Multiple sequence alignment - TraesCS3A01G497800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G497800 chr3A 100.000 2297 0 0 1 2297 723838091 723840387 0.000000e+00 4242.0
1 TraesCS3A01G497800 chr3A 95.455 374 16 1 1 374 568955756 568956128 1.520000e-166 595.0
2 TraesCS3A01G497800 chr3A 94.385 374 20 1 1 374 46331067 46330695 7.120000e-160 573.0
3 TraesCS3A01G497800 chr3A 94.385 374 20 1 1 374 364313734 364314106 7.120000e-160 573.0
4 TraesCS3A01G497800 chr3A 89.855 276 13 4 696 971 746942742 746943002 7.860000e-90 340.0
5 TraesCS3A01G497800 chr1A 92.654 1933 108 16 374 2297 47378733 47376826 0.000000e+00 2752.0
6 TraesCS3A01G497800 chr1A 96.703 1577 50 1 374 1950 17306508 17304934 0.000000e+00 2623.0
7 TraesCS3A01G497800 chr1A 94.118 374 21 1 1 374 468921785 468922157 3.310000e-158 568.0
8 TraesCS3A01G497800 chr7A 91.257 1933 114 14 374 2297 415463728 415461842 0.000000e+00 2582.0
9 TraesCS3A01G497800 chr7A 91.213 1138 85 6 374 1502 415923126 415921995 0.000000e+00 1533.0
10 TraesCS3A01G497800 chr7A 94.652 374 19 1 1 374 684047226 684046854 1.530000e-161 579.0
11 TraesCS3A01G497800 chr7A 94.074 135 8 0 2163 2297 415922003 415921869 2.990000e-49 206.0
12 TraesCS3A01G497800 chr6A 93.084 1576 80 9 730 2297 589252444 589250890 0.000000e+00 2279.0
13 TraesCS3A01G497800 chr6A 94.118 374 21 1 1 374 100464073 100463701 3.310000e-158 568.0
14 TraesCS3A01G497800 chr6B 85.435 563 69 11 1547 2105 643521460 643520907 7.120000e-160 573.0
15 TraesCS3A01G497800 chr6B 90.625 64 3 3 788 850 643529569 643529508 5.260000e-12 82.4
16 TraesCS3A01G497800 chr5A 94.385 374 20 1 1 374 571140336 571139964 7.120000e-160 573.0
17 TraesCS3A01G497800 chr2A 94.385 374 20 1 1 374 324644395 324644767 7.120000e-160 573.0
18 TraesCS3A01G497800 chr2A 94.133 375 20 2 1 374 305372837 305373210 9.210000e-159 569.0
19 TraesCS3A01G497800 chr2A 87.379 412 41 9 1712 2118 541819055 541818650 1.610000e-126 462.0
20 TraesCS3A01G497800 chr2A 83.793 290 37 6 1239 1525 541819817 541819535 1.350000e-67 267.0
21 TraesCS3A01G497800 chr4B 87.041 517 54 6 374 883 41007215 41007725 2.560000e-159 571.0
22 TraesCS3A01G497800 chr3B 85.682 440 56 7 1712 2150 703832099 703831666 7.480000e-125 457.0
23 TraesCS3A01G497800 chr3B 85.455 440 57 7 1712 2150 73184009 73183576 3.480000e-123 451.0
24 TraesCS3A01G497800 chr5D 81.423 253 35 10 1295 1540 426053917 426053670 1.800000e-46 196.0
25 TraesCS3A01G497800 chr4A 83.486 109 14 4 376 481 284692551 284692444 5.220000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G497800 chr3A 723838091 723840387 2296 False 4242.0 4242 100.0000 1 2297 1 chr3A.!!$F3 2296
1 TraesCS3A01G497800 chr1A 47376826 47378733 1907 True 2752.0 2752 92.6540 374 2297 1 chr1A.!!$R2 1923
2 TraesCS3A01G497800 chr1A 17304934 17306508 1574 True 2623.0 2623 96.7030 374 1950 1 chr1A.!!$R1 1576
3 TraesCS3A01G497800 chr7A 415461842 415463728 1886 True 2582.0 2582 91.2570 374 2297 1 chr7A.!!$R1 1923
4 TraesCS3A01G497800 chr7A 415921869 415923126 1257 True 869.5 1533 92.6435 374 2297 2 chr7A.!!$R3 1923
5 TraesCS3A01G497800 chr6A 589250890 589252444 1554 True 2279.0 2279 93.0840 730 2297 1 chr6A.!!$R2 1567
6 TraesCS3A01G497800 chr6B 643520907 643521460 553 True 573.0 573 85.4350 1547 2105 1 chr6B.!!$R1 558
7 TraesCS3A01G497800 chr2A 541818650 541819817 1167 True 364.5 462 85.5860 1239 2118 2 chr2A.!!$R1 879
8 TraesCS3A01G497800 chr4B 41007215 41007725 510 False 571.0 571 87.0410 374 883 1 chr4B.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.036875 GCTGCTTAGGTGACCCTGTT 59.963 55.0 0.0 0.0 42.67 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2076 8.950208 AAGAAGAATAGAACTGGCATAACTAC 57.05 34.615 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.236527 GGGAGATTGTTCCTTGGTATGT 57.763 45.455 0.00 0.00 37.40 2.29
22 23 3.947834 GGGAGATTGTTCCTTGGTATGTG 59.052 47.826 0.00 0.00 37.40 3.21
23 24 4.324254 GGGAGATTGTTCCTTGGTATGTGA 60.324 45.833 0.00 0.00 37.40 3.58
24 25 4.636206 GGAGATTGTTCCTTGGTATGTGAC 59.364 45.833 0.00 0.00 34.27 3.67
25 26 5.491982 GAGATTGTTCCTTGGTATGTGACT 58.508 41.667 0.00 0.00 0.00 3.41
26 27 5.491982 AGATTGTTCCTTGGTATGTGACTC 58.508 41.667 0.00 0.00 0.00 3.36
27 28 3.695830 TGTTCCTTGGTATGTGACTCC 57.304 47.619 0.00 0.00 0.00 3.85
28 29 3.248024 TGTTCCTTGGTATGTGACTCCT 58.752 45.455 0.00 0.00 0.00 3.69
29 30 3.260884 TGTTCCTTGGTATGTGACTCCTC 59.739 47.826 0.00 0.00 0.00 3.71
30 31 3.474798 TCCTTGGTATGTGACTCCTCT 57.525 47.619 0.00 0.00 0.00 3.69
31 32 4.603094 TCCTTGGTATGTGACTCCTCTA 57.397 45.455 0.00 0.00 0.00 2.43
32 33 5.144159 TCCTTGGTATGTGACTCCTCTAT 57.856 43.478 0.00 0.00 0.00 1.98
33 34 5.529289 TCCTTGGTATGTGACTCCTCTATT 58.471 41.667 0.00 0.00 0.00 1.73
34 35 5.363868 TCCTTGGTATGTGACTCCTCTATTG 59.636 44.000 0.00 0.00 0.00 1.90
35 36 5.453903 CCTTGGTATGTGACTCCTCTATTGG 60.454 48.000 0.00 0.00 0.00 3.16
36 37 4.620723 TGGTATGTGACTCCTCTATTGGT 58.379 43.478 0.00 0.00 0.00 3.67
37 38 4.649674 TGGTATGTGACTCCTCTATTGGTC 59.350 45.833 0.00 0.00 0.00 4.02
38 39 4.039366 GGTATGTGACTCCTCTATTGGTCC 59.961 50.000 0.00 0.00 0.00 4.46
39 40 3.184382 TGTGACTCCTCTATTGGTCCA 57.816 47.619 0.00 0.00 0.00 4.02
40 41 3.516586 TGTGACTCCTCTATTGGTCCAA 58.483 45.455 6.80 6.80 0.00 3.53
41 42 4.104086 TGTGACTCCTCTATTGGTCCAAT 58.896 43.478 20.82 20.82 37.80 3.16
42 43 4.536090 TGTGACTCCTCTATTGGTCCAATT 59.464 41.667 22.13 2.32 35.54 2.32
43 44 5.724370 TGTGACTCCTCTATTGGTCCAATTA 59.276 40.000 22.13 10.25 35.54 1.40
44 45 6.127054 TGTGACTCCTCTATTGGTCCAATTAG 60.127 42.308 22.13 18.00 35.54 1.73
45 46 5.964477 TGACTCCTCTATTGGTCCAATTAGT 59.036 40.000 22.13 16.15 35.54 2.24
46 47 6.443849 TGACTCCTCTATTGGTCCAATTAGTT 59.556 38.462 22.13 0.95 35.54 2.24
47 48 7.037586 TGACTCCTCTATTGGTCCAATTAGTTT 60.038 37.037 22.13 0.18 35.54 2.66
48 49 7.699878 ACTCCTCTATTGGTCCAATTAGTTTT 58.300 34.615 22.13 0.00 35.54 2.43
49 50 8.170730 ACTCCTCTATTGGTCCAATTAGTTTTT 58.829 33.333 22.13 0.00 35.54 1.94
50 51 8.348285 TCCTCTATTGGTCCAATTAGTTTTTG 57.652 34.615 22.13 7.64 35.54 2.44
51 52 7.947890 TCCTCTATTGGTCCAATTAGTTTTTGT 59.052 33.333 22.13 0.00 35.54 2.83
52 53 8.585018 CCTCTATTGGTCCAATTAGTTTTTGTT 58.415 33.333 22.13 0.00 35.54 2.83
53 54 9.626045 CTCTATTGGTCCAATTAGTTTTTGTTC 57.374 33.333 22.13 0.00 35.54 3.18
54 55 9.362151 TCTATTGGTCCAATTAGTTTTTGTTCT 57.638 29.630 22.13 0.00 35.54 3.01
57 58 8.528044 TTGGTCCAATTAGTTTTTGTTCTAGT 57.472 30.769 0.00 0.00 0.00 2.57
58 59 7.936584 TGGTCCAATTAGTTTTTGTTCTAGTG 58.063 34.615 0.00 0.00 0.00 2.74
59 60 7.776030 TGGTCCAATTAGTTTTTGTTCTAGTGA 59.224 33.333 0.00 0.00 0.00 3.41
60 61 8.793592 GGTCCAATTAGTTTTTGTTCTAGTGAT 58.206 33.333 0.00 0.00 0.00 3.06
81 82 8.231837 AGTGATTTATTCATTGCAAATTTGTGC 58.768 29.630 19.03 7.59 39.80 4.57
82 83 8.231837 GTGATTTATTCATTGCAAATTTGTGCT 58.768 29.630 19.03 1.83 39.94 4.40
83 84 8.231161 TGATTTATTCATTGCAAATTTGTGCTG 58.769 29.630 19.03 13.10 45.17 4.41
84 85 3.881780 TTCATTGCAAATTTGTGCTGC 57.118 38.095 19.03 6.09 45.17 5.25
85 86 3.114668 TCATTGCAAATTTGTGCTGCT 57.885 38.095 19.03 0.00 45.17 4.24
86 87 3.468770 TCATTGCAAATTTGTGCTGCTT 58.531 36.364 19.03 0.00 45.17 3.91
87 88 4.629092 TCATTGCAAATTTGTGCTGCTTA 58.371 34.783 19.03 0.00 45.17 3.09
88 89 4.687018 TCATTGCAAATTTGTGCTGCTTAG 59.313 37.500 19.03 0.61 45.17 2.18
89 90 3.029320 TGCAAATTTGTGCTGCTTAGG 57.971 42.857 19.03 0.00 45.17 2.69
90 91 2.364970 TGCAAATTTGTGCTGCTTAGGT 59.635 40.909 19.03 0.00 45.17 3.08
91 92 2.733026 GCAAATTTGTGCTGCTTAGGTG 59.267 45.455 19.03 0.00 41.51 4.00
92 93 3.552684 GCAAATTTGTGCTGCTTAGGTGA 60.553 43.478 19.03 0.00 41.51 4.02
93 94 3.923017 AATTTGTGCTGCTTAGGTGAC 57.077 42.857 0.00 0.00 0.00 3.67
94 95 1.604604 TTTGTGCTGCTTAGGTGACC 58.395 50.000 0.00 0.00 0.00 4.02
95 96 0.250727 TTGTGCTGCTTAGGTGACCC 60.251 55.000 0.00 0.00 0.00 4.46
96 97 1.127567 TGTGCTGCTTAGGTGACCCT 61.128 55.000 0.00 0.00 45.51 4.34
97 98 0.674895 GTGCTGCTTAGGTGACCCTG 60.675 60.000 0.00 0.00 42.67 4.45
98 99 1.127567 TGCTGCTTAGGTGACCCTGT 61.128 55.000 0.00 0.00 42.67 4.00
99 100 0.036875 GCTGCTTAGGTGACCCTGTT 59.963 55.000 0.00 0.00 42.67 3.16
100 101 1.946283 GCTGCTTAGGTGACCCTGTTC 60.946 57.143 0.00 0.00 42.67 3.18
101 102 1.625818 CTGCTTAGGTGACCCTGTTCT 59.374 52.381 0.00 0.00 42.67 3.01
102 103 2.039084 CTGCTTAGGTGACCCTGTTCTT 59.961 50.000 0.00 0.00 42.67 2.52
103 104 2.224523 TGCTTAGGTGACCCTGTTCTTG 60.225 50.000 0.00 0.00 42.67 3.02
104 105 2.038557 GCTTAGGTGACCCTGTTCTTGA 59.961 50.000 0.00 0.00 42.67 3.02
105 106 3.866449 GCTTAGGTGACCCTGTTCTTGAG 60.866 52.174 0.00 0.00 42.67 3.02
106 107 0.398318 AGGTGACCCTGTTCTTGAGC 59.602 55.000 0.00 0.00 40.58 4.26
107 108 0.398318 GGTGACCCTGTTCTTGAGCT 59.602 55.000 0.00 0.00 0.00 4.09
108 109 1.202818 GGTGACCCTGTTCTTGAGCTT 60.203 52.381 0.00 0.00 0.00 3.74
109 110 1.876156 GTGACCCTGTTCTTGAGCTTG 59.124 52.381 0.00 0.00 0.00 4.01
110 111 0.877743 GACCCTGTTCTTGAGCTTGC 59.122 55.000 0.00 0.00 0.00 4.01
111 112 0.183492 ACCCTGTTCTTGAGCTTGCA 59.817 50.000 0.00 0.00 0.00 4.08
112 113 1.202976 ACCCTGTTCTTGAGCTTGCAT 60.203 47.619 0.00 0.00 0.00 3.96
113 114 1.201647 CCCTGTTCTTGAGCTTGCATG 59.798 52.381 0.00 0.00 0.00 4.06
114 115 1.884579 CCTGTTCTTGAGCTTGCATGT 59.115 47.619 1.14 0.00 0.00 3.21
115 116 2.095364 CCTGTTCTTGAGCTTGCATGTC 60.095 50.000 1.14 0.00 0.00 3.06
116 117 2.551032 CTGTTCTTGAGCTTGCATGTCA 59.449 45.455 1.14 1.82 0.00 3.58
117 118 2.950975 TGTTCTTGAGCTTGCATGTCAA 59.049 40.909 13.15 13.15 0.00 3.18
118 119 3.380954 TGTTCTTGAGCTTGCATGTCAAA 59.619 39.130 14.10 7.05 33.65 2.69
119 120 4.038282 TGTTCTTGAGCTTGCATGTCAAAT 59.962 37.500 14.10 0.00 33.65 2.32
120 121 4.859304 TCTTGAGCTTGCATGTCAAATT 57.141 36.364 14.10 0.00 33.65 1.82
121 122 5.204409 TCTTGAGCTTGCATGTCAAATTT 57.796 34.783 14.10 0.00 33.65 1.82
122 123 6.330004 TCTTGAGCTTGCATGTCAAATTTA 57.670 33.333 14.10 3.89 33.65 1.40
123 124 6.927416 TCTTGAGCTTGCATGTCAAATTTAT 58.073 32.000 14.10 0.00 33.65 1.40
124 125 8.054152 TCTTGAGCTTGCATGTCAAATTTATA 57.946 30.769 14.10 0.00 33.65 0.98
125 126 8.689061 TCTTGAGCTTGCATGTCAAATTTATAT 58.311 29.630 14.10 0.00 33.65 0.86
126 127 9.309516 CTTGAGCTTGCATGTCAAATTTATATT 57.690 29.630 14.10 0.00 33.65 1.28
157 158 9.442047 AAAGTAGTTCTAATGCATGATATAGGC 57.558 33.333 0.00 0.00 36.42 3.93
158 159 8.372877 AGTAGTTCTAATGCATGATATAGGCT 57.627 34.615 0.00 3.65 36.92 4.58
159 160 8.256605 AGTAGTTCTAATGCATGATATAGGCTG 58.743 37.037 0.00 0.00 36.92 4.85
160 161 7.013823 AGTTCTAATGCATGATATAGGCTGT 57.986 36.000 0.00 0.00 36.92 4.40
161 162 8.138928 AGTTCTAATGCATGATATAGGCTGTA 57.861 34.615 0.00 0.00 36.92 2.74
162 163 8.256605 AGTTCTAATGCATGATATAGGCTGTAG 58.743 37.037 0.00 0.00 36.92 2.74
163 164 7.117285 TCTAATGCATGATATAGGCTGTAGG 57.883 40.000 0.00 0.00 36.92 3.18
164 165 6.897413 TCTAATGCATGATATAGGCTGTAGGA 59.103 38.462 0.00 0.00 36.92 2.94
165 166 6.378661 AATGCATGATATAGGCTGTAGGAA 57.621 37.500 0.00 0.00 36.92 3.36
166 167 5.152623 TGCATGATATAGGCTGTAGGAAC 57.847 43.478 0.00 0.00 36.92 3.62
167 168 4.840680 TGCATGATATAGGCTGTAGGAACT 59.159 41.667 0.00 0.00 38.87 3.01
168 169 5.307976 TGCATGATATAGGCTGTAGGAACTT 59.692 40.000 0.00 0.00 37.06 2.66
169 170 5.641209 GCATGATATAGGCTGTAGGAACTTG 59.359 44.000 0.00 0.00 34.32 3.16
170 171 6.742644 GCATGATATAGGCTGTAGGAACTTGT 60.743 42.308 0.00 0.00 34.32 3.16
171 172 7.525526 GCATGATATAGGCTGTAGGAACTTGTA 60.526 40.741 0.00 0.00 34.32 2.41
172 173 7.526142 TGATATAGGCTGTAGGAACTTGTAG 57.474 40.000 0.00 0.00 41.75 2.74
173 174 6.493802 TGATATAGGCTGTAGGAACTTGTAGG 59.506 42.308 0.00 0.00 41.75 3.18
174 175 3.185880 AGGCTGTAGGAACTTGTAGGA 57.814 47.619 0.00 0.00 41.75 2.94
175 176 3.100671 AGGCTGTAGGAACTTGTAGGAG 58.899 50.000 0.00 0.00 41.75 3.69
176 177 2.832733 GGCTGTAGGAACTTGTAGGAGT 59.167 50.000 0.00 0.00 41.75 3.85
177 178 3.261137 GGCTGTAGGAACTTGTAGGAGTT 59.739 47.826 0.00 0.00 42.31 3.01
178 179 4.262938 GGCTGTAGGAACTTGTAGGAGTTT 60.263 45.833 0.00 0.00 39.84 2.66
179 180 5.306394 GCTGTAGGAACTTGTAGGAGTTTT 58.694 41.667 0.00 0.00 39.84 2.43
180 181 5.763698 GCTGTAGGAACTTGTAGGAGTTTTT 59.236 40.000 0.00 0.00 39.84 1.94
181 182 6.293462 GCTGTAGGAACTTGTAGGAGTTTTTG 60.293 42.308 0.00 0.00 39.84 2.44
182 183 5.529800 TGTAGGAACTTGTAGGAGTTTTTGC 59.470 40.000 0.00 0.00 39.84 3.68
183 184 4.793201 AGGAACTTGTAGGAGTTTTTGCT 58.207 39.130 0.00 0.00 39.84 3.91
184 185 5.937111 AGGAACTTGTAGGAGTTTTTGCTA 58.063 37.500 0.00 0.00 39.84 3.49
185 186 6.543735 AGGAACTTGTAGGAGTTTTTGCTAT 58.456 36.000 0.00 0.00 39.84 2.97
186 187 6.655425 AGGAACTTGTAGGAGTTTTTGCTATC 59.345 38.462 0.00 0.00 39.84 2.08
187 188 6.430000 GGAACTTGTAGGAGTTTTTGCTATCA 59.570 38.462 0.00 0.00 39.84 2.15
188 189 7.040686 GGAACTTGTAGGAGTTTTTGCTATCAA 60.041 37.037 0.00 0.00 39.84 2.57
189 190 8.409358 AACTTGTAGGAGTTTTTGCTATCAAT 57.591 30.769 0.00 0.00 36.49 2.57
190 191 8.409358 ACTTGTAGGAGTTTTTGCTATCAATT 57.591 30.769 0.00 0.00 31.94 2.32
191 192 8.860088 ACTTGTAGGAGTTTTTGCTATCAATTT 58.140 29.630 0.00 0.00 31.94 1.82
192 193 9.696917 CTTGTAGGAGTTTTTGCTATCAATTTT 57.303 29.630 0.00 0.00 31.94 1.82
193 194 9.474920 TTGTAGGAGTTTTTGCTATCAATTTTG 57.525 29.630 0.00 0.00 31.94 2.44
194 195 8.637986 TGTAGGAGTTTTTGCTATCAATTTTGT 58.362 29.630 0.00 0.00 31.94 2.83
195 196 9.476202 GTAGGAGTTTTTGCTATCAATTTTGTT 57.524 29.630 0.00 0.00 31.94 2.83
196 197 8.369218 AGGAGTTTTTGCTATCAATTTTGTTG 57.631 30.769 0.00 0.00 31.33 3.33
197 198 8.203485 AGGAGTTTTTGCTATCAATTTTGTTGA 58.797 29.630 0.00 0.00 31.33 3.18
198 199 8.490355 GGAGTTTTTGCTATCAATTTTGTTGAG 58.510 33.333 0.00 0.00 31.33 3.02
199 200 7.854534 AGTTTTTGCTATCAATTTTGTTGAGC 58.145 30.769 0.00 0.00 31.33 4.26
200 201 7.712205 AGTTTTTGCTATCAATTTTGTTGAGCT 59.288 29.630 0.00 0.00 33.03 4.09
201 202 8.337532 GTTTTTGCTATCAATTTTGTTGAGCTT 58.662 29.630 0.00 0.00 33.03 3.74
202 203 7.410800 TTTGCTATCAATTTTGTTGAGCTTG 57.589 32.000 0.00 0.00 33.03 4.01
203 204 5.472148 TGCTATCAATTTTGTTGAGCTTGG 58.528 37.500 0.00 0.00 33.03 3.61
204 205 5.010922 TGCTATCAATTTTGTTGAGCTTGGT 59.989 36.000 0.00 0.00 33.03 3.67
205 206 5.928264 GCTATCAATTTTGTTGAGCTTGGTT 59.072 36.000 0.00 0.00 0.00 3.67
206 207 6.089954 GCTATCAATTTTGTTGAGCTTGGTTC 59.910 38.462 0.00 0.00 0.00 3.62
207 208 5.336150 TCAATTTTGTTGAGCTTGGTTCA 57.664 34.783 0.00 0.00 0.00 3.18
208 209 5.108517 TCAATTTTGTTGAGCTTGGTTCAC 58.891 37.500 0.00 0.00 0.00 3.18
209 210 5.105392 TCAATTTTGTTGAGCTTGGTTCACT 60.105 36.000 0.00 0.00 0.00 3.41
210 211 4.799564 TTTTGTTGAGCTTGGTTCACTT 57.200 36.364 0.00 0.00 0.00 3.16
211 212 4.799564 TTTGTTGAGCTTGGTTCACTTT 57.200 36.364 0.00 0.00 0.00 2.66
212 213 4.799564 TTGTTGAGCTTGGTTCACTTTT 57.200 36.364 0.00 0.00 0.00 2.27
213 214 4.108699 TGTTGAGCTTGGTTCACTTTTG 57.891 40.909 0.00 0.00 0.00 2.44
214 215 3.509575 TGTTGAGCTTGGTTCACTTTTGT 59.490 39.130 0.00 0.00 0.00 2.83
215 216 4.021544 TGTTGAGCTTGGTTCACTTTTGTT 60.022 37.500 0.00 0.00 0.00 2.83
216 217 4.799564 TGAGCTTGGTTCACTTTTGTTT 57.200 36.364 0.00 0.00 0.00 2.83
217 218 4.493547 TGAGCTTGGTTCACTTTTGTTTG 58.506 39.130 0.00 0.00 0.00 2.93
218 219 4.219507 TGAGCTTGGTTCACTTTTGTTTGA 59.780 37.500 0.00 0.00 0.00 2.69
219 220 5.146010 AGCTTGGTTCACTTTTGTTTGAA 57.854 34.783 0.00 0.00 0.00 2.69
220 221 5.170748 AGCTTGGTTCACTTTTGTTTGAAG 58.829 37.500 0.00 0.00 32.40 3.02
221 222 4.929211 GCTTGGTTCACTTTTGTTTGAAGT 59.071 37.500 0.00 0.00 37.82 3.01
222 223 5.408299 GCTTGGTTCACTTTTGTTTGAAGTT 59.592 36.000 0.00 0.00 35.26 2.66
223 224 6.588373 GCTTGGTTCACTTTTGTTTGAAGTTA 59.412 34.615 0.00 0.00 35.26 2.24
224 225 7.277760 GCTTGGTTCACTTTTGTTTGAAGTTAT 59.722 33.333 0.00 0.00 35.26 1.89
225 226 9.150348 CTTGGTTCACTTTTGTTTGAAGTTATT 57.850 29.630 0.00 0.00 35.26 1.40
261 262 9.866798 AGAAATTTTTCAGAGGAAGAAATATGC 57.133 29.630 5.88 0.00 39.61 3.14
262 263 9.866798 GAAATTTTTCAGAGGAAGAAATATGCT 57.133 29.630 0.00 0.00 37.15 3.79
266 267 8.511604 TTTTCAGAGGAAGAAATATGCTTAGG 57.488 34.615 0.00 0.00 35.17 2.69
267 268 7.437713 TTCAGAGGAAGAAATATGCTTAGGA 57.562 36.000 0.00 0.00 0.00 2.94
268 269 7.437713 TCAGAGGAAGAAATATGCTTAGGAA 57.562 36.000 0.00 0.00 0.00 3.36
269 270 7.861629 TCAGAGGAAGAAATATGCTTAGGAAA 58.138 34.615 0.00 0.00 0.00 3.13
270 271 8.328758 TCAGAGGAAGAAATATGCTTAGGAAAA 58.671 33.333 0.00 0.00 0.00 2.29
271 272 9.129532 CAGAGGAAGAAATATGCTTAGGAAAAT 57.870 33.333 0.00 0.00 0.00 1.82
272 273 9.129532 AGAGGAAGAAATATGCTTAGGAAAATG 57.870 33.333 0.00 0.00 0.00 2.32
273 274 8.829373 AGGAAGAAATATGCTTAGGAAAATGT 57.171 30.769 0.00 0.00 0.00 2.71
274 275 9.920946 AGGAAGAAATATGCTTAGGAAAATGTA 57.079 29.630 0.00 0.00 0.00 2.29
275 276 9.952188 GGAAGAAATATGCTTAGGAAAATGTAC 57.048 33.333 0.00 0.00 0.00 2.90
276 277 9.952188 GAAGAAATATGCTTAGGAAAATGTACC 57.048 33.333 0.00 0.00 0.00 3.34
277 278 9.474313 AAGAAATATGCTTAGGAAAATGTACCA 57.526 29.630 0.00 0.00 0.00 3.25
278 279 9.474313 AGAAATATGCTTAGGAAAATGTACCAA 57.526 29.630 0.00 0.00 0.00 3.67
279 280 9.736023 GAAATATGCTTAGGAAAATGTACCAAG 57.264 33.333 0.00 0.00 0.00 3.61
280 281 7.823745 ATATGCTTAGGAAAATGTACCAAGG 57.176 36.000 0.00 0.00 0.00 3.61
281 282 4.993028 TGCTTAGGAAAATGTACCAAGGT 58.007 39.130 0.00 0.00 0.00 3.50
282 283 4.764823 TGCTTAGGAAAATGTACCAAGGTG 59.235 41.667 1.07 0.00 0.00 4.00
283 284 4.157840 GCTTAGGAAAATGTACCAAGGTGG 59.842 45.833 1.07 0.00 45.02 4.61
294 295 1.691196 CCAAGGTGGTTCTTCAAGCA 58.309 50.000 0.00 0.00 37.69 3.91
295 296 2.031120 CCAAGGTGGTTCTTCAAGCAA 58.969 47.619 0.00 0.00 41.64 3.91
296 297 2.035066 CCAAGGTGGTTCTTCAAGCAAG 59.965 50.000 0.00 0.00 41.64 4.01
297 298 1.322442 AGGTGGTTCTTCAAGCAAGC 58.678 50.000 0.00 0.00 41.64 4.01
298 299 1.032014 GGTGGTTCTTCAAGCAAGCA 58.968 50.000 0.00 0.00 41.64 3.91
299 300 1.408702 GGTGGTTCTTCAAGCAAGCAA 59.591 47.619 3.90 0.00 41.64 3.91
300 301 2.544486 GGTGGTTCTTCAAGCAAGCAAG 60.544 50.000 3.90 0.00 41.64 4.01
301 302 1.682854 TGGTTCTTCAAGCAAGCAAGG 59.317 47.619 0.00 0.00 37.07 3.61
302 303 1.956477 GGTTCTTCAAGCAAGCAAGGA 59.044 47.619 0.00 0.00 31.26 3.36
303 304 2.287849 GGTTCTTCAAGCAAGCAAGGAC 60.288 50.000 0.00 0.00 31.26 3.85
304 305 1.609208 TCTTCAAGCAAGCAAGGACC 58.391 50.000 0.00 0.00 31.26 4.46
305 306 0.600057 CTTCAAGCAAGCAAGGACCC 59.400 55.000 0.00 0.00 0.00 4.46
306 307 0.106268 TTCAAGCAAGCAAGGACCCA 60.106 50.000 0.00 0.00 0.00 4.51
307 308 0.106268 TCAAGCAAGCAAGGACCCAA 60.106 50.000 0.00 0.00 0.00 4.12
308 309 0.316204 CAAGCAAGCAAGGACCCAAG 59.684 55.000 0.00 0.00 0.00 3.61
309 310 1.466851 AAGCAAGCAAGGACCCAAGC 61.467 55.000 0.00 0.00 0.00 4.01
310 311 1.905354 GCAAGCAAGGACCCAAGCT 60.905 57.895 0.00 0.00 39.37 3.74
312 313 1.043022 CAAGCAAGGACCCAAGCTTT 58.957 50.000 11.69 0.00 44.22 3.51
313 314 1.043022 AAGCAAGGACCCAAGCTTTG 58.957 50.000 0.00 0.00 44.22 2.77
314 315 1.005748 GCAAGGACCCAAGCTTTGC 60.006 57.895 0.00 0.00 37.56 3.68
315 316 1.747325 GCAAGGACCCAAGCTTTGCA 61.747 55.000 11.23 0.00 42.63 4.08
316 317 0.752054 CAAGGACCCAAGCTTTGCAA 59.248 50.000 0.00 0.00 0.00 4.08
317 318 1.345415 CAAGGACCCAAGCTTTGCAAT 59.655 47.619 0.00 0.00 0.00 3.56
318 319 0.971386 AGGACCCAAGCTTTGCAATG 59.029 50.000 0.00 3.50 0.00 2.82
319 320 0.681175 GGACCCAAGCTTTGCAATGT 59.319 50.000 13.29 0.00 0.00 2.71
320 321 1.606224 GGACCCAAGCTTTGCAATGTG 60.606 52.381 13.29 5.32 0.00 3.21
321 322 1.069049 GACCCAAGCTTTGCAATGTGT 59.931 47.619 13.29 0.10 0.00 3.72
322 323 1.202557 ACCCAAGCTTTGCAATGTGTG 60.203 47.619 13.29 10.95 0.00 3.82
323 324 1.068895 CCCAAGCTTTGCAATGTGTGA 59.931 47.619 13.29 0.00 0.00 3.58
324 325 2.289195 CCCAAGCTTTGCAATGTGTGAT 60.289 45.455 13.29 0.00 0.00 3.06
325 326 2.734606 CCAAGCTTTGCAATGTGTGATG 59.265 45.455 13.29 6.22 0.00 3.07
326 327 2.074547 AGCTTTGCAATGTGTGATGC 57.925 45.000 13.29 0.00 42.86 3.91
327 328 1.616865 AGCTTTGCAATGTGTGATGCT 59.383 42.857 13.29 1.02 42.97 3.79
328 329 1.724623 GCTTTGCAATGTGTGATGCTG 59.275 47.619 13.29 0.00 42.97 4.41
329 330 2.608506 GCTTTGCAATGTGTGATGCTGA 60.609 45.455 13.29 0.00 42.97 4.26
330 331 3.845178 CTTTGCAATGTGTGATGCTGAT 58.155 40.909 0.00 0.00 42.97 2.90
331 332 2.931512 TGCAATGTGTGATGCTGATG 57.068 45.000 0.00 0.00 42.97 3.07
332 333 2.438411 TGCAATGTGTGATGCTGATGA 58.562 42.857 0.00 0.00 42.97 2.92
333 334 2.820787 TGCAATGTGTGATGCTGATGAA 59.179 40.909 0.00 0.00 42.97 2.57
334 335 3.119637 TGCAATGTGTGATGCTGATGAAG 60.120 43.478 0.00 0.00 42.97 3.02
335 336 3.128068 GCAATGTGTGATGCTGATGAAGA 59.872 43.478 0.00 0.00 39.46 2.87
336 337 4.380128 GCAATGTGTGATGCTGATGAAGAA 60.380 41.667 0.00 0.00 39.46 2.52
337 338 4.959596 ATGTGTGATGCTGATGAAGAAC 57.040 40.909 0.00 0.00 0.00 3.01
338 339 3.076621 TGTGTGATGCTGATGAAGAACC 58.923 45.455 0.00 0.00 0.00 3.62
339 340 3.076621 GTGTGATGCTGATGAAGAACCA 58.923 45.455 0.00 0.00 0.00 3.67
340 341 3.076621 TGTGATGCTGATGAAGAACCAC 58.923 45.455 0.00 0.00 0.00 4.16
341 342 2.421424 GTGATGCTGATGAAGAACCACC 59.579 50.000 0.00 0.00 0.00 4.61
342 343 2.040145 TGATGCTGATGAAGAACCACCA 59.960 45.455 0.00 0.00 0.00 4.17
343 344 2.655090 TGCTGATGAAGAACCACCAA 57.345 45.000 0.00 0.00 0.00 3.67
344 345 2.507484 TGCTGATGAAGAACCACCAAG 58.493 47.619 0.00 0.00 0.00 3.61
345 346 2.106338 TGCTGATGAAGAACCACCAAGA 59.894 45.455 0.00 0.00 0.00 3.02
346 347 2.746362 GCTGATGAAGAACCACCAAGAG 59.254 50.000 0.00 0.00 0.00 2.85
347 348 3.557898 GCTGATGAAGAACCACCAAGAGA 60.558 47.826 0.00 0.00 0.00 3.10
348 349 4.841422 CTGATGAAGAACCACCAAGAGAT 58.159 43.478 0.00 0.00 0.00 2.75
349 350 4.582869 TGATGAAGAACCACCAAGAGATG 58.417 43.478 0.00 0.00 0.00 2.90
350 351 2.783135 TGAAGAACCACCAAGAGATGC 58.217 47.619 0.00 0.00 0.00 3.91
351 352 2.373169 TGAAGAACCACCAAGAGATGCT 59.627 45.455 0.00 0.00 0.00 3.79
352 353 2.777832 AGAACCACCAAGAGATGCTC 57.222 50.000 0.00 0.00 0.00 4.26
353 354 1.280421 AGAACCACCAAGAGATGCTCC 59.720 52.381 0.00 0.00 0.00 4.70
354 355 1.003580 GAACCACCAAGAGATGCTCCA 59.996 52.381 0.00 0.00 0.00 3.86
355 356 1.067295 ACCACCAAGAGATGCTCCAA 58.933 50.000 0.00 0.00 0.00 3.53
356 357 1.637553 ACCACCAAGAGATGCTCCAAT 59.362 47.619 0.00 0.00 0.00 3.16
357 358 2.022195 CCACCAAGAGATGCTCCAATG 58.978 52.381 0.00 0.00 0.00 2.82
358 359 1.404391 CACCAAGAGATGCTCCAATGC 59.596 52.381 0.00 0.00 0.00 3.56
367 368 1.758936 TGCTCCAATGCATCCTTCTG 58.241 50.000 0.00 0.00 38.12 3.02
368 369 1.282738 TGCTCCAATGCATCCTTCTGA 59.717 47.619 0.00 0.00 38.12 3.27
369 370 2.291089 TGCTCCAATGCATCCTTCTGAA 60.291 45.455 0.00 0.00 38.12 3.02
370 371 2.957006 GCTCCAATGCATCCTTCTGAAT 59.043 45.455 0.00 0.00 0.00 2.57
371 372 3.243434 GCTCCAATGCATCCTTCTGAATG 60.243 47.826 0.00 0.00 0.00 2.67
372 373 3.293337 TCCAATGCATCCTTCTGAATGG 58.707 45.455 0.00 0.10 0.00 3.16
401 402 5.475564 ACACCACAACACATAATTAAGGACC 59.524 40.000 0.00 0.00 0.00 4.46
402 403 5.475220 CACCACAACACATAATTAAGGACCA 59.525 40.000 0.00 0.00 0.00 4.02
529 531 1.539560 ATGAGGACGCACAGACTGCT 61.540 55.000 1.25 0.00 44.64 4.24
536 538 2.188829 GCACAGACTGCTGGCAACA 61.189 57.895 1.25 0.00 46.60 3.33
609 611 0.246360 TATCTGCCGGAGTGTGTGTG 59.754 55.000 5.05 0.00 0.00 3.82
610 612 1.758440 ATCTGCCGGAGTGTGTGTGT 61.758 55.000 5.05 0.00 0.00 3.72
689 691 1.065418 AGTTTGCACCTAATAGCCGCT 60.065 47.619 0.00 0.00 0.00 5.52
697 699 0.465460 CTAATAGCCGCTGCCCCAAA 60.465 55.000 2.16 0.00 38.69 3.28
698 700 0.184933 TAATAGCCGCTGCCCCAAAT 59.815 50.000 2.16 0.00 38.69 2.32
951 974 4.649705 TCCCCTCTCCCGCACCAA 62.650 66.667 0.00 0.00 0.00 3.67
994 1017 3.982316 CTCCATTGGCCTGCGAGCA 62.982 63.158 3.32 0.00 0.00 4.26
1157 1180 1.152030 ACTGCTTCCTCCACCCAGA 60.152 57.895 0.00 0.00 0.00 3.86
1188 1211 4.135153 CCCGCTCTGCACTACGCT 62.135 66.667 0.00 0.00 43.06 5.07
1755 2076 5.238650 AGAGGAACACAAGTGAATTTTACCG 59.761 40.000 7.28 0.00 0.00 4.02
1862 2186 6.309737 GTGGAAGCTTCTCTTTGCATAATTTG 59.690 38.462 25.05 0.00 34.56 2.32
1906 2233 2.572104 TCCTCTTAACTTGGGGCTCTTC 59.428 50.000 0.00 0.00 0.00 2.87
1959 2286 9.590451 AATTGGTTGATCTTGCATTTTACTATG 57.410 29.630 0.00 0.00 0.00 2.23
2181 2508 9.746457 ATCTTGCTATAGATATAGACACACTGA 57.254 33.333 3.21 2.57 38.30 3.41
2201 2528 6.506500 CTGAAAGTCTGAAAATATGCTGGT 57.493 37.500 0.00 0.00 0.00 4.00
2244 2571 7.801716 AAGCAGCGATAAGGTTTATATTCAA 57.198 32.000 0.00 0.00 0.00 2.69
2259 2586 0.313672 TTCAACGGGACTGCAATTGC 59.686 50.000 23.69 23.69 42.50 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.491982 AGTCACATACCAAGGAACAATCTC 58.508 41.667 0.00 0.00 0.00 2.75
3 4 5.491982 GAGTCACATACCAAGGAACAATCT 58.508 41.667 0.00 0.00 0.00 2.40
4 5 4.636206 GGAGTCACATACCAAGGAACAATC 59.364 45.833 0.00 0.00 0.00 2.67
5 6 4.289672 AGGAGTCACATACCAAGGAACAAT 59.710 41.667 0.00 0.00 0.00 2.71
6 7 3.650942 AGGAGTCACATACCAAGGAACAA 59.349 43.478 0.00 0.00 0.00 2.83
7 8 3.248024 AGGAGTCACATACCAAGGAACA 58.752 45.455 0.00 0.00 0.00 3.18
8 9 3.515901 AGAGGAGTCACATACCAAGGAAC 59.484 47.826 0.00 0.00 0.00 3.62
9 10 3.791320 AGAGGAGTCACATACCAAGGAA 58.209 45.455 0.00 0.00 0.00 3.36
10 11 3.474798 AGAGGAGTCACATACCAAGGA 57.525 47.619 0.00 0.00 0.00 3.36
11 12 5.453903 CCAATAGAGGAGTCACATACCAAGG 60.454 48.000 0.00 0.00 0.00 3.61
12 13 5.129485 ACCAATAGAGGAGTCACATACCAAG 59.871 44.000 0.00 0.00 0.00 3.61
13 14 5.030147 ACCAATAGAGGAGTCACATACCAA 58.970 41.667 0.00 0.00 0.00 3.67
14 15 4.620723 ACCAATAGAGGAGTCACATACCA 58.379 43.478 0.00 0.00 0.00 3.25
15 16 4.039366 GGACCAATAGAGGAGTCACATACC 59.961 50.000 0.00 0.00 0.00 2.73
16 17 4.649674 TGGACCAATAGAGGAGTCACATAC 59.350 45.833 0.00 0.00 0.00 2.39
17 18 4.878968 TGGACCAATAGAGGAGTCACATA 58.121 43.478 0.00 0.00 0.00 2.29
18 19 3.724478 TGGACCAATAGAGGAGTCACAT 58.276 45.455 0.00 0.00 0.00 3.21
19 20 3.184382 TGGACCAATAGAGGAGTCACA 57.816 47.619 0.00 0.00 0.00 3.58
20 21 4.762289 ATTGGACCAATAGAGGAGTCAC 57.238 45.455 18.45 0.00 31.77 3.67
21 22 5.964477 ACTAATTGGACCAATAGAGGAGTCA 59.036 40.000 20.11 0.00 32.43 3.41
22 23 6.487299 ACTAATTGGACCAATAGAGGAGTC 57.513 41.667 20.11 0.00 32.43 3.36
23 24 6.893020 AACTAATTGGACCAATAGAGGAGT 57.107 37.500 20.11 14.25 32.43 3.85
24 25 8.462016 CAAAAACTAATTGGACCAATAGAGGAG 58.538 37.037 20.11 13.70 32.43 3.69
25 26 7.947890 ACAAAAACTAATTGGACCAATAGAGGA 59.052 33.333 20.11 3.34 32.43 3.71
26 27 8.122472 ACAAAAACTAATTGGACCAATAGAGG 57.878 34.615 20.11 12.19 32.43 3.69
27 28 9.626045 GAACAAAAACTAATTGGACCAATAGAG 57.374 33.333 20.11 20.20 32.43 2.43
28 29 9.362151 AGAACAAAAACTAATTGGACCAATAGA 57.638 29.630 20.11 10.37 32.43 1.98
31 32 9.143155 ACTAGAACAAAAACTAATTGGACCAAT 57.857 29.630 14.28 14.28 35.39 3.16
32 33 8.410141 CACTAGAACAAAAACTAATTGGACCAA 58.590 33.333 9.92 9.92 32.02 3.67
33 34 7.776030 TCACTAGAACAAAAACTAATTGGACCA 59.224 33.333 0.00 0.00 32.02 4.02
34 35 8.161699 TCACTAGAACAAAAACTAATTGGACC 57.838 34.615 0.00 0.00 32.02 4.46
55 56 8.231837 GCACAAATTTGCAATGAATAAATCACT 58.768 29.630 18.12 0.00 40.76 3.41
56 57 8.231837 AGCACAAATTTGCAATGAATAAATCAC 58.768 29.630 18.12 0.00 45.62 3.06
57 58 8.231161 CAGCACAAATTTGCAATGAATAAATCA 58.769 29.630 18.12 0.00 45.62 2.57
58 59 7.217447 GCAGCACAAATTTGCAATGAATAAATC 59.783 33.333 18.12 0.00 45.62 2.17
59 60 7.024768 GCAGCACAAATTTGCAATGAATAAAT 58.975 30.769 18.12 0.00 45.62 1.40
60 61 6.205076 AGCAGCACAAATTTGCAATGAATAAA 59.795 30.769 18.12 0.00 45.62 1.40
61 62 5.701750 AGCAGCACAAATTTGCAATGAATAA 59.298 32.000 18.12 0.00 45.62 1.40
62 63 5.239351 AGCAGCACAAATTTGCAATGAATA 58.761 33.333 18.12 0.00 45.62 1.75
63 64 4.069304 AGCAGCACAAATTTGCAATGAAT 58.931 34.783 18.12 4.31 45.62 2.57
64 65 3.468770 AGCAGCACAAATTTGCAATGAA 58.531 36.364 18.12 0.00 45.62 2.57
65 66 3.114668 AGCAGCACAAATTTGCAATGA 57.885 38.095 18.12 0.00 45.62 2.57
66 67 3.889196 AAGCAGCACAAATTTGCAATG 57.111 38.095 18.12 13.94 45.62 2.82
67 68 3.998341 CCTAAGCAGCACAAATTTGCAAT 59.002 39.130 18.12 1.02 45.62 3.56
68 69 3.181467 ACCTAAGCAGCACAAATTTGCAA 60.181 39.130 18.12 0.00 45.62 4.08
69 70 2.364970 ACCTAAGCAGCACAAATTTGCA 59.635 40.909 18.12 0.00 45.62 4.08
70 71 2.733026 CACCTAAGCAGCACAAATTTGC 59.267 45.455 18.12 6.03 43.34 3.68
71 72 3.983344 GTCACCTAAGCAGCACAAATTTG 59.017 43.478 16.67 16.67 0.00 2.32
72 73 3.005791 GGTCACCTAAGCAGCACAAATTT 59.994 43.478 0.00 0.00 0.00 1.82
73 74 2.558359 GGTCACCTAAGCAGCACAAATT 59.442 45.455 0.00 0.00 0.00 1.82
74 75 2.162681 GGTCACCTAAGCAGCACAAAT 58.837 47.619 0.00 0.00 0.00 2.32
75 76 1.604604 GGTCACCTAAGCAGCACAAA 58.395 50.000 0.00 0.00 0.00 2.83
76 77 0.250727 GGGTCACCTAAGCAGCACAA 60.251 55.000 0.00 0.00 0.00 3.33
77 78 1.374947 GGGTCACCTAAGCAGCACA 59.625 57.895 0.00 0.00 0.00 4.57
78 79 4.303257 GGGTCACCTAAGCAGCAC 57.697 61.111 0.00 0.00 0.00 4.40
88 89 0.398318 AGCTCAAGAACAGGGTCACC 59.602 55.000 0.00 0.00 0.00 4.02
89 90 1.876156 CAAGCTCAAGAACAGGGTCAC 59.124 52.381 0.00 0.00 0.00 3.67
90 91 1.815408 GCAAGCTCAAGAACAGGGTCA 60.815 52.381 0.00 0.00 0.00 4.02
91 92 0.877743 GCAAGCTCAAGAACAGGGTC 59.122 55.000 0.00 0.00 0.00 4.46
92 93 0.183492 TGCAAGCTCAAGAACAGGGT 59.817 50.000 0.00 0.00 0.00 4.34
93 94 1.201647 CATGCAAGCTCAAGAACAGGG 59.798 52.381 0.00 0.00 0.00 4.45
94 95 1.884579 ACATGCAAGCTCAAGAACAGG 59.115 47.619 0.00 0.00 0.00 4.00
95 96 2.551032 TGACATGCAAGCTCAAGAACAG 59.449 45.455 0.00 0.00 0.00 3.16
96 97 2.574450 TGACATGCAAGCTCAAGAACA 58.426 42.857 0.00 0.00 0.00 3.18
97 98 3.631145 TTGACATGCAAGCTCAAGAAC 57.369 42.857 0.00 0.00 31.55 3.01
98 99 4.859304 ATTTGACATGCAAGCTCAAGAA 57.141 36.364 0.00 0.00 37.87 2.52
99 100 4.859304 AATTTGACATGCAAGCTCAAGA 57.141 36.364 0.00 0.00 37.87 3.02
100 101 8.867112 ATATAAATTTGACATGCAAGCTCAAG 57.133 30.769 0.00 0.00 37.87 3.02
131 132 9.442047 GCCTATATCATGCATTAGAACTACTTT 57.558 33.333 0.00 0.00 0.00 2.66
132 133 8.820831 AGCCTATATCATGCATTAGAACTACTT 58.179 33.333 0.00 0.00 0.00 2.24
133 134 8.256605 CAGCCTATATCATGCATTAGAACTACT 58.743 37.037 0.00 0.00 0.00 2.57
134 135 8.037758 ACAGCCTATATCATGCATTAGAACTAC 58.962 37.037 0.00 0.00 0.00 2.73
135 136 8.138928 ACAGCCTATATCATGCATTAGAACTA 57.861 34.615 0.00 0.00 0.00 2.24
136 137 7.013823 ACAGCCTATATCATGCATTAGAACT 57.986 36.000 0.00 0.00 0.00 3.01
137 138 7.493971 CCTACAGCCTATATCATGCATTAGAAC 59.506 40.741 0.00 0.00 0.00 3.01
138 139 7.400052 TCCTACAGCCTATATCATGCATTAGAA 59.600 37.037 0.00 0.00 0.00 2.10
139 140 6.897413 TCCTACAGCCTATATCATGCATTAGA 59.103 38.462 0.00 0.00 0.00 2.10
140 141 7.117285 TCCTACAGCCTATATCATGCATTAG 57.883 40.000 0.00 0.00 0.00 1.73
141 142 7.180946 AGTTCCTACAGCCTATATCATGCATTA 59.819 37.037 0.00 0.00 0.00 1.90
142 143 6.013032 AGTTCCTACAGCCTATATCATGCATT 60.013 38.462 0.00 0.00 0.00 3.56
143 144 5.486775 AGTTCCTACAGCCTATATCATGCAT 59.513 40.000 0.00 0.00 0.00 3.96
144 145 4.840680 AGTTCCTACAGCCTATATCATGCA 59.159 41.667 0.00 0.00 0.00 3.96
145 146 5.413309 AGTTCCTACAGCCTATATCATGC 57.587 43.478 0.00 0.00 0.00 4.06
146 147 6.763355 ACAAGTTCCTACAGCCTATATCATG 58.237 40.000 0.00 0.00 0.00 3.07
147 148 7.179338 CCTACAAGTTCCTACAGCCTATATCAT 59.821 40.741 0.00 0.00 0.00 2.45
148 149 6.493802 CCTACAAGTTCCTACAGCCTATATCA 59.506 42.308 0.00 0.00 0.00 2.15
149 150 6.720288 TCCTACAAGTTCCTACAGCCTATATC 59.280 42.308 0.00 0.00 0.00 1.63
150 151 6.621394 TCCTACAAGTTCCTACAGCCTATAT 58.379 40.000 0.00 0.00 0.00 0.86
151 152 6.022107 TCCTACAAGTTCCTACAGCCTATA 57.978 41.667 0.00 0.00 0.00 1.31
152 153 4.880164 TCCTACAAGTTCCTACAGCCTAT 58.120 43.478 0.00 0.00 0.00 2.57
153 154 4.264262 ACTCCTACAAGTTCCTACAGCCTA 60.264 45.833 0.00 0.00 0.00 3.93
154 155 3.100671 CTCCTACAAGTTCCTACAGCCT 58.899 50.000 0.00 0.00 0.00 4.58
155 156 2.832733 ACTCCTACAAGTTCCTACAGCC 59.167 50.000 0.00 0.00 0.00 4.85
156 157 4.538746 AACTCCTACAAGTTCCTACAGC 57.461 45.455 0.00 0.00 34.37 4.40
157 158 6.293462 GCAAAAACTCCTACAAGTTCCTACAG 60.293 42.308 0.00 0.00 38.52 2.74
158 159 5.529800 GCAAAAACTCCTACAAGTTCCTACA 59.470 40.000 0.00 0.00 38.52 2.74
159 160 5.763698 AGCAAAAACTCCTACAAGTTCCTAC 59.236 40.000 0.00 0.00 38.52 3.18
160 161 5.937111 AGCAAAAACTCCTACAAGTTCCTA 58.063 37.500 0.00 0.00 38.52 2.94
161 162 4.793201 AGCAAAAACTCCTACAAGTTCCT 58.207 39.130 0.00 0.00 38.52 3.36
162 163 6.430000 TGATAGCAAAAACTCCTACAAGTTCC 59.570 38.462 0.00 0.00 38.52 3.62
163 164 7.435068 TGATAGCAAAAACTCCTACAAGTTC 57.565 36.000 0.00 0.00 38.52 3.01
164 165 7.817418 TTGATAGCAAAAACTCCTACAAGTT 57.183 32.000 0.00 0.00 41.20 2.66
165 166 8.409358 AATTGATAGCAAAAACTCCTACAAGT 57.591 30.769 0.00 0.00 37.59 3.16
166 167 9.696917 AAAATTGATAGCAAAAACTCCTACAAG 57.303 29.630 0.00 0.00 37.59 3.16
167 168 9.474920 CAAAATTGATAGCAAAAACTCCTACAA 57.525 29.630 0.00 0.00 37.59 2.41
168 169 8.637986 ACAAAATTGATAGCAAAAACTCCTACA 58.362 29.630 0.00 0.00 37.59 2.74
169 170 9.476202 AACAAAATTGATAGCAAAAACTCCTAC 57.524 29.630 0.00 0.00 37.59 3.18
170 171 9.474920 CAACAAAATTGATAGCAAAAACTCCTA 57.525 29.630 0.00 0.00 37.59 2.94
171 172 8.203485 TCAACAAAATTGATAGCAAAAACTCCT 58.797 29.630 0.00 0.00 37.59 3.69
172 173 8.364129 TCAACAAAATTGATAGCAAAAACTCC 57.636 30.769 0.00 0.00 37.59 3.85
173 174 8.006027 GCTCAACAAAATTGATAGCAAAAACTC 58.994 33.333 0.00 0.00 37.59 3.01
174 175 7.712205 AGCTCAACAAAATTGATAGCAAAAACT 59.288 29.630 0.00 0.00 37.59 2.66
175 176 7.854534 AGCTCAACAAAATTGATAGCAAAAAC 58.145 30.769 0.00 0.00 37.59 2.43
176 177 8.336806 CAAGCTCAACAAAATTGATAGCAAAAA 58.663 29.630 0.00 0.00 37.59 1.94
177 178 7.041916 CCAAGCTCAACAAAATTGATAGCAAAA 60.042 33.333 0.00 0.00 37.59 2.44
178 179 6.424509 CCAAGCTCAACAAAATTGATAGCAAA 59.575 34.615 0.00 0.00 37.59 3.68
179 180 5.927689 CCAAGCTCAACAAAATTGATAGCAA 59.072 36.000 0.00 0.00 38.60 3.91
180 181 5.010922 ACCAAGCTCAACAAAATTGATAGCA 59.989 36.000 15.75 0.00 35.11 3.49
181 182 5.473039 ACCAAGCTCAACAAAATTGATAGC 58.527 37.500 0.00 5.76 33.90 2.97
182 183 7.115378 GTGAACCAAGCTCAACAAAATTGATAG 59.885 37.037 0.00 0.00 0.00 2.08
183 184 6.922957 GTGAACCAAGCTCAACAAAATTGATA 59.077 34.615 0.00 0.00 0.00 2.15
184 185 5.754890 GTGAACCAAGCTCAACAAAATTGAT 59.245 36.000 0.00 0.00 0.00 2.57
185 186 5.105392 AGTGAACCAAGCTCAACAAAATTGA 60.105 36.000 0.00 0.00 0.00 2.57
186 187 5.111293 AGTGAACCAAGCTCAACAAAATTG 58.889 37.500 0.00 0.00 0.00 2.32
187 188 5.343307 AGTGAACCAAGCTCAACAAAATT 57.657 34.783 0.00 0.00 0.00 1.82
188 189 5.343307 AAGTGAACCAAGCTCAACAAAAT 57.657 34.783 0.00 0.00 0.00 1.82
189 190 4.799564 AAGTGAACCAAGCTCAACAAAA 57.200 36.364 0.00 0.00 0.00 2.44
190 191 4.799564 AAAGTGAACCAAGCTCAACAAA 57.200 36.364 0.00 0.00 0.00 2.83
191 192 4.021544 ACAAAAGTGAACCAAGCTCAACAA 60.022 37.500 0.00 0.00 0.00 2.83
192 193 3.509575 ACAAAAGTGAACCAAGCTCAACA 59.490 39.130 0.00 0.00 0.00 3.33
193 194 4.110036 ACAAAAGTGAACCAAGCTCAAC 57.890 40.909 0.00 0.00 0.00 3.18
194 195 4.799564 AACAAAAGTGAACCAAGCTCAA 57.200 36.364 0.00 0.00 0.00 3.02
195 196 4.219507 TCAAACAAAAGTGAACCAAGCTCA 59.780 37.500 0.00 0.00 0.00 4.26
196 197 4.743493 TCAAACAAAAGTGAACCAAGCTC 58.257 39.130 0.00 0.00 0.00 4.09
197 198 4.799564 TCAAACAAAAGTGAACCAAGCT 57.200 36.364 0.00 0.00 0.00 3.74
198 199 4.929211 ACTTCAAACAAAAGTGAACCAAGC 59.071 37.500 0.00 0.00 35.68 4.01
199 200 8.702163 ATAACTTCAAACAAAAGTGAACCAAG 57.298 30.769 0.00 0.00 37.06 3.61
235 236 9.866798 GCATATTTCTTCCTCTGAAAAATTTCT 57.133 29.630 7.36 0.00 37.05 2.52
236 237 9.866798 AGCATATTTCTTCCTCTGAAAAATTTC 57.133 29.630 0.00 0.00 37.05 2.17
240 241 8.960591 CCTAAGCATATTTCTTCCTCTGAAAAA 58.039 33.333 0.00 0.00 37.05 1.94
241 242 8.328758 TCCTAAGCATATTTCTTCCTCTGAAAA 58.671 33.333 0.00 0.00 37.05 2.29
242 243 7.861629 TCCTAAGCATATTTCTTCCTCTGAAA 58.138 34.615 0.00 0.00 37.74 2.69
243 244 7.437713 TCCTAAGCATATTTCTTCCTCTGAA 57.562 36.000 0.00 0.00 0.00 3.02
244 245 7.437713 TTCCTAAGCATATTTCTTCCTCTGA 57.562 36.000 0.00 0.00 0.00 3.27
245 246 8.511604 TTTTCCTAAGCATATTTCTTCCTCTG 57.488 34.615 0.00 0.00 0.00 3.35
246 247 9.129532 CATTTTCCTAAGCATATTTCTTCCTCT 57.870 33.333 0.00 0.00 0.00 3.69
247 248 8.907885 ACATTTTCCTAAGCATATTTCTTCCTC 58.092 33.333 0.00 0.00 0.00 3.71
248 249 8.829373 ACATTTTCCTAAGCATATTTCTTCCT 57.171 30.769 0.00 0.00 0.00 3.36
249 250 9.952188 GTACATTTTCCTAAGCATATTTCTTCC 57.048 33.333 0.00 0.00 0.00 3.46
250 251 9.952188 GGTACATTTTCCTAAGCATATTTCTTC 57.048 33.333 0.00 0.00 0.00 2.87
251 252 9.474313 TGGTACATTTTCCTAAGCATATTTCTT 57.526 29.630 0.00 0.00 0.00 2.52
252 253 9.474313 TTGGTACATTTTCCTAAGCATATTTCT 57.526 29.630 0.00 0.00 39.30 2.52
253 254 9.736023 CTTGGTACATTTTCCTAAGCATATTTC 57.264 33.333 0.00 0.00 39.30 2.17
254 255 8.695456 CCTTGGTACATTTTCCTAAGCATATTT 58.305 33.333 0.00 0.00 39.30 1.40
255 256 7.839200 ACCTTGGTACATTTTCCTAAGCATATT 59.161 33.333 0.00 0.00 39.30 1.28
256 257 7.285401 CACCTTGGTACATTTTCCTAAGCATAT 59.715 37.037 0.00 0.00 39.30 1.78
257 258 6.601613 CACCTTGGTACATTTTCCTAAGCATA 59.398 38.462 0.00 0.00 39.30 3.14
258 259 5.418840 CACCTTGGTACATTTTCCTAAGCAT 59.581 40.000 0.00 0.00 39.30 3.79
259 260 4.764823 CACCTTGGTACATTTTCCTAAGCA 59.235 41.667 0.00 0.00 39.30 3.91
260 261 4.157840 CCACCTTGGTACATTTTCCTAAGC 59.842 45.833 0.00 0.00 39.30 3.09
261 262 5.897377 CCACCTTGGTACATTTTCCTAAG 57.103 43.478 0.00 0.00 39.30 2.18
275 276 1.691196 TGCTTGAAGAACCACCTTGG 58.309 50.000 0.00 0.00 45.02 3.61
276 277 2.544486 GCTTGCTTGAAGAACCACCTTG 60.544 50.000 0.00 0.00 32.82 3.61
277 278 1.683385 GCTTGCTTGAAGAACCACCTT 59.317 47.619 0.00 0.00 32.82 3.50
278 279 1.322442 GCTTGCTTGAAGAACCACCT 58.678 50.000 0.00 0.00 32.82 4.00
279 280 1.032014 TGCTTGCTTGAAGAACCACC 58.968 50.000 0.00 0.00 32.82 4.61
280 281 2.544486 CCTTGCTTGCTTGAAGAACCAC 60.544 50.000 0.00 0.00 32.82 4.16
281 282 1.682854 CCTTGCTTGCTTGAAGAACCA 59.317 47.619 0.00 0.00 32.82 3.67
282 283 1.956477 TCCTTGCTTGCTTGAAGAACC 59.044 47.619 0.00 0.00 32.82 3.62
283 284 2.287849 GGTCCTTGCTTGCTTGAAGAAC 60.288 50.000 0.00 0.00 32.82 3.01
284 285 1.956477 GGTCCTTGCTTGCTTGAAGAA 59.044 47.619 0.00 0.00 32.82 2.52
285 286 1.609208 GGTCCTTGCTTGCTTGAAGA 58.391 50.000 0.00 0.00 32.82 2.87
286 287 0.600057 GGGTCCTTGCTTGCTTGAAG 59.400 55.000 0.00 0.00 34.41 3.02
287 288 0.106268 TGGGTCCTTGCTTGCTTGAA 60.106 50.000 0.00 0.00 0.00 2.69
288 289 0.106268 TTGGGTCCTTGCTTGCTTGA 60.106 50.000 0.00 0.00 0.00 3.02
289 290 0.316204 CTTGGGTCCTTGCTTGCTTG 59.684 55.000 0.00 0.00 0.00 4.01
290 291 1.466851 GCTTGGGTCCTTGCTTGCTT 61.467 55.000 0.00 0.00 0.00 3.91
291 292 1.905354 GCTTGGGTCCTTGCTTGCT 60.905 57.895 0.00 0.00 0.00 3.91
292 293 1.466851 AAGCTTGGGTCCTTGCTTGC 61.467 55.000 15.09 0.00 43.09 4.01
293 294 1.043022 AAAGCTTGGGTCCTTGCTTG 58.957 50.000 16.03 0.00 43.80 4.01
294 295 1.043022 CAAAGCTTGGGTCCTTGCTT 58.957 50.000 0.00 11.83 46.11 3.91
295 296 1.466851 GCAAAGCTTGGGTCCTTGCT 61.467 55.000 0.00 1.91 37.37 3.91
296 297 1.005748 GCAAAGCTTGGGTCCTTGC 60.006 57.895 0.00 0.00 0.00 4.01
297 298 0.752054 TTGCAAAGCTTGGGTCCTTG 59.248 50.000 0.00 0.00 0.00 3.61
298 299 1.345415 CATTGCAAAGCTTGGGTCCTT 59.655 47.619 1.71 0.00 0.00 3.36
299 300 0.971386 CATTGCAAAGCTTGGGTCCT 59.029 50.000 1.71 0.00 0.00 3.85
300 301 0.681175 ACATTGCAAAGCTTGGGTCC 59.319 50.000 1.71 0.00 0.00 4.46
301 302 1.069049 ACACATTGCAAAGCTTGGGTC 59.931 47.619 1.71 0.00 26.58 4.46
302 303 1.122227 ACACATTGCAAAGCTTGGGT 58.878 45.000 1.71 0.55 0.00 4.51
303 304 1.068895 TCACACATTGCAAAGCTTGGG 59.931 47.619 1.71 0.00 0.00 4.12
304 305 2.512485 TCACACATTGCAAAGCTTGG 57.488 45.000 1.71 0.00 0.00 3.61
305 306 2.156891 GCATCACACATTGCAAAGCTTG 59.843 45.455 1.71 0.00 38.72 4.01
306 307 2.036733 AGCATCACACATTGCAAAGCTT 59.963 40.909 1.71 0.00 41.35 3.74
307 308 1.616865 AGCATCACACATTGCAAAGCT 59.383 42.857 1.71 0.38 41.35 3.74
308 309 1.724623 CAGCATCACACATTGCAAAGC 59.275 47.619 1.71 0.00 41.35 3.51
309 310 3.291809 TCAGCATCACACATTGCAAAG 57.708 42.857 1.71 0.19 41.35 2.77
310 311 3.256136 TCATCAGCATCACACATTGCAAA 59.744 39.130 1.71 0.00 41.35 3.68
311 312 2.820787 TCATCAGCATCACACATTGCAA 59.179 40.909 0.00 0.00 41.35 4.08
312 313 2.438411 TCATCAGCATCACACATTGCA 58.562 42.857 0.00 0.00 41.35 4.08
313 314 3.128068 TCTTCATCAGCATCACACATTGC 59.872 43.478 0.00 0.00 39.17 3.56
314 315 4.957759 TCTTCATCAGCATCACACATTG 57.042 40.909 0.00 0.00 0.00 2.82
315 316 4.157289 GGTTCTTCATCAGCATCACACATT 59.843 41.667 0.00 0.00 0.00 2.71
316 317 3.693085 GGTTCTTCATCAGCATCACACAT 59.307 43.478 0.00 0.00 0.00 3.21
317 318 3.076621 GGTTCTTCATCAGCATCACACA 58.923 45.455 0.00 0.00 0.00 3.72
318 319 3.076621 TGGTTCTTCATCAGCATCACAC 58.923 45.455 0.00 0.00 0.00 3.82
319 320 3.076621 GTGGTTCTTCATCAGCATCACA 58.923 45.455 0.00 0.00 0.00 3.58
320 321 2.421424 GGTGGTTCTTCATCAGCATCAC 59.579 50.000 0.00 0.00 0.00 3.06
321 322 2.040145 TGGTGGTTCTTCATCAGCATCA 59.960 45.455 0.00 0.00 34.55 3.07
322 323 2.715046 TGGTGGTTCTTCATCAGCATC 58.285 47.619 0.00 0.00 34.55 3.91
323 324 2.885135 TGGTGGTTCTTCATCAGCAT 57.115 45.000 0.00 0.00 34.55 3.79
324 325 2.106338 TCTTGGTGGTTCTTCATCAGCA 59.894 45.455 0.00 0.00 37.17 4.41
325 326 2.746362 CTCTTGGTGGTTCTTCATCAGC 59.254 50.000 0.00 0.00 0.00 4.26
326 327 4.277515 TCTCTTGGTGGTTCTTCATCAG 57.722 45.455 0.00 0.00 0.00 2.90
327 328 4.582869 CATCTCTTGGTGGTTCTTCATCA 58.417 43.478 0.00 0.00 0.00 3.07
328 329 3.376546 GCATCTCTTGGTGGTTCTTCATC 59.623 47.826 0.00 0.00 0.00 2.92
329 330 3.009916 AGCATCTCTTGGTGGTTCTTCAT 59.990 43.478 0.00 0.00 33.95 2.57
330 331 2.373169 AGCATCTCTTGGTGGTTCTTCA 59.627 45.455 0.00 0.00 33.95 3.02
331 332 3.006247 GAGCATCTCTTGGTGGTTCTTC 58.994 50.000 0.00 0.00 35.82 2.87
332 333 2.290577 GGAGCATCTCTTGGTGGTTCTT 60.291 50.000 0.00 0.00 35.82 2.52
333 334 1.280421 GGAGCATCTCTTGGTGGTTCT 59.720 52.381 0.00 0.00 35.82 3.01
334 335 1.003580 TGGAGCATCTCTTGGTGGTTC 59.996 52.381 0.00 0.00 35.82 3.62
335 336 1.067295 TGGAGCATCTCTTGGTGGTT 58.933 50.000 0.00 0.00 35.82 3.67
336 337 1.067295 TTGGAGCATCTCTTGGTGGT 58.933 50.000 0.00 0.00 35.82 4.16
337 338 2.022195 CATTGGAGCATCTCTTGGTGG 58.978 52.381 0.00 0.00 35.82 4.61
338 339 1.404391 GCATTGGAGCATCTCTTGGTG 59.596 52.381 0.00 0.00 35.82 4.17
339 340 1.005097 TGCATTGGAGCATCTCTTGGT 59.995 47.619 0.00 0.00 40.11 3.67
340 341 1.758936 TGCATTGGAGCATCTCTTGG 58.241 50.000 0.00 0.00 40.11 3.61
349 350 2.048444 TCAGAAGGATGCATTGGAGC 57.952 50.000 0.00 0.00 0.00 4.70
350 351 3.318275 CCATTCAGAAGGATGCATTGGAG 59.682 47.826 0.00 0.00 0.00 3.86
351 352 3.293337 CCATTCAGAAGGATGCATTGGA 58.707 45.455 0.00 0.00 0.00 3.53
352 353 2.223971 GCCATTCAGAAGGATGCATTGG 60.224 50.000 0.00 1.89 0.00 3.16
353 354 2.429250 TGCCATTCAGAAGGATGCATTG 59.571 45.455 0.00 0.00 0.00 2.82
354 355 2.429610 GTGCCATTCAGAAGGATGCATT 59.570 45.455 0.00 0.00 30.75 3.56
355 356 2.029623 GTGCCATTCAGAAGGATGCAT 58.970 47.619 0.00 0.00 30.75 3.96
356 357 1.005097 AGTGCCATTCAGAAGGATGCA 59.995 47.619 0.00 0.00 0.00 3.96
357 358 1.760192 AGTGCCATTCAGAAGGATGC 58.240 50.000 0.00 0.00 0.00 3.91
358 359 3.624861 GTGTAGTGCCATTCAGAAGGATG 59.375 47.826 0.00 0.00 0.00 3.51
359 360 3.370953 GGTGTAGTGCCATTCAGAAGGAT 60.371 47.826 0.00 0.00 0.00 3.24
360 361 2.027192 GGTGTAGTGCCATTCAGAAGGA 60.027 50.000 0.00 0.00 0.00 3.36
361 362 2.290260 TGGTGTAGTGCCATTCAGAAGG 60.290 50.000 0.00 0.00 0.00 3.46
362 363 2.744202 GTGGTGTAGTGCCATTCAGAAG 59.256 50.000 0.00 0.00 38.40 2.85
363 364 2.105649 TGTGGTGTAGTGCCATTCAGAA 59.894 45.455 0.00 0.00 38.40 3.02
364 365 1.696884 TGTGGTGTAGTGCCATTCAGA 59.303 47.619 0.00 0.00 38.40 3.27
365 366 2.183478 TGTGGTGTAGTGCCATTCAG 57.817 50.000 0.00 0.00 38.40 3.02
366 367 2.226330 GTTGTGGTGTAGTGCCATTCA 58.774 47.619 0.00 0.00 38.40 2.57
367 368 2.031157 GTGTTGTGGTGTAGTGCCATTC 60.031 50.000 0.00 0.00 38.40 2.67
368 369 1.953686 GTGTTGTGGTGTAGTGCCATT 59.046 47.619 0.00 0.00 38.40 3.16
369 370 1.133945 TGTGTTGTGGTGTAGTGCCAT 60.134 47.619 0.00 0.00 38.40 4.40
370 371 0.253327 TGTGTTGTGGTGTAGTGCCA 59.747 50.000 0.00 0.00 0.00 4.92
371 372 1.604604 ATGTGTTGTGGTGTAGTGCC 58.395 50.000 0.00 0.00 0.00 5.01
372 373 5.371115 AATTATGTGTTGTGGTGTAGTGC 57.629 39.130 0.00 0.00 0.00 4.40
401 402 6.485313 TCAACTATTTATCCCGGCAGTTAATG 59.515 38.462 0.00 0.00 0.00 1.90
402 403 6.597562 TCAACTATTTATCCCGGCAGTTAAT 58.402 36.000 0.00 0.00 0.00 1.40
529 531 6.481644 GTCCTTACAAATGAAAATTGTTGCCA 59.518 34.615 0.00 0.00 41.11 4.92
536 538 9.912634 CATACTGTGTCCTTACAAATGAAAATT 57.087 29.630 0.00 0.00 37.36 1.82
609 611 2.673368 CAATTTCAGTCTCGTGCCCTAC 59.327 50.000 0.00 0.00 0.00 3.18
610 612 2.354704 CCAATTTCAGTCTCGTGCCCTA 60.355 50.000 0.00 0.00 0.00 3.53
689 691 1.499007 GGGGAAGATCTATTTGGGGCA 59.501 52.381 0.00 0.00 0.00 5.36
697 699 4.202472 GGGTTCGATTTGGGGAAGATCTAT 60.202 45.833 0.00 0.00 0.00 1.98
698 700 3.135895 GGGTTCGATTTGGGGAAGATCTA 59.864 47.826 0.00 0.00 0.00 1.98
771 778 1.668101 GGAGATCGAAGGCAGACGGT 61.668 60.000 0.00 0.00 0.00 4.83
951 974 3.703127 GGACTTCTCCGCGGGGTT 61.703 66.667 27.35 10.95 33.83 4.11
971 994 2.988839 GCAGGCCAATGGAGGAGGT 61.989 63.158 5.01 0.00 0.00 3.85
994 1017 3.257873 CCTCTATCGCTTCTCATCACCAT 59.742 47.826 0.00 0.00 0.00 3.55
1755 2076 8.950208 AAGAAGAATAGAACTGGCATAACTAC 57.050 34.615 0.00 0.00 0.00 2.73
1862 2186 9.289782 AGGAAAAATATAGATGCATCAGTAACC 57.710 33.333 27.81 16.91 0.00 2.85
2126 2453 0.611618 ATCAAAGGTGCGGCAATGGA 60.612 50.000 3.23 0.00 0.00 3.41
2166 2493 8.988064 TTTCAGACTTTCAGTGTGTCTATATC 57.012 34.615 12.93 0.00 40.09 1.63
2172 2499 6.798959 GCATATTTTCAGACTTTCAGTGTGTC 59.201 38.462 1.39 0.00 40.09 3.67
2181 2508 7.814587 GCTTTTACCAGCATATTTTCAGACTTT 59.185 33.333 0.00 0.00 39.83 2.66
2227 2554 7.307811 GCAGTCCCGTTGAATATAAACCTTATC 60.308 40.741 0.00 0.00 0.00 1.75
2244 2571 2.031919 TCGCAATTGCAGTCCCGT 59.968 55.556 28.77 0.00 42.21 5.28
2259 2586 4.338682 AGGAGTTGTAGCTATAAGGTGTCG 59.661 45.833 2.77 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.