
25 TraesCS3A01G498200 chr5D 92.017 476 30 6 5413 5884 417678024 417677553 0.000000e+00 662.0
26 TraesCS3A01G498200 chr5D 77.104 297 43 13 5128 5414 417678464 417678183 1.320000e-31 148.0
27 TraesCS3A01G498200 chr5B 91.176 476 35 5 5413 5884 651350872 651351344 1.790000e-179 640.0
28 TraesCS3A01G498200 chr4A 90.068 443 39 4 2121 2561 420533179 420533618 2.380000e-158 569.0
29 TraesCS3A01G498200 chr4A 87.850 214 18 4 2866 3079 420534453 420534658 1.640000e-60 244.0
30 TraesCS3A01G498200 chr4A 92.414 145 11 0 2565 2709 420534003 420534147 2.150000e-49 207.0
31 TraesCS3A01G498200 chr4A 86.391 169 23 0 2947 3115 361831255 361831423 1.010000e-42 185.0
32 TraesCS3A01G498200 chr4A 79.487 195 38 2 2934 3127 126437123 126436930 2.860000e-28 137.0
33 TraesCS3A01G498200 chr4A 92.857 70 5 0 2800 2869 420534174 420534243 1.040000e-17 102.0
34 TraesCS3A01G498200 chr1A 78.571 504 61 32 998 1489 431776560 431777028 7.460000e-74 289.0
35 TraesCS3A01G498200 chr1A 81.643 207 36 2 2069 2274 468651154 468651359 2.820000e-38 171.0
36 TraesCS3A01G498200 chr1A 77.500 200 38 7 2931 3127 527972889 527972694 4.820000e-21 113.0
37 TraesCS3A01G498200 chr1D 77.888 502 63 37 998 1489 333496238 333496701 9.720000e-68 268.0
38 TraesCS3A01G498200 chr1D 81.702 235 33 9 2079 2306 437684773 437684542 2.800000e-43 187.0
39 TraesCS3A01G498200 chr1D 81.967 183 33 0 2935 3117 50201172 50201354 7.900000e-34 156.0
40 TraesCS3A01G498200 chr1B 77.689 502 68 30 998 1489 449387453 449387920 3.500000e-67 267.0
41 TraesCS3A01G498200 chr1B 83.243 185 27 4 2935 3118 156856928 156856747 3.650000e-37 167.0
42 TraesCS3A01G498200 chr7A 82.627 236 29 10 2079 2306 56734807 56734576 1.290000e-46 198.0
43 TraesCS3A01G498200 chr2A 87.059 170 22 0 2947 3116 497443059 497442890 6.020000e-45 193.0
44 TraesCS3A01G498200 chr2A 84.127 189 27 3 2947 3134 23985912 23985726 4.690000e-41 180.0
45 TraesCS3A01G498200 chr2A 82.297 209 33 4 2068 2274 34762149 34762355 1.690000e-40 178.0
46 TraesCS3A01G498200 chr2A 77.551 98 22 0 2935 3032 463648388 463648485 6.370000e-05 60.2
47 TraesCS3A01G498200 chr6A 85.475 179 26 0 2947 3125 608070747 608070925 2.800000e-43 187.0
48 TraesCS3A01G498200 chr6A 82.759 203 31 4 2077 2277 337244080 337243880 1.690000e-40 178.0
49 TraesCS3A01G498200 chr5A 85.965 171 24 0 2947 3117 398479122 398478952 3.620000e-42 183.0
50 TraesCS3A01G498200 chr5A 78.309 272 42 11 2079 2337 560108269 560108536 6.100000e-35 159.0
51 TraesCS3A01G498200 chr5A 76.871 294 43 13 5128 5411 20420338 20420616 6.150000e-30 143.0
52 TraesCS3A01G498200 chr2B 85.965 171 24 0 2947 3117 189611207 189611377 3.620000e-42 183.0
53 TraesCS3A01G498200 chr2D 82.775 209 29 7 2068 2274 570155928 570156131 4.690000e-41 180.0
54 TraesCS3A01G498200 chr7B 77.365 296 42 13 5129 5414 125843434 125843154 1.020000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G498200 chr3A 724052119 724058003 5884 False 10868.000000 10868 100.000000 1 5885 1 chr3A.!!$F2 5884
1 TraesCS3A01G498200 chrUn 45749048 45754265 5217 False 1383.000000 2599 89.279000 27 5885 4 chrUn.!!$F1 5858
2 TraesCS3A01G498200 chr3B 794859888 794868391 8503 False 829.557143 2536 89.318143 11 5885 7 chr3B.!!$F2 5874
3 TraesCS3A01G498200 chr3B 753685793 753686703 910 False 407.000000 662 84.652500 5128 5884 2 chr3B.!!$F1 756
4 TraesCS3A01G498200 chr3D 519954668 519955579 911 True 410.500000 667 84.834000 5128 5884 2 chr3D.!!$R1 756
5 TraesCS3A01G498200 chr3D 560862529 560863440 911 False 388.000000 628 83.930000 5128 5884 2 chr3D.!!$F1 756
6 TraesCS3A01G498200 chr6D 436879773 436880684 911 False 402.500000 662 84.392500 5128 5884 2 chr6D.!!$F1 756
7 TraesCS3A01G498200 chr5D 417677553 417678464 911 True 405.000000 662 84.560500 5128 5884 2 chr5D.!!$R1 756
8 TraesCS3A01G498200 chr4A 420533179 420534658 1479 False 280.500000 569 90.797250 2121 3079 4 chr4A.!!$F2 958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 2834 0.039618 AAATCCGAGGGTGCATTGGT 59.960 50.000 0.00 0.0 0.00 3.67 F
1342 5244 0.042731 TTCTTCTCCCCTCCGATGGT 59.957 55.000 0.00 0.0 0.00 3.55 F
1384 5287 0.102120 TTTGTGCCTGACGCTTTTGG 59.898 50.000 0.00 0.0 38.78 3.28 F
1979 5965 0.104120 CTGGTGTGTCGTGGTCTTGA 59.896 55.000 0.00 0.0 0.00 3.02 F
2933 7525 0.246635 GGGAGCTTAGCGACTTGTCA 59.753 55.000 0.00 0.0 0.00 3.58 F
3213 7808 0.449388 GATGCTTCCTTGCAGGTTCG 59.551 55.000 0.00 0.0 46.71 3.95 F
4741 9348 1.070105 GCAAGTGGTCCACGTGGTA 59.930 57.895 32.74 17.6 42.38 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 5946 0.104120 TCAAGACCACGACACACCAG 59.896 55.000 0.00 0.0 0.00 4.00 R
2681 7050 0.248539 CGTTCGTCGGAGGAGAATCC 60.249 60.000 0.31 0.0 46.16 3.01 R
3279 7874 0.314935 GGTTGCCATTGTGGTCACTG 59.685 55.000 2.66 0.0 40.46 3.66 R
3441 8042 0.807496 GCAATTCTGGAGGTCTGCAC 59.193 55.000 0.00 0.0 0.00 4.57 R
4741 9348 0.182061 CCATATCCACTGCCAGCACT 59.818 55.000 0.00 0.0 0.00 4.40 R
4818 9425 0.822532 GATAGTTCGGGCCTCCTCGA 60.823 60.000 0.84 0.0 0.00 4.04 R
5797 10626 6.531594 TCTGCTGTTACTTACTTGATTCATCG 59.468 38.462 0.00 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.863153 CGGAGCCTTTGCAAGACG 59.137 61.111 0.00 0.00 41.13 4.18
18 19 1.667830 CGGAGCCTTTGCAAGACGA 60.668 57.895 0.00 0.00 41.13 4.20
19 20 1.227999 CGGAGCCTTTGCAAGACGAA 61.228 55.000 0.00 0.00 41.13 3.85
20 21 0.519077 GGAGCCTTTGCAAGACGAAG 59.481 55.000 0.00 0.00 41.13 3.79
21 22 1.230324 GAGCCTTTGCAAGACGAAGT 58.770 50.000 0.00 0.00 43.17 3.01
22 23 0.947244 AGCCTTTGCAAGACGAAGTG 59.053 50.000 0.00 0.00 40.69 3.16
23 24 0.663153 GCCTTTGCAAGACGAAGTGT 59.337 50.000 0.00 0.00 38.26 3.55
24 25 1.334149 GCCTTTGCAAGACGAAGTGTC 60.334 52.381 0.00 0.00 42.06 3.67
25 26 3.886454 GCCTTTGCAAGACGAAGTGTCA 61.886 50.000 0.00 0.00 43.29 3.58
58 59 2.159382 GAATTCTTCGTCAAAGGGGCA 58.841 47.619 0.00 0.00 35.54 5.36
166 173 0.530650 GATCCAGATCCGAAGCGCAA 60.531 55.000 11.47 0.00 31.76 4.85
322 359 3.706802 TCGTGAGAGATGAGATGAAGC 57.293 47.619 0.00 0.00 34.84 3.86
353 400 1.685148 GTCCTGAAGGCCATGGATTC 58.315 55.000 18.40 18.49 34.44 2.52
355 402 1.925255 TCCTGAAGGCCATGGATTCTT 59.075 47.619 18.40 15.06 34.44 2.52
356 403 2.312741 TCCTGAAGGCCATGGATTCTTT 59.687 45.455 18.40 0.00 34.44 2.52
357 404 2.429610 CCTGAAGGCCATGGATTCTTTG 59.570 50.000 18.40 12.08 0.00 2.77
359 406 1.137675 GAAGGCCATGGATTCTTTGCC 59.862 52.381 18.40 6.58 39.17 4.52
363 410 1.027357 CCATGGATTCTTTGCCTCCG 58.973 55.000 5.56 0.00 31.36 4.63
366 413 0.322456 TGGATTCTTTGCCTCCGGTG 60.322 55.000 0.00 0.00 31.36 4.94
367 414 1.657751 GGATTCTTTGCCTCCGGTGC 61.658 60.000 0.00 6.56 0.00 5.01
380 428 3.557264 CCTCCGGTGCTAAAAGAGTTTCT 60.557 47.826 0.00 0.00 0.00 2.52
382 430 2.412089 CCGGTGCTAAAAGAGTTTCTCG 59.588 50.000 0.00 0.00 35.36 4.04
384 432 3.660865 GGTGCTAAAAGAGTTTCTCGGA 58.339 45.455 0.00 0.00 35.36 4.55
400 448 3.249189 GACCTGCCAGACACCCCA 61.249 66.667 0.00 0.00 0.00 4.96
401 449 2.532715 ACCTGCCAGACACCCCAT 60.533 61.111 0.00 0.00 0.00 4.00
402 450 2.044650 CCTGCCAGACACCCCATG 60.045 66.667 0.00 0.00 0.00 3.66
403 451 2.044650 CTGCCAGACACCCCATGG 60.045 66.667 4.14 4.14 37.15 3.66
414 462 2.751436 CCCATGGGGCAGTGTTCG 60.751 66.667 24.53 0.00 35.35 3.95
442 506 2.440247 CATGGGGGCCGAGGTTTC 60.440 66.667 0.00 0.00 0.00 2.78
443 507 2.614013 ATGGGGGCCGAGGTTTCT 60.614 61.111 0.00 0.00 0.00 2.52
444 508 2.983879 ATGGGGGCCGAGGTTTCTG 61.984 63.158 0.00 0.00 0.00 3.02
447 511 2.436824 GGGCCGAGGTTTCTGAGC 60.437 66.667 0.00 0.00 0.00 4.26
451 515 2.125512 CGAGGTTTCTGAGCCCCG 60.126 66.667 0.00 0.00 0.00 5.73
452 516 2.943978 CGAGGTTTCTGAGCCCCGT 61.944 63.158 0.00 0.00 0.00 5.28
456 520 1.241990 GGTTTCTGAGCCCCGTTTCC 61.242 60.000 0.00 0.00 0.00 3.13
458 522 0.183971 TTTCTGAGCCCCGTTTCCAA 59.816 50.000 0.00 0.00 0.00 3.53
459 523 0.250727 TTCTGAGCCCCGTTTCCAAG 60.251 55.000 0.00 0.00 0.00 3.61
460 524 1.125093 TCTGAGCCCCGTTTCCAAGA 61.125 55.000 0.00 0.00 0.00 3.02
461 525 0.955919 CTGAGCCCCGTTTCCAAGAC 60.956 60.000 0.00 0.00 0.00 3.01
462 526 1.674651 GAGCCCCGTTTCCAAGACC 60.675 63.158 0.00 0.00 0.00 3.85
465 529 2.428622 CCCGTTTCCAAGACCCGT 59.571 61.111 0.00 0.00 0.00 5.28
466 530 1.964373 CCCGTTTCCAAGACCCGTG 60.964 63.158 0.00 0.00 0.00 4.94
467 531 2.613506 CCGTTTCCAAGACCCGTGC 61.614 63.158 0.00 0.00 0.00 5.34
468 532 1.890041 CGTTTCCAAGACCCGTGCA 60.890 57.895 0.00 0.00 0.00 4.57
469 533 1.440938 CGTTTCCAAGACCCGTGCAA 61.441 55.000 0.00 0.00 0.00 4.08
470 534 0.741915 GTTTCCAAGACCCGTGCAAA 59.258 50.000 0.00 0.00 0.00 3.68
472 536 0.106918 TTCCAAGACCCGTGCAAAGT 60.107 50.000 0.00 0.00 0.00 2.66
474 538 1.141254 TCCAAGACCCGTGCAAAGTTA 59.859 47.619 0.00 0.00 0.00 2.24
476 540 1.535462 CAAGACCCGTGCAAAGTTAGG 59.465 52.381 0.00 0.00 0.00 2.69
477 541 0.605589 AGACCCGTGCAAAGTTAGGC 60.606 55.000 0.00 0.00 0.00 3.93
478 542 0.887387 GACCCGTGCAAAGTTAGGCA 60.887 55.000 0.00 0.00 37.77 4.75
481 545 0.798776 CCGTGCAAAGTTAGGCAGAG 59.201 55.000 2.62 1.46 41.35 3.35
482 546 1.512926 CGTGCAAAGTTAGGCAGAGT 58.487 50.000 2.62 0.00 41.35 3.24
483 547 2.611971 CCGTGCAAAGTTAGGCAGAGTA 60.612 50.000 2.62 0.00 41.35 2.59
484 548 2.668457 CGTGCAAAGTTAGGCAGAGTAG 59.332 50.000 2.62 0.00 41.35 2.57
485 549 3.614150 CGTGCAAAGTTAGGCAGAGTAGA 60.614 47.826 2.62 0.00 41.35 2.59
486 550 4.508662 GTGCAAAGTTAGGCAGAGTAGAT 58.491 43.478 2.62 0.00 41.35 1.98
487 551 4.938226 GTGCAAAGTTAGGCAGAGTAGATT 59.062 41.667 2.62 0.00 41.35 2.40
490 554 5.064071 GCAAAGTTAGGCAGAGTAGATTGAC 59.936 44.000 0.00 0.00 0.00 3.18
491 555 6.166279 CAAAGTTAGGCAGAGTAGATTGACA 58.834 40.000 0.00 0.00 0.00 3.58
499 586 1.519455 GTAGATTGACAGCGCCGCT 60.519 57.895 5.39 5.39 40.77 5.52
501 588 0.806102 TAGATTGACAGCGCCGCTTC 60.806 55.000 9.89 11.50 36.40 3.86
517 604 2.124122 GCTTCGTGCGGTGAAATTTTT 58.876 42.857 0.00 0.00 0.00 1.94
569 659 3.482436 AGGATTTGAACGCCAAACACTA 58.518 40.909 5.82 0.00 46.41 2.74
571 661 4.522789 AGGATTTGAACGCCAAACACTATT 59.477 37.500 5.82 0.00 46.41 1.73
586 689 2.094894 CACTATTGCTTGCTTCCTCGTG 59.905 50.000 0.00 0.00 0.00 4.35
635 738 0.183014 ATGCTCCAGCTGCTTATGCT 59.817 50.000 8.66 0.00 42.66 3.79
665 768 1.605710 CGCTGAGATATTTTGGGGCTG 59.394 52.381 0.00 0.00 0.00 4.85
668 771 3.635591 CTGAGATATTTTGGGGCTGGTT 58.364 45.455 0.00 0.00 0.00 3.67
673 776 4.597075 AGATATTTTGGGGCTGGTTGTTTT 59.403 37.500 0.00 0.00 0.00 2.43
674 777 2.409948 TTTTGGGGCTGGTTGTTTTG 57.590 45.000 0.00 0.00 0.00 2.44
675 778 1.280457 TTTGGGGCTGGTTGTTTTGT 58.720 45.000 0.00 0.00 0.00 2.83
676 779 1.280457 TTGGGGCTGGTTGTTTTGTT 58.720 45.000 0.00 0.00 0.00 2.83
677 780 0.827368 TGGGGCTGGTTGTTTTGTTC 59.173 50.000 0.00 0.00 0.00 3.18
678 781 0.827368 GGGGCTGGTTGTTTTGTTCA 59.173 50.000 0.00 0.00 0.00 3.18
680 783 2.158827 GGGGCTGGTTGTTTTGTTCATT 60.159 45.455 0.00 0.00 0.00 2.57
683 786 2.287644 GCTGGTTGTTTTGTTCATTGGC 59.712 45.455 0.00 0.00 0.00 4.52
685 788 3.791245 TGGTTGTTTTGTTCATTGGCTC 58.209 40.909 0.00 0.00 0.00 4.70
687 790 2.132740 TGTTTTGTTCATTGGCTCGC 57.867 45.000 0.00 0.00 0.00 5.03
688 791 1.269517 TGTTTTGTTCATTGGCTCGCC 60.270 47.619 0.00 0.00 0.00 5.54
689 792 1.000274 GTTTTGTTCATTGGCTCGCCT 60.000 47.619 9.65 0.00 36.94 5.52
691 794 0.881118 TTGTTCATTGGCTCGCCTTC 59.119 50.000 9.65 0.00 36.94 3.46
692 795 0.960364 TGTTCATTGGCTCGCCTTCC 60.960 55.000 9.65 0.00 36.94 3.46
694 797 2.125147 CATTGGCTCGCCTTCCGA 60.125 61.111 9.65 0.00 45.15 4.55
695 798 1.745115 CATTGGCTCGCCTTCCGAA 60.745 57.895 9.65 0.00 46.81 4.30
697 800 1.899437 ATTGGCTCGCCTTCCGAAGA 61.899 55.000 9.87 0.00 46.81 2.87
699 802 1.375523 GGCTCGCCTTCCGAAGAAA 60.376 57.895 9.87 0.00 46.81 2.52
700 803 0.744771 GGCTCGCCTTCCGAAGAAAT 60.745 55.000 9.87 0.00 46.81 2.17
702 805 1.291132 CTCGCCTTCCGAAGAAATCC 58.709 55.000 9.87 0.00 46.81 3.01
703 806 0.459585 TCGCCTTCCGAAGAAATCCG 60.460 55.000 9.87 4.68 44.21 4.18
704 807 1.722082 GCCTTCCGAAGAAATCCGC 59.278 57.895 9.87 0.00 0.00 5.54
706 809 0.739813 CCTTCCGAAGAAATCCGCGT 60.740 55.000 9.87 0.00 0.00 6.01
707 810 1.076332 CTTCCGAAGAAATCCGCGTT 58.924 50.000 4.92 0.00 0.00 4.84
708 811 1.463444 CTTCCGAAGAAATCCGCGTTT 59.537 47.619 4.92 0.00 0.00 3.60
709 812 0.793861 TCCGAAGAAATCCGCGTTTG 59.206 50.000 4.92 0.00 0.00 2.93
717 2806 0.798776 AATCCGCGTTTGCTCTTCAG 59.201 50.000 4.92 0.00 39.65 3.02
724 2813 3.120683 CGCGTTTGCTCTTCAGTTTCATA 60.121 43.478 0.00 0.00 39.65 2.15
726 2815 5.212194 GCGTTTGCTCTTCAGTTTCATAAA 58.788 37.500 0.00 0.00 38.39 1.40
727 2816 5.685511 GCGTTTGCTCTTCAGTTTCATAAAA 59.314 36.000 0.00 0.00 38.39 1.52
728 2817 6.198216 GCGTTTGCTCTTCAGTTTCATAAAAA 59.802 34.615 0.00 0.00 38.39 1.94
729 2818 7.096065 GCGTTTGCTCTTCAGTTTCATAAAAAT 60.096 33.333 0.00 0.00 38.39 1.82
731 2820 8.703336 GTTTGCTCTTCAGTTTCATAAAAATCC 58.297 33.333 0.00 0.00 0.00 3.01
732 2821 6.611381 TGCTCTTCAGTTTCATAAAAATCCG 58.389 36.000 0.00 0.00 0.00 4.18
733 2822 6.429692 TGCTCTTCAGTTTCATAAAAATCCGA 59.570 34.615 0.00 0.00 0.00 4.55
734 2823 6.963805 GCTCTTCAGTTTCATAAAAATCCGAG 59.036 38.462 0.00 0.00 0.00 4.63
735 2824 7.377766 TCTTCAGTTTCATAAAAATCCGAGG 57.622 36.000 0.00 0.00 0.00 4.63
736 2825 6.374333 TCTTCAGTTTCATAAAAATCCGAGGG 59.626 38.462 0.00 0.00 0.00 4.30
740 2829 3.358111 TCATAAAAATCCGAGGGTGCA 57.642 42.857 0.00 0.00 0.00 4.57
741 2830 3.897239 TCATAAAAATCCGAGGGTGCAT 58.103 40.909 0.00 0.00 0.00 3.96
742 2831 4.277476 TCATAAAAATCCGAGGGTGCATT 58.723 39.130 0.00 0.00 0.00 3.56
744 2833 1.185315 AAAATCCGAGGGTGCATTGG 58.815 50.000 0.00 0.00 0.00 3.16
745 2834 0.039618 AAATCCGAGGGTGCATTGGT 59.960 50.000 0.00 0.00 0.00 3.67
746 2835 0.394352 AATCCGAGGGTGCATTGGTC 60.394 55.000 0.00 0.00 0.00 4.02
747 2836 2.593468 ATCCGAGGGTGCATTGGTCG 62.593 60.000 0.00 0.00 0.00 4.79
749 2838 2.351276 GAGGGTGCATTGGTCGGT 59.649 61.111 0.00 0.00 0.00 4.69
750 2839 1.303317 GAGGGTGCATTGGTCGGTT 60.303 57.895 0.00 0.00 0.00 4.44
751 2840 0.893727 GAGGGTGCATTGGTCGGTTT 60.894 55.000 0.00 0.00 0.00 3.27
752 2841 0.469144 AGGGTGCATTGGTCGGTTTT 60.469 50.000 0.00 0.00 0.00 2.43
753 2842 0.391228 GGGTGCATTGGTCGGTTTTT 59.609 50.000 0.00 0.00 0.00 1.94
776 3081 2.108157 TCACCACCGTGACAGTGC 59.892 61.111 0.00 0.00 44.20 4.40
777 3082 2.108976 CACCACCGTGACAGTGCT 59.891 61.111 0.00 0.00 43.14 4.40
780 3085 0.814010 ACCACCGTGACAGTGCTTTC 60.814 55.000 0.00 0.00 33.75 2.62
781 3086 1.507141 CCACCGTGACAGTGCTTTCC 61.507 60.000 0.00 0.00 33.75 3.13
787 3092 2.353704 CGTGACAGTGCTTTCCATCCTA 60.354 50.000 0.00 0.00 0.00 2.94
791 3096 4.187694 GACAGTGCTTTCCATCCTAGAAG 58.812 47.826 0.00 0.00 0.00 2.85
792 3097 3.054802 ACAGTGCTTTCCATCCTAGAAGG 60.055 47.826 0.00 0.00 36.46 3.46
793 3098 2.507471 AGTGCTTTCCATCCTAGAAGGG 59.493 50.000 0.00 0.00 35.59 3.95
794 3099 1.846439 TGCTTTCCATCCTAGAAGGGG 59.154 52.381 0.00 0.00 35.59 4.79
902 4763 1.883084 CCATGAACCTACCTCGCGC 60.883 63.158 0.00 0.00 0.00 6.86
942 4803 2.637872 CCCCTCTCTCTATCTCTCTCGT 59.362 54.545 0.00 0.00 0.00 4.18
967 4834 3.470888 CCAGATTCCGGCGACCCT 61.471 66.667 9.30 0.00 0.00 4.34
1133 5025 1.202867 CGTACCTCCTACCCTACTCCC 60.203 61.905 0.00 0.00 0.00 4.30
1175 5070 3.209812 CTCGTCGCCGGATCTGGA 61.210 66.667 25.54 0.50 33.95 3.86
1176 5071 3.187699 CTCGTCGCCGGATCTGGAG 62.188 68.421 25.54 21.49 33.95 3.86
1318 5220 3.459145 GCGTAAGATTTCTCTTCCCCTC 58.541 50.000 0.00 0.00 40.92 4.30
1322 5224 3.793842 AGATTTCTCTTCCCCTCCTCT 57.206 47.619 0.00 0.00 0.00 3.69
1323 5225 4.087243 AGATTTCTCTTCCCCTCCTCTT 57.913 45.455 0.00 0.00 0.00 2.85
1326 5228 3.569135 TTCTCTTCCCCTCCTCTTTCT 57.431 47.619 0.00 0.00 0.00 2.52
1330 5232 3.445987 TCTTCCCCTCCTCTTTCTTCTC 58.554 50.000 0.00 0.00 0.00 2.87
1333 5235 1.208706 CCCTCCTCTTTCTTCTCCCC 58.791 60.000 0.00 0.00 0.00 4.81
1342 5244 0.042731 TTCTTCTCCCCTCCGATGGT 59.957 55.000 0.00 0.00 0.00 3.55
1371 5274 2.573167 CGGCGCGTGTATTTGTGC 60.573 61.111 8.43 0.00 40.76 4.57
1379 5282 1.156736 GTGTATTTGTGCCTGACGCT 58.843 50.000 0.00 0.00 38.78 5.07
1382 5285 2.621055 TGTATTTGTGCCTGACGCTTTT 59.379 40.909 0.00 0.00 38.78 2.27
1383 5286 2.138596 ATTTGTGCCTGACGCTTTTG 57.861 45.000 0.00 0.00 38.78 2.44
1384 5287 0.102120 TTTGTGCCTGACGCTTTTGG 59.898 50.000 0.00 0.00 38.78 3.28
1386 5289 1.034838 TGTGCCTGACGCTTTTGGTT 61.035 50.000 0.00 0.00 38.78 3.67
1387 5290 0.317854 GTGCCTGACGCTTTTGGTTC 60.318 55.000 0.00 0.00 38.78 3.62
1388 5291 1.285950 GCCTGACGCTTTTGGTTCC 59.714 57.895 0.00 0.00 0.00 3.62
1389 5292 1.574428 CCTGACGCTTTTGGTTCCG 59.426 57.895 0.00 0.00 0.00 4.30
1440 5345 5.026038 AGATCAAGATCCTCAAGAAGCTG 57.974 43.478 6.45 0.00 38.58 4.24
1495 5401 3.820425 CCTCCCCAGGTGCTTACA 58.180 61.111 0.00 0.00 34.60 2.41
1508 5414 3.126343 GGTGCTTACACTGAATTAACCCG 59.874 47.826 0.00 0.00 46.57 5.28
1523 5429 2.200373 ACCCGAAACTCCCTCAATTG 57.800 50.000 0.00 0.00 0.00 2.32
1525 5431 1.004277 CCCGAAACTCCCTCAATTGGA 59.996 52.381 5.42 0.00 0.00 3.53
1526 5432 2.084546 CCGAAACTCCCTCAATTGGAC 58.915 52.381 5.42 0.00 0.00 4.02
1527 5433 2.290323 CCGAAACTCCCTCAATTGGACT 60.290 50.000 5.42 0.00 0.00 3.85
1528 5434 3.055385 CCGAAACTCCCTCAATTGGACTA 60.055 47.826 5.42 0.00 0.00 2.59
1529 5435 4.184629 CGAAACTCCCTCAATTGGACTAG 58.815 47.826 5.42 1.80 0.00 2.57
1530 5436 4.081642 CGAAACTCCCTCAATTGGACTAGA 60.082 45.833 5.42 0.00 0.00 2.43
1531 5437 5.395768 CGAAACTCCCTCAATTGGACTAGAT 60.396 44.000 5.42 0.00 0.00 1.98
1533 5439 4.366267 ACTCCCTCAATTGGACTAGATGT 58.634 43.478 5.42 0.00 0.00 3.06
1534 5440 4.163078 ACTCCCTCAATTGGACTAGATGTG 59.837 45.833 5.42 0.00 0.00 3.21
1537 5443 4.194640 CCTCAATTGGACTAGATGTGTGG 58.805 47.826 5.42 0.00 0.00 4.17
1585 5558 2.203209 GAATTCGCAGGCCCGGAT 60.203 61.111 0.73 0.00 0.00 4.18
1643 5619 5.064441 ACACCATTCTTTGCAATTCTAGC 57.936 39.130 0.00 0.00 0.00 3.42
1651 5627 1.031571 TGCAATTCTAGCGCCCTTGG 61.032 55.000 2.29 0.00 33.85 3.61
1652 5628 1.728490 GCAATTCTAGCGCCCTTGGG 61.728 60.000 2.29 0.32 0.00 4.12
1723 5699 2.190841 TCGTGACGCCTGTCTGACA 61.191 57.895 10.50 10.50 45.70 3.58
1739 5715 2.452006 GACACCTTGTCGTGTTGTTG 57.548 50.000 0.00 0.00 46.85 3.33
1757 5737 5.431420 TGTTGTTGCACAAAATAGTCGAT 57.569 34.783 3.74 0.00 40.15 3.59
1871 5856 0.175760 TGCCGCAGATCAAGGTAGAC 59.824 55.000 0.00 0.00 0.00 2.59
1876 5861 1.834263 GCAGATCAAGGTAGACCCACT 59.166 52.381 0.00 0.00 36.42 4.00
1878 5863 1.834263 AGATCAAGGTAGACCCACTGC 59.166 52.381 0.00 0.00 36.42 4.40
1888 5873 2.282462 CCCACTGCCCTGTTCACC 60.282 66.667 0.00 0.00 0.00 4.02
1891 5876 2.847234 ACTGCCCTGTTCACCCGA 60.847 61.111 0.00 0.00 0.00 5.14
1911 5897 2.814336 GACTTCTGCGATTTCCCTTTGT 59.186 45.455 0.00 0.00 0.00 2.83
1912 5898 3.222603 ACTTCTGCGATTTCCCTTTGTT 58.777 40.909 0.00 0.00 0.00 2.83
1913 5899 3.636764 ACTTCTGCGATTTCCCTTTGTTT 59.363 39.130 0.00 0.00 0.00 2.83
1914 5900 3.641437 TCTGCGATTTCCCTTTGTTTG 57.359 42.857 0.00 0.00 0.00 2.93
1926 5912 3.258872 CCCTTTGTTTGATGCCAATGAGA 59.741 43.478 0.00 0.00 31.46 3.27
1960 5946 4.245660 TGTTTGTGGATTGATCTCGTCTC 58.754 43.478 0.00 0.00 0.00 3.36
1961 5947 4.021104 TGTTTGTGGATTGATCTCGTCTCT 60.021 41.667 0.00 0.00 0.00 3.10
1967 5953 3.443037 GATTGATCTCGTCTCTGGTGTG 58.557 50.000 0.00 0.00 0.00 3.82
1969 5955 1.813178 TGATCTCGTCTCTGGTGTGTC 59.187 52.381 0.00 0.00 0.00 3.67
1973 5959 1.371758 CGTCTCTGGTGTGTCGTGG 60.372 63.158 0.00 0.00 0.00 4.94
1979 5965 0.104120 CTGGTGTGTCGTGGTCTTGA 59.896 55.000 0.00 0.00 0.00 3.02
1980 5966 0.537653 TGGTGTGTCGTGGTCTTGAA 59.462 50.000 0.00 0.00 0.00 2.69
2067 6053 5.290643 GCTGCATCGAGATATCAAAGGTATC 59.709 44.000 5.32 0.00 0.00 2.24
2102 6088 9.793259 TTGAGAGAATTCCTTATTTAACACTGT 57.207 29.630 0.65 0.00 0.00 3.55
2103 6089 9.436957 TGAGAGAATTCCTTATTTAACACTGTC 57.563 33.333 0.65 0.00 0.00 3.51
2104 6090 9.660180 GAGAGAATTCCTTATTTAACACTGTCT 57.340 33.333 0.65 0.00 0.00 3.41
2136 6122 9.629878 TTTAGTTCCCTATTTGACACTGTAAAA 57.370 29.630 0.00 0.00 0.00 1.52
2230 6216 7.135089 TCTAACGCTGTTAAATTGCACATAA 57.865 32.000 0.00 0.00 0.00 1.90
2240 6226 9.593134 TGTTAAATTGCACATAAAAAGACACTT 57.407 25.926 0.00 0.00 0.00 3.16
2243 6229 7.851822 AATTGCACATAAAAAGACACTTACG 57.148 32.000 0.00 0.00 0.00 3.18
2244 6230 4.778904 TGCACATAAAAAGACACTTACGC 58.221 39.130 0.00 0.00 0.00 4.42
2263 6249 1.747206 GCCCCTCATGTGGTATGTGAC 60.747 57.143 12.65 0.00 0.00 3.67
2312 6299 1.812922 GACATGACCAGCTCGCCTG 60.813 63.158 0.00 0.00 41.41 4.85
2368 6355 1.462731 GCATGCAACACCAGTTCCCA 61.463 55.000 14.21 0.00 35.28 4.37
2370 6357 2.445427 CATGCAACACCAGTTCCCATA 58.555 47.619 0.00 0.00 35.28 2.74
2422 6409 4.695928 CAGGCTCTGGTAAAAGTAAAGACC 59.304 45.833 0.00 0.00 0.00 3.85
2451 6439 9.846248 ATATTCAGAAGCATCAAAAACTGTAAC 57.154 29.630 0.00 0.00 0.00 2.50
2461 6449 6.403866 TCAAAAACTGTAACTGATGCCAAT 57.596 33.333 0.00 0.00 0.00 3.16
2471 6459 6.772233 TGTAACTGATGCCAATACATATTGCT 59.228 34.615 6.16 0.00 41.23 3.91
2525 6513 7.782897 TCTATATCCATTTCTGTTCCTCGAT 57.217 36.000 0.00 0.00 0.00 3.59
2534 6522 4.313277 TCTGTTCCTCGATGCAAGATAG 57.687 45.455 0.00 0.00 0.00 2.08
2537 6525 3.958147 TGTTCCTCGATGCAAGATAGGTA 59.042 43.478 0.00 0.00 0.00 3.08
2541 6529 5.004448 TCCTCGATGCAAGATAGGTAGTAG 58.996 45.833 0.00 0.00 0.00 2.57
2550 6538 6.549736 TGCAAGATAGGTAGTAGTATCAAGCA 59.450 38.462 11.18 11.18 36.34 3.91
2555 6543 8.387039 AGATAGGTAGTAGTATCAAGCAGATGA 58.613 37.037 2.28 0.00 37.57 2.92
2561 6549 9.026074 GTAGTAGTATCAAGCAGATGAAAAGAC 57.974 37.037 2.28 0.00 37.57 3.01
2563 6551 6.981762 AGTATCAAGCAGATGAAAAGACAG 57.018 37.500 2.28 0.00 37.57 3.51
2647 7016 1.001048 CCGCCCAGCATTATGTTCATG 60.001 52.381 0.00 0.00 0.00 3.07
2648 7017 1.677576 CGCCCAGCATTATGTTCATGT 59.322 47.619 0.00 0.00 0.00 3.21
2649 7018 2.099592 CGCCCAGCATTATGTTCATGTT 59.900 45.455 0.00 0.00 0.00 2.71
2650 7019 3.429272 CGCCCAGCATTATGTTCATGTTT 60.429 43.478 0.00 0.00 0.00 2.83
2659 7028 6.400568 CATTATGTTCATGTTTGAAGCCCTT 58.599 36.000 0.00 0.00 42.41 3.95
2661 7030 2.224018 TGTTCATGTTTGAAGCCCTTGC 60.224 45.455 0.00 0.00 42.41 4.01
2675 7044 2.648059 CCCTTGCTGTTCCTTGGATAG 58.352 52.381 0.00 0.00 0.00 2.08
2757 7136 4.728102 CGTTGGCCGCCGTGTAGA 62.728 66.667 4.58 0.00 0.00 2.59
2758 7137 3.116531 GTTGGCCGCCGTGTAGAC 61.117 66.667 4.58 0.00 0.00 2.59
2759 7138 4.382320 TTGGCCGCCGTGTAGACC 62.382 66.667 4.58 0.00 0.00 3.85
2761 7140 4.382320 GGCCGCCGTGTAGACCAA 62.382 66.667 0.00 0.00 0.00 3.67
2762 7141 3.116531 GCCGCCGTGTAGACCAAC 61.117 66.667 0.00 0.00 0.00 3.77
2763 7142 2.433664 CCGCCGTGTAGACCAACC 60.434 66.667 0.00 0.00 0.00 3.77
2764 7143 2.340809 CGCCGTGTAGACCAACCA 59.659 61.111 0.00 0.00 0.00 3.67
2765 7144 1.736645 CGCCGTGTAGACCAACCAG 60.737 63.158 0.00 0.00 0.00 4.00
2766 7145 2.033194 GCCGTGTAGACCAACCAGC 61.033 63.158 0.00 0.00 0.00 4.85
2767 7146 1.375523 CCGTGTAGACCAACCAGCC 60.376 63.158 0.00 0.00 0.00 4.85
2768 7147 1.736645 CGTGTAGACCAACCAGCCG 60.737 63.158 0.00 0.00 0.00 5.52
2769 7148 1.375523 GTGTAGACCAACCAGCCGG 60.376 63.158 0.00 0.00 38.77 6.13
2783 7162 4.431035 CCGGTATAGGGCACAACG 57.569 61.111 0.00 0.00 0.00 4.10
2784 7163 1.518774 CCGGTATAGGGCACAACGT 59.481 57.895 0.00 0.00 0.00 3.99
2785 7164 0.746063 CCGGTATAGGGCACAACGTA 59.254 55.000 0.00 0.00 0.00 3.57
2786 7165 1.269413 CCGGTATAGGGCACAACGTAG 60.269 57.143 0.00 0.00 0.00 3.51
2787 7166 1.269413 CGGTATAGGGCACAACGTAGG 60.269 57.143 0.00 0.00 0.00 3.18
2788 7167 1.758862 GGTATAGGGCACAACGTAGGT 59.241 52.381 0.00 0.00 0.00 3.08
2789 7168 2.482490 GGTATAGGGCACAACGTAGGTG 60.482 54.545 14.12 14.12 39.25 4.00
2790 7169 1.563924 ATAGGGCACAACGTAGGTGA 58.436 50.000 20.65 3.77 38.54 4.02
2791 7170 0.604578 TAGGGCACAACGTAGGTGAC 59.395 55.000 20.65 18.27 43.70 3.67
2792 7171 3.961729 GGCACAACGTAGGTGACC 58.038 61.111 20.65 16.73 38.37 4.02
2793 7172 1.670083 GGCACAACGTAGGTGACCC 60.670 63.158 20.65 11.30 38.37 4.46
2794 7173 1.370064 GCACAACGTAGGTGACCCT 59.630 57.895 20.65 0.00 45.51 4.34
2795 7174 0.949105 GCACAACGTAGGTGACCCTG 60.949 60.000 20.65 0.81 42.67 4.45
2796 7175 0.949105 CACAACGTAGGTGACCCTGC 60.949 60.000 13.40 0.00 42.67 4.85
2797 7176 1.119574 ACAACGTAGGTGACCCTGCT 61.120 55.000 0.00 0.00 42.67 4.24
2798 7177 0.670546 CAACGTAGGTGACCCTGCTG 60.671 60.000 0.00 0.00 42.67 4.41
2921 7513 0.765510 GGGATGTATTCGGGGAGCTT 59.234 55.000 0.00 0.00 0.00 3.74
2922 7514 1.975680 GGGATGTATTCGGGGAGCTTA 59.024 52.381 0.00 0.00 0.00 3.09
2923 7515 2.028020 GGGATGTATTCGGGGAGCTTAG 60.028 54.545 0.00 0.00 0.00 2.18
2924 7516 2.613223 GGATGTATTCGGGGAGCTTAGC 60.613 54.545 0.00 0.00 0.00 3.09
2925 7517 0.387929 TGTATTCGGGGAGCTTAGCG 59.612 55.000 0.00 0.00 0.00 4.26
2926 7518 0.672342 GTATTCGGGGAGCTTAGCGA 59.328 55.000 0.00 0.00 0.00 4.93
2927 7519 0.672342 TATTCGGGGAGCTTAGCGAC 59.328 55.000 0.00 0.00 0.00 5.19
2928 7520 1.043673 ATTCGGGGAGCTTAGCGACT 61.044 55.000 0.00 0.00 0.00 4.18
2929 7521 1.255667 TTCGGGGAGCTTAGCGACTT 61.256 55.000 0.00 0.00 0.00 3.01
2930 7522 1.519455 CGGGGAGCTTAGCGACTTG 60.519 63.158 0.00 0.00 0.00 3.16
2931 7523 1.597461 GGGGAGCTTAGCGACTTGT 59.403 57.895 0.00 0.00 0.00 3.16
2932 7524 0.460459 GGGGAGCTTAGCGACTTGTC 60.460 60.000 0.00 0.00 0.00 3.18
2933 7525 0.246635 GGGAGCTTAGCGACTTGTCA 59.753 55.000 0.00 0.00 0.00 3.58
2934 7526 1.337823 GGGAGCTTAGCGACTTGTCAA 60.338 52.381 0.00 0.00 0.00 3.18
2941 7533 6.574350 AGCTTAGCGACTTGTCAATATTACT 58.426 36.000 0.00 0.00 0.00 2.24
2943 7535 6.292381 GCTTAGCGACTTGTCAATATTACTGG 60.292 42.308 1.59 0.00 0.00 4.00
2955 7547 1.382914 ATTACTGGAGGGGCAAAGGT 58.617 50.000 0.00 0.00 0.00 3.50
2957 7549 0.770557 TACTGGAGGGGCAAAGGTGT 60.771 55.000 0.00 0.00 0.00 4.16
2963 7555 2.039418 GAGGGGCAAAGGTGTCTTTTT 58.961 47.619 0.00 0.00 40.92 1.94
2966 7558 2.287970 GGGGCAAAGGTGTCTTTTTACG 60.288 50.000 0.00 0.00 40.92 3.18
2980 7572 7.219344 GTGTCTTTTTACGTGCAATTTAACAGT 59.781 33.333 0.00 0.00 0.00 3.55
2985 7577 9.517609 TTTTTACGTGCAATTTAACAGTGTTAT 57.482 25.926 16.26 0.91 0.00 1.89
3038 7630 8.879427 AGGGCATAAAATTTAGACTTAGTGTT 57.121 30.769 0.00 0.00 0.00 3.32
3039 7631 9.969001 AGGGCATAAAATTTAGACTTAGTGTTA 57.031 29.630 0.00 0.00 0.00 2.41
3079 7671 7.797121 ATTTCTTGGTGTCAAATAGGGAAAT 57.203 32.000 0.00 0.00 32.64 2.17
3080 7672 6.588719 TTCTTGGTGTCAAATAGGGAAATG 57.411 37.500 0.00 0.00 31.77 2.32
3081 7673 5.886609 TCTTGGTGTCAAATAGGGAAATGA 58.113 37.500 0.00 0.00 31.77 2.57
3082 7674 6.310941 TCTTGGTGTCAAATAGGGAAATGAA 58.689 36.000 0.00 0.00 31.77 2.57
3083 7675 6.780031 TCTTGGTGTCAAATAGGGAAATGAAA 59.220 34.615 0.00 0.00 31.77 2.69
3084 7676 7.454380 TCTTGGTGTCAAATAGGGAAATGAAAT 59.546 33.333 0.00 0.00 31.77 2.17
3085 7677 7.552050 TGGTGTCAAATAGGGAAATGAAATT 57.448 32.000 0.00 0.00 38.98 1.82
3147 7739 2.289547 ACATCACAACCGGAGTTTTTCG 59.710 45.455 9.46 0.00 32.45 3.46
3184 7777 1.311859 CTTGTTGGCTGTTGCTGAGA 58.688 50.000 0.00 0.00 39.59 3.27
3213 7808 0.449388 GATGCTTCCTTGCAGGTTCG 59.551 55.000 0.00 0.00 46.71 3.95
3279 7874 1.092345 GGCTTGCGAGGTCATTCTCC 61.092 60.000 2.37 0.00 0.00 3.71
3285 7880 1.737363 GCGAGGTCATTCTCCAGTGAC 60.737 57.143 0.00 0.00 43.02 3.67
3318 7913 2.029380 CCTGACTAACCGTGTCATCACA 60.029 50.000 0.00 0.00 44.02 3.58
3333 7928 8.251026 CGTGTCATCACATTATGGTATAGGTAT 58.749 37.037 0.00 0.00 44.02 2.73
3338 7933 6.707290 TCACATTATGGTATAGGTATGGCAC 58.293 40.000 0.00 0.00 0.00 5.01
3363 7958 1.204941 ACTTCTGCCCACATAGTCGTC 59.795 52.381 0.00 0.00 0.00 4.20
3399 7994 1.910819 GTTTATGCATGCGTCGTTTGG 59.089 47.619 17.45 0.00 0.00 3.28
3412 8007 4.045783 CGTCGTTTGGTGCCTTTTATTTT 58.954 39.130 0.00 0.00 0.00 1.82
3439 8040 9.665719 ACTACTCATTGTTTTTGTTGGATTTTT 57.334 25.926 0.00 0.00 0.00 1.94
3457 8058 2.957402 TTTGTGCAGACCTCCAGAAT 57.043 45.000 0.00 0.00 0.00 2.40
3465 8066 3.683802 CAGACCTCCAGAATTGCTTCTT 58.316 45.455 0.00 0.00 39.78 2.52
3522 8123 1.892474 TCTGTGGGCTGTATTTTTGCC 59.108 47.619 0.00 0.00 45.42 4.52
3531 8132 3.366374 GCTGTATTTTTGCCGAGCTTCTT 60.366 43.478 0.00 0.00 0.00 2.52
3571 8172 4.721776 TGCCAGGAAAGAATGAGGTATACT 59.278 41.667 2.25 0.00 0.00 2.12
3610 8211 6.382869 GCTTTCAGCCATCAAGTGTATAAT 57.617 37.500 0.00 0.00 34.48 1.28
3649 8250 5.841783 TGATTTAAGCCCCCTTTTTACACTT 59.158 36.000 0.00 0.00 32.47 3.16
3889 8490 9.624697 CATTGTTATGTTGTGTAGCTTTGTATT 57.375 29.630 0.00 0.00 0.00 1.89
3916 8518 2.925563 GCTGGTGCTCACATTTTTATGC 59.074 45.455 2.21 0.00 36.03 3.14
3978 8581 8.560124 AGAGGATGTTAACTTTAGATCCATCT 57.440 34.615 18.92 15.49 40.86 2.90
4002 8605 8.250332 TCTCAGGTATAAAATGACAAATTTGGC 58.750 33.333 21.74 19.79 36.50 4.52
4011 8614 2.941720 TGACAAATTTGGCAAGTTTGGC 59.058 40.909 35.71 35.03 44.72 4.52
4021 8624 1.997606 GCAAGTTTGGCAATCAGATGC 59.002 47.619 10.67 12.56 45.67 3.91
4022 8625 2.353406 GCAAGTTTGGCAATCAGATGCT 60.353 45.455 18.38 2.67 45.68 3.79
4023 8626 3.863400 GCAAGTTTGGCAATCAGATGCTT 60.863 43.478 18.38 7.04 45.68 3.91
4024 8627 4.618927 GCAAGTTTGGCAATCAGATGCTTA 60.619 41.667 18.38 0.00 45.68 3.09
4025 8628 5.657474 CAAGTTTGGCAATCAGATGCTTAT 58.343 37.500 10.67 0.00 45.68 1.73
4026 8629 5.927281 AGTTTGGCAATCAGATGCTTATT 57.073 34.783 10.67 0.00 45.68 1.40
4027 8630 6.290294 AGTTTGGCAATCAGATGCTTATTT 57.710 33.333 10.67 0.00 45.68 1.40
4028 8631 6.335777 AGTTTGGCAATCAGATGCTTATTTC 58.664 36.000 10.67 0.00 45.68 2.17
4029 8632 4.924305 TGGCAATCAGATGCTTATTTCC 57.076 40.909 0.00 0.00 45.68 3.13
4030 8633 4.539726 TGGCAATCAGATGCTTATTTCCT 58.460 39.130 0.00 0.00 45.68 3.36
4031 8634 4.957954 TGGCAATCAGATGCTTATTTCCTT 59.042 37.500 0.00 0.00 45.68 3.36
4032 8635 5.422970 TGGCAATCAGATGCTTATTTCCTTT 59.577 36.000 0.00 0.00 45.68 3.11
4033 8636 6.070653 TGGCAATCAGATGCTTATTTCCTTTT 60.071 34.615 0.00 0.00 45.68 2.27
4034 8637 6.478016 GGCAATCAGATGCTTATTTCCTTTTC 59.522 38.462 0.00 0.00 45.68 2.29
4035 8638 7.263496 GCAATCAGATGCTTATTTCCTTTTCT 58.737 34.615 0.00 0.00 43.06 2.52
4036 8639 7.763071 GCAATCAGATGCTTATTTCCTTTTCTT 59.237 33.333 0.00 0.00 43.06 2.52
4037 8640 9.649167 CAATCAGATGCTTATTTCCTTTTCTTT 57.351 29.630 0.00 0.00 0.00 2.52
4038 8641 9.866798 AATCAGATGCTTATTTCCTTTTCTTTC 57.133 29.630 0.00 0.00 0.00 2.62
4039 8642 8.641498 TCAGATGCTTATTTCCTTTTCTTTCT 57.359 30.769 0.00 0.00 0.00 2.52
4040 8643 9.082313 TCAGATGCTTATTTCCTTTTCTTTCTT 57.918 29.630 0.00 0.00 0.00 2.52
4041 8644 9.702494 CAGATGCTTATTTCCTTTTCTTTCTTT 57.298 29.630 0.00 0.00 0.00 2.52
4042 8645 9.702494 AGATGCTTATTTCCTTTTCTTTCTTTG 57.298 29.630 0.00 0.00 0.00 2.77
4043 8646 8.837788 ATGCTTATTTCCTTTTCTTTCTTTGG 57.162 30.769 0.00 0.00 0.00 3.28
4044 8647 7.216494 TGCTTATTTCCTTTTCTTTCTTTGGG 58.784 34.615 0.00 0.00 0.00 4.12
4045 8648 6.147821 GCTTATTTCCTTTTCTTTCTTTGGGC 59.852 38.462 0.00 0.00 0.00 5.36
4046 8649 4.415881 TTTCCTTTTCTTTCTTTGGGCC 57.584 40.909 0.00 0.00 0.00 5.80
4047 8650 3.328535 TCCTTTTCTTTCTTTGGGCCT 57.671 42.857 4.53 0.00 0.00 5.19
4048 8651 2.965147 TCCTTTTCTTTCTTTGGGCCTG 59.035 45.455 4.53 0.00 0.00 4.85
4049 8652 2.700371 CCTTTTCTTTCTTTGGGCCTGT 59.300 45.455 4.53 0.00 0.00 4.00
4050 8653 3.493176 CCTTTTCTTTCTTTGGGCCTGTG 60.493 47.826 4.53 0.00 0.00 3.66
4051 8654 2.452600 TTCTTTCTTTGGGCCTGTGT 57.547 45.000 4.53 0.00 0.00 3.72
4052 8655 3.586470 TTCTTTCTTTGGGCCTGTGTA 57.414 42.857 4.53 0.00 0.00 2.90
4053 8656 3.806949 TCTTTCTTTGGGCCTGTGTAT 57.193 42.857 4.53 0.00 0.00 2.29
4054 8657 3.420893 TCTTTCTTTGGGCCTGTGTATG 58.579 45.455 4.53 0.00 0.00 2.39
4055 8658 3.073798 TCTTTCTTTGGGCCTGTGTATGA 59.926 43.478 4.53 0.00 0.00 2.15
4056 8659 3.737559 TTCTTTGGGCCTGTGTATGAT 57.262 42.857 4.53 0.00 0.00 2.45
4057 8660 4.853468 TTCTTTGGGCCTGTGTATGATA 57.147 40.909 4.53 0.00 0.00 2.15
4058 8661 4.853468 TCTTTGGGCCTGTGTATGATAA 57.147 40.909 4.53 0.00 0.00 1.75
4059 8662 5.186256 TCTTTGGGCCTGTGTATGATAAA 57.814 39.130 4.53 0.00 0.00 1.40
4060 8663 5.575157 TCTTTGGGCCTGTGTATGATAAAA 58.425 37.500 4.53 0.00 0.00 1.52
4061 8664 5.652014 TCTTTGGGCCTGTGTATGATAAAAG 59.348 40.000 4.53 1.54 0.00 2.27
4062 8665 4.584638 TGGGCCTGTGTATGATAAAAGT 57.415 40.909 4.53 0.00 0.00 2.66
4063 8666 4.929479 TGGGCCTGTGTATGATAAAAGTT 58.071 39.130 4.53 0.00 0.00 2.66
4064 8667 5.329399 TGGGCCTGTGTATGATAAAAGTTT 58.671 37.500 4.53 0.00 0.00 2.66
4065 8668 6.486056 TGGGCCTGTGTATGATAAAAGTTTA 58.514 36.000 4.53 0.00 0.00 2.01
4066 8669 7.122715 TGGGCCTGTGTATGATAAAAGTTTAT 58.877 34.615 4.53 0.00 36.14 1.40
4067 8670 7.284489 TGGGCCTGTGTATGATAAAAGTTTATC 59.716 37.037 14.31 14.31 45.77 1.75
4104 8707 7.662669 AGTTTTGCAATCAAATGCTTAATTCCT 59.337 29.630 0.00 0.00 46.54 3.36
4108 8711 8.031848 TGCAATCAAATGCTTAATTCCTTTTC 57.968 30.769 0.67 0.00 46.54 2.29
4109 8712 7.879160 TGCAATCAAATGCTTAATTCCTTTTCT 59.121 29.630 0.67 0.00 46.54 2.52
4121 8725 5.894298 ATTCCTTTTCTTTCTTTTGGCCT 57.106 34.783 3.32 0.00 0.00 5.19
4248 8855 1.567649 ACTGATCCCTTGCCATGTGAT 59.432 47.619 0.00 0.00 0.00 3.06
4260 8867 2.354821 GCCATGTGATCCGAAAAGGTAC 59.645 50.000 0.00 0.00 41.99 3.34
4267 8874 3.256383 TGATCCGAAAAGGTACGTTCTGA 59.744 43.478 0.52 0.95 41.99 3.27
4321 8928 8.897872 TTTCCTTTCTAATAACTTCGTGAACT 57.102 30.769 0.00 0.00 0.00 3.01
4322 8929 8.897872 TTCCTTTCTAATAACTTCGTGAACTT 57.102 30.769 0.00 0.00 0.00 2.66
4323 8930 8.530269 TCCTTTCTAATAACTTCGTGAACTTC 57.470 34.615 0.00 0.00 0.00 3.01
4357 8964 9.466497 AAGTTATGTCATGACCATTAAATGTCT 57.534 29.630 22.85 8.67 0.00 3.41
4374 8981 3.261580 TGTCTGATGATACAGTTTGCCG 58.738 45.455 0.00 0.00 38.79 5.69
4377 8984 3.056179 TCTGATGATACAGTTTGCCGTCA 60.056 43.478 0.00 0.00 38.79 4.35
4434 9041 2.671963 CAGCAGCAGAGGCAAGCA 60.672 61.111 0.00 0.00 43.22 3.91
4515 9122 2.191513 CCAGCATCCAGGCCAATCG 61.192 63.158 5.01 0.00 0.00 3.34
4611 9218 1.297364 GCCTAACAGGTACCCGCAA 59.703 57.895 8.74 0.00 37.80 4.85
4741 9348 1.070105 GCAAGTGGTCCACGTGGTA 59.930 57.895 32.74 17.60 42.38 3.25
4818 9425 3.626924 GGCACGTCTGGTCCAGGT 61.627 66.667 19.11 7.00 31.51 4.00
4899 9506 9.251440 AGCTGGCAATAATATTTGTCATATCAT 57.749 29.630 0.00 0.00 40.20 2.45
4906 9513 8.702163 ATAATATTTGTCATATCATGTCGCGA 57.298 30.769 3.71 3.71 0.00 5.87
4966 9573 7.648908 TGTAGAATGTTTGCTGTTCAAATTCTG 59.351 33.333 12.69 0.00 45.43 3.02
4971 9578 6.336566 TGTTTGCTGTTCAAATTCTGCTTTA 58.663 32.000 0.00 0.00 45.43 1.85
5069 9676 4.551702 TTGTAGCAGAACAGGCTATTGA 57.448 40.909 0.00 0.00 44.86 2.57
5183 9791 8.739039 TGACCATTAATGAAATGTTCTTGTAGG 58.261 33.333 17.23 0.00 43.03 3.18
5216 9824 8.962111 GTCTGAAAAGAAAAGTTTGCTATCAAG 58.038 33.333 11.32 7.44 33.12 3.02
5275 9883 5.789774 GCAACGTGCATATAAATACTTGC 57.210 39.130 0.00 0.00 44.26 4.01
5276 9884 5.510671 GCAACGTGCATATAAATACTTGCT 58.489 37.500 0.00 0.00 44.26 3.91
5277 9885 5.971202 GCAACGTGCATATAAATACTTGCTT 59.029 36.000 0.00 0.00 44.26 3.91
5278 9886 6.140737 GCAACGTGCATATAAATACTTGCTTC 59.859 38.462 0.00 0.00 44.26 3.86
5279 9887 7.409697 CAACGTGCATATAAATACTTGCTTCT 58.590 34.615 0.00 0.00 36.10 2.85
5280 9888 7.553881 ACGTGCATATAAATACTTGCTTCTT 57.446 32.000 0.00 0.00 36.10 2.52
5281 9889 7.985476 ACGTGCATATAAATACTTGCTTCTTT 58.015 30.769 0.00 0.00 36.10 2.52
5282 9890 7.910162 ACGTGCATATAAATACTTGCTTCTTTG 59.090 33.333 0.00 0.00 36.10 2.77
5316 9924 9.793252 ATCACAAGAATCATATAAACACTTTGC 57.207 29.630 0.00 0.00 0.00 3.68
5318 9926 9.630098 CACAAGAATCATATAAACACTTTGCTT 57.370 29.630 0.00 0.00 0.00 3.91
5319 9927 9.846248 ACAAGAATCATATAAACACTTTGCTTC 57.154 29.630 0.00 0.00 0.00 3.86
5335 9999 4.265904 TGCTTCTTAGGATCAACGACAA 57.734 40.909 0.00 0.00 0.00 3.18
5368 10032 0.236711 GGACGAGTCGACGACTGAAA 59.763 55.000 33.68 0.00 43.53 2.69
5604 10432 2.373169 AGACAGGATTCAGGTCAGCAAA 59.627 45.455 8.92 0.00 34.04 3.68
5715 10543 1.067776 CGAGCAGTCCCGTCTAACTTT 60.068 52.381 0.00 0.00 0.00 2.66
5770 10598 3.532641 ATGAAGCCAAGAAAGTCCCTT 57.467 42.857 0.00 0.00 0.00 3.95
5772 10600 4.021102 TGAAGCCAAGAAAGTCCCTTAG 57.979 45.455 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.939934 TGACACTTCGTCTTGCAAAGG 59.060 47.619 0.00 0.00 46.24 3.11
7 8 2.096819 GGTTGACACTTCGTCTTGCAAA 59.903 45.455 0.00 0.00 45.60 3.68
8 9 1.668751 GGTTGACACTTCGTCTTGCAA 59.331 47.619 0.00 0.00 45.60 4.08
9 10 1.295792 GGTTGACACTTCGTCTTGCA 58.704 50.000 0.00 0.00 45.60 4.08
12 13 0.748450 TCCGGTTGACACTTCGTCTT 59.252 50.000 0.00 0.00 45.60 3.01
13 14 0.748450 TTCCGGTTGACACTTCGTCT 59.252 50.000 0.00 0.00 45.60 4.18
14 15 1.525619 CTTTCCGGTTGACACTTCGTC 59.474 52.381 0.00 0.00 45.61 4.20
15 16 1.137479 TCTTTCCGGTTGACACTTCGT 59.863 47.619 0.00 0.00 0.00 3.85
16 17 1.860676 TCTTTCCGGTTGACACTTCG 58.139 50.000 0.00 0.00 0.00 3.79
17 18 2.548480 CCTTCTTTCCGGTTGACACTTC 59.452 50.000 0.00 0.00 0.00 3.01
18 19 2.171870 TCCTTCTTTCCGGTTGACACTT 59.828 45.455 0.00 0.00 0.00 3.16
19 20 1.766496 TCCTTCTTTCCGGTTGACACT 59.234 47.619 0.00 0.00 0.00 3.55
20 21 2.249844 TCCTTCTTTCCGGTTGACAC 57.750 50.000 0.00 0.00 0.00 3.67
21 22 3.502123 ATTCCTTCTTTCCGGTTGACA 57.498 42.857 0.00 0.00 0.00 3.58
22 23 4.072839 AGAATTCCTTCTTTCCGGTTGAC 58.927 43.478 0.00 0.00 38.63 3.18
23 24 4.367039 AGAATTCCTTCTTTCCGGTTGA 57.633 40.909 0.00 0.00 38.63 3.18
124 131 1.853963 AACTACCTCTGTCGCCTGAT 58.146 50.000 0.00 0.00 0.00 2.90
166 173 2.430610 GCTCTGGCCGTCTCCTGAT 61.431 63.158 0.00 0.00 34.28 2.90
260 294 1.141858 CTTGAATCTAGGGGAGTGGCC 59.858 57.143 0.00 0.00 0.00 5.36
301 338 3.005684 GGCTTCATCTCATCTCTCACGAT 59.994 47.826 0.00 0.00 0.00 3.73
304 341 2.741612 CGGCTTCATCTCATCTCTCAC 58.258 52.381 0.00 0.00 0.00 3.51
313 350 2.964389 GGCGAGCGGCTTCATCTC 60.964 66.667 2.97 0.00 42.94 2.75
335 382 1.600058 AGAATCCATGGCCTTCAGGA 58.400 50.000 21.77 6.39 37.39 3.86
337 384 2.159142 GCAAAGAATCCATGGCCTTCAG 60.159 50.000 21.77 14.67 0.00 3.02
359 406 3.665190 AGAAACTCTTTTAGCACCGGAG 58.335 45.455 9.46 0.00 0.00 4.63
363 410 3.432592 GTCCGAGAAACTCTTTTAGCACC 59.567 47.826 0.00 0.00 0.00 5.01
366 413 3.680458 CAGGTCCGAGAAACTCTTTTAGC 59.320 47.826 0.00 0.00 0.00 3.09
367 414 3.680458 GCAGGTCCGAGAAACTCTTTTAG 59.320 47.826 0.00 0.00 0.00 1.85
380 428 3.311110 GGTGTCTGGCAGGTCCGA 61.311 66.667 15.73 0.00 37.80 4.55
382 430 4.035102 GGGGTGTCTGGCAGGTCC 62.035 72.222 15.73 13.81 0.00 4.46
384 432 2.532715 ATGGGGTGTCTGGCAGGT 60.533 61.111 15.73 0.00 0.00 4.00
400 448 4.740822 GCCCGAACACTGCCCCAT 62.741 66.667 0.00 0.00 0.00 4.00
403 451 4.966787 TTGGCCCGAACACTGCCC 62.967 66.667 0.00 0.00 44.72 5.36
406 454 2.281761 AGCTTGGCCCGAACACTG 60.282 61.111 0.00 0.00 0.00 3.66
407 455 2.032681 GAGCTTGGCCCGAACACT 59.967 61.111 0.00 0.00 0.00 3.55
408 456 3.056328 GGAGCTTGGCCCGAACAC 61.056 66.667 0.00 0.00 0.00 3.32
409 457 2.905996 ATGGAGCTTGGCCCGAACA 61.906 57.895 0.00 0.00 0.00 3.18
412 460 4.113815 CCATGGAGCTTGGCCCGA 62.114 66.667 5.56 0.00 0.00 5.14
414 462 4.847367 CCCCATGGAGCTTGGCCC 62.847 72.222 15.22 0.00 32.60 5.80
442 506 0.955919 GTCTTGGAAACGGGGCTCAG 60.956 60.000 0.00 0.00 0.00 3.35
443 507 1.072505 GTCTTGGAAACGGGGCTCA 59.927 57.895 0.00 0.00 0.00 4.26
444 508 1.674651 GGTCTTGGAAACGGGGCTC 60.675 63.158 0.00 0.00 0.00 4.70
447 511 2.359478 CGGGTCTTGGAAACGGGG 60.359 66.667 0.00 0.00 0.00 5.73
451 515 0.741915 TTTGCACGGGTCTTGGAAAC 59.258 50.000 0.00 0.00 30.27 2.78
452 516 1.028905 CTTTGCACGGGTCTTGGAAA 58.971 50.000 0.00 0.00 33.76 3.13
456 520 1.535462 CCTAACTTTGCACGGGTCTTG 59.465 52.381 0.00 0.00 0.00 3.02
458 522 0.605589 GCCTAACTTTGCACGGGTCT 60.606 55.000 0.00 0.00 0.00 3.85
459 523 0.887387 TGCCTAACTTTGCACGGGTC 60.887 55.000 0.00 0.00 31.31 4.46
460 524 0.889186 CTGCCTAACTTTGCACGGGT 60.889 55.000 0.00 0.00 33.17 5.28
461 525 0.605319 TCTGCCTAACTTTGCACGGG 60.605 55.000 0.00 0.00 33.17 5.28
462 526 0.798776 CTCTGCCTAACTTTGCACGG 59.201 55.000 0.00 0.00 33.17 4.94
465 529 4.826274 ATCTACTCTGCCTAACTTTGCA 57.174 40.909 0.00 0.00 35.86 4.08
466 530 5.064071 GTCAATCTACTCTGCCTAACTTTGC 59.936 44.000 0.00 0.00 0.00 3.68
467 531 6.166279 TGTCAATCTACTCTGCCTAACTTTG 58.834 40.000 0.00 0.00 0.00 2.77
468 532 6.360370 TGTCAATCTACTCTGCCTAACTTT 57.640 37.500 0.00 0.00 0.00 2.66
469 533 5.625656 GCTGTCAATCTACTCTGCCTAACTT 60.626 44.000 0.00 0.00 0.00 2.66
470 534 4.142049 GCTGTCAATCTACTCTGCCTAACT 60.142 45.833 0.00 0.00 0.00 2.24
472 536 3.181486 CGCTGTCAATCTACTCTGCCTAA 60.181 47.826 0.00 0.00 0.00 2.69
474 538 1.135915 CGCTGTCAATCTACTCTGCCT 59.864 52.381 0.00 0.00 0.00 4.75
476 540 0.926846 GCGCTGTCAATCTACTCTGC 59.073 55.000 0.00 0.00 0.00 4.26
477 541 1.565305 GGCGCTGTCAATCTACTCTG 58.435 55.000 7.64 0.00 0.00 3.35
478 542 0.101399 CGGCGCTGTCAATCTACTCT 59.899 55.000 8.45 0.00 0.00 3.24
481 545 1.084370 AAGCGGCGCTGTCAATCTAC 61.084 55.000 37.09 0.00 39.62 2.59
482 546 0.806102 GAAGCGGCGCTGTCAATCTA 60.806 55.000 37.09 0.00 39.62 1.98
483 547 2.046892 AAGCGGCGCTGTCAATCT 60.047 55.556 37.09 15.49 39.62 2.40
484 548 2.401195 GAAGCGGCGCTGTCAATC 59.599 61.111 37.09 24.47 39.62 2.67
485 549 3.490759 CGAAGCGGCGCTGTCAAT 61.491 61.111 37.09 20.19 39.62 2.57
486 550 4.961511 ACGAAGCGGCGCTGTCAA 62.962 61.111 37.09 0.00 39.62 3.18
517 604 3.290948 ACACAAGTTTAGACCAGGCAA 57.709 42.857 0.00 0.00 0.00 4.52
518 605 4.131596 GTTACACAAGTTTAGACCAGGCA 58.868 43.478 0.00 0.00 0.00 4.75
519 606 3.185797 CGTTACACAAGTTTAGACCAGGC 59.814 47.826 0.00 0.00 0.00 4.85
521 608 4.150098 GCTCGTTACACAAGTTTAGACCAG 59.850 45.833 0.00 0.00 0.00 4.00
522 609 4.053295 GCTCGTTACACAAGTTTAGACCA 58.947 43.478 0.00 0.00 0.00 4.02
523 610 4.150098 CAGCTCGTTACACAAGTTTAGACC 59.850 45.833 0.00 0.00 0.00 3.85
526 613 5.345202 CCTACAGCTCGTTACACAAGTTTAG 59.655 44.000 0.00 0.00 0.00 1.85
527 614 5.009911 TCCTACAGCTCGTTACACAAGTTTA 59.990 40.000 0.00 0.00 0.00 2.01
532 619 4.530710 AATCCTACAGCTCGTTACACAA 57.469 40.909 0.00 0.00 0.00 3.33
535 622 4.794278 TCAAATCCTACAGCTCGTTACA 57.206 40.909 0.00 0.00 0.00 2.41
569 659 1.609208 AACACGAGGAAGCAAGCAAT 58.391 45.000 0.00 0.00 0.00 3.56
571 661 1.388547 AAAACACGAGGAAGCAAGCA 58.611 45.000 0.00 0.00 0.00 3.91
597 700 1.486211 TCCCCTTTCCAACGCAAAAA 58.514 45.000 0.00 0.00 0.00 1.94
598 701 1.342819 CATCCCCTTTCCAACGCAAAA 59.657 47.619 0.00 0.00 0.00 2.44
599 702 0.965439 CATCCCCTTTCCAACGCAAA 59.035 50.000 0.00 0.00 0.00 3.68
600 703 1.531739 GCATCCCCTTTCCAACGCAA 61.532 55.000 0.00 0.00 0.00 4.85
601 704 1.976474 GCATCCCCTTTCCAACGCA 60.976 57.895 0.00 0.00 0.00 5.24
602 705 1.657751 GAGCATCCCCTTTCCAACGC 61.658 60.000 0.00 0.00 0.00 4.84
603 706 2.482326 GAGCATCCCCTTTCCAACG 58.518 57.895 0.00 0.00 0.00 4.10
635 738 6.038603 CCAAAATATCTCAGCGATTCTTCCAA 59.961 38.462 0.00 0.00 33.48 3.53
665 768 2.794350 CGAGCCAATGAACAAAACAACC 59.206 45.455 0.00 0.00 0.00 3.77
668 771 1.269517 GGCGAGCCAATGAACAAAACA 60.270 47.619 9.58 0.00 35.81 2.83
673 776 0.960364 GGAAGGCGAGCCAATGAACA 60.960 55.000 17.18 0.00 38.92 3.18
674 777 1.803289 GGAAGGCGAGCCAATGAAC 59.197 57.895 17.18 1.01 38.92 3.18
675 778 1.745115 CGGAAGGCGAGCCAATGAA 60.745 57.895 17.18 0.00 38.92 2.57
676 779 2.125147 CGGAAGGCGAGCCAATGA 60.125 61.111 17.18 0.00 38.92 2.57
677 780 1.709147 CTTCGGAAGGCGAGCCAATG 61.709 60.000 17.18 3.30 38.92 2.82
678 781 1.450312 CTTCGGAAGGCGAGCCAAT 60.450 57.895 17.18 4.44 38.92 3.16
680 783 2.107041 TTTCTTCGGAAGGCGAGCCA 62.107 55.000 17.18 0.00 38.92 4.75
683 786 1.291132 GGATTTCTTCGGAAGGCGAG 58.709 55.000 17.19 0.00 35.19 5.03
685 788 2.006772 CGGATTTCTTCGGAAGGCG 58.993 57.895 17.19 0.00 35.19 5.52
687 790 0.739813 ACGCGGATTTCTTCGGAAGG 60.740 55.000 17.19 1.89 35.19 3.46
688 791 1.076332 AACGCGGATTTCTTCGGAAG 58.924 50.000 12.47 11.54 35.19 3.46
689 792 1.195900 CAAACGCGGATTTCTTCGGAA 59.804 47.619 12.47 0.00 0.00 4.30
691 794 0.793104 GCAAACGCGGATTTCTTCGG 60.793 55.000 12.47 0.00 0.00 4.30
692 795 0.165944 AGCAAACGCGGATTTCTTCG 59.834 50.000 12.47 0.00 0.00 3.79
694 797 1.523758 AGAGCAAACGCGGATTTCTT 58.476 45.000 12.47 0.00 0.00 2.52
695 798 1.464997 GAAGAGCAAACGCGGATTTCT 59.535 47.619 12.47 4.76 0.00 2.52
697 800 1.197721 CTGAAGAGCAAACGCGGATTT 59.802 47.619 12.47 0.00 0.00 2.17
699 802 0.320771 ACTGAAGAGCAAACGCGGAT 60.321 50.000 12.47 0.00 0.00 4.18
700 803 0.531974 AACTGAAGAGCAAACGCGGA 60.532 50.000 12.47 0.00 0.00 5.54
702 805 1.003972 TGAAACTGAAGAGCAAACGCG 60.004 47.619 3.53 3.53 0.00 6.01
703 806 2.755836 TGAAACTGAAGAGCAAACGC 57.244 45.000 0.00 0.00 0.00 4.84
704 807 7.678194 TTTTTATGAAACTGAAGAGCAAACG 57.322 32.000 0.00 0.00 0.00 3.60
706 809 7.594758 CGGATTTTTATGAAACTGAAGAGCAAA 59.405 33.333 0.00 0.00 0.00 3.68
707 810 7.040755 TCGGATTTTTATGAAACTGAAGAGCAA 60.041 33.333 0.00 0.00 0.00 3.91
708 811 6.429692 TCGGATTTTTATGAAACTGAAGAGCA 59.570 34.615 0.00 0.00 0.00 4.26
709 812 6.842163 TCGGATTTTTATGAAACTGAAGAGC 58.158 36.000 0.00 0.00 0.00 4.09
717 2806 4.082463 TGCACCCTCGGATTTTTATGAAAC 60.082 41.667 0.00 0.00 0.00 2.78
724 2813 1.550072 CCAATGCACCCTCGGATTTTT 59.450 47.619 0.00 0.00 0.00 1.94
726 2815 0.039618 ACCAATGCACCCTCGGATTT 59.960 50.000 0.00 0.00 0.00 2.17
727 2816 0.394352 GACCAATGCACCCTCGGATT 60.394 55.000 0.00 0.00 0.00 3.01
728 2817 1.224592 GACCAATGCACCCTCGGAT 59.775 57.895 0.00 0.00 0.00 4.18
729 2818 2.668632 GACCAATGCACCCTCGGA 59.331 61.111 0.00 0.00 0.00 4.55
731 2820 2.819595 CCGACCAATGCACCCTCG 60.820 66.667 0.00 0.00 0.00 4.63
732 2821 0.893727 AAACCGACCAATGCACCCTC 60.894 55.000 0.00 0.00 0.00 4.30
733 2822 0.469144 AAAACCGACCAATGCACCCT 60.469 50.000 0.00 0.00 0.00 4.34
734 2823 0.391228 AAAAACCGACCAATGCACCC 59.609 50.000 0.00 0.00 0.00 4.61
735 2824 3.978460 AAAAACCGACCAATGCACC 57.022 47.368 0.00 0.00 0.00 5.01
765 3070 0.798776 GATGGAAAGCACTGTCACGG 59.201 55.000 0.00 0.00 0.00 4.94
768 3073 3.173151 TCTAGGATGGAAAGCACTGTCA 58.827 45.455 0.00 0.00 0.00 3.58
773 3078 2.422093 CCCCTTCTAGGATGGAAAGCAC 60.422 54.545 0.00 0.00 37.67 4.40
774 3079 1.846439 CCCCTTCTAGGATGGAAAGCA 59.154 52.381 0.00 0.00 37.67 3.91
775 3080 2.105649 CTCCCCTTCTAGGATGGAAAGC 59.894 54.545 0.00 0.00 37.67 3.51
776 3081 3.658725 TCTCCCCTTCTAGGATGGAAAG 58.341 50.000 0.00 0.00 37.67 2.62
777 3082 3.795755 TCTCCCCTTCTAGGATGGAAA 57.204 47.619 0.00 0.00 37.67 3.13
780 3085 2.175202 CGATCTCCCCTTCTAGGATGG 58.825 57.143 0.00 0.00 37.67 3.51
781 3086 2.175202 CCGATCTCCCCTTCTAGGATG 58.825 57.143 0.00 0.00 37.67 3.51
787 3092 0.399233 CCTTCCCGATCTCCCCTTCT 60.399 60.000 0.00 0.00 0.00 2.85
791 3096 1.141185 ATTTCCTTCCCGATCTCCCC 58.859 55.000 0.00 0.00 0.00 4.81
792 3097 3.368531 CGATATTTCCTTCCCGATCTCCC 60.369 52.174 0.00 0.00 0.00 4.30
793 3098 3.368531 CCGATATTTCCTTCCCGATCTCC 60.369 52.174 0.00 0.00 0.00 3.71
794 3099 3.510360 TCCGATATTTCCTTCCCGATCTC 59.490 47.826 0.00 0.00 0.00 2.75
879 4740 2.192175 GGTAGGTTCATGGGCCGG 59.808 66.667 0.00 0.00 0.00 6.13
902 4763 3.157949 GAGAGGAGAAGGGCCGGG 61.158 72.222 2.18 0.00 0.00 5.73
942 4803 2.127869 CCGGAATCTGGCTCGGAGA 61.128 63.158 9.69 0.00 44.69 3.71
964 4831 2.105930 GAGACGCTGCTGCTAGGG 59.894 66.667 14.03 7.79 36.97 3.53
1133 5025 2.522193 GTAGCGAGAGGGGAGGGG 60.522 72.222 0.00 0.00 0.00 4.79
1318 5220 0.827368 CGGAGGGGAGAAGAAAGAGG 59.173 60.000 0.00 0.00 0.00 3.69
1322 5224 1.204146 CCATCGGAGGGGAGAAGAAA 58.796 55.000 0.00 0.00 0.00 2.52
1323 5225 0.042731 ACCATCGGAGGGGAGAAGAA 59.957 55.000 13.92 0.00 0.00 2.52
1326 5228 1.689233 CCACCATCGGAGGGGAGAA 60.689 63.158 13.92 0.00 32.15 2.87
1330 5232 4.489771 GCACCACCATCGGAGGGG 62.490 72.222 13.92 5.31 39.91 4.79
1371 5274 1.164041 ACGGAACCAAAAGCGTCAGG 61.164 55.000 0.00 0.00 0.00 3.86
1379 5282 1.135333 GGAACTGCAACGGAACCAAAA 59.865 47.619 0.00 0.00 0.00 2.44
1382 5285 1.527380 GGGAACTGCAACGGAACCA 60.527 57.895 0.00 0.00 0.00 3.67
1383 5286 2.265904 GGGGAACTGCAACGGAACC 61.266 63.158 0.00 0.00 0.00 3.62
1384 5287 0.893727 ATGGGGAACTGCAACGGAAC 60.894 55.000 0.00 0.00 0.00 3.62
1386 5289 1.002624 GATGGGGAACTGCAACGGA 60.003 57.895 0.00 0.00 0.00 4.69
1387 5290 1.303236 TGATGGGGAACTGCAACGG 60.303 57.895 0.00 0.00 0.00 4.44
1388 5291 1.875963 GTGATGGGGAACTGCAACG 59.124 57.895 0.00 0.00 0.00 4.10
1389 5292 1.586154 CCGTGATGGGGAACTGCAAC 61.586 60.000 0.00 0.00 0.00 4.17
1440 5345 1.298859 GGATGACGTTCTGGTGGTGC 61.299 60.000 0.00 0.00 0.00 5.01
1493 5399 4.070009 GGAGTTTCGGGTTAATTCAGTGT 58.930 43.478 0.00 0.00 0.00 3.55
1495 5401 3.329814 AGGGAGTTTCGGGTTAATTCAGT 59.670 43.478 0.00 0.00 0.00 3.41
1508 5414 5.422214 TCTAGTCCAATTGAGGGAGTTTC 57.578 43.478 7.12 0.00 38.92 2.78
1523 5429 5.830991 AGAGAATAGACCACACATCTAGTCC 59.169 44.000 6.00 0.11 42.19 3.85
1525 5431 6.427441 TGAGAGAATAGACCACACATCTAGT 58.573 40.000 0.00 0.00 32.27 2.57
1526 5432 6.951062 TGAGAGAATAGACCACACATCTAG 57.049 41.667 0.00 0.00 32.27 2.43
1527 5433 6.892456 AGTTGAGAGAATAGACCACACATCTA 59.108 38.462 0.00 0.00 33.27 1.98
1528 5434 5.719085 AGTTGAGAGAATAGACCACACATCT 59.281 40.000 0.00 0.00 0.00 2.90
1529 5435 5.809562 CAGTTGAGAGAATAGACCACACATC 59.190 44.000 0.00 0.00 0.00 3.06
1530 5436 5.481824 TCAGTTGAGAGAATAGACCACACAT 59.518 40.000 0.00 0.00 0.00 3.21
1531 5437 4.832823 TCAGTTGAGAGAATAGACCACACA 59.167 41.667 0.00 0.00 0.00 3.72
1533 5439 4.082733 CGTCAGTTGAGAGAATAGACCACA 60.083 45.833 0.00 0.00 0.00 4.17
1534 5440 4.416620 CGTCAGTTGAGAGAATAGACCAC 58.583 47.826 0.00 0.00 0.00 4.16
1537 5443 4.201970 CCTCCGTCAGTTGAGAGAATAGAC 60.202 50.000 1.24 0.00 0.00 2.59
1585 5558 2.602267 TTCCCTTGCTCGTCCCGA 60.602 61.111 0.00 0.00 0.00 5.14
1588 5561 2.436824 GGCTTCCCTTGCTCGTCC 60.437 66.667 0.00 0.00 0.00 4.79
1615 5588 5.895636 ATTGCAAAGAATGGTGTAATCGA 57.104 34.783 1.71 0.00 0.00 3.59
1621 5594 4.379813 CGCTAGAATTGCAAAGAATGGTGT 60.380 41.667 1.71 0.00 0.00 4.16
1643 5619 1.300853 CAAAGCAAACCCAAGGGCG 60.301 57.895 4.70 0.00 39.32 6.13
1651 5627 1.331447 CCAAGCAAAGCAAAGCAAACC 59.669 47.619 0.00 0.00 0.00 3.27
1652 5628 1.331447 CCCAAGCAAAGCAAAGCAAAC 59.669 47.619 0.00 0.00 0.00 2.93
1723 5699 1.135517 GCAACAACAACACGACAAGGT 60.136 47.619 0.00 0.00 0.00 3.50
1739 5715 4.419522 ACCATCGACTATTTTGTGCAAC 57.580 40.909 0.00 0.00 37.35 4.17
1757 5737 2.039348 GCTCCCCTTGTACTTGTTACCA 59.961 50.000 0.00 0.00 0.00 3.25
1871 5856 2.282462 GGTGAACAGGGCAGTGGG 60.282 66.667 0.00 0.00 0.00 4.61
1876 5861 2.391724 GAAGTCGGGTGAACAGGGCA 62.392 60.000 0.00 0.00 0.00 5.36
1878 5863 0.320771 CAGAAGTCGGGTGAACAGGG 60.321 60.000 0.00 0.00 0.00 4.45
1888 5873 0.108138 AGGGAAATCGCAGAAGTCGG 60.108 55.000 0.14 0.00 43.58 4.79
1891 5876 2.863809 ACAAAGGGAAATCGCAGAAGT 58.136 42.857 0.14 0.00 43.58 3.01
1960 5946 0.104120 TCAAGACCACGACACACCAG 59.896 55.000 0.00 0.00 0.00 4.00
1961 5947 0.537653 TTCAAGACCACGACACACCA 59.462 50.000 0.00 0.00 0.00 4.17
1967 5953 1.804748 GGACCAATTCAAGACCACGAC 59.195 52.381 0.00 0.00 0.00 4.34
1969 5955 1.806542 CTGGACCAATTCAAGACCACG 59.193 52.381 0.00 0.00 0.00 4.94
1973 5959 2.508526 AGCACTGGACCAATTCAAGAC 58.491 47.619 0.00 0.00 0.00 3.01
1979 5965 3.719268 TCATGTAGCACTGGACCAATT 57.281 42.857 0.00 0.00 0.00 2.32
1980 5966 3.614092 CTTCATGTAGCACTGGACCAAT 58.386 45.455 0.00 0.00 0.00 3.16
2078 6064 9.660180 AGACAGTGTTAAATAAGGAATTCTCTC 57.340 33.333 5.23 0.00 0.00 3.20
2094 6080 9.856162 AGGGAACTAAAATTTAAGACAGTGTTA 57.144 29.630 0.00 0.00 40.61 2.41
2095 6081 8.762481 AGGGAACTAAAATTTAAGACAGTGTT 57.238 30.769 0.00 0.00 40.61 3.32
2136 6122 7.802117 TCGATGTTAGATAGGGAAGGAATTTT 58.198 34.615 0.00 0.00 0.00 1.82
2140 6126 5.455872 ACTCGATGTTAGATAGGGAAGGAA 58.544 41.667 0.00 0.00 0.00 3.36
2141 6127 5.063017 ACTCGATGTTAGATAGGGAAGGA 57.937 43.478 0.00 0.00 0.00 3.36
2142 6128 5.074115 AGACTCGATGTTAGATAGGGAAGG 58.926 45.833 0.00 0.00 0.00 3.46
2143 6129 7.747155 TTAGACTCGATGTTAGATAGGGAAG 57.253 40.000 0.00 0.00 0.00 3.46
2203 6189 5.180304 TGTGCAATTTAACAGCGTTAGATGA 59.820 36.000 0.00 0.00 37.19 2.92
2212 6198 8.003784 GTGTCTTTTTATGTGCAATTTAACAGC 58.996 33.333 0.00 0.00 0.00 4.40
2230 6216 1.418637 TGAGGGGCGTAAGTGTCTTTT 59.581 47.619 0.00 0.00 41.68 2.27
2240 6226 0.756294 CATACCACATGAGGGGCGTA 59.244 55.000 14.11 0.00 0.00 4.42
2243 6229 0.546122 TCACATACCACATGAGGGGC 59.454 55.000 14.11 0.00 0.00 5.80
2244 6230 2.332063 GTCACATACCACATGAGGGG 57.668 55.000 14.11 7.61 0.00 4.79
2294 6281 1.812922 CAGGCGAGCTGGTCATGTC 60.813 63.158 2.32 0.00 0.00 3.06
2368 6355 1.606668 CCCTTTGTGTGCGTGTGTTAT 59.393 47.619 0.00 0.00 0.00 1.89
2370 6357 0.678366 TCCCTTTGTGTGCGTGTGTT 60.678 50.000 0.00 0.00 0.00 3.32
2413 6400 9.717942 GATGCTTCTGAATATATGGTCTTTACT 57.282 33.333 0.00 0.00 0.00 2.24
2419 6406 9.455847 GTTTTTGATGCTTCTGAATATATGGTC 57.544 33.333 0.88 0.00 0.00 4.02
2451 6439 6.978338 AGAAAGCAATATGTATTGGCATCAG 58.022 36.000 13.08 0.00 42.46 2.90
2461 6449 6.208988 ACTGAGTCGAGAAAGCAATATGTA 57.791 37.500 0.00 0.00 0.00 2.29
2471 6459 3.970610 CGTCGTTTTACTGAGTCGAGAAA 59.029 43.478 0.00 0.00 0.00 2.52
2522 6510 7.379098 TGATACTACTACCTATCTTGCATCG 57.621 40.000 0.00 0.00 0.00 3.84
2525 6513 6.549736 TGCTTGATACTACTACCTATCTTGCA 59.450 38.462 0.00 0.00 31.90 4.08
2534 6522 8.198109 TCTTTTCATCTGCTTGATACTACTACC 58.802 37.037 0.00 0.00 33.36 3.18
2537 6525 7.615403 TGTCTTTTCATCTGCTTGATACTACT 58.385 34.615 0.00 0.00 33.36 2.57
2541 6529 6.593382 AGTCTGTCTTTTCATCTGCTTGATAC 59.407 38.462 0.00 0.00 33.36 2.24
2550 6538 5.440610 ACACCAAAGTCTGTCTTTTCATCT 58.559 37.500 0.00 0.00 42.95 2.90
2555 6543 6.827586 TTGTTACACCAAAGTCTGTCTTTT 57.172 33.333 0.00 0.00 42.95 2.27
2561 6549 8.188139 ACACTTAATTTGTTACACCAAAGTCTG 58.812 33.333 0.00 0.00 37.71 3.51
2563 6551 7.971722 ACACACTTAATTTGTTACACCAAAGTC 59.028 33.333 0.00 0.00 37.71 3.01
2681 7050 0.248539 CGTTCGTCGGAGGAGAATCC 60.249 60.000 0.31 0.00 46.16 3.01
2741 7120 3.116531 GTCTACACGGCGGCCAAC 61.117 66.667 20.71 3.06 0.00 3.77
2742 7121 4.382320 GGTCTACACGGCGGCCAA 62.382 66.667 20.71 0.00 0.00 4.52
2744 7123 4.382320 TTGGTCTACACGGCGGCC 62.382 66.667 13.24 9.54 0.00 6.13
2745 7124 3.116531 GTTGGTCTACACGGCGGC 61.117 66.667 13.24 0.00 0.00 6.53
2746 7125 2.433664 GGTTGGTCTACACGGCGG 60.434 66.667 13.24 2.35 0.00 6.13
2747 7126 1.736645 CTGGTTGGTCTACACGGCG 60.737 63.158 4.80 4.80 0.00 6.46
2748 7127 2.033194 GCTGGTTGGTCTACACGGC 61.033 63.158 0.00 0.00 0.00 5.68
2749 7128 1.375523 GGCTGGTTGGTCTACACGG 60.376 63.158 0.00 0.00 0.00 4.94
2750 7129 1.736645 CGGCTGGTTGGTCTACACG 60.737 63.158 0.00 0.00 0.00 4.49
2751 7130 1.375523 CCGGCTGGTTGGTCTACAC 60.376 63.158 2.29 0.00 0.00 2.90
2752 7131 3.065306 CCGGCTGGTTGGTCTACA 58.935 61.111 2.29 0.00 0.00 2.74
2766 7145 0.746063 TACGTTGTGCCCTATACCGG 59.254 55.000 0.00 0.00 0.00 5.28
2767 7146 1.269413 CCTACGTTGTGCCCTATACCG 60.269 57.143 0.00 0.00 0.00 4.02
2768 7147 1.758862 ACCTACGTTGTGCCCTATACC 59.241 52.381 0.00 0.00 0.00 2.73
2769 7148 2.428171 TCACCTACGTTGTGCCCTATAC 59.572 50.000 11.78 0.00 33.71 1.47
2770 7149 2.428171 GTCACCTACGTTGTGCCCTATA 59.572 50.000 11.78 0.00 33.71 1.31
2771 7150 1.206371 GTCACCTACGTTGTGCCCTAT 59.794 52.381 11.78 0.00 33.71 2.57
2772 7151 0.604578 GTCACCTACGTTGTGCCCTA 59.395 55.000 11.78 0.00 33.71 3.53
2773 7152 1.370064 GTCACCTACGTTGTGCCCT 59.630 57.895 11.78 0.00 33.71 5.19
2774 7153 1.670083 GGTCACCTACGTTGTGCCC 60.670 63.158 11.78 7.46 33.71 5.36
2775 7154 1.670083 GGGTCACCTACGTTGTGCC 60.670 63.158 11.78 14.26 33.71 5.01
2776 7155 3.961729 GGGTCACCTACGTTGTGC 58.038 61.111 11.78 7.90 33.71 4.57
2855 7234 2.125512 GTAGGAGCTGTGGCACGG 60.126 66.667 22.11 22.11 41.70 4.94
2921 7513 6.459670 TCCAGTAATATTGACAAGTCGCTA 57.540 37.500 0.00 0.00 0.00 4.26
2922 7514 5.339008 TCCAGTAATATTGACAAGTCGCT 57.661 39.130 0.00 0.00 0.00 4.93
2923 7515 4.508124 CCTCCAGTAATATTGACAAGTCGC 59.492 45.833 0.00 0.00 0.00 5.19
2924 7516 5.050490 CCCTCCAGTAATATTGACAAGTCG 58.950 45.833 0.00 0.00 0.00 4.18
2925 7517 5.368989 CCCCTCCAGTAATATTGACAAGTC 58.631 45.833 0.00 0.00 0.00 3.01
2926 7518 4.385310 GCCCCTCCAGTAATATTGACAAGT 60.385 45.833 0.00 0.00 0.00 3.16
2927 7519 4.137543 GCCCCTCCAGTAATATTGACAAG 58.862 47.826 0.00 0.00 0.00 3.16
2928 7520 3.525609 TGCCCCTCCAGTAATATTGACAA 59.474 43.478 0.00 0.00 0.00 3.18
2929 7521 3.119319 TGCCCCTCCAGTAATATTGACA 58.881 45.455 0.00 0.00 0.00 3.58
2930 7522 3.857157 TGCCCCTCCAGTAATATTGAC 57.143 47.619 0.00 0.00 0.00 3.18
2931 7523 4.386312 CCTTTGCCCCTCCAGTAATATTGA 60.386 45.833 0.00 0.00 0.00 2.57
2932 7524 3.891366 CCTTTGCCCCTCCAGTAATATTG 59.109 47.826 0.00 0.00 0.00 1.90
2933 7525 3.531814 ACCTTTGCCCCTCCAGTAATATT 59.468 43.478 0.00 0.00 0.00 1.28
2934 7526 3.117512 CACCTTTGCCCCTCCAGTAATAT 60.118 47.826 0.00 0.00 0.00 1.28
2941 7533 1.360393 AAGACACCTTTGCCCCTCCA 61.360 55.000 0.00 0.00 0.00 3.86
2943 7535 1.704641 AAAAGACACCTTTGCCCCTC 58.295 50.000 0.00 0.00 41.46 4.30
2955 7547 7.219154 CACTGTTAAATTGCACGTAAAAAGACA 59.781 33.333 0.00 0.00 0.00 3.41
2957 7549 7.251994 ACACTGTTAAATTGCACGTAAAAAGA 58.748 30.769 0.00 0.00 0.00 2.52
2963 7555 8.222433 GTGTATAACACTGTTAAATTGCACGTA 58.778 33.333 5.73 0.00 45.27 3.57
2980 7572 6.487331 ACTTCCGTCCATTTTTGTGTATAACA 59.513 34.615 0.00 0.00 36.85 2.41
2985 7577 4.200874 ACACTTCCGTCCATTTTTGTGTA 58.799 39.130 0.00 0.00 35.94 2.90
2995 7587 3.620472 GCCCTTTATAACACTTCCGTCCA 60.620 47.826 0.00 0.00 0.00 4.02
3056 7648 6.780031 TCATTTCCCTATTTGACACCAAGAAA 59.220 34.615 0.00 0.00 33.23 2.52
3062 7654 9.936759 TTAAATTTCATTTCCCTATTTGACACC 57.063 29.630 0.00 0.00 33.82 4.16
3112 7704 9.051679 CCGGTTGTGATGTCAAAATATATAGAA 57.948 33.333 0.00 0.00 0.00 2.10
3113 7705 8.425703 TCCGGTTGTGATGTCAAAATATATAGA 58.574 33.333 0.00 0.00 0.00 1.98
3114 7706 8.601845 TCCGGTTGTGATGTCAAAATATATAG 57.398 34.615 0.00 0.00 0.00 1.31
3115 7707 8.208224 ACTCCGGTTGTGATGTCAAAATATATA 58.792 33.333 0.00 0.00 0.00 0.86
3116 7708 7.054124 ACTCCGGTTGTGATGTCAAAATATAT 58.946 34.615 0.00 0.00 0.00 0.86
3117 7709 6.411376 ACTCCGGTTGTGATGTCAAAATATA 58.589 36.000 0.00 0.00 0.00 0.86
3118 7710 5.253330 ACTCCGGTTGTGATGTCAAAATAT 58.747 37.500 0.00 0.00 0.00 1.28
3119 7711 4.647611 ACTCCGGTTGTGATGTCAAAATA 58.352 39.130 0.00 0.00 0.00 1.40
3120 7712 3.486383 ACTCCGGTTGTGATGTCAAAAT 58.514 40.909 0.00 0.00 0.00 1.82
3133 7725 5.334319 CAAACTTTACGAAAAACTCCGGTT 58.666 37.500 0.00 0.00 37.24 4.44
3147 7739 3.811497 ACAAGGTACCTCGCAAACTTTAC 59.189 43.478 16.64 0.00 0.00 2.01
3184 7777 6.964807 TGCAAGGAAGCATCAACATATTAT 57.035 33.333 0.00 0.00 40.11 1.28
3213 7808 5.946377 ACCCTCATTGTCTATCAAAAGGTTC 59.054 40.000 0.00 0.00 39.42 3.62
3279 7874 0.314935 GGTTGCCATTGTGGTCACTG 59.685 55.000 2.66 0.00 40.46 3.66
3285 7880 2.198827 TAGTCAGGTTGCCATTGTGG 57.801 50.000 0.00 0.00 41.55 4.17
3318 7913 8.759782 GTTCTAGTGCCATACCTATACCATAAT 58.240 37.037 0.00 0.00 0.00 1.28
3338 7933 4.688021 GACTATGTGGGCAGAAGTTCTAG 58.312 47.826 4.74 0.00 0.00 2.43
3380 7975 1.537638 ACCAAACGACGCATGCATAAA 59.462 42.857 19.57 0.00 0.00 1.40
3391 7986 6.210796 AGTAAAATAAAAGGCACCAAACGAC 58.789 36.000 0.00 0.00 0.00 4.34
3399 7994 9.908152 AACAATGAGTAGTAAAATAAAAGGCAC 57.092 29.630 0.00 0.00 0.00 5.01
3437 8038 2.727123 TTCTGGAGGTCTGCACAAAA 57.273 45.000 0.00 0.00 0.00 2.44
3438 8039 2.886523 CAATTCTGGAGGTCTGCACAAA 59.113 45.455 0.00 0.00 0.00 2.83
3439 8040 2.507484 CAATTCTGGAGGTCTGCACAA 58.493 47.619 0.00 0.00 0.00 3.33
3440 8041 1.883638 GCAATTCTGGAGGTCTGCACA 60.884 52.381 0.00 0.00 0.00 4.57
3441 8042 0.807496 GCAATTCTGGAGGTCTGCAC 59.193 55.000 0.00 0.00 0.00 4.57
3465 8066 1.004277 GGACCATACCTTGTGCTTCCA 59.996 52.381 0.00 0.00 0.00 3.53
3522 8123 3.009723 TGGCTTTCCATTAAGAAGCTCG 58.990 45.455 7.18 0.00 43.91 5.03
3531 8132 2.387757 GGCAGGATTGGCTTTCCATTA 58.612 47.619 8.64 0.00 45.79 1.90
3610 8211 7.416664 GGGCTTAAATCACATCAAATGCTTAGA 60.417 37.037 0.00 0.00 0.00 2.10
3649 8250 6.401047 ACAAACGGCTATAGCTATAACTCA 57.599 37.500 23.53 0.00 41.70 3.41
3916 8518 1.657181 GCCGGTCAAAACTGCAACG 60.657 57.895 1.90 0.00 0.00 4.10
3978 8581 7.901029 TGCCAAATTTGTCATTTTATACCTGA 58.099 30.769 16.73 0.00 0.00 3.86
3999 8602 1.702182 TCTGATTGCCAAACTTGCCA 58.298 45.000 0.00 0.00 0.00 4.92
4000 8603 2.613691 CATCTGATTGCCAAACTTGCC 58.386 47.619 0.00 0.00 0.00 4.52
4001 8604 1.997606 GCATCTGATTGCCAAACTTGC 59.002 47.619 0.00 0.00 36.60 4.01
4002 8605 3.587797 AGCATCTGATTGCCAAACTTG 57.412 42.857 7.97 0.00 43.83 3.16
4003 8606 5.927281 ATAAGCATCTGATTGCCAAACTT 57.073 34.783 7.97 0.00 43.83 2.66
4004 8607 5.927281 AATAAGCATCTGATTGCCAAACT 57.073 34.783 7.97 0.00 43.83 2.66
4005 8608 5.521372 GGAAATAAGCATCTGATTGCCAAAC 59.479 40.000 7.97 0.00 43.83 2.93
4006 8609 5.422970 AGGAAATAAGCATCTGATTGCCAAA 59.577 36.000 4.18 0.00 43.83 3.28
4007 8610 4.957954 AGGAAATAAGCATCTGATTGCCAA 59.042 37.500 4.18 0.00 43.83 4.52
4008 8611 4.539726 AGGAAATAAGCATCTGATTGCCA 58.460 39.130 4.18 0.00 43.83 4.92
4009 8612 5.526506 AAGGAAATAAGCATCTGATTGCC 57.473 39.130 7.97 0.00 43.83 4.52
4010 8613 7.263496 AGAAAAGGAAATAAGCATCTGATTGC 58.737 34.615 4.56 4.56 43.09 3.56
4011 8614 9.649167 AAAGAAAAGGAAATAAGCATCTGATTG 57.351 29.630 0.00 0.00 0.00 2.67
4012 8615 9.866798 GAAAGAAAAGGAAATAAGCATCTGATT 57.133 29.630 0.00 0.00 0.00 2.57
4013 8616 9.252635 AGAAAGAAAAGGAAATAAGCATCTGAT 57.747 29.630 0.00 0.00 0.00 2.90
4014 8617 8.641498 AGAAAGAAAAGGAAATAAGCATCTGA 57.359 30.769 0.00 0.00 0.00 3.27
4015 8618 9.702494 AAAGAAAGAAAAGGAAATAAGCATCTG 57.298 29.630 0.00 0.00 0.00 2.90
4016 8619 9.702494 CAAAGAAAGAAAAGGAAATAAGCATCT 57.298 29.630 0.00 0.00 0.00 2.90
4017 8620 8.929746 CCAAAGAAAGAAAAGGAAATAAGCATC 58.070 33.333 0.00 0.00 0.00 3.91
4018 8621 7.879677 CCCAAAGAAAGAAAAGGAAATAAGCAT 59.120 33.333 0.00 0.00 0.00 3.79
4019 8622 7.216494 CCCAAAGAAAGAAAAGGAAATAAGCA 58.784 34.615 0.00 0.00 0.00 3.91
4020 8623 6.147821 GCCCAAAGAAAGAAAAGGAAATAAGC 59.852 38.462 0.00 0.00 0.00 3.09
4021 8624 6.650807 GGCCCAAAGAAAGAAAAGGAAATAAG 59.349 38.462 0.00 0.00 0.00 1.73
4022 8625 6.328934 AGGCCCAAAGAAAGAAAAGGAAATAA 59.671 34.615 0.00 0.00 0.00 1.40
4023 8626 5.843969 AGGCCCAAAGAAAGAAAAGGAAATA 59.156 36.000 0.00 0.00 0.00 1.40
4024 8627 4.660303 AGGCCCAAAGAAAGAAAAGGAAAT 59.340 37.500 0.00 0.00 0.00 2.17
4025 8628 4.037222 AGGCCCAAAGAAAGAAAAGGAAA 58.963 39.130 0.00 0.00 0.00 3.13
4026 8629 3.387699 CAGGCCCAAAGAAAGAAAAGGAA 59.612 43.478 0.00 0.00 0.00 3.36
4027 8630 2.965147 CAGGCCCAAAGAAAGAAAAGGA 59.035 45.455 0.00 0.00 0.00 3.36
4028 8631 2.700371 ACAGGCCCAAAGAAAGAAAAGG 59.300 45.455 0.00 0.00 0.00 3.11
4029 8632 3.132824 ACACAGGCCCAAAGAAAGAAAAG 59.867 43.478 0.00 0.00 0.00 2.27
4030 8633 3.103742 ACACAGGCCCAAAGAAAGAAAA 58.896 40.909 0.00 0.00 0.00 2.29
4031 8634 2.745968 ACACAGGCCCAAAGAAAGAAA 58.254 42.857 0.00 0.00 0.00 2.52
4032 8635 2.452600 ACACAGGCCCAAAGAAAGAA 57.547 45.000 0.00 0.00 0.00 2.52
4033 8636 3.073798 TCATACACAGGCCCAAAGAAAGA 59.926 43.478 0.00 0.00 0.00 2.52
4034 8637 3.420893 TCATACACAGGCCCAAAGAAAG 58.579 45.455 0.00 0.00 0.00 2.62
4035 8638 3.517296 TCATACACAGGCCCAAAGAAA 57.483 42.857 0.00 0.00 0.00 2.52
4036 8639 3.737559 ATCATACACAGGCCCAAAGAA 57.262 42.857 0.00 0.00 0.00 2.52
4037 8640 4.853468 TTATCATACACAGGCCCAAAGA 57.147 40.909 0.00 0.00 0.00 2.52
4038 8641 5.418840 ACTTTTATCATACACAGGCCCAAAG 59.581 40.000 0.00 0.00 0.00 2.77
4039 8642 5.329399 ACTTTTATCATACACAGGCCCAAA 58.671 37.500 0.00 0.00 0.00 3.28
4040 8643 4.929479 ACTTTTATCATACACAGGCCCAA 58.071 39.130 0.00 0.00 0.00 4.12
4041 8644 4.584638 ACTTTTATCATACACAGGCCCA 57.415 40.909 0.00 0.00 0.00 5.36
4042 8645 5.914898 AAACTTTTATCATACACAGGCCC 57.085 39.130 0.00 0.00 0.00 5.80
4058 8661 9.786105 CAAAACTTGCCAAATTTGATAAACTTT 57.214 25.926 19.86 11.54 35.34 2.66
4104 8707 4.817318 ACACAGGCCAAAAGAAAGAAAA 57.183 36.364 5.01 0.00 0.00 2.29
4108 8711 5.649782 ATCATACACAGGCCAAAAGAAAG 57.350 39.130 5.01 0.00 0.00 2.62
4109 8712 7.531857 TTTATCATACACAGGCCAAAAGAAA 57.468 32.000 5.01 0.00 0.00 2.52
4112 8715 6.924111 ACTTTTATCATACACAGGCCAAAAG 58.076 36.000 5.01 10.56 37.61 2.27
4113 8716 6.909550 ACTTTTATCATACACAGGCCAAAA 57.090 33.333 5.01 0.00 0.00 2.44
4183 8790 2.489255 CCTCCTTCGCTGGTATCCTCTA 60.489 54.545 0.00 0.00 0.00 2.43
4248 8855 3.256383 TGATCAGAACGTACCTTTTCGGA 59.744 43.478 0.00 0.00 36.31 4.55
4267 8874 9.243105 ACTTGGCAGTATAATAAAAACAGTGAT 57.757 29.630 0.00 0.00 0.00 3.06
4315 8922 5.634020 ACATAACTTAGCTCACGAAGTTCAC 59.366 40.000 14.15 0.00 45.19 3.18
4316 8923 5.779922 ACATAACTTAGCTCACGAAGTTCA 58.220 37.500 14.15 4.34 45.19 3.18
4317 8924 5.862323 TGACATAACTTAGCTCACGAAGTTC 59.138 40.000 14.15 3.39 45.19 3.01
4320 8927 6.020281 GTCATGACATAACTTAGCTCACGAAG 60.020 42.308 21.07 0.00 34.92 3.79
4321 8928 5.805486 GTCATGACATAACTTAGCTCACGAA 59.195 40.000 21.07 0.00 0.00 3.85
4322 8929 5.340803 GTCATGACATAACTTAGCTCACGA 58.659 41.667 21.07 0.00 0.00 4.35
4323 8930 4.504461 GGTCATGACATAACTTAGCTCACG 59.496 45.833 26.47 0.00 0.00 4.35
4356 8963 3.261580 TGACGGCAAACTGTATCATCAG 58.738 45.455 0.00 0.00 40.80 2.90
4357 8964 3.326836 TGACGGCAAACTGTATCATCA 57.673 42.857 0.00 0.00 34.75 3.07
4374 8981 5.663795 ATTCGTGTGATGCTTCATATGAC 57.336 39.130 17.31 7.14 38.33 3.06
4377 8984 5.125356 TGGAATTCGTGTGATGCTTCATAT 58.875 37.500 5.49 0.00 33.56 1.78
4434 9041 2.331132 GCGCTTTGCAGCTTCCTCT 61.331 57.895 0.00 0.00 44.85 3.69
4515 9122 2.124403 CCAGGCCTGATCTGGTGC 60.124 66.667 34.91 6.42 44.97 5.01
4572 9179 0.977395 CTCCAGGTCCTCGAGGTTTT 59.023 55.000 30.17 14.13 36.34 2.43
4611 9218 2.597510 GCGCCTTGGTTTCCACCT 60.598 61.111 0.00 0.00 44.61 4.00
4617 9224 0.254747 TATAGCCTGCGCCTTGGTTT 59.745 50.000 4.18 0.63 34.57 3.27
4741 9348 0.182061 CCATATCCACTGCCAGCACT 59.818 55.000 0.00 0.00 0.00 4.40
4818 9425 0.822532 GATAGTTCGGGCCTCCTCGA 60.823 60.000 0.84 0.00 0.00 4.04
4906 9513 2.224159 AACTGGAGGGGCGTGTCAT 61.224 57.895 0.00 0.00 0.00 3.06
4910 9517 3.636231 TCCAACTGGAGGGGCGTG 61.636 66.667 0.00 0.00 39.78 5.34
4966 9573 2.594321 TGCGCAACAATCACATAAAGC 58.406 42.857 8.16 0.00 0.00 3.51
5069 9676 8.134895 ACAAATTGAATCATAAACGACACACTT 58.865 29.630 0.00 0.00 0.00 3.16
5137 9745 7.278875 TGGTCATACATTCATAACATACAGCA 58.721 34.615 0.00 0.00 0.00 4.41
5183 9791 7.615790 CAAACTTTTCTTTTCAGACTTGCATC 58.384 34.615 0.00 0.00 0.00 3.91
5216 9824 7.120138 AGCAAGAGTACTAACAGAGAAGAGTAC 59.880 40.741 0.00 3.40 42.97 2.73
5262 9870 8.986929 AGCTCCAAAGAAGCAAGTATTTATAT 57.013 30.769 0.00 0.00 0.00 0.86
5264 9872 7.709149 AAGCTCCAAAGAAGCAAGTATTTAT 57.291 32.000 0.00 0.00 0.00 1.40
5265 9873 8.630054 TTAAGCTCCAAAGAAGCAAGTATTTA 57.370 30.769 0.00 0.00 0.00 1.40
5266 9874 7.524717 TTAAGCTCCAAAGAAGCAAGTATTT 57.475 32.000 0.00 0.00 0.00 1.40
5267 9875 7.394359 TGATTAAGCTCCAAAGAAGCAAGTATT 59.606 33.333 0.00 0.00 0.00 1.89
5268 9876 6.886459 TGATTAAGCTCCAAAGAAGCAAGTAT 59.114 34.615 0.00 0.00 0.00 2.12
5269 9877 6.149474 GTGATTAAGCTCCAAAGAAGCAAGTA 59.851 38.462 0.00 0.00 0.00 2.24
5270 9878 5.048434 GTGATTAAGCTCCAAAGAAGCAAGT 60.048 40.000 0.00 0.00 0.00 3.16
5271 9879 5.048504 TGTGATTAAGCTCCAAAGAAGCAAG 60.049 40.000 0.00 0.00 0.00 4.01
5272 9880 4.826733 TGTGATTAAGCTCCAAAGAAGCAA 59.173 37.500 0.00 0.00 0.00 3.91
5273 9881 4.397420 TGTGATTAAGCTCCAAAGAAGCA 58.603 39.130 0.00 0.00 0.00 3.91
5274 9882 5.182001 TCTTGTGATTAAGCTCCAAAGAAGC 59.818 40.000 0.00 0.00 0.00 3.86
5275 9883 6.808008 TCTTGTGATTAAGCTCCAAAGAAG 57.192 37.500 0.00 0.00 0.00 2.85
5276 9884 7.448161 TGATTCTTGTGATTAAGCTCCAAAGAA 59.552 33.333 9.37 9.37 0.00 2.52
5277 9885 6.942005 TGATTCTTGTGATTAAGCTCCAAAGA 59.058 34.615 0.00 0.00 0.00 2.52
5278 9886 7.149569 TGATTCTTGTGATTAAGCTCCAAAG 57.850 36.000 0.00 0.00 0.00 2.77
5279 9887 7.707624 ATGATTCTTGTGATTAAGCTCCAAA 57.292 32.000 0.00 0.00 0.00 3.28
5280 9888 8.985315 ATATGATTCTTGTGATTAAGCTCCAA 57.015 30.769 0.00 0.00 0.00 3.53
5309 9917 4.690748 TCGTTGATCCTAAGAAGCAAAGTG 59.309 41.667 0.00 0.00 0.00 3.16
5314 9922 3.953712 TGTCGTTGATCCTAAGAAGCA 57.046 42.857 0.00 0.00 0.00 3.91
5315 9923 4.929808 TCTTTGTCGTTGATCCTAAGAAGC 59.070 41.667 0.00 0.00 0.00 3.86
5316 9924 5.926542 TGTCTTTGTCGTTGATCCTAAGAAG 59.073 40.000 0.00 0.00 0.00 2.85
5318 9926 5.462530 TGTCTTTGTCGTTGATCCTAAGA 57.537 39.130 0.00 0.00 0.00 2.10
5319 9927 5.696724 ACTTGTCTTTGTCGTTGATCCTAAG 59.303 40.000 0.00 0.00 0.00 2.18
5335 9999 1.006102 CGTCCGCCTCACTTGTCTT 60.006 57.895 0.00 0.00 0.00 3.01
5535 10362 4.099419 GGAATTCCAGTCAAGTTTGTTGGT 59.901 41.667 20.04 1.44 36.29 3.67
5772 10600 9.035607 CGGCTATGTTTCTATTGGATATGATAC 57.964 37.037 0.00 0.00 0.00 2.24
5797 10626 6.531594 TCTGCTGTTACTTACTTGATTCATCG 59.468 38.462 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.