AutoCloner

Multiple sequence alignment - TraesCS3A01G494100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G494100	chr3A	100.000	2903	0	0	1	2903	720230158	720233060	0.000000e+00	5361.0
1	TraesCS3A01G494100	chr3A	92.601	2257	114	23	1	2228	720076833	720079065	0.000000e+00	3193.0
2	TraesCS3A01G494100	chr3A	86.229	2302	208	47	1	2228	719995457	719997723	0.000000e+00	2394.0
3	TraesCS3A01G494100	chr3A	90.479	1544	94	19	731	2228	720221841	720223377	0.000000e+00	1988.0
4	TraesCS3A01G494100	chr3A	88.742	1439	128	17	642	2058	719935996	719937422	0.000000e+00	1729.0
5	TraesCS3A01G494100	chr3A	87.616	541	39	19	1	536	720216438	720216955	1.150000e-168	603.0
6	TraesCS3A01G494100	chr3A	83.333	600	72	20	1	589	719935311	719935893	1.980000e-146	529.0
7	TraesCS3A01G494100	chr3A	92.386	197	9	1	2168	2364	720078926	720079116	2.850000e-70	276.0
8	TraesCS3A01G494100	chr3A	89.474	152	16	0	2228	2379	720223298	720223449	2.950000e-45	193.0
9	TraesCS3A01G494100	chr3A	93.750	80	5	0	2228	2307	720232306	720232385	1.410000e-23	121.0
10	TraesCS3A01G494100	chr3A	93.750	80	5	0	2149	2228	720232385	720232464	1.410000e-23	121.0
11	TraesCS3A01G494100	chr3A	84.746	118	13	2	2111	2228	719937426	719937538	2.360000e-21	113.0
12	TraesCS3A01G494100	chr3B	92.966	2417	118	20	1	2389	789228366	789230758	0.000000e+00	3474.0
13	TraesCS3A01G494100	chr3B	85.552	2111	176	50	1	2044	789220410	789222458	0.000000e+00	2089.0
14	TraesCS3A01G494100	chr3B	88.897	1396	117	21	642	2013	789179645	789181026	0.000000e+00	1685.0
15	TraesCS3A01G494100	chr3B	87.558	217	21	4	1	214	789177911	789178124	2.230000e-61	246.0
16	TraesCS3A01G494100	chr3B	88.276	145	15	2	2063	2206	789222447	789222590	3.850000e-39	172.0
17	TraesCS3A01G494100	chr3B	86.164	159	18	3	2228	2382	789222533	789222691	4.980000e-38	169.0
18	TraesCS3A01G494100	chr3B	86.525	141	19	0	2262	2402	789181101	789181241	3.870000e-34	156.0
19	TraesCS3A01G494100	chr3B	87.302	126	12	1	2521	2646	789230821	789230942	1.080000e-29	141.0
20	TraesCS3A01G494100	chr3B	95.833	72	3	0	2405	2476	789230749	789230820	1.830000e-22	117.0
21	TraesCS3A01G494100	chr3B	85.593	118	7	5	2111	2228	789181039	789181146	6.570000e-22	115.0
22	TraesCS3A01G494100	chr3D	94.243	2206	107	10	1	2195	590307693	590309889	0.000000e+00	3352.0
23	TraesCS3A01G494100	chr3D	88.951	1421	119	21	662	2058	590204070	590205476	0.000000e+00	1720.0
24	TraesCS3A01G494100	chr3D	85.408	932	122	8	597	1519	588977705	588976779	0.000000e+00	955.0
25	TraesCS3A01G494100	chr3D	90.869	679	48	9	2228	2903	590309843	590310510	0.000000e+00	898.0
26	TraesCS3A01G494100	chr3D	82.017	595	82	17	6	589	590203365	590203945	1.560000e-132	483.0
27	TraesCS3A01G494100	chr3D	81.126	604	81	22	1	589	590240300	590240885	1.230000e-123	453.0
28	TraesCS3A01G494100	chr3D	86.709	316	27	1	1694	1994	590241624	590241939	1.290000e-88	337.0
29	TraesCS3A01G494100	chr3D	87.571	177	22	0	2228	2404	590205518	590205694	3.790000e-49	206.0
30	TraesCS3A01G494100	chr3D	79.859	283	34	11	2401	2683	590242179	590242438	4.940000e-43	185.0
31	TraesCS3A01G494100	chr3D	79.859	283	34	11	2401	2683	603060516	603060775	4.940000e-43	185.0
32	TraesCS3A01G494100	chr3D	93.220	118	8	0	2111	2228	590205480	590205597	1.070000e-39	174.0
33	TraesCS3A01G494100	chr5D	84.416	77	7	5	2816	2890	63783844	63783917	1.440000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G494100	chr3A	720230158	720233060	2902	False	1867.666667	5361	95.833333	1	2903	3	chr3A.!!$F6	2902
1	TraesCS3A01G494100	chr3A	719995457	719997723	2266	False	2394.000000	2394	86.229000	1	2228	1	chr3A.!!$F1	2227
2	TraesCS3A01G494100	chr3A	720076833	720079116	2283	False	1734.500000	3193	92.493500	1	2364	2	chr3A.!!$F4	2363
3	TraesCS3A01G494100	chr3A	720221841	720223449	1608	False	1090.500000	1988	89.976500	731	2379	2	chr3A.!!$F5	1648
4	TraesCS3A01G494100	chr3A	719935311	719937538	2227	False	790.333333	1729	85.607000	1	2228	3	chr3A.!!$F3	2227
5	TraesCS3A01G494100	chr3A	720216438	720216955	517	False	603.000000	603	87.616000	1	536	1	chr3A.!!$F2	535
6	TraesCS3A01G494100	chr3B	789228366	789230942	2576	False	1244.000000	3474	92.033667	1	2646	3	chr3B.!!$F3	2645
7	TraesCS3A01G494100	chr3B	789220410	789222691	2281	False	810.000000	2089	86.664000	1	2382	3	chr3B.!!$F2	2381
8	TraesCS3A01G494100	chr3B	789177911	789181241	3330	False	550.500000	1685	87.143250	1	2402	4	chr3B.!!$F1	2401
9	TraesCS3A01G494100	chr3D	590307693	590310510	2817	False	2125.000000	3352	92.556000	1	2903	2	chr3D.!!$F4	2902
10	TraesCS3A01G494100	chr3D	588976779	588977705	926	True	955.000000	955	85.408000	597	1519	1	chr3D.!!$R1	922
11	TraesCS3A01G494100	chr3D	590203365	590205694	2329	False	645.750000	1720	87.939750	6	2404	4	chr3D.!!$F2	2398
12	TraesCS3A01G494100	chr3D	590240300	590242438	2138	False	325.000000	453	82.564667	1	2683	3	chr3D.!!$F3	2682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
655	1798	4.13829	TGTGACGTTGTACATCCCAAAAT	58.862	39.13	0.0	0.0	0.0	1.82	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2138	3372	0.950836	CAGTGGAAAACGATGGTGCA	59.049	50.0	0.0	0.0	0.0	4.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	5.215252	TCGAGATTGGAAGACAAGAGTTT	57.785	39.130	0.00	0.00	43.48	2.66
142	143	6.597672	CCTGTCTACAAGGTAAATGCATTGTA	59.402	38.462	13.82	10.18	42.32	2.41
144	145	9.325198	CTGTCTACAAGGTAAATGCATTGTATA	57.675	33.333	13.82	0.00	42.26	1.47
145	146	9.325198	TGTCTACAAGGTAAATGCATTGTATAG	57.675	33.333	13.82	8.37	42.26	1.31
417	1497	8.727100	TCTCCATTATATTATCGATGCCCTAT	57.273	34.615	8.54	2.61	0.00	2.57
591	1682	7.275560	ACTCTTGATAAACATTTATTTTGCGCC	59.724	33.333	4.18	0.00	33.72	6.53
645	1788	7.440541	TTGTATTCGATATGTGACGTTGTAC	57.559	36.000	0.00	0.00	0.00	2.90
655	1798	4.138290	TGTGACGTTGTACATCCCAAAAT	58.862	39.130	0.00	0.00	0.00	1.82
656	1799	4.580995	TGTGACGTTGTACATCCCAAAATT	59.419	37.500	0.00	0.00	0.00	1.82
657	1800	5.763698	TGTGACGTTGTACATCCCAAAATTA	59.236	36.000	0.00	0.00	0.00	1.40
698	1844	7.302524	GCATGTGATTCATTTTCTGCAATTTT	58.697	30.769	0.00	0.00	34.09	1.82
1002	2149	4.318760	CGATCGTGTTTTGGCCATACTATG	60.319	45.833	6.09	5.26	0.00	2.23
1017	2164	6.367422	GCCATACTATGAAATGCACTCTCTAC	59.633	42.308	0.00	0.00	0.00	2.59
1020	2167	5.911752	ACTATGAAATGCACTCTCTACTGG	58.088	41.667	0.00	0.00	0.00	4.00
1068	2215	7.961351	TGGTTGATTGGAATAAAAGATGTGTT	58.039	30.769	0.00	0.00	0.00	3.32
1119	2266	0.108424	ATCTCCACAAGCACTCTCGC	60.108	55.000	0.00	0.00	0.00	5.03
1225	2372	6.813152	GCTAGCAAAAATTTTCAGCTCCAATA	59.187	34.615	25.19	12.74	34.61	1.90
1236	2383	5.296151	TCAGCTCCAATAATACTCAAGGG	57.704	43.478	0.00	0.00	0.00	3.95
1821	2991	7.472945	GCATACTTCAGCCTAAGGGTATCTAAA	60.473	40.741	0.00	0.00	34.45	1.85
1846	3046	8.423906	AGTAGATGAATCGGGTAATAATGACT	57.576	34.615	0.00	0.00	0.00	3.41
1869	3069	3.146618	ACCGTCTGCAGTAATAACGAG	57.853	47.619	22.20	15.45	35.45	4.18
1920	3136	5.645067	CAGATAGTTGATCACCTTGCTTCAA	59.355	40.000	0.00	0.00	36.98	2.69
2063	3295	2.280592	GTTGTTCGGTCCAGCGGT	60.281	61.111	0.00	0.00	0.00	5.68
2064	3296	1.005867	GTTGTTCGGTCCAGCGGTA	60.006	57.895	0.00	0.00	0.00	4.02
2065	3297	0.390735	GTTGTTCGGTCCAGCGGTAT	60.391	55.000	0.00	0.00	0.00	2.73
2066	3298	0.108520	TTGTTCGGTCCAGCGGTATC	60.109	55.000	0.00	0.00	0.00	2.24
2067	3299	0.968901	TGTTCGGTCCAGCGGTATCT	60.969	55.000	0.00	0.00	0.00	1.98
2069	3301	0.968901	TTCGGTCCAGCGGTATCTGT	60.969	55.000	0.00	0.00	32.32	3.41
2070	3302	1.226974	CGGTCCAGCGGTATCTGTG	60.227	63.158	0.00	0.00	32.32	3.66
2071	3303	1.898154	GGTCCAGCGGTATCTGTGT	59.102	57.895	0.00	0.00	32.32	3.72
2082	3314	2.168521	GGTATCTGTGTAAGCTCTGCCA	59.831	50.000	0.00	0.00	0.00	4.92
2138	3372	4.389374	ACTGTATGTAGCTTTTGTGCACT	58.611	39.130	19.41	0.00	34.99	4.40
2388	3630	8.250332	TCCTGAAAGTTAATTCCATTTACATGC	58.750	33.333	0.00	0.00	0.00	4.06
2389	3631	7.492344	CCTGAAAGTTAATTCCATTTACATGCC	59.508	37.037	0.00	0.00	0.00	4.40
2390	3632	7.901029	TGAAAGTTAATTCCATTTACATGCCA	58.099	30.769	0.00	0.00	0.00	4.92
2391	3633	8.034215	TGAAAGTTAATTCCATTTACATGCCAG	58.966	33.333	0.00	0.00	0.00	4.85
2392	3634	6.469782	AGTTAATTCCATTTACATGCCAGG	57.530	37.500	0.00	0.00	0.00	4.45
2393	3635	3.825143	AATTCCATTTACATGCCAGGC	57.175	42.857	3.66	3.66	0.00	4.85
2394	3636	2.530460	TTCCATTTACATGCCAGGCT	57.470	45.000	14.15	0.00	0.00	4.58
2395	3637	3.660970	TTCCATTTACATGCCAGGCTA	57.339	42.857	14.15	0.00	0.00	3.93
2396	3638	3.660970	TCCATTTACATGCCAGGCTAA	57.339	42.857	14.15	0.00	0.00	3.09
2397	3639	3.287222	TCCATTTACATGCCAGGCTAAC	58.713	45.455	14.15	0.00	0.00	2.34
2398	3640	3.053693	TCCATTTACATGCCAGGCTAACT	60.054	43.478	14.15	0.00	0.00	2.24
2399	3641	4.165180	TCCATTTACATGCCAGGCTAACTA	59.835	41.667	14.15	0.00	0.00	2.24
2400	3642	4.516698	CCATTTACATGCCAGGCTAACTAG	59.483	45.833	14.15	0.00	0.00	2.57
2401	3643	5.368145	CATTTACATGCCAGGCTAACTAGA	58.632	41.667	14.15	0.00	0.00	2.43
2402	3644	5.429681	TTTACATGCCAGGCTAACTAGAA	57.570	39.130	14.15	0.00	0.00	2.10
2403	3645	5.630415	TTACATGCCAGGCTAACTAGAAT	57.370	39.130	14.15	0.00	0.00	2.40
2404	3646	6.740944	TTACATGCCAGGCTAACTAGAATA	57.259	37.500	14.15	0.00	0.00	1.75
2405	3647	5.832539	ACATGCCAGGCTAACTAGAATAT	57.167	39.130	14.15	0.00	0.00	1.28
2406	3648	6.192970	ACATGCCAGGCTAACTAGAATATT	57.807	37.500	14.15	0.00	0.00	1.28
2489	3789	2.683211	AGGCCAACATGAAGGAGTTT	57.317	45.000	5.01	0.00	0.00	2.66
2549	3849	7.671302	AGTTCATTGACTGTATTACTCACTGT	58.329	34.615	0.00	0.00	0.00	3.55
2715	4015	3.981308	GCTAAAGGCAGGTGCGAA	58.019	55.556	0.00	0.00	43.26	4.70
2716	4016	2.482326	GCTAAAGGCAGGTGCGAAT	58.518	52.632	0.00	0.00	43.26	3.34
2717	4017	0.099436	GCTAAAGGCAGGTGCGAATG	59.901	55.000	0.00	0.00	43.26	2.67
2719	4019	0.679640	TAAAGGCAGGTGCGAATGGG	60.680	55.000	0.00	0.00	43.26	4.00
2723	4023	4.776322	CAGGTGCGAATGGGCCGA	62.776	66.667	0.00	0.00	0.00	5.54
2724	4024	4.778143	AGGTGCGAATGGGCCGAC	62.778	66.667	0.00	0.00	0.00	4.79
2735	4035	3.202706	GGCCGACCCATTCTTCGC	61.203	66.667	0.00	0.00	33.78	4.70
2736	4036	3.564027	GCCGACCCATTCTTCGCG	61.564	66.667	0.00	0.00	33.78	5.87
2737	4037	3.564027	CCGACCCATTCTTCGCGC	61.564	66.667	0.00	0.00	33.78	6.86
2738	4038	2.813474	CGACCCATTCTTCGCGCA	60.813	61.111	8.75	0.00	0.00	6.09
2824	4124	8.807948	TGCATTATTTTAGGGGCTAGATATTC	57.192	34.615	0.00	0.00	0.00	1.75
2831	4131	7.881912	TTTAGGGGCTAGATATTCATAACCA	57.118	36.000	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
230	1293	4.980573	AGATTGGGCTACTGTAAACAACA	58.019	39.130	0.00	0.00	36.42	3.33
589	1680	3.042871	TCCATTTCAGTGCATTTTGGC	57.957	42.857	0.00	0.00	0.00	4.52
628	1755	3.734231	GGGATGTACAACGTCACATATCG	59.266	47.826	0.00	0.00	37.48	2.92
638	1781	6.737254	AGACTAATTTTGGGATGTACAACG	57.263	37.500	0.00	0.00	0.00	4.10
645	1788	5.069516	CCATGGGAAGACTAATTTTGGGATG	59.930	44.000	2.85	0.00	0.00	3.51
655	1798	2.204463	TGCCATCCATGGGAAGACTAA	58.796	47.619	13.02	0.00	45.79	2.24
656	1799	1.891933	TGCCATCCATGGGAAGACTA	58.108	50.000	13.02	0.00	45.79	2.59
657	1800	2.713967	TGCCATCCATGGGAAGACT	58.286	52.632	13.02	0.00	45.79	3.24
1002	2149	2.284190	GCCCAGTAGAGAGTGCATTTC	58.716	52.381	0.00	0.00	0.00	2.17
1017	2164	0.107703	TTCGGCTAACATCTGCCCAG	60.108	55.000	0.00	0.00	45.90	4.45
1020	2167	3.153024	TGTTCGGCTAACATCTGCC	57.847	52.632	0.00	0.00	43.22	4.85
1119	2266	0.659427	CCCTGTGTATGATGCGCAAG	59.341	55.000	17.11	3.95	43.44	4.01
1225	2372	4.566488	CCTCTTTGTGCTCCCTTGAGTATT	60.566	45.833	0.00	0.00	40.95	1.89
1236	2383	0.890996	CCACCACCCTCTTTGTGCTC	60.891	60.000	0.00	0.00	32.30	4.26
1299	2446	7.153985	TCAAATTTTAAAGGTTGATCAGCTGG	58.846	34.615	15.13	0.00	31.79	4.85
1602	2772	4.044571	TCAAAACATCTTCCTCCTTCCCAT	59.955	41.667	0.00	0.00	0.00	4.00
1821	2991	8.423906	AGTCATTATTACCCGATTCATCTACT	57.576	34.615	0.00	0.00	0.00	2.57
1846	3046	5.058149	TCGTTATTACTGCAGACGGTTAA	57.942	39.130	23.35	8.52	36.55	2.01
1869	3069	1.134371	GGCTCCTCAGTGATGGTTACC	60.134	57.143	0.00	0.00	0.00	2.85
1920	3136	6.377996	TGATTGCTAGCACTTCCATTAACAAT	59.622	34.615	19.17	2.84	0.00	2.71
2058	3290	2.099921	CAGAGCTTACACAGATACCGCT	59.900	50.000	0.00	0.00	0.00	5.52
2059	3291	2.464865	CAGAGCTTACACAGATACCGC	58.535	52.381	0.00	0.00	0.00	5.68
2060	3292	2.464865	GCAGAGCTTACACAGATACCG	58.535	52.381	0.00	0.00	0.00	4.02
2061	3293	2.168521	TGGCAGAGCTTACACAGATACC	59.831	50.000	0.00	0.00	0.00	2.73
2063	3295	3.099905	ACTGGCAGAGCTTACACAGATA	58.900	45.455	23.66	0.00	0.00	1.98
2064	3296	1.905215	ACTGGCAGAGCTTACACAGAT	59.095	47.619	23.66	0.00	0.00	2.90
2065	3297	1.342074	ACTGGCAGAGCTTACACAGA	58.658	50.000	23.66	0.00	0.00	3.41
2066	3298	3.193263	CATACTGGCAGAGCTTACACAG	58.807	50.000	23.66	7.58	0.00	3.66
2067	3299	2.677902	GCATACTGGCAGAGCTTACACA	60.678	50.000	23.66	0.00	0.00	3.72
2069	3301	1.554617	TGCATACTGGCAGAGCTTACA	59.445	47.619	23.66	8.45	39.25	2.41
2070	3302	2.315925	TGCATACTGGCAGAGCTTAC	57.684	50.000	23.66	5.82	39.25	2.34
2082	3314	6.765036	GCATATCAATACAGCCTATGCATACT	59.235	38.462	1.16	0.00	42.55	2.12
2138	3372	0.950836	CAGTGGAAAACGATGGTGCA	59.049	50.000	0.00	0.00	0.00	4.57
2289	3531	3.688185	CAGTTAATGCATCTGCTGTGAGT	59.312	43.478	0.00	0.00	42.66	3.41
2292	3534	4.690184	TTCAGTTAATGCATCTGCTGTG	57.310	40.909	17.86	6.03	42.66	3.66
2382	3624	6.935240	ATATTCTAGTTAGCCTGGCATGTA	57.065	37.500	22.65	1.16	0.00	2.29
2383	3625	5.832539	ATATTCTAGTTAGCCTGGCATGT	57.167	39.130	22.65	2.30	0.00	3.21
2384	3626	6.233434	TCAATATTCTAGTTAGCCTGGCATG	58.767	40.000	22.65	4.01	0.00	4.06
2385	3627	6.439636	TCAATATTCTAGTTAGCCTGGCAT	57.560	37.500	22.65	8.63	0.00	4.40
2386	3628	5.887214	TCAATATTCTAGTTAGCCTGGCA	57.113	39.130	22.65	3.92	0.00	4.92
2387	3629	7.011857	GCATATCAATATTCTAGTTAGCCTGGC	59.988	40.741	11.65	11.65	0.00	4.85
2388	3630	8.263640	AGCATATCAATATTCTAGTTAGCCTGG	58.736	37.037	0.00	0.00	0.00	4.45
2389	3631	9.664332	AAGCATATCAATATTCTAGTTAGCCTG	57.336	33.333	0.00	0.00	0.00	4.85
2390	3632	9.664332	CAAGCATATCAATATTCTAGTTAGCCT	57.336	33.333	0.00	0.00	0.00	4.58
2391	3633	9.442047	ACAAGCATATCAATATTCTAGTTAGCC	57.558	33.333	0.00	0.00	0.00	3.93
2483	3783	5.522460	GCTAAACACCAAAAGGAAAAACTCC	59.478	40.000	0.00	0.00	45.81	3.85
2489	3789	3.181470	GCAGGCTAAACACCAAAAGGAAA	60.181	43.478	0.00	0.00	0.00	3.13
2677	3977	2.798283	CAAACTGCCTTGCACAATTCAG	59.202	45.455	0.00	9.22	33.79	3.02
2701	4001	1.978617	CCCATTCGCACCTGCCTTT	60.979	57.895	0.00	0.00	37.91	3.11
2719	4019	3.564027	CGCGAAGAATGGGTCGGC	61.564	66.667	0.00	0.00	37.73	5.54
2722	4022	1.425428	CTTGCGCGAAGAATGGGTC	59.575	57.895	12.10	0.00	32.82	4.46
2723	4023	2.690778	GCTTGCGCGAAGAATGGGT	61.691	57.895	12.10	0.00	32.82	4.51
2724	4024	2.100991	GCTTGCGCGAAGAATGGG	59.899	61.111	12.10	0.00	32.82	4.00
2725	4025	1.226211	CAGCTTGCGCGAAGAATGG	60.226	57.895	12.10	0.00	42.32	3.16
2726	4026	0.110056	AACAGCTTGCGCGAAGAATG	60.110	50.000	12.10	14.53	42.32	2.67
2727	4027	0.593128	AAACAGCTTGCGCGAAGAAT	59.407	45.000	12.10	0.64	42.32	2.40
2728	4028	0.380378	AAAACAGCTTGCGCGAAGAA	59.620	45.000	12.10	0.00	42.32	2.52
2729	4029	0.380378	AAAAACAGCTTGCGCGAAGA	59.620	45.000	12.10	0.00	42.32	2.87
2731	4031	0.380378	AGAAAAACAGCTTGCGCGAA	59.620	45.000	12.10	0.00	42.32	4.70
2733	4033	0.772341	GAAGAAAAACAGCTTGCGCG	59.228	50.000	0.00	0.00	42.32	6.86
2734	4034	2.125461	AGAAGAAAAACAGCTTGCGC	57.875	45.000	0.00	0.00	0.00	6.09
2735	4035	3.438360	ACAAGAAGAAAAACAGCTTGCG	58.562	40.909	0.00	0.00	39.51	4.85
2736	4036	5.784750	AAACAAGAAGAAAAACAGCTTGC	57.215	34.783	0.00	0.00	39.51	4.01
2737	4037	7.543520	AGAGAAAACAAGAAGAAAAACAGCTTG	59.456	33.333	0.00	0.00	41.15	4.01
2738	4038	7.606349	AGAGAAAACAAGAAGAAAAACAGCTT	58.394	30.769	0.00	0.00	0.00	3.74
2805	4105	8.900802	TGGTTATGAATATCTAGCCCCTAAAAT	58.099	33.333	0.00	0.00	0.00	1.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.