Multiple sequence alignment - TraesCS3A01G495600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G495600 chr3A 100.000 2693 0 0 1 2693 721508560 721511252 0.000000e+00 4974.0
1 TraesCS3A01G495600 chr3A 77.787 1265 191 49 445 1646 725103370 725104607 0.000000e+00 697.0
2 TraesCS3A01G495600 chr3A 82.381 420 44 13 1244 1646 725154933 725155339 3.320000e-89 339.0
3 TraesCS3A01G495600 chr3A 84.682 346 45 6 2281 2623 726012313 726011973 3.320000e-89 339.0
4 TraesCS3A01G495600 chr3A 81.592 402 59 7 1330 1728 725455459 725455848 4.330000e-83 318.0
5 TraesCS3A01G495600 chr3A 81.490 416 47 14 1251 1646 725091242 725091647 5.600000e-82 315.0
6 TraesCS3A01G495600 chr3A 86.517 267 34 2 2358 2623 726011750 726011485 2.620000e-75 292.0
7 TraesCS3A01G495600 chr3A 89.109 101 11 0 1916 2016 725456113 725456213 2.810000e-25 126.0
8 TraesCS3A01G495600 chr3D 90.815 2232 99 27 81 2280 591123838 591125995 0.000000e+00 2889.0
9 TraesCS3A01G495600 chr3D 85.113 1236 145 21 383 1598 591176916 591178132 0.000000e+00 1227.0
10 TraesCS3A01G495600 chr3D 79.058 616 90 19 1064 1646 594540460 594541069 1.170000e-103 387.0
11 TraesCS3A01G495600 chr3D 80.861 418 56 12 1249 1646 594694467 594694880 9.370000e-80 307.0
12 TraesCS3A01G495600 chrUn 89.725 1966 123 27 218 2167 155025428 155023526 0.000000e+00 2438.0
13 TraesCS3A01G495600 chrUn 85.377 1354 169 17 383 1722 154993288 154991950 0.000000e+00 1376.0
14 TraesCS3A01G495600 chrUn 89.672 823 46 8 218 1029 419646926 419647720 0.000000e+00 1013.0
15 TraesCS3A01G495600 chrUn 86.799 553 31 10 1742 2282 155023949 155023427 1.800000e-161 579.0
16 TraesCS3A01G495600 chrUn 95.556 90 4 0 1 90 155025842 155025753 7.770000e-31 145.0
17 TraesCS3A01G495600 chrUn 95.556 90 4 0 1 90 403241761 403241850 7.770000e-31 145.0
18 TraesCS3A01G495600 chrUn 95.556 90 4 0 1 90 419646512 419646601 7.770000e-31 145.0
19 TraesCS3A01G495600 chrUn 86.885 61 7 1 383 443 405499627 405499568 1.730000e-07 67.6
20 TraesCS3A01G495600 chrUn 100.000 35 0 0 2281 2315 195052163 195052129 6.220000e-07 65.8
21 TraesCS3A01G495600 chrUn 100.000 35 0 0 2281 2315 231152264 231152298 6.220000e-07 65.8
22 TraesCS3A01G495600 chrUn 100.000 32 0 0 2284 2315 195050535 195050504 2.900000e-05 60.2
23 TraesCS3A01G495600 chr3B 89.674 1966 124 27 218 2167 792355516 792357418 0.000000e+00 2433.0
24 TraesCS3A01G495600 chr3B 88.462 1846 119 30 328 2167 793383968 793382211 0.000000e+00 2143.0
25 TraesCS3A01G495600 chr3B 94.191 1291 66 5 440 1728 792266838 792268121 0.000000e+00 1960.0
26 TraesCS3A01G495600 chr3B 91.308 1300 74 10 218 1507 792442264 792443534 0.000000e+00 1738.0
27 TraesCS3A01G495600 chr3B 84.263 1506 176 33 424 1910 793369350 793367887 0.000000e+00 1411.0
28 TraesCS3A01G495600 chr3B 85.377 1354 169 20 383 1722 792300944 792302282 0.000000e+00 1376.0
29 TraesCS3A01G495600 chr3B 93.541 836 51 3 895 1728 793475046 793474212 0.000000e+00 1242.0
30 TraesCS3A01G495600 chr3B 80.170 1291 213 25 453 1717 798155202 798156475 0.000000e+00 926.0
31 TraesCS3A01G495600 chr3B 86.618 553 32 10 1742 2282 792356995 792357517 8.360000e-160 573.0
32 TraesCS3A01G495600 chr3B 89.535 430 27 9 1742 2167 793474226 793473811 1.840000e-146 529.0
33 TraesCS3A01G495600 chr3B 88.679 265 18 3 1909 2167 792268205 792268463 2.010000e-81 313.0
34 TraesCS3A01G495600 chr3B 94.393 107 4 2 1742 1848 792268107 792268211 2.150000e-36 163.0
35 TraesCS3A01G495600 chr3B 95.556 90 4 0 1 90 792351529 792351618 7.770000e-31 145.0
36 TraesCS3A01G495600 chr3B 95.556 90 4 0 1 90 792355102 792355191 7.770000e-31 145.0
37 TraesCS3A01G495600 chr3B 95.556 90 4 0 1 90 792441851 792441940 7.770000e-31 145.0
38 TraesCS3A01G495600 chr3B 94.444 90 5 0 1 90 793388361 793388272 3.620000e-29 139.0
39 TraesCS3A01G495600 chr3B 81.053 190 16 10 89 258 792265607 792265796 1.680000e-27 134.0
40 TraesCS3A01G495600 chr3B 89.000 100 3 1 2191 2282 792268463 792268562 1.690000e-22 117.0
41 TraesCS3A01G495600 chr3B 89.000 100 3 1 2191 2282 793473811 793473712 1.690000e-22 117.0
42 TraesCS3A01G495600 chr3B 93.939 66 1 1 218 280 793387947 793387882 2.210000e-16 97.1
43 TraesCS3A01G495600 chr5B 78.199 1266 178 53 541 1724 539616774 539615525 0.000000e+00 719.0
44 TraesCS3A01G495600 chr4A 91.040 346 25 5 2280 2625 658107878 658107539 1.890000e-126 462.0
45 TraesCS3A01G495600 chr4A 90.141 355 30 2 2280 2634 658068898 658068549 8.790000e-125 457.0
46 TraesCS3A01G495600 chr4A 81.728 301 54 1 2324 2623 493828778 493828478 1.600000e-62 250.0
47 TraesCS3A01G495600 chr4A 97.143 70 2 0 2624 2693 41063258 41063189 4.710000e-23 119.0
48 TraesCS3A01G495600 chr6A 91.883 308 25 0 2318 2625 24768692 24768999 5.330000e-117 431.0
49 TraesCS3A01G495600 chr6A 95.890 73 3 0 2621 2693 296672973 296673045 4.710000e-23 119.0
50 TraesCS3A01G495600 chr6A 97.143 70 2 0 2624 2693 518890618 518890549 4.710000e-23 119.0
51 TraesCS3A01G495600 chr1A 83.721 344 45 7 2281 2623 549334501 549334168 5.600000e-82 315.0
52 TraesCS3A01G495600 chr1A 97.143 70 2 0 2624 2693 276689642 276689573 4.710000e-23 119.0
53 TraesCS3A01G495600 chr1A 97.143 70 2 0 2624 2693 447385204 447385135 4.710000e-23 119.0
54 TraesCS3A01G495600 chr1A 95.890 73 3 0 2621 2693 487759223 487759295 4.710000e-23 119.0
55 TraesCS3A01G495600 chr1A 100.000 35 0 0 2281 2315 64752167 64752133 6.220000e-07 65.8
56 TraesCS3A01G495600 chr4B 84.385 301 47 0 2323 2623 81010545 81010245 2.030000e-76 296.0
57 TraesCS3A01G495600 chr4B 100.000 35 0 0 2281 2315 527108625 527108659 6.220000e-07 65.8
58 TraesCS3A01G495600 chr2A 87.302 252 32 0 2372 2623 741739157 741738906 3.390000e-74 289.0
59 TraesCS3A01G495600 chr5D 79.279 333 55 8 2281 2610 227398355 227398676 1.260000e-53 220.0
60 TraesCS3A01G495600 chr5A 95.890 73 3 0 2621 2693 267428098 267428170 4.710000e-23 119.0
61 TraesCS3A01G495600 chr5A 95.890 73 3 0 2621 2693 366681651 366681723 4.710000e-23 119.0
62 TraesCS3A01G495600 chr5A 97.143 70 2 0 2624 2693 639035864 639035795 4.710000e-23 119.0
63 TraesCS3A01G495600 chr5A 100.000 35 0 0 2281 2315 602793793 602793759 6.220000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G495600 chr3A 721508560 721511252 2692 False 4974.000000 4974 100.000000 1 2693 1 chr3A.!!$F1 2692
1 TraesCS3A01G495600 chr3A 725103370 725104607 1237 False 697.000000 697 77.787000 445 1646 1 chr3A.!!$F3 1201
2 TraesCS3A01G495600 chr3A 726011485 726012313 828 True 315.500000 339 85.599500 2281 2623 2 chr3A.!!$R1 342
3 TraesCS3A01G495600 chr3A 725455459 725456213 754 False 222.000000 318 85.350500 1330 2016 2 chr3A.!!$F5 686
4 TraesCS3A01G495600 chr3D 591123838 591125995 2157 False 2889.000000 2889 90.815000 81 2280 1 chr3D.!!$F1 2199
5 TraesCS3A01G495600 chr3D 591176916 591178132 1216 False 1227.000000 1227 85.113000 383 1598 1 chr3D.!!$F2 1215
6 TraesCS3A01G495600 chr3D 594540460 594541069 609 False 387.000000 387 79.058000 1064 1646 1 chr3D.!!$F3 582
7 TraesCS3A01G495600 chrUn 154991950 154993288 1338 True 1376.000000 1376 85.377000 383 1722 1 chrUn.!!$R1 1339
8 TraesCS3A01G495600 chrUn 155023427 155025842 2415 True 1054.000000 2438 90.693333 1 2282 3 chrUn.!!$R3 2281
9 TraesCS3A01G495600 chrUn 419646512 419647720 1208 False 579.000000 1013 92.614000 1 1029 2 chrUn.!!$F3 1028
10 TraesCS3A01G495600 chr3B 793367887 793369350 1463 True 1411.000000 1411 84.263000 424 1910 1 chr3B.!!$R1 1486
11 TraesCS3A01G495600 chr3B 792300944 792302282 1338 False 1376.000000 1376 85.377000 383 1722 1 chr3B.!!$F1 1339
12 TraesCS3A01G495600 chr3B 792441851 792443534 1683 False 941.500000 1738 93.432000 1 1507 2 chr3B.!!$F5 1506
13 TraesCS3A01G495600 chr3B 798155202 798156475 1273 False 926.000000 926 80.170000 453 1717 1 chr3B.!!$F2 1264
14 TraesCS3A01G495600 chr3B 792351529 792357517 5988 False 824.000000 2433 91.851000 1 2282 4 chr3B.!!$F4 2281
15 TraesCS3A01G495600 chr3B 793382211 793388361 6150 True 793.033333 2143 92.281667 1 2167 3 chr3B.!!$R2 2166
16 TraesCS3A01G495600 chr3B 793473712 793475046 1334 True 629.333333 1242 90.692000 895 2282 3 chr3B.!!$R3 1387
17 TraesCS3A01G495600 chr3B 792265607 792268562 2955 False 537.400000 1960 89.463200 89 2282 5 chr3B.!!$F3 2193
18 TraesCS3A01G495600 chr5B 539615525 539616774 1249 True 719.000000 719 78.199000 541 1724 1 chr5B.!!$R1 1183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 3811 0.239347 CGGCCAGTTTTGCTTCTCAG 59.761 55.0 2.24 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 11037 0.250234 TCCTTCAGGCGAACATCCAG 59.75 55.0 0.0 0.0 34.44 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 3811 0.239347 CGGCCAGTTTTGCTTCTCAG 59.761 55.000 2.24 0.00 0.00 3.35
117 3815 2.287849 GCCAGTTTTGCTTCTCAGGAAC 60.288 50.000 0.00 0.00 28.35 3.62
120 3818 4.389374 CAGTTTTGCTTCTCAGGAACCTA 58.611 43.478 0.00 0.00 28.35 3.08
258 4099 2.676471 GCCAGGCCGAACCAACAT 60.676 61.111 0.00 0.00 43.14 2.71
370 8114 2.586792 GATTCCGACAGCCCAGCT 59.413 61.111 0.00 0.00 40.77 4.24
371 8115 1.078143 GATTCCGACAGCCCAGCTT 60.078 57.895 0.00 0.00 36.40 3.74
372 8116 1.078143 ATTCCGACAGCCCAGCTTC 60.078 57.895 0.00 0.00 36.40 3.86
373 8117 1.557269 ATTCCGACAGCCCAGCTTCT 61.557 55.000 0.00 0.00 36.40 2.85
374 8118 1.768684 TTCCGACAGCCCAGCTTCTT 61.769 55.000 0.00 0.00 36.40 2.52
375 8119 1.302832 CCGACAGCCCAGCTTCTTT 60.303 57.895 0.00 0.00 36.40 2.52
376 8120 0.890996 CCGACAGCCCAGCTTCTTTT 60.891 55.000 0.00 0.00 36.40 2.27
377 8121 0.519077 CGACAGCCCAGCTTCTTTTC 59.481 55.000 0.00 0.00 36.40 2.29
378 8122 1.879796 CGACAGCCCAGCTTCTTTTCT 60.880 52.381 0.00 0.00 36.40 2.52
379 8123 1.538950 GACAGCCCAGCTTCTTTTCTG 59.461 52.381 0.00 0.00 36.40 3.02
381 8125 0.480252 AGCCCAGCTTCTTTTCTGGT 59.520 50.000 7.41 0.00 46.43 4.00
385 8129 2.030805 CCCAGCTTCTTTTCTGGTTTCG 60.031 50.000 7.41 0.00 46.43 3.46
418 9081 6.183360 TGCTATATATACGATCAAGGCTGCAT 60.183 38.462 0.50 0.00 0.00 3.96
434 9097 3.713936 CATGCTTGCACATCACCAG 57.286 52.632 0.00 0.00 0.00 4.00
506 9170 1.729470 CCTCCTGTCGTCGATCCTGG 61.729 65.000 0.00 0.16 0.00 4.45
510 9174 1.137086 CCTGTCGTCGATCCTGGAATT 59.863 52.381 0.00 0.00 0.00 2.17
511 9175 2.464865 CTGTCGTCGATCCTGGAATTC 58.535 52.381 0.00 0.00 0.00 2.17
739 9412 3.005539 ATGACTGCCGGCTCCACT 61.006 61.111 29.70 6.79 0.00 4.00
740 9413 3.023949 ATGACTGCCGGCTCCACTC 62.024 63.158 29.70 14.36 0.00 3.51
741 9414 4.459089 GACTGCCGGCTCCACTCC 62.459 72.222 29.70 5.90 0.00 3.85
743 9416 4.767255 CTGCCGGCTCCACTCCAC 62.767 72.222 29.70 0.00 0.00 4.02
1000 9703 1.079621 TTCCAGCGAGGGAAGGGTA 59.920 57.895 4.31 0.00 41.92 3.69
1020 9728 2.042831 GTGGTCACCAGAGCCATGC 61.043 63.158 0.00 0.00 41.53 4.06
1214 9928 9.585099 TTATGAATTATTGACCACTTTTGATGC 57.415 29.630 0.00 0.00 0.00 3.91
1217 9931 1.686355 TTGACCACTTTTGATGCGGT 58.314 45.000 0.00 0.00 0.00 5.68
1344 10139 7.015682 AGAGATGTCGAACCTGGTAATATCATT 59.984 37.037 0.00 0.00 0.00 2.57
1439 10273 1.421268 TGCTTTGTGGGTCACTCTCAT 59.579 47.619 0.00 0.00 35.11 2.90
1460 10294 0.804989 GTGGATGTTCTTGAAGCGGG 59.195 55.000 0.00 0.00 0.00 6.13
1490 10324 1.004277 ACACGATTGGGTGCCACTAAT 59.996 47.619 0.00 0.00 41.65 1.73
1647 10488 3.041508 ACTTCTAGCCGTCAAAGTTCC 57.958 47.619 0.00 0.00 0.00 3.62
1651 10501 4.386867 TCTAGCCGTCAAAGTTCCATAG 57.613 45.455 0.00 0.00 0.00 2.23
1722 10575 5.726980 AAAAGGCTGCATTACAATCTTGA 57.273 34.783 0.00 0.00 0.00 3.02
1723 10576 5.726980 AAAGGCTGCATTACAATCTTGAA 57.273 34.783 0.00 0.00 0.00 2.69
1724 10577 5.726980 AAGGCTGCATTACAATCTTGAAA 57.273 34.783 0.00 0.00 0.00 2.69
1725 10578 5.927281 AGGCTGCATTACAATCTTGAAAT 57.073 34.783 0.50 0.00 0.00 2.17
1726 10579 5.899299 AGGCTGCATTACAATCTTGAAATC 58.101 37.500 0.50 0.00 0.00 2.17
1727 10580 5.655532 AGGCTGCATTACAATCTTGAAATCT 59.344 36.000 0.50 0.00 0.00 2.40
1728 10581 6.154021 AGGCTGCATTACAATCTTGAAATCTT 59.846 34.615 0.50 0.00 0.00 2.40
1729 10582 6.815142 GGCTGCATTACAATCTTGAAATCTTT 59.185 34.615 0.50 0.00 0.00 2.52
1730 10583 7.332678 GGCTGCATTACAATCTTGAAATCTTTT 59.667 33.333 0.50 0.00 0.00 2.27
1731 10584 8.715088 GCTGCATTACAATCTTGAAATCTTTTT 58.285 29.630 0.00 0.00 0.00 1.94
1876 10733 9.976511 CTATTAGTTGTTGGTCGGATTATAAGA 57.023 33.333 0.00 0.00 0.00 2.10
1921 10910 5.221342 GGACTGCTCAGCAATAGTATAGTGT 60.221 44.000 0.00 0.00 39.19 3.55
1928 10917 7.597288 TCAGCAATAGTATAGTGTGTGGTAT 57.403 36.000 0.00 0.00 39.19 2.73
2016 11005 8.997621 TTATGTCTTGGTTCTGTATGTAGTTC 57.002 34.615 0.00 0.00 0.00 3.01
2047 11037 3.982576 ATTGTTTGTCCGGTGAAGTTC 57.017 42.857 0.00 0.00 0.00 3.01
2051 11041 1.124780 TTGTCCGGTGAAGTTCTGGA 58.875 50.000 0.00 6.24 37.94 3.86
2114 11105 3.626217 TGCGACGAGATACAGATAGTGTT 59.374 43.478 0.00 0.00 40.94 3.32
2140 11137 7.871853 GTGTGATACAACACCTTTGATTTAGT 58.128 34.615 0.00 0.00 43.84 2.24
2166 11163 3.605634 GTGTTGTGCCATACATACCTGA 58.394 45.455 0.00 0.00 39.48 3.86
2167 11164 4.006989 GTGTTGTGCCATACATACCTGAA 58.993 43.478 0.00 0.00 39.48 3.02
2168 11165 4.640201 GTGTTGTGCCATACATACCTGAAT 59.360 41.667 0.00 0.00 39.48 2.57
2169 11166 5.820423 GTGTTGTGCCATACATACCTGAATA 59.180 40.000 0.00 0.00 39.48 1.75
2170 11167 6.486657 GTGTTGTGCCATACATACCTGAATAT 59.513 38.462 0.00 0.00 39.48 1.28
2171 11168 7.013274 GTGTTGTGCCATACATACCTGAATATT 59.987 37.037 0.00 0.00 39.48 1.28
2172 11169 7.559533 TGTTGTGCCATACATACCTGAATATTT 59.440 33.333 0.00 0.00 39.48 1.40
2173 11170 8.413229 GTTGTGCCATACATACCTGAATATTTT 58.587 33.333 0.00 0.00 39.48 1.82
2174 11171 8.532186 TGTGCCATACATACCTGAATATTTTT 57.468 30.769 0.00 0.00 33.42 1.94
2311 11316 9.772973 GTATTCTTGGTTTGGTTTAATCCTTTT 57.227 29.630 4.25 0.00 0.00 2.27
2312 11317 8.902540 ATTCTTGGTTTGGTTTAATCCTTTTC 57.097 30.769 4.25 0.00 0.00 2.29
2313 11318 6.508777 TCTTGGTTTGGTTTAATCCTTTTCG 58.491 36.000 4.25 0.00 0.00 3.46
2314 11319 5.855740 TGGTTTGGTTTAATCCTTTTCGT 57.144 34.783 4.25 0.00 0.00 3.85
2315 11320 5.593010 TGGTTTGGTTTAATCCTTTTCGTG 58.407 37.500 4.25 0.00 0.00 4.35
2327 11332 2.601266 CCTTTTCGTGCGTTGATTTCGT 60.601 45.455 0.00 0.00 0.00 3.85
2331 11336 1.328069 TCGTGCGTTGATTTCGTTTGT 59.672 42.857 0.00 0.00 0.00 2.83
2342 11347 1.540407 TTCGTTTGTTTTGAGCGCAC 58.460 45.000 11.47 3.13 0.00 5.34
2376 11871 5.868043 TCGTACGATTCTCTCTACACAAA 57.132 39.130 15.28 0.00 0.00 2.83
2377 11872 6.245115 TCGTACGATTCTCTCTACACAAAA 57.755 37.500 15.28 0.00 0.00 2.44
2385 11880 7.225538 CGATTCTCTCTACACAAAATAAGCCAT 59.774 37.037 0.00 0.00 0.00 4.40
2387 11882 7.187824 TCTCTCTACACAAAATAAGCCATCT 57.812 36.000 0.00 0.00 0.00 2.90
2404 11899 0.698238 TCTGGGCCAAGTGCTTGTAT 59.302 50.000 8.04 0.00 40.92 2.29
2423 11918 4.411869 TGTATGTTGATGGGCCTTCTATGA 59.588 41.667 19.03 4.87 0.00 2.15
2424 11919 3.565764 TGTTGATGGGCCTTCTATGAG 57.434 47.619 19.03 0.00 0.00 2.90
2425 11920 3.114606 TGTTGATGGGCCTTCTATGAGA 58.885 45.455 19.03 0.00 0.00 3.27
2428 11923 5.136105 GTTGATGGGCCTTCTATGAGATTT 58.864 41.667 19.03 0.00 0.00 2.17
2429 11924 5.393068 TGATGGGCCTTCTATGAGATTTT 57.607 39.130 19.03 0.00 0.00 1.82
2431 11926 7.095183 TGATGGGCCTTCTATGAGATTTTAT 57.905 36.000 19.03 0.00 0.00 1.40
2432 11927 7.529555 TGATGGGCCTTCTATGAGATTTTATT 58.470 34.615 19.03 0.00 0.00 1.40
2433 11928 8.668653 TGATGGGCCTTCTATGAGATTTTATTA 58.331 33.333 19.03 0.00 0.00 0.98
2439 11934 8.713271 GCCTTCTATGAGATTTTATTAAGACCG 58.287 37.037 0.00 0.00 0.00 4.79
2440 11935 8.713271 CCTTCTATGAGATTTTATTAAGACCGC 58.287 37.037 0.00 0.00 0.00 5.68
2446 11941 7.808672 TGAGATTTTATTAAGACCGCGAAAAA 58.191 30.769 8.23 1.69 0.00 1.94
2448 11943 8.614994 AGATTTTATTAAGACCGCGAAAAATG 57.385 30.769 8.23 0.00 0.00 2.32
2478 11973 7.158021 GGTCAAAATAAATCAACATTGTGGGA 58.842 34.615 0.00 0.00 0.00 4.37
2480 11975 9.218440 GTCAAAATAAATCAACATTGTGGGAAT 57.782 29.630 0.00 0.00 0.00 3.01
2486 11981 5.804944 ATCAACATTGTGGGAATTGAACA 57.195 34.783 0.00 0.00 33.29 3.18
2487 11982 5.199024 TCAACATTGTGGGAATTGAACAG 57.801 39.130 0.00 0.00 0.00 3.16
2489 11984 5.009911 TCAACATTGTGGGAATTGAACAGAG 59.990 40.000 0.00 0.00 0.00 3.35
2496 11991 2.356227 GGGAATTGAACAGAGGACCTCC 60.356 54.545 18.32 3.19 0.00 4.30
2517 12012 3.937706 CCTGTCTGGCTCTTCAATGTAAG 59.062 47.826 0.00 0.00 0.00 2.34
2524 12019 5.324409 TGGCTCTTCAATGTAAGAACCAAT 58.676 37.500 12.05 0.00 44.71 3.16
2542 12037 5.138276 ACCAATGAGCTATGCATCTTTCAT 58.862 37.500 0.19 8.14 0.00 2.57
2543 12038 6.301486 ACCAATGAGCTATGCATCTTTCATA 58.699 36.000 0.19 0.00 0.00 2.15
2552 12047 9.578576 AGCTATGCATCTTTCATATTTCCTAAA 57.421 29.630 0.19 0.00 0.00 1.85
2558 12053 8.084684 GCATCTTTCATATTTCCTAAATCCACC 58.915 37.037 0.00 0.00 32.38 4.61
2578 12073 5.327091 CACCTCGCTCTTTTACAATGATTG 58.673 41.667 3.16 3.16 0.00 2.67
2594 12089 7.940850 ACAATGATTGCCACCAGTAAATATAC 58.059 34.615 4.84 0.00 0.00 1.47
2599 12094 2.729882 GCCACCAGTAAATATACGAGCG 59.270 50.000 0.00 0.00 37.11 5.03
2623 12118 2.488891 CCCAGGAATCAACCAACAGACA 60.489 50.000 0.00 0.00 0.00 3.41
2624 12119 3.424703 CCAGGAATCAACCAACAGACAT 58.575 45.455 0.00 0.00 0.00 3.06
2625 12120 3.828451 CCAGGAATCAACCAACAGACATT 59.172 43.478 0.00 0.00 0.00 2.71
2626 12121 4.321452 CCAGGAATCAACCAACAGACATTG 60.321 45.833 0.00 0.00 0.00 2.82
2627 12122 4.279169 CAGGAATCAACCAACAGACATTGT 59.721 41.667 0.00 0.00 43.45 2.71
2628 12123 5.473162 CAGGAATCAACCAACAGACATTGTA 59.527 40.000 0.00 0.00 39.73 2.41
2629 12124 6.016360 CAGGAATCAACCAACAGACATTGTAA 60.016 38.462 0.00 0.00 39.73 2.41
2630 12125 6.207417 AGGAATCAACCAACAGACATTGTAAG 59.793 38.462 0.00 0.00 39.73 2.34
2631 12126 5.964958 ATCAACCAACAGACATTGTAAGG 57.035 39.130 0.00 0.00 39.73 2.69
2632 12127 4.141287 TCAACCAACAGACATTGTAAGGG 58.859 43.478 0.00 0.00 39.73 3.95
2633 12128 2.514803 ACCAACAGACATTGTAAGGGC 58.485 47.619 0.00 0.00 39.73 5.19
2634 12129 2.158534 ACCAACAGACATTGTAAGGGCA 60.159 45.455 0.00 0.00 39.73 5.36
2635 12130 3.091545 CCAACAGACATTGTAAGGGCAT 58.908 45.455 0.00 0.00 39.73 4.40
2636 12131 4.263727 ACCAACAGACATTGTAAGGGCATA 60.264 41.667 0.00 0.00 39.73 3.14
2637 12132 4.889409 CCAACAGACATTGTAAGGGCATAT 59.111 41.667 0.00 0.00 39.73 1.78
2638 12133 5.360714 CCAACAGACATTGTAAGGGCATATT 59.639 40.000 0.00 0.00 39.73 1.28
2639 12134 6.127366 CCAACAGACATTGTAAGGGCATATTT 60.127 38.462 0.00 0.00 39.73 1.40
2640 12135 7.068103 CCAACAGACATTGTAAGGGCATATTTA 59.932 37.037 0.00 0.00 39.73 1.40
2641 12136 8.632679 CAACAGACATTGTAAGGGCATATTTAT 58.367 33.333 0.00 0.00 39.73 1.40
2642 12137 8.396272 ACAGACATTGTAAGGGCATATTTATC 57.604 34.615 0.00 0.00 38.56 1.75
2643 12138 7.448469 ACAGACATTGTAAGGGCATATTTATCC 59.552 37.037 0.00 0.00 38.56 2.59
2644 12139 6.948309 AGACATTGTAAGGGCATATTTATCCC 59.052 38.462 0.00 0.00 40.36 3.85
2652 12147 5.256806 GGGCATATTTATCCCTAAGGTGT 57.743 43.478 0.00 0.00 37.08 4.16
2653 12148 5.641155 GGGCATATTTATCCCTAAGGTGTT 58.359 41.667 0.00 0.00 37.08 3.32
2654 12149 6.075315 GGGCATATTTATCCCTAAGGTGTTT 58.925 40.000 0.00 0.00 37.08 2.83
2655 12150 6.553476 GGGCATATTTATCCCTAAGGTGTTTT 59.447 38.462 0.00 0.00 37.08 2.43
2656 12151 7.433680 GGCATATTTATCCCTAAGGTGTTTTG 58.566 38.462 0.00 0.00 0.00 2.44
2657 12152 7.433680 GCATATTTATCCCTAAGGTGTTTTGG 58.566 38.462 0.00 0.00 0.00 3.28
2658 12153 7.286775 GCATATTTATCCCTAAGGTGTTTTGGA 59.713 37.037 0.00 0.00 34.04 3.53
2659 12154 8.850156 CATATTTATCCCTAAGGTGTTTTGGAG 58.150 37.037 0.00 0.00 34.04 3.86
2660 12155 6.457159 TTTATCCCTAAGGTGTTTTGGAGA 57.543 37.500 0.00 0.00 34.04 3.71
2661 12156 6.652205 TTATCCCTAAGGTGTTTTGGAGAT 57.348 37.500 0.00 0.00 34.04 2.75
2662 12157 5.536497 ATCCCTAAGGTGTTTTGGAGATT 57.464 39.130 0.00 0.00 34.04 2.40
2663 12158 4.662278 TCCCTAAGGTGTTTTGGAGATTG 58.338 43.478 0.00 0.00 34.04 2.67
2664 12159 4.352595 TCCCTAAGGTGTTTTGGAGATTGA 59.647 41.667 0.00 0.00 34.04 2.57
2665 12160 5.015178 TCCCTAAGGTGTTTTGGAGATTGAT 59.985 40.000 0.00 0.00 34.04 2.57
2666 12161 5.126061 CCCTAAGGTGTTTTGGAGATTGATG 59.874 44.000 0.00 0.00 34.04 3.07
2667 12162 5.945784 CCTAAGGTGTTTTGGAGATTGATGA 59.054 40.000 0.00 0.00 34.04 2.92
2668 12163 5.712152 AAGGTGTTTTGGAGATTGATGAC 57.288 39.130 0.00 0.00 0.00 3.06
2669 12164 4.728772 AGGTGTTTTGGAGATTGATGACA 58.271 39.130 0.00 0.00 0.00 3.58
2670 12165 5.139727 AGGTGTTTTGGAGATTGATGACAA 58.860 37.500 0.00 0.00 40.42 3.18
2671 12166 5.010012 AGGTGTTTTGGAGATTGATGACAAC 59.990 40.000 0.00 0.00 38.90 3.32
2672 12167 4.911610 GTGTTTTGGAGATTGATGACAACG 59.088 41.667 0.00 0.00 38.90 4.10
2673 12168 3.829886 TTTGGAGATTGATGACAACGC 57.170 42.857 0.00 0.00 38.90 4.84
2674 12169 2.470983 TGGAGATTGATGACAACGCA 57.529 45.000 0.00 0.00 38.90 5.24
2675 12170 2.989909 TGGAGATTGATGACAACGCAT 58.010 42.857 0.00 0.00 38.90 4.73
2676 12171 3.346315 TGGAGATTGATGACAACGCATT 58.654 40.909 0.00 0.00 38.90 3.56
2677 12172 3.758023 TGGAGATTGATGACAACGCATTT 59.242 39.130 0.00 0.00 38.90 2.32
2678 12173 4.100529 GGAGATTGATGACAACGCATTTG 58.899 43.478 0.00 0.00 38.90 2.32
2679 12174 3.504863 AGATTGATGACAACGCATTTGC 58.495 40.909 0.00 0.00 39.01 3.68
2692 12187 3.698029 GCATTTGCGGACTAATCATGT 57.302 42.857 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 3651 2.280797 GGTGTGTTGCAGCTCCGA 60.281 61.111 1.17 0.00 41.99 4.55
117 3815 4.176752 GCCTGGCCGGGAAGTAGG 62.177 72.222 36.08 17.05 0.00 3.18
164 3965 0.821301 TCAAGAAACACGCATGGCCA 60.821 50.000 8.56 8.56 0.00 5.36
258 4099 5.451937 CCATATTGAAGAAGCGGAGTACTGA 60.452 44.000 0.00 0.00 0.00 3.41
314 8052 3.342719 TGGTCACGTGTACGATTACCTA 58.657 45.455 16.51 2.43 43.02 3.08
370 8114 4.703093 ACCAGAAACGAAACCAGAAAAGAA 59.297 37.500 0.00 0.00 0.00 2.52
371 8115 4.095782 CACCAGAAACGAAACCAGAAAAGA 59.904 41.667 0.00 0.00 0.00 2.52
372 8116 4.351192 CACCAGAAACGAAACCAGAAAAG 58.649 43.478 0.00 0.00 0.00 2.27
373 8117 3.428316 GCACCAGAAACGAAACCAGAAAA 60.428 43.478 0.00 0.00 0.00 2.29
374 8118 2.098443 GCACCAGAAACGAAACCAGAAA 59.902 45.455 0.00 0.00 0.00 2.52
375 8119 1.673920 GCACCAGAAACGAAACCAGAA 59.326 47.619 0.00 0.00 0.00 3.02
376 8120 1.134220 AGCACCAGAAACGAAACCAGA 60.134 47.619 0.00 0.00 0.00 3.86
377 8121 1.308998 AGCACCAGAAACGAAACCAG 58.691 50.000 0.00 0.00 0.00 4.00
378 8122 2.623878 TAGCACCAGAAACGAAACCA 57.376 45.000 0.00 0.00 0.00 3.67
379 8123 7.148853 CGTATATATAGCACCAGAAACGAAACC 60.149 40.741 0.00 0.00 0.00 3.27
380 8124 7.592533 TCGTATATATAGCACCAGAAACGAAAC 59.407 37.037 0.00 0.00 33.27 2.78
381 8125 7.650890 TCGTATATATAGCACCAGAAACGAAA 58.349 34.615 0.00 0.00 33.27 3.46
385 8129 8.981724 TTGATCGTATATATAGCACCAGAAAC 57.018 34.615 0.00 0.00 0.00 2.78
418 9081 1.522668 GTACTGGTGATGTGCAAGCA 58.477 50.000 0.00 0.00 0.00 3.91
506 9170 1.427020 GCAGGAGTGCGCAGAATTC 59.573 57.895 12.22 6.46 40.71 2.17
977 9680 1.473434 CCTTCCCTCGCTGGAATACAC 60.473 57.143 6.02 0.00 43.29 2.90
1000 9703 0.034767 CATGGCTCTGGTGACCACAT 60.035 55.000 0.00 0.00 35.99 3.21
1020 9728 2.164624 GAGGTAGGTATATGGAGCTGCG 59.835 54.545 0.00 0.00 31.14 5.18
1134 9845 2.282816 CCCATTGCAACCACGGGA 60.283 61.111 16.48 0.00 39.44 5.14
1214 9928 2.158914 TCATTCTGGTCATCATCCACCG 60.159 50.000 0.00 0.00 35.15 4.94
1217 9931 5.190330 TCTTCTTCATTCTGGTCATCATCCA 59.810 40.000 0.00 0.00 0.00 3.41
1344 10139 0.906066 TGAGGTGCCGGCTAATTACA 59.094 50.000 29.70 16.57 0.00 2.41
1439 10273 1.522668 CGCTTCAAGAACATCCACCA 58.477 50.000 0.00 0.00 0.00 4.17
1460 10294 1.135689 CCCAATCGTGTGTGCTAAAGC 60.136 52.381 0.00 0.00 42.50 3.51
1876 10733 3.494048 CCATCTCTTTGGAATAGCGAGCT 60.494 47.826 2.25 2.25 39.25 4.09
1921 10910 4.305769 GCAAAAGCAATCAACATACCACA 58.694 39.130 0.00 0.00 0.00 4.17
1928 10917 2.485124 CCCAAGGCAAAAGCAATCAACA 60.485 45.455 0.00 0.00 0.00 3.33
2016 11005 4.181578 CGGACAAACAATACCCTAGAGTG 58.818 47.826 0.00 0.00 0.00 3.51
2047 11037 0.250234 TCCTTCAGGCGAACATCCAG 59.750 55.000 0.00 0.00 34.44 3.86
2140 11137 2.575805 TGTATGGCACAACACCATCA 57.424 45.000 0.00 0.00 44.85 3.07
2173 11170 7.989416 ACAGGTATGTATCCTTTTCGAAAAA 57.011 32.000 22.67 10.76 38.09 1.94
2187 11184 8.873144 GGGTTAGTTTCCATATACAGGTATGTA 58.127 37.037 2.25 0.00 45.73 2.29
2188 11185 7.571357 AGGGTTAGTTTCCATATACAGGTATGT 59.429 37.037 2.25 0.00 43.76 2.29
2189 11186 7.974504 AGGGTTAGTTTCCATATACAGGTATG 58.025 38.462 2.25 0.00 32.95 2.39
2238 11235 7.827729 ACAAAACCACCTAATAGGACTATTGAC 59.172 37.037 14.17 0.00 37.67 3.18
2245 11250 9.841295 TTATATGACAAAACCACCTAATAGGAC 57.159 33.333 14.17 0.00 37.67 3.85
2284 11289 7.476540 AGGATTAAACCAAACCAAGAATACC 57.523 36.000 4.40 0.00 31.49 2.73
2293 11298 4.446385 GCACGAAAAGGATTAAACCAAACC 59.554 41.667 4.40 0.00 0.00 3.27
2294 11299 4.147479 CGCACGAAAAGGATTAAACCAAAC 59.853 41.667 4.40 0.00 0.00 2.93
2299 11304 4.529446 TCAACGCACGAAAAGGATTAAAC 58.471 39.130 0.00 0.00 0.00 2.01
2304 11309 3.666902 CGAAATCAACGCACGAAAAGGAT 60.667 43.478 0.00 0.00 0.00 3.24
2311 11316 1.328069 ACAAACGAAATCAACGCACGA 59.672 42.857 0.00 0.00 0.00 4.35
2312 11317 1.737249 ACAAACGAAATCAACGCACG 58.263 45.000 0.00 0.00 0.00 5.34
2313 11318 4.030753 TCAAAACAAACGAAATCAACGCAC 59.969 37.500 0.00 0.00 0.00 5.34
2314 11319 4.166523 TCAAAACAAACGAAATCAACGCA 58.833 34.783 0.00 0.00 0.00 5.24
2315 11320 4.736562 CTCAAAACAAACGAAATCAACGC 58.263 39.130 0.00 0.00 0.00 4.84
2327 11332 3.990141 GCGTGCGCTCAAAACAAA 58.010 50.000 9.73 0.00 38.26 2.83
2356 11361 8.533153 GCTTATTTTGTGTAGAGAGAATCGTAC 58.467 37.037 0.00 0.00 42.67 3.67
2365 11860 6.115446 CCAGATGGCTTATTTTGTGTAGAGA 58.885 40.000 0.00 0.00 0.00 3.10
2385 11880 0.698238 ATACAAGCACTTGGCCCAGA 59.302 50.000 11.55 0.00 46.50 3.86
2387 11882 0.112218 ACATACAAGCACTTGGCCCA 59.888 50.000 14.51 0.00 46.50 5.36
2391 11886 3.119388 CCCATCAACATACAAGCACTTGG 60.119 47.826 14.51 0.13 44.45 3.61
2394 11889 2.094675 GCCCATCAACATACAAGCACT 58.905 47.619 0.00 0.00 0.00 4.40
2397 11892 1.767759 AGGCCCATCAACATACAAGC 58.232 50.000 0.00 0.00 0.00 4.01
2404 11899 3.114606 TCTCATAGAAGGCCCATCAACA 58.885 45.455 0.00 0.00 0.00 3.33
2423 11918 8.455682 TCATTTTTCGCGGTCTTAATAAAATCT 58.544 29.630 6.13 0.00 0.00 2.40
2424 11919 8.609478 TCATTTTTCGCGGTCTTAATAAAATC 57.391 30.769 6.13 0.00 0.00 2.17
2425 11920 9.581099 AATCATTTTTCGCGGTCTTAATAAAAT 57.419 25.926 6.13 3.75 0.00 1.82
2428 11923 6.970043 CCAATCATTTTTCGCGGTCTTAATAA 59.030 34.615 6.13 0.00 0.00 1.40
2429 11924 6.459024 CCCAATCATTTTTCGCGGTCTTAATA 60.459 38.462 6.13 0.00 0.00 0.98
2431 11926 4.380023 CCCAATCATTTTTCGCGGTCTTAA 60.380 41.667 6.13 0.00 0.00 1.85
2432 11927 3.127895 CCCAATCATTTTTCGCGGTCTTA 59.872 43.478 6.13 0.00 0.00 2.10
2433 11928 2.094752 CCCAATCATTTTTCGCGGTCTT 60.095 45.455 6.13 0.00 0.00 3.01
2439 11934 5.861222 ATTTTGACCCAATCATTTTTCGC 57.139 34.783 0.00 0.00 37.11 4.70
2440 11935 9.971744 GATTTATTTTGACCCAATCATTTTTCG 57.028 29.630 0.00 0.00 37.11 3.46
2446 11941 9.962809 AATGTTGATTTATTTTGACCCAATCAT 57.037 25.926 0.00 0.00 37.11 2.45
2448 11943 9.218440 ACAATGTTGATTTATTTTGACCCAATC 57.782 29.630 0.00 0.00 0.00 2.67
2478 11973 2.982488 ACAGGAGGTCCTCTGTTCAATT 59.018 45.455 18.58 0.00 46.65 2.32
2480 11975 1.971357 GACAGGAGGTCCTCTGTTCAA 59.029 52.381 18.58 0.00 46.65 2.69
2496 11991 4.825422 TCTTACATTGAAGAGCCAGACAG 58.175 43.478 0.00 0.00 31.72 3.51
2517 12012 5.066893 TGAAAGATGCATAGCTCATTGGTTC 59.933 40.000 0.00 0.00 0.00 3.62
2524 12019 7.229308 AGGAAATATGAAAGATGCATAGCTCA 58.771 34.615 0.00 2.66 32.28 4.26
2542 12037 4.654262 AGAGCGAGGTGGATTTAGGAAATA 59.346 41.667 0.00 0.00 0.00 1.40
2543 12038 3.456277 AGAGCGAGGTGGATTTAGGAAAT 59.544 43.478 0.00 0.00 0.00 2.17
2552 12047 3.695830 TTGTAAAAGAGCGAGGTGGAT 57.304 42.857 0.00 0.00 0.00 3.41
2553 12048 3.007506 TCATTGTAAAAGAGCGAGGTGGA 59.992 43.478 0.00 0.00 0.00 4.02
2558 12053 4.142622 TGGCAATCATTGTAAAAGAGCGAG 60.143 41.667 0.00 0.00 0.00 5.03
2578 12073 2.729882 CGCTCGTATATTTACTGGTGGC 59.270 50.000 0.00 0.00 0.00 5.01
2594 12089 4.918201 GATTCCTGGGGCCGCTCG 62.918 72.222 21.80 11.68 0.00 5.03
2599 12094 1.078347 TTGGTTGATTCCTGGGGCC 59.922 57.895 0.00 0.00 0.00 5.80
2630 12125 5.256806 ACACCTTAGGGATAAATATGCCC 57.743 43.478 2.32 0.00 44.38 5.36
2631 12126 7.433680 CAAAACACCTTAGGGATAAATATGCC 58.566 38.462 2.32 2.96 43.72 4.40
2632 12127 7.286775 TCCAAAACACCTTAGGGATAAATATGC 59.713 37.037 2.32 0.00 36.25 3.14
2633 12128 8.760980 TCCAAAACACCTTAGGGATAAATATG 57.239 34.615 2.32 0.00 36.25 1.78
2634 12129 8.787818 TCTCCAAAACACCTTAGGGATAAATAT 58.212 33.333 2.32 0.00 36.25 1.28
2635 12130 8.165267 TCTCCAAAACACCTTAGGGATAAATA 57.835 34.615 2.32 0.00 36.25 1.40
2636 12131 7.039722 TCTCCAAAACACCTTAGGGATAAAT 57.960 36.000 2.32 0.00 36.25 1.40
2637 12132 6.457159 TCTCCAAAACACCTTAGGGATAAA 57.543 37.500 2.32 0.00 36.25 1.40
2638 12133 6.652205 ATCTCCAAAACACCTTAGGGATAA 57.348 37.500 2.32 0.00 36.25 1.75
2639 12134 6.216662 TCAATCTCCAAAACACCTTAGGGATA 59.783 38.462 2.32 0.00 36.25 2.59
2640 12135 5.015178 TCAATCTCCAAAACACCTTAGGGAT 59.985 40.000 2.32 0.00 36.25 3.85
2641 12136 4.352595 TCAATCTCCAAAACACCTTAGGGA 59.647 41.667 2.32 0.00 36.25 4.20
2642 12137 4.662278 TCAATCTCCAAAACACCTTAGGG 58.338 43.478 2.32 0.00 38.88 3.53
2643 12138 5.945784 TCATCAATCTCCAAAACACCTTAGG 59.054 40.000 0.00 0.00 0.00 2.69
2644 12139 6.430925 TGTCATCAATCTCCAAAACACCTTAG 59.569 38.462 0.00 0.00 0.00 2.18
2645 12140 6.303054 TGTCATCAATCTCCAAAACACCTTA 58.697 36.000 0.00 0.00 0.00 2.69
2646 12141 5.139727 TGTCATCAATCTCCAAAACACCTT 58.860 37.500 0.00 0.00 0.00 3.50
2647 12142 4.728772 TGTCATCAATCTCCAAAACACCT 58.271 39.130 0.00 0.00 0.00 4.00
2648 12143 5.222631 GTTGTCATCAATCTCCAAAACACC 58.777 41.667 0.00 0.00 35.92 4.16
2649 12144 4.911610 CGTTGTCATCAATCTCCAAAACAC 59.088 41.667 0.00 0.00 35.92 3.32
2650 12145 4.556501 GCGTTGTCATCAATCTCCAAAACA 60.557 41.667 0.00 0.00 35.92 2.83
2651 12146 3.914364 GCGTTGTCATCAATCTCCAAAAC 59.086 43.478 0.00 0.00 35.92 2.43
2652 12147 3.567585 TGCGTTGTCATCAATCTCCAAAA 59.432 39.130 0.00 0.00 35.92 2.44
2653 12148 3.145286 TGCGTTGTCATCAATCTCCAAA 58.855 40.909 0.00 0.00 35.92 3.28
2654 12149 2.777094 TGCGTTGTCATCAATCTCCAA 58.223 42.857 0.00 0.00 35.92 3.53
2655 12150 2.470983 TGCGTTGTCATCAATCTCCA 57.529 45.000 0.00 0.00 35.92 3.86
2656 12151 4.100529 CAAATGCGTTGTCATCAATCTCC 58.899 43.478 0.00 0.00 35.92 3.71
2657 12152 3.545078 GCAAATGCGTTGTCATCAATCTC 59.455 43.478 0.00 0.00 39.63 2.75
2658 12153 3.504863 GCAAATGCGTTGTCATCAATCT 58.495 40.909 0.00 0.00 39.63 2.40
2659 12154 3.894351 GCAAATGCGTTGTCATCAATC 57.106 42.857 0.00 0.00 39.63 2.67
2672 12167 3.698029 ACATGATTAGTCCGCAAATGC 57.302 42.857 0.00 0.00 37.78 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.