Multiple sequence alignment - TraesCS3A01G493800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G493800 chr3A 100.000 5373 0 0 1 5373 720074369 720079741 0.000000e+00 9923.0
1 TraesCS3A01G493800 chr3A 92.965 2573 127 23 2148 4697 720229844 720232385 0.000000e+00 3699.0
2 TraesCS3A01G493800 chr3A 84.968 2681 258 72 2159 4748 719995154 719997780 0.000000e+00 2584.0
3 TraesCS3A01G493800 chr3A 88.930 1608 104 29 3199 4748 720221843 720223434 0.000000e+00 1916.0
4 TraesCS3A01G493800 chr3A 88.818 1413 119 14 3129 4519 719936017 719937412 0.000000e+00 1698.0
5 TraesCS3A01G493800 chr3A 84.722 1440 146 30 457 1864 720227703 720229100 0.000000e+00 1373.0
6 TraesCS3A01G493800 chr3A 87.140 1182 123 10 885 2049 719991668 719992837 0.000000e+00 1314.0
7 TraesCS3A01G493800 chr3A 90.289 865 51 16 2148 3010 720216122 720216955 0.000000e+00 1101.0
8 TraesCS3A01G493800 chr3A 83.784 1184 159 24 963 2129 719932980 719934147 0.000000e+00 1092.0
9 TraesCS3A01G493800 chr3A 86.700 1000 96 16 885 1857 720214336 720215325 0.000000e+00 1075.0
10 TraesCS3A01G493800 chr3A 83.676 925 105 28 2158 3068 719935005 719935897 0.000000e+00 830.0
11 TraesCS3A01G493800 chr3A 89.189 296 26 6 4 297 273756641 273756350 1.100000e-96 364.0
12 TraesCS3A01G493800 chr3A 88.591 298 33 1 1 297 609297700 609297997 1.420000e-95 361.0
13 TraesCS3A01G493800 chr3A 89.630 270 10 4 456 709 720213234 720213501 1.440000e-85 327.0
14 TraesCS3A01G493800 chr3A 92.386 197 9 1 4558 4748 720232325 720232521 5.300000e-70 276.0
15 TraesCS3A01G493800 chr3A 83.851 161 15 7 1908 2058 720229105 720229264 5.610000e-30 143.0
16 TraesCS3A01G493800 chr3A 90.476 105 4 1 4655 4753 719937496 719937600 3.380000e-27 134.0
17 TraesCS3A01G493800 chr3A 94.872 78 4 0 3050 3127 720216956 720217033 7.310000e-24 122.0
18 TraesCS3A01G493800 chr3A 93.443 61 4 0 4637 4697 720078926 720078986 2.060000e-14 91.6
19 TraesCS3A01G493800 chr3A 93.443 61 4 0 4558 4618 720079005 720079065 2.060000e-14 91.6
20 TraesCS3A01G493800 chr3A 100.000 48 0 0 4558 4605 720223317 720223364 7.410000e-14 89.8
21 TraesCS3A01G493800 chr3A 95.349 43 2 0 4576 4618 719937496 719937538 9.660000e-08 69.4
22 TraesCS3A01G493800 chr3D 92.341 3917 201 41 898 4748 590306094 590309977 0.000000e+00 5480.0
23 TraesCS3A01G493800 chr3D 88.551 1415 119 24 3129 4519 590204071 590205466 0.000000e+00 1676.0
24 TraesCS3A01G493800 chr3D 82.612 1202 160 27 885 2071 590200509 590201676 0.000000e+00 1016.0
25 TraesCS3A01G493800 chr3D 85.376 930 121 6 3072 3989 588977705 588976779 0.000000e+00 950.0
26 TraesCS3A01G493800 chr3D 81.044 1034 151 27 885 1890 590238347 590239363 0.000000e+00 782.0
27 TraesCS3A01G493800 chr3D 82.378 925 120 26 2158 3068 590203054 590203949 0.000000e+00 765.0
28 TraesCS3A01G493800 chr3D 82.239 929 113 34 2158 3068 590239995 590240889 0.000000e+00 754.0
29 TraesCS3A01G493800 chr3D 82.634 524 36 24 4618 5129 590205518 590205998 3.870000e-111 412.0
30 TraesCS3A01G493800 chr3D 86.224 392 26 13 458 834 590305704 590306082 3.010000e-107 399.0
31 TraesCS3A01G493800 chr3D 86.392 316 28 1 4164 4464 590241624 590241939 1.120000e-86 331.0
32 TraesCS3A01G493800 chr3D 92.949 156 11 0 297 452 590305410 590305565 1.510000e-55 228.0
33 TraesCS3A01G493800 chr3D 91.083 157 10 1 5217 5373 590220194 590220346 5.450000e-50 209.0
34 TraesCS3A01G493800 chr3D 80.769 208 20 8 1927 2129 590239367 590239559 1.560000e-30 145.0
35 TraesCS3A01G493800 chr3D 94.253 87 4 1 5137 5222 590219040 590219126 1.210000e-26 132.0
36 TraesCS3A01G493800 chr3D 90.164 61 6 0 4558 4618 590205537 590205597 4.460000e-11 80.5
37 TraesCS3A01G493800 chr3B 92.876 2709 130 25 2022 4697 789227915 789230593 0.000000e+00 3875.0
38 TraesCS3A01G493800 chr3B 86.122 2349 199 49 2158 4436 789220102 789222393 0.000000e+00 2414.0
39 TraesCS3A01G493800 chr3B 89.413 1379 104 21 3129 4483 789179666 789181026 0.000000e+00 1700.0
40 TraesCS3A01G493800 chr3B 85.216 1576 143 44 457 1969 789226376 789227924 0.000000e+00 1537.0
41 TraesCS3A01G493800 chr3B 85.739 1171 135 12 885 2039 789217810 789218964 0.000000e+00 1208.0
42 TraesCS3A01G493800 chr3B 84.175 1169 160 16 968 2129 789176017 789177167 0.000000e+00 1110.0
43 TraesCS3A01G493800 chr3B 91.275 447 30 5 4930 5371 789181348 789181790 7.700000e-168 601.0
44 TraesCS3A01G493800 chr3B 86.948 521 57 8 2158 2672 789177605 789178120 4.670000e-160 575.0
45 TraesCS3A01G493800 chr3B 79.241 395 54 19 2682 3068 789179170 789179544 3.210000e-62 250.0
46 TraesCS3A01G493800 chr3B 94.304 158 7 2 297 452 789226091 789226248 1.930000e-59 241.0
47 TraesCS3A01G493800 chr3B 88.557 201 13 2 4558 4748 789230533 789230733 9.000000e-58 235.0
48 TraesCS3A01G493800 chr3B 83.077 260 19 10 4652 4900 789181101 789181346 4.220000e-51 213.0
49 TraesCS3A01G493800 chr3B 85.816 141 10 3 4618 4748 789222533 789222673 2.020000e-29 141.0
50 TraesCS3A01G493800 chr3B 89.011 91 9 1 2044 2134 789219062 789219151 1.580000e-20 111.0
51 TraesCS3A01G493800 chr3B 95.556 45 2 0 4574 4618 789181102 789181146 7.460000e-09 73.1
52 TraesCS3A01G493800 chr3B 100.000 29 0 0 5345 5373 789181790 789181818 3.000000e-03 54.7
53 TraesCS3A01G493800 chr7A 91.186 295 24 2 4 297 451329298 451329005 3.010000e-107 399.0
54 TraesCS3A01G493800 chr7A 89.667 300 29 2 4 302 424901108 424901406 1.090000e-101 381.0
55 TraesCS3A01G493800 chr7A 89.492 295 28 3 4 297 451320199 451319907 2.360000e-98 370.0
56 TraesCS3A01G493800 chr4A 89.831 295 29 1 4 297 331286890 331286596 1.410000e-100 377.0
57 TraesCS3A01G493800 chr4A 88.629 299 30 4 1 297 234959045 234959341 1.420000e-95 361.0
58 TraesCS3A01G493800 chr1A 89.347 291 28 3 4 292 515471191 515470902 3.960000e-96 363.0
59 TraesCS3A01G493800 chr1A 89.153 295 27 5 4 297 579404879 579404589 3.960000e-96 363.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G493800 chr3A 720074369 720079741 5372 False 3368.733333 9923 95.628667 1 5373 3 chr3A.!!$F4 5372
1 TraesCS3A01G493800 chr3A 719991668 719997780 6112 False 1949.000000 2584 86.054000 885 4748 2 chr3A.!!$F3 3863
2 TraesCS3A01G493800 chr3A 720227703 720232521 4818 False 1372.750000 3699 88.481000 457 4748 4 chr3A.!!$F7 4291
3 TraesCS3A01G493800 chr3A 720221843 720223434 1591 False 1002.900000 1916 94.465000 3199 4748 2 chr3A.!!$F6 1549
4 TraesCS3A01G493800 chr3A 719932980 719937600 4620 False 764.680000 1698 88.420600 963 4753 5 chr3A.!!$F2 3790
5 TraesCS3A01G493800 chr3A 720213234 720217033 3799 False 656.250000 1101 90.372750 456 3127 4 chr3A.!!$F5 2671
6 TraesCS3A01G493800 chr3D 590305410 590309977 4567 False 2035.666667 5480 90.504667 297 4748 3 chr3D.!!$F4 4451
7 TraesCS3A01G493800 chr3D 588976779 588977705 926 True 950.000000 950 85.376000 3072 3989 1 chr3D.!!$R1 917
8 TraesCS3A01G493800 chr3D 590200509 590205998 5489 False 789.900000 1676 85.267800 885 5129 5 chr3D.!!$F1 4244
9 TraesCS3A01G493800 chr3D 590238347 590241939 3592 False 503.000000 782 82.611000 885 4464 4 chr3D.!!$F3 3579
10 TraesCS3A01G493800 chr3B 789217810 789230733 12923 False 1220.250000 3875 88.455125 297 4748 8 chr3B.!!$F2 4451
11 TraesCS3A01G493800 chr3B 789176017 789181818 5801 False 572.100000 1700 88.710625 968 5373 8 chr3B.!!$F1 4405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.034283 TGCCATGCAACCTCATAGCA 60.034 50.000 0.00 0.00 38.42 3.49 F
1134 10055 1.087771 GCGGCAACAGCGGTAACTAT 61.088 55.000 0.00 0.00 0.00 2.12 F
1201 10122 0.540365 CCTCCCAAAGAAGGCAGCAA 60.540 55.000 0.00 0.00 0.00 3.91 F
1707 10649 0.908910 TCAGGCACATGGACGGTAAT 59.091 50.000 0.00 0.00 0.00 1.89 F
2141 11866 1.496403 CGATGCATGCAGATCACGCT 61.496 55.000 26.69 6.16 34.49 5.07 F
2221 15081 1.828331 GACGCAACTCACACCGGAAC 61.828 60.000 9.46 0.00 0.00 3.62 F
2673 15549 2.159435 ACGATTGCCTAAAAACATCCGC 60.159 45.455 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 10097 0.038310 CCTTCTTTGGGAGGGTGGAC 59.962 60.000 0.00 0.00 36.56 4.02 R
2094 11196 2.572290 ACGGAAAGACAAAGGGAGTTG 58.428 47.619 0.00 0.00 34.52 3.16 R
3197 17210 1.713647 TCTGGTAATTGGCCCTGGAAA 59.286 47.619 0.00 0.00 0.00 3.13 R
3484 17498 1.535028 TGTTTGGCTAACATCTGCACG 59.465 47.619 10.43 0.00 41.73 5.34 R
4115 18147 1.069823 CGCTGCATGGATCTCCTTAGT 59.930 52.381 0.00 0.00 36.82 2.24 R
4319 18366 2.159282 AGTCGTTATTACTGCAGACGGG 60.159 50.000 23.35 2.69 34.72 5.28 R
4509 18575 0.870307 CGCAGGATACACCGCTACAC 60.870 60.000 0.00 0.00 44.74 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.745018 ATTCAGAATTAGAAGAATTTCAGGACA 57.255 29.630 0.00 0.00 35.70 4.02
61 62 9.170734 TCAGAATTAGAAGAATTTCAGGACATG 57.829 33.333 0.00 0.00 35.70 3.21
62 63 9.170734 CAGAATTAGAAGAATTTCAGGACATGA 57.829 33.333 0.00 0.00 35.70 3.07
63 64 9.171877 AGAATTAGAAGAATTTCAGGACATGAC 57.828 33.333 0.00 0.00 37.77 3.06
64 65 8.868522 AATTAGAAGAATTTCAGGACATGACA 57.131 30.769 0.00 0.00 37.77 3.58
65 66 7.912056 TTAGAAGAATTTCAGGACATGACAG 57.088 36.000 0.00 0.00 37.77 3.51
66 67 6.119240 AGAAGAATTTCAGGACATGACAGA 57.881 37.500 0.00 0.00 37.77 3.41
67 68 6.537355 AGAAGAATTTCAGGACATGACAGAA 58.463 36.000 0.00 0.00 37.77 3.02
68 69 7.000472 AGAAGAATTTCAGGACATGACAGAAA 59.000 34.615 13.88 13.88 37.77 2.52
69 70 6.566197 AGAATTTCAGGACATGACAGAAAC 57.434 37.500 13.83 6.22 37.77 2.78
71 72 6.718454 AGAATTTCAGGACATGACAGAAACAT 59.282 34.615 13.83 8.58 37.77 2.71
74 75 8.585471 ATTTCAGGACATGACAGAAACATATT 57.415 30.769 13.83 0.88 37.77 1.28
75 76 7.615582 TTCAGGACATGACAGAAACATATTC 57.384 36.000 0.00 0.00 37.77 1.75
76 77 6.710278 TCAGGACATGACAGAAACATATTCA 58.290 36.000 0.00 0.00 31.12 2.57
78 79 7.281549 TCAGGACATGACAGAAACATATTCATG 59.718 37.037 0.00 8.93 45.98 3.07
79 80 7.281549 CAGGACATGACAGAAACATATTCATGA 59.718 37.037 15.05 0.00 44.19 3.07
81 82 9.276590 GGACATGACAGAAACATATTCATGATA 57.723 33.333 15.05 0.00 44.19 2.15
83 84 8.781196 ACATGACAGAAACATATTCATGATAGC 58.219 33.333 15.05 0.00 44.19 2.97
84 85 8.780249 CATGACAGAAACATATTCATGATAGCA 58.220 33.333 0.00 0.00 44.19 3.49
85 86 8.735692 TGACAGAAACATATTCATGATAGCAA 57.264 30.769 0.00 0.00 35.96 3.91
86 87 8.615211 TGACAGAAACATATTCATGATAGCAAC 58.385 33.333 0.00 0.00 35.96 4.17
87 88 8.743085 ACAGAAACATATTCATGATAGCAACT 57.257 30.769 0.00 0.00 35.96 3.16
88 89 9.182214 ACAGAAACATATTCATGATAGCAACTT 57.818 29.630 0.00 0.00 35.96 2.66
91 92 8.638685 AAACATATTCATGATAGCAACTTTGC 57.361 30.769 5.79 5.79 43.60 3.68
92 93 7.337480 ACATATTCATGATAGCAACTTTGCA 57.663 32.000 16.04 3.05 44.60 4.08
94 95 7.865889 ACATATTCATGATAGCAACTTTGCATG 59.134 33.333 16.04 10.39 44.60 4.06
95 96 7.148804 CATATTCATGATAGCAACTTTGCATGC 60.149 37.037 11.82 11.82 44.66 4.06
112 113 2.632643 GCTTGTGGCACTCATCACA 58.367 52.632 19.83 0.00 41.47 3.58
113 114 0.520404 GCTTGTGGCACTCATCACAG 59.480 55.000 19.83 4.57 43.55 3.66
118 119 2.069273 GTGGCACTCATCACAGTACAC 58.931 52.381 11.13 0.00 34.32 2.90
119 120 1.970640 TGGCACTCATCACAGTACACT 59.029 47.619 0.00 0.00 0.00 3.55
120 121 3.056821 GTGGCACTCATCACAGTACACTA 60.057 47.826 11.13 0.00 33.68 2.74
121 122 3.576550 TGGCACTCATCACAGTACACTAA 59.423 43.478 0.00 0.00 0.00 2.24
122 123 4.039852 TGGCACTCATCACAGTACACTAAA 59.960 41.667 0.00 0.00 0.00 1.85
123 124 5.178797 GGCACTCATCACAGTACACTAAAT 58.821 41.667 0.00 0.00 0.00 1.40
124 125 5.643777 GGCACTCATCACAGTACACTAAATT 59.356 40.000 0.00 0.00 0.00 1.82
125 126 6.816640 GGCACTCATCACAGTACACTAAATTA 59.183 38.462 0.00 0.00 0.00 1.40
126 127 7.201530 GGCACTCATCACAGTACACTAAATTAC 60.202 40.741 0.00 0.00 0.00 1.89
127 128 7.330946 GCACTCATCACAGTACACTAAATTACA 59.669 37.037 0.00 0.00 0.00 2.41
128 129 9.371136 CACTCATCACAGTACACTAAATTACAT 57.629 33.333 0.00 0.00 0.00 2.29
129 130 9.371136 ACTCATCACAGTACACTAAATTACATG 57.629 33.333 0.00 0.00 0.00 3.21
130 131 8.716646 TCATCACAGTACACTAAATTACATGG 57.283 34.615 0.00 0.00 0.00 3.66
131 132 8.536175 TCATCACAGTACACTAAATTACATGGA 58.464 33.333 0.00 0.00 0.00 3.41
132 133 9.161629 CATCACAGTACACTAAATTACATGGAA 57.838 33.333 0.00 0.00 0.00 3.53
133 134 9.905713 ATCACAGTACACTAAATTACATGGAAT 57.094 29.630 0.00 0.00 0.00 3.01
149 150 9.725019 TTACATGGAATAAATACTAGCATGGAG 57.275 33.333 0.00 0.00 0.00 3.86
150 151 7.749666 ACATGGAATAAATACTAGCATGGAGT 58.250 34.615 0.00 0.00 0.00 3.85
151 152 8.880244 ACATGGAATAAATACTAGCATGGAGTA 58.120 33.333 0.00 0.00 34.01 2.59
152 153 9.376075 CATGGAATAAATACTAGCATGGAGTAG 57.624 37.037 0.00 0.00 33.03 2.57
153 154 7.907389 TGGAATAAATACTAGCATGGAGTAGG 58.093 38.462 0.00 0.00 33.03 3.18
155 156 6.935240 ATAAATACTAGCATGGAGTAGGCA 57.065 37.500 0.00 0.00 38.89 4.75
156 157 5.832539 AAATACTAGCATGGAGTAGGCAT 57.167 39.130 0.00 0.00 38.89 4.40
157 158 4.815533 ATACTAGCATGGAGTAGGCATG 57.184 45.455 0.00 0.00 38.89 4.06
158 159 2.682594 ACTAGCATGGAGTAGGCATGA 58.317 47.619 0.00 0.00 38.89 3.07
159 160 3.041211 ACTAGCATGGAGTAGGCATGAA 58.959 45.455 0.00 0.00 38.89 2.57
160 161 3.455910 ACTAGCATGGAGTAGGCATGAAA 59.544 43.478 0.00 0.00 38.89 2.69
161 162 3.370840 AGCATGGAGTAGGCATGAAAA 57.629 42.857 0.00 0.00 38.89 2.29
163 164 3.635373 AGCATGGAGTAGGCATGAAAATG 59.365 43.478 0.00 0.00 38.89 2.32
165 166 4.098349 GCATGGAGTAGGCATGAAAATGAA 59.902 41.667 0.00 0.00 35.80 2.57
166 167 5.735354 GCATGGAGTAGGCATGAAAATGAAG 60.735 44.000 0.00 0.00 35.80 3.02
168 169 3.950395 GGAGTAGGCATGAAAATGAAGCT 59.050 43.478 0.00 0.00 0.00 3.74
169 170 5.126067 GGAGTAGGCATGAAAATGAAGCTA 58.874 41.667 0.00 0.00 0.00 3.32
170 171 5.590259 GGAGTAGGCATGAAAATGAAGCTAA 59.410 40.000 0.00 0.00 0.00 3.09
171 172 6.442513 AGTAGGCATGAAAATGAAGCTAAC 57.557 37.500 0.00 0.00 0.00 2.34
172 173 4.725790 AGGCATGAAAATGAAGCTAACC 57.274 40.909 0.00 0.00 0.00 2.85
173 174 4.088634 AGGCATGAAAATGAAGCTAACCA 58.911 39.130 0.00 0.00 0.00 3.67
174 175 4.713321 AGGCATGAAAATGAAGCTAACCAT 59.287 37.500 0.00 0.00 0.00 3.55
176 177 5.413499 GCATGAAAATGAAGCTAACCATGT 58.587 37.500 0.00 0.00 34.38 3.21
177 178 5.290158 GCATGAAAATGAAGCTAACCATGTG 59.710 40.000 0.00 0.00 34.38 3.21
178 179 4.808558 TGAAAATGAAGCTAACCATGTGC 58.191 39.130 0.00 0.00 0.00 4.57
179 180 3.874392 AAATGAAGCTAACCATGTGCC 57.126 42.857 0.00 0.00 0.00 5.01
180 181 2.512692 ATGAAGCTAACCATGTGCCA 57.487 45.000 0.00 0.00 0.00 4.92
181 182 2.512692 TGAAGCTAACCATGTGCCAT 57.487 45.000 0.00 0.00 0.00 4.40
182 183 2.093890 TGAAGCTAACCATGTGCCATG 58.906 47.619 7.88 7.88 0.00 3.66
183 184 0.819582 AAGCTAACCATGTGCCATGC 59.180 50.000 9.04 0.00 0.00 4.06
185 186 0.531657 GCTAACCATGTGCCATGCAA 59.468 50.000 9.04 0.00 41.47 4.08
190 191 1.252215 CCATGTGCCATGCAACCTCA 61.252 55.000 9.04 0.00 41.47 3.86
191 192 0.821517 CATGTGCCATGCAACCTCAT 59.178 50.000 0.00 0.00 41.47 2.90
193 194 1.753930 TGTGCCATGCAACCTCATAG 58.246 50.000 0.00 0.00 41.47 2.23
194 195 0.383231 GTGCCATGCAACCTCATAGC 59.617 55.000 0.00 0.00 41.47 2.97
195 196 0.034283 TGCCATGCAACCTCATAGCA 60.034 50.000 0.00 0.00 38.42 3.49
197 198 2.158638 TGCCATGCAACCTCATAGCATA 60.159 45.455 0.00 0.00 46.39 3.14
199 200 3.748083 CCATGCAACCTCATAGCATACT 58.252 45.455 0.00 0.00 46.39 2.12
202 203 4.486125 TGCAACCTCATAGCATACTTGA 57.514 40.909 0.00 0.00 32.55 3.02
203 204 4.842574 TGCAACCTCATAGCATACTTGAA 58.157 39.130 0.00 0.00 32.55 2.69
204 205 5.252547 TGCAACCTCATAGCATACTTGAAA 58.747 37.500 0.00 0.00 32.55 2.69
205 206 5.887598 TGCAACCTCATAGCATACTTGAAAT 59.112 36.000 0.00 0.00 32.55 2.17
206 207 7.053498 TGCAACCTCATAGCATACTTGAAATA 58.947 34.615 0.00 0.00 32.55 1.40
207 208 7.555914 TGCAACCTCATAGCATACTTGAAATAA 59.444 33.333 0.00 0.00 32.55 1.40
208 209 8.405531 GCAACCTCATAGCATACTTGAAATAAA 58.594 33.333 0.00 0.00 0.00 1.40
211 212 9.851686 ACCTCATAGCATACTTGAAATAAATCA 57.148 29.630 0.00 0.00 0.00 2.57
218 219 9.979578 AGCATACTTGAAATAAATCACACAAAA 57.020 25.926 0.00 0.00 0.00 2.44
223 224 9.868277 ACTTGAAATAAATCACACAAAAAGACA 57.132 25.926 0.00 0.00 0.00 3.41
231 232 8.545229 AAATCACACAAAAAGACAAAACATCA 57.455 26.923 0.00 0.00 0.00 3.07
232 233 8.721019 AATCACACAAAAAGACAAAACATCAT 57.279 26.923 0.00 0.00 0.00 2.45
235 236 7.816513 TCACACAAAAAGACAAAACATCATCAA 59.183 29.630 0.00 0.00 0.00 2.57
236 237 8.111836 CACACAAAAAGACAAAACATCATCAAG 58.888 33.333 0.00 0.00 0.00 3.02
237 238 8.034215 ACACAAAAAGACAAAACATCATCAAGA 58.966 29.630 0.00 0.00 0.00 3.02
252 253 6.275494 TCATCAAGATGCAAAATGACATGT 57.725 33.333 0.00 0.00 38.65 3.21
253 254 6.693466 TCATCAAGATGCAAAATGACATGTT 58.307 32.000 0.00 0.00 38.65 2.71
254 255 6.809689 TCATCAAGATGCAAAATGACATGTTC 59.190 34.615 0.00 0.00 38.65 3.18
255 256 6.086785 TCAAGATGCAAAATGACATGTTCA 57.913 33.333 0.00 0.00 39.11 3.18
257 258 6.588373 TCAAGATGCAAAATGACATGTTCATG 59.412 34.615 0.00 10.72 44.86 3.07
258 259 6.275494 AGATGCAAAATGACATGTTCATGA 57.725 33.333 17.96 0.00 44.86 3.07
260 261 6.588756 AGATGCAAAATGACATGTTCATGAAC 59.411 34.615 28.10 28.10 44.86 3.18
261 262 5.845103 TGCAAAATGACATGTTCATGAACT 58.155 33.333 32.57 17.55 44.86 3.01
263 264 6.201234 TGCAAAATGACATGTTCATGAACTTG 59.799 34.615 35.17 35.17 44.86 3.16
264 265 6.586751 CAAAATGACATGTTCATGAACTTGC 58.413 36.000 36.06 30.10 44.86 4.01
265 266 5.717078 AATGACATGTTCATGAACTTGCT 57.283 34.783 36.06 27.58 44.86 3.91
266 267 4.754372 TGACATGTTCATGAACTTGCTC 57.246 40.909 36.06 31.18 45.07 4.26
267 268 4.136051 TGACATGTTCATGAACTTGCTCA 58.864 39.130 36.06 32.52 45.07 4.26
269 270 5.067544 TGACATGTTCATGAACTTGCTCAAA 59.932 36.000 36.06 22.41 45.07 2.69
270 271 6.092955 ACATGTTCATGAACTTGCTCAAAT 57.907 33.333 36.06 22.29 45.07 2.32
271 272 5.924254 ACATGTTCATGAACTTGCTCAAATG 59.076 36.000 36.06 28.45 45.07 2.32
273 274 4.202131 TGTTCATGAACTTGCTCAAATGCA 60.202 37.500 32.57 10.59 41.67 3.96
284 285 5.594724 TGCTCAAATGCAAAAACTAATGC 57.405 34.783 0.00 0.00 40.29 3.56
286 287 4.451774 GCTCAAATGCAAAAACTAATGCCA 59.548 37.500 0.00 0.00 41.87 4.92
287 288 5.615325 GCTCAAATGCAAAAACTAATGCCAC 60.615 40.000 0.00 0.00 41.87 5.01
290 291 3.104843 TGCAAAAACTAATGCCACCAC 57.895 42.857 0.00 0.00 41.87 4.16
291 292 2.697751 TGCAAAAACTAATGCCACCACT 59.302 40.909 0.00 0.00 41.87 4.00
292 293 3.059166 GCAAAAACTAATGCCACCACTG 58.941 45.455 0.00 0.00 36.56 3.66
293 294 3.652274 CAAAAACTAATGCCACCACTGG 58.348 45.455 0.00 0.00 41.13 4.00
294 295 2.969821 AAACTAATGCCACCACTGGA 57.030 45.000 0.71 0.00 40.55 3.86
295 296 3.456380 AAACTAATGCCACCACTGGAT 57.544 42.857 0.71 0.00 40.55 3.41
326 8312 3.105203 CGAGTGTGTCGCAAAAATGTTT 58.895 40.909 0.00 0.00 43.03 2.83
452 8440 4.201822 GGTCTTGCGTCTACATTTCCATTC 60.202 45.833 0.00 0.00 0.00 2.67
453 8441 3.938963 TCTTGCGTCTACATTTCCATTCC 59.061 43.478 0.00 0.00 0.00 3.01
488 8610 4.034258 GTCGACGCAGACCCACGA 62.034 66.667 0.00 0.00 35.22 4.35
494 8616 3.386237 GCAGACCCACGAGAGCCT 61.386 66.667 0.00 0.00 0.00 4.58
496 8618 2.010582 GCAGACCCACGAGAGCCTAG 62.011 65.000 0.00 0.00 0.00 3.02
538 8669 2.745492 GACGGACGGGAGACTCGT 60.745 66.667 0.00 0.00 44.03 4.18
550 8685 1.663702 GACTCGTGGTGGGTCAACG 60.664 63.158 0.00 0.00 0.00 4.10
834 9708 2.224354 CCACGGTTACTACAACTTGGGT 60.224 50.000 0.00 0.00 0.00 4.51
1072 9987 1.436179 TATCCTCCCCCTCCTCCTCG 61.436 65.000 0.00 0.00 0.00 4.63
1134 10055 1.087771 GCGGCAACAGCGGTAACTAT 61.088 55.000 0.00 0.00 0.00 2.12
1153 10074 9.542462 GTAACTATGAATCAAATAGCACCTACA 57.458 33.333 0.00 0.00 31.89 2.74
1176 10097 1.079543 CAACCTCAGGCACCTCTCG 60.080 63.158 0.00 0.00 0.00 4.04
1201 10122 0.540365 CCTCCCAAAGAAGGCAGCAA 60.540 55.000 0.00 0.00 0.00 3.91
1283 10213 4.753662 ACTCTGCCGCGGGGACTA 62.754 66.667 29.38 6.54 34.06 2.59
1445 10375 4.023622 CACCACCGTCAATGACAAAATACA 60.024 41.667 14.24 0.00 32.09 2.29
1456 10386 4.782156 TGACAAAATACACGTCATTGCTG 58.218 39.130 0.00 0.00 34.83 4.41
1457 10387 4.274705 TGACAAAATACACGTCATTGCTGT 59.725 37.500 0.00 0.00 34.83 4.40
1691 10633 3.248266 CTTACCCCTCGTTAACGTTCAG 58.752 50.000 25.98 16.49 40.80 3.02
1707 10649 0.908910 TCAGGCACATGGACGGTAAT 59.091 50.000 0.00 0.00 0.00 1.89
1862 10804 4.016706 AGTGTACCCGCACCTGCC 62.017 66.667 0.00 0.00 40.04 4.85
1898 10858 2.983030 GGTTGCGGCACCATCACA 60.983 61.111 0.05 0.00 36.73 3.58
2007 10977 7.985184 ACCACGCTTCAGTTAGATTCATTAATA 59.015 33.333 0.00 0.00 0.00 0.98
2141 11866 1.496403 CGATGCATGCAGATCACGCT 61.496 55.000 26.69 6.16 34.49 5.07
2221 15081 1.828331 GACGCAACTCACACCGGAAC 61.828 60.000 9.46 0.00 0.00 3.62
2375 15242 2.469826 CGCTCATTTATGTAGTCGGCA 58.530 47.619 0.00 0.00 0.00 5.69
2471 15344 2.955660 TGGAAGAAGACGCATTGGTTTT 59.044 40.909 0.00 0.00 0.00 2.43
2497 15370 3.393089 TGGAAGACAAGAGTTCAGAGC 57.607 47.619 0.00 0.00 0.00 4.09
2672 15548 3.126171 TCACGATTGCCTAAAAACATCCG 59.874 43.478 0.00 0.00 0.00 4.18
2673 15549 2.159435 ACGATTGCCTAAAAACATCCGC 60.159 45.455 0.00 0.00 0.00 5.54
2717 16647 2.291190 GCGTTGTTTACAGTAGCCCAAA 59.709 45.455 0.00 0.00 0.00 3.28
2725 16655 9.523168 TTGTTTACAGTAGCCCAAACTATAATT 57.477 29.630 0.00 0.00 33.16 1.40
3033 16979 8.154856 GGGGCCTTAAACTAGAAAGAAAAATTT 58.845 33.333 0.84 0.00 0.00 1.82
3127 17128 5.470098 GGACATGTGATGTTGTATATCCCAC 59.530 44.000 1.15 0.00 45.03 4.61
3197 17210 3.637911 TGCCTCCGGTTTTGTACATAT 57.362 42.857 0.00 0.00 0.00 1.78
3374 17387 5.538813 GGGAGAGGAAAAACTTTTGGTGTAT 59.461 40.000 0.00 0.00 0.00 2.29
3457 17471 6.737254 ACCATTATTTTCGATCGTGTTTCT 57.263 33.333 15.94 0.00 0.00 2.52
3476 17490 8.137437 GTGTTTCTGCCATACTATAAAATGCAT 58.863 33.333 0.00 0.00 0.00 3.96
4319 18366 7.088905 AGATGAATCGGGTAATAATGACGTAC 58.911 38.462 0.00 0.00 0.00 3.67
4421 18476 3.324846 TGAAGTGCTACCAATCAGACAGT 59.675 43.478 0.00 0.00 0.00 3.55
4447 18510 1.271597 GGCAGACCAGGTCAAGTGAAT 60.272 52.381 22.31 0.00 34.60 2.57
4491 18557 8.860088 GCCTATCATATTTTGGTTATGAAAGGT 58.140 33.333 0.00 0.00 39.00 3.50
4494 18560 8.947055 ATCATATTTTGGTTATGAAAGGTTGC 57.053 30.769 0.00 0.00 39.00 4.17
4519 18585 0.870307 GGCGTATCTGTGTAGCGGTG 60.870 60.000 0.00 0.00 0.00 4.94
4521 18587 1.064505 GCGTATCTGTGTAGCGGTGTA 59.935 52.381 0.00 0.00 0.00 2.90
4711 18877 5.067413 CAGATGCATTAACTGAATCCTGCTT 59.933 40.000 0.00 0.00 40.45 3.91
4734 18906 9.319404 GCTTGGTAAAGTTGCATCTATATGCGT 62.319 40.741 8.39 0.00 46.71 5.24
4758 18941 3.237746 TCCATGTTTTCTTCCATTGGCA 58.762 40.909 0.00 0.00 0.00 4.92
4759 18942 3.258872 TCCATGTTTTCTTCCATTGGCAG 59.741 43.478 0.00 0.00 0.00 4.85
4775 18958 1.065418 GGCAGGCAAGGCTAACTAGAA 60.065 52.381 0.00 0.00 0.00 2.10
4776 18959 2.422093 GGCAGGCAAGGCTAACTAGAAT 60.422 50.000 0.00 0.00 0.00 2.40
4777 18960 3.181454 GGCAGGCAAGGCTAACTAGAATA 60.181 47.826 0.00 0.00 0.00 1.75
4778 18961 4.505742 GGCAGGCAAGGCTAACTAGAATAT 60.506 45.833 0.00 0.00 0.00 1.28
4779 18962 5.066593 GCAGGCAAGGCTAACTAGAATATT 58.933 41.667 0.00 0.00 0.00 1.28
4780 18963 5.049129 GCAGGCAAGGCTAACTAGAATATTG 60.049 44.000 0.00 0.00 0.00 1.90
4781 18964 5.471456 CAGGCAAGGCTAACTAGAATATTGG 59.529 44.000 0.00 0.00 0.00 3.16
4782 18965 5.132816 AGGCAAGGCTAACTAGAATATTGGT 59.867 40.000 0.00 0.00 0.00 3.67
4783 18966 6.329197 AGGCAAGGCTAACTAGAATATTGGTA 59.671 38.462 0.00 0.00 0.00 3.25
4784 18967 7.017651 AGGCAAGGCTAACTAGAATATTGGTAT 59.982 37.037 0.00 0.00 0.00 2.73
4785 18968 7.119846 GGCAAGGCTAACTAGAATATTGGTATG 59.880 40.741 0.00 0.00 0.00 2.39
4786 18969 7.361286 GCAAGGCTAACTAGAATATTGGTATGC 60.361 40.741 0.00 0.00 0.00 3.14
4787 18970 7.316393 AGGCTAACTAGAATATTGGTATGCA 57.684 36.000 0.00 0.00 0.00 3.96
4788 18971 7.922382 AGGCTAACTAGAATATTGGTATGCAT 58.078 34.615 3.79 3.79 0.00 3.96
4789 18972 7.826252 AGGCTAACTAGAATATTGGTATGCATG 59.174 37.037 10.16 0.00 0.00 4.06
4790 18973 7.607991 GGCTAACTAGAATATTGGTATGCATGT 59.392 37.037 10.16 0.00 0.00 3.21
4791 18974 9.003658 GCTAACTAGAATATTGGTATGCATGTT 57.996 33.333 10.16 2.51 0.00 2.71
4847 19030 2.352388 GTTCCGGTGCTGCAGTTAATA 58.648 47.619 16.64 0.00 0.00 0.98
4857 19040 3.309682 GCTGCAGTTAATATGTTCGAGCA 59.690 43.478 16.64 3.86 0.00 4.26
4869 19052 2.549329 TGTTCGAGCACGTAGTAGTTCA 59.451 45.455 2.86 0.00 41.61 3.18
4874 19057 2.985139 GAGCACGTAGTAGTTCAACACC 59.015 50.000 0.00 0.00 41.61 4.16
4885 19068 5.754890 AGTAGTTCAACACCGTTACGAAAAT 59.245 36.000 6.24 0.00 0.00 1.82
4887 19070 6.601741 AGTTCAACACCGTTACGAAAATAA 57.398 33.333 6.24 0.00 0.00 1.40
4896 19079 4.726704 CCGTTACGAAAATAAGCATTTCCG 59.273 41.667 6.24 0.00 33.09 4.30
4901 19084 6.345920 ACGAAAATAAGCATTTCCGTAGAG 57.654 37.500 0.00 0.00 33.09 2.43
4902 19085 5.873164 ACGAAAATAAGCATTTCCGTAGAGT 59.127 36.000 0.00 0.00 33.09 3.24
4903 19086 6.370718 ACGAAAATAAGCATTTCCGTAGAGTT 59.629 34.615 0.00 0.00 33.09 3.01
4904 19087 6.682863 CGAAAATAAGCATTTCCGTAGAGTTG 59.317 38.462 0.00 0.00 33.09 3.16
4905 19088 7.448748 AAAATAAGCATTTCCGTAGAGTTGT 57.551 32.000 0.00 0.00 33.09 3.32
4906 19089 6.663944 AATAAGCATTTCCGTAGAGTTGTC 57.336 37.500 0.00 0.00 0.00 3.18
4907 19090 3.678056 AGCATTTCCGTAGAGTTGTCA 57.322 42.857 0.00 0.00 0.00 3.58
4908 19091 4.207891 AGCATTTCCGTAGAGTTGTCAT 57.792 40.909 0.00 0.00 0.00 3.06
4909 19092 3.935203 AGCATTTCCGTAGAGTTGTCATG 59.065 43.478 0.00 0.00 0.00 3.07
4910 19093 3.932710 GCATTTCCGTAGAGTTGTCATGA 59.067 43.478 0.00 0.00 0.00 3.07
4911 19094 4.572389 GCATTTCCGTAGAGTTGTCATGAT 59.428 41.667 0.00 0.00 0.00 2.45
4912 19095 5.753438 GCATTTCCGTAGAGTTGTCATGATA 59.247 40.000 0.00 0.00 0.00 2.15
4913 19096 6.257849 GCATTTCCGTAGAGTTGTCATGATAA 59.742 38.462 0.00 0.00 0.00 1.75
4914 19097 7.201609 GCATTTCCGTAGAGTTGTCATGATAAA 60.202 37.037 6.45 0.00 0.00 1.40
4915 19098 8.664798 CATTTCCGTAGAGTTGTCATGATAAAA 58.335 33.333 6.45 0.00 0.00 1.52
4916 19099 7.591006 TTCCGTAGAGTTGTCATGATAAAAC 57.409 36.000 6.45 8.36 0.00 2.43
4917 19100 6.693466 TCCGTAGAGTTGTCATGATAAAACA 58.307 36.000 6.45 0.00 0.00 2.83
4918 19101 7.156000 TCCGTAGAGTTGTCATGATAAAACAA 58.844 34.615 6.45 0.00 0.00 2.83
4919 19102 7.658167 TCCGTAGAGTTGTCATGATAAAACAAA 59.342 33.333 6.45 0.00 34.90 2.83
4920 19103 7.744715 CCGTAGAGTTGTCATGATAAAACAAAC 59.255 37.037 6.45 7.13 34.90 2.93
4921 19104 8.279800 CGTAGAGTTGTCATGATAAAACAAACA 58.720 33.333 6.45 0.00 34.90 2.83
4924 19107 8.849168 AGAGTTGTCATGATAAAACAAACATGA 58.151 29.630 6.45 0.00 44.05 3.07
4925 19108 9.462174 GAGTTGTCATGATAAAACAAACATGAA 57.538 29.630 6.45 0.00 46.39 2.57
4926 19109 9.467258 AGTTGTCATGATAAAACAAACATGAAG 57.533 29.630 6.45 0.00 46.39 3.02
4927 19110 8.702438 GTTGTCATGATAAAACAAACATGAAGG 58.298 33.333 6.45 0.00 46.39 3.46
4928 19111 7.377398 TGTCATGATAAAACAAACATGAAGGG 58.623 34.615 0.00 0.00 46.39 3.95
4956 19139 8.871629 TCTTTTTGGTATTTATCCTGCTAACA 57.128 30.769 0.00 0.00 0.00 2.41
4972 19155 5.109210 TGCTAACAGTCCATAAGTTCATCG 58.891 41.667 0.00 0.00 0.00 3.84
4976 19159 3.116300 CAGTCCATAAGTTCATCGACCG 58.884 50.000 0.00 0.00 0.00 4.79
5161 19344 6.484288 TCAACAGACCAAATATGATGACCTT 58.516 36.000 0.00 0.00 27.41 3.50
5187 19370 2.485814 CCTGCTAGTTCTTTCCAACAGC 59.514 50.000 0.00 0.00 34.06 4.40
5195 19378 4.887071 AGTTCTTTCCAACAGCACATTGTA 59.113 37.500 0.00 0.00 0.00 2.41
5200 19383 6.922957 TCTTTCCAACAGCACATTGTATTTTC 59.077 34.615 0.00 0.00 0.00 2.29
5201 19384 6.403866 TTCCAACAGCACATTGTATTTTCT 57.596 33.333 0.00 0.00 0.00 2.52
5202 19385 7.517614 TTCCAACAGCACATTGTATTTTCTA 57.482 32.000 0.00 0.00 0.00 2.10
5203 19386 6.908825 TCCAACAGCACATTGTATTTTCTAC 58.091 36.000 0.00 0.00 0.00 2.59
5205 19388 6.803320 CCAACAGCACATTGTATTTTCTACTG 59.197 38.462 0.00 0.00 0.00 2.74
5249 19434 9.903682 AATTTGCTTGTCTTGATATATATGTGC 57.096 29.630 0.00 0.00 0.00 4.57
5250 19435 8.449251 TTTGCTTGTCTTGATATATATGTGCA 57.551 30.769 0.00 0.00 0.00 4.57
5251 19436 8.449251 TTGCTTGTCTTGATATATATGTGCAA 57.551 30.769 0.00 0.00 32.86 4.08
5253 19438 9.070179 TGCTTGTCTTGATATATATGTGCAATT 57.930 29.630 0.00 0.00 0.00 2.32
5254 19439 9.552114 GCTTGTCTTGATATATATGTGCAATTC 57.448 33.333 0.00 0.00 0.00 2.17
5338 19523 6.014156 AGGACCCAATATAGCATCTCAACTAC 60.014 42.308 0.00 0.00 0.00 2.73
5341 19526 5.279506 CCCAATATAGCATCTCAACTACGGT 60.280 44.000 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.170734 TCATGTCCTGAAATTCTTCTAATTCTG 57.829 33.333 0.00 0.00 32.33 3.02
37 38 9.171877 GTCATGTCCTGAAATTCTTCTAATTCT 57.828 33.333 0.00 0.00 35.07 2.40
38 39 8.950210 TGTCATGTCCTGAAATTCTTCTAATTC 58.050 33.333 0.00 0.00 35.07 2.17
40 41 8.324306 TCTGTCATGTCCTGAAATTCTTCTAAT 58.676 33.333 0.00 0.00 35.07 1.73
43 44 6.119240 TCTGTCATGTCCTGAAATTCTTCT 57.881 37.500 0.00 0.00 35.07 2.85
44 45 6.808008 TTCTGTCATGTCCTGAAATTCTTC 57.192 37.500 0.00 0.00 35.07 2.87
45 46 6.547141 TGTTTCTGTCATGTCCTGAAATTCTT 59.453 34.615 16.60 0.00 35.07 2.52
48 49 6.906157 ATGTTTCTGTCATGTCCTGAAATT 57.094 33.333 16.60 9.54 35.07 1.82
49 50 8.585471 AATATGTTTCTGTCATGTCCTGAAAT 57.415 30.769 16.60 9.26 35.07 2.17
50 51 7.665145 TGAATATGTTTCTGTCATGTCCTGAAA 59.335 33.333 12.51 12.51 35.07 2.69
53 54 6.990341 TGAATATGTTTCTGTCATGTCCTG 57.010 37.500 0.00 0.00 0.00 3.86
54 55 7.341030 TCATGAATATGTTTCTGTCATGTCCT 58.659 34.615 10.72 0.00 43.83 3.85
55 56 7.558161 TCATGAATATGTTTCTGTCATGTCC 57.442 36.000 10.72 0.00 43.83 4.02
57 58 8.781196 GCTATCATGAATATGTTTCTGTCATGT 58.219 33.333 0.00 3.30 43.83 3.21
58 59 8.780249 TGCTATCATGAATATGTTTCTGTCATG 58.220 33.333 0.00 5.75 44.46 3.07
59 60 8.913487 TGCTATCATGAATATGTTTCTGTCAT 57.087 30.769 0.00 0.00 35.73 3.06
61 62 8.834465 AGTTGCTATCATGAATATGTTTCTGTC 58.166 33.333 0.00 0.00 35.73 3.51
62 63 8.743085 AGTTGCTATCATGAATATGTTTCTGT 57.257 30.769 0.00 0.00 35.73 3.41
83 84 0.863144 GCCACAAGCATGCAAAGTTG 59.137 50.000 21.98 17.35 42.97 3.16
84 85 3.294079 GCCACAAGCATGCAAAGTT 57.706 47.368 21.98 1.65 42.97 2.66
94 95 0.520404 CTGTGATGAGTGCCACAAGC 59.480 55.000 0.00 0.00 42.00 4.01
95 96 1.888215 ACTGTGATGAGTGCCACAAG 58.112 50.000 0.00 0.00 42.00 3.16
98 99 2.069273 GTGTACTGTGATGAGTGCCAC 58.931 52.381 0.00 0.00 0.00 5.01
99 100 1.970640 AGTGTACTGTGATGAGTGCCA 59.029 47.619 0.00 0.00 0.00 4.92
100 101 2.751166 AGTGTACTGTGATGAGTGCC 57.249 50.000 0.00 0.00 0.00 5.01
101 102 6.727824 AATTTAGTGTACTGTGATGAGTGC 57.272 37.500 0.00 0.00 0.00 4.40
103 104 9.371136 CATGTAATTTAGTGTACTGTGATGAGT 57.629 33.333 0.00 0.00 0.00 3.41
106 107 8.716646 TCCATGTAATTTAGTGTACTGTGATG 57.283 34.615 0.00 0.00 0.00 3.07
107 108 9.905713 ATTCCATGTAATTTAGTGTACTGTGAT 57.094 29.630 0.00 0.00 0.00 3.06
123 124 9.725019 CTCCATGCTAGTATTTATTCCATGTAA 57.275 33.333 0.00 0.00 0.00 2.41
124 125 8.880244 ACTCCATGCTAGTATTTATTCCATGTA 58.120 33.333 0.00 0.00 0.00 2.29
125 126 7.749666 ACTCCATGCTAGTATTTATTCCATGT 58.250 34.615 0.00 0.00 0.00 3.21
126 127 9.376075 CTACTCCATGCTAGTATTTATTCCATG 57.624 37.037 6.61 0.00 0.00 3.66
127 128 8.543774 CCTACTCCATGCTAGTATTTATTCCAT 58.456 37.037 6.61 0.00 0.00 3.41
128 129 7.527196 GCCTACTCCATGCTAGTATTTATTCCA 60.527 40.741 6.61 0.00 0.00 3.53
129 130 6.819146 GCCTACTCCATGCTAGTATTTATTCC 59.181 42.308 6.61 0.00 0.00 3.01
130 131 7.386851 TGCCTACTCCATGCTAGTATTTATTC 58.613 38.462 6.61 0.00 0.00 1.75
131 132 7.316393 TGCCTACTCCATGCTAGTATTTATT 57.684 36.000 6.61 0.00 0.00 1.40
132 133 6.935240 TGCCTACTCCATGCTAGTATTTAT 57.065 37.500 6.61 0.00 0.00 1.40
133 134 6.496911 TCATGCCTACTCCATGCTAGTATTTA 59.503 38.462 6.61 0.00 39.83 1.40
134 135 5.307976 TCATGCCTACTCCATGCTAGTATTT 59.692 40.000 6.61 0.00 39.83 1.40
135 136 4.840680 TCATGCCTACTCCATGCTAGTATT 59.159 41.667 6.61 0.00 39.83 1.89
136 137 4.420206 TCATGCCTACTCCATGCTAGTAT 58.580 43.478 6.61 0.00 39.83 2.12
138 139 2.682594 TCATGCCTACTCCATGCTAGT 58.317 47.619 4.58 4.58 39.83 2.57
142 143 3.633525 TCATTTTCATGCCTACTCCATGC 59.366 43.478 0.00 0.00 39.83 4.06
146 147 3.950395 AGCTTCATTTTCATGCCTACTCC 59.050 43.478 0.00 0.00 0.00 3.85
147 148 6.458888 GGTTAGCTTCATTTTCATGCCTACTC 60.459 42.308 0.00 0.00 0.00 2.59
148 149 5.358160 GGTTAGCTTCATTTTCATGCCTACT 59.642 40.000 0.00 0.00 0.00 2.57
149 150 5.125417 TGGTTAGCTTCATTTTCATGCCTAC 59.875 40.000 0.00 0.00 0.00 3.18
150 151 5.260424 TGGTTAGCTTCATTTTCATGCCTA 58.740 37.500 0.00 0.00 0.00 3.93
151 152 4.088634 TGGTTAGCTTCATTTTCATGCCT 58.911 39.130 0.00 0.00 0.00 4.75
152 153 4.454728 TGGTTAGCTTCATTTTCATGCC 57.545 40.909 0.00 0.00 0.00 4.40
153 154 5.290158 CACATGGTTAGCTTCATTTTCATGC 59.710 40.000 0.00 0.00 35.51 4.06
155 156 5.413499 GCACATGGTTAGCTTCATTTTCAT 58.587 37.500 0.00 0.00 0.00 2.57
156 157 4.321899 GGCACATGGTTAGCTTCATTTTCA 60.322 41.667 0.00 0.00 0.00 2.69
157 158 4.176271 GGCACATGGTTAGCTTCATTTTC 58.824 43.478 0.00 0.00 0.00 2.29
158 159 3.577848 TGGCACATGGTTAGCTTCATTTT 59.422 39.130 0.00 0.00 0.00 1.82
159 160 3.164268 TGGCACATGGTTAGCTTCATTT 58.836 40.909 0.00 0.00 0.00 2.32
160 161 2.806434 TGGCACATGGTTAGCTTCATT 58.194 42.857 0.00 0.00 0.00 2.57
161 162 2.512692 TGGCACATGGTTAGCTTCAT 57.487 45.000 0.00 0.00 0.00 2.57
177 178 2.227388 GTATGCTATGAGGTTGCATGGC 59.773 50.000 9.55 0.00 46.37 4.40
178 179 3.748083 AGTATGCTATGAGGTTGCATGG 58.252 45.455 9.55 0.00 46.37 3.66
179 180 4.818005 TCAAGTATGCTATGAGGTTGCATG 59.182 41.667 9.55 0.00 46.37 4.06
181 182 4.486125 TCAAGTATGCTATGAGGTTGCA 57.514 40.909 0.00 0.00 42.56 4.08
182 183 5.818136 TTTCAAGTATGCTATGAGGTTGC 57.182 39.130 0.00 0.00 0.00 4.17
185 186 9.851686 TGATTTATTTCAAGTATGCTATGAGGT 57.148 29.630 0.00 0.00 0.00 3.85
197 198 9.868277 TGTCTTTTTGTGTGATTTATTTCAAGT 57.132 25.926 0.00 0.00 0.00 3.16
205 206 9.645059 TGATGTTTTGTCTTTTTGTGTGATTTA 57.355 25.926 0.00 0.00 0.00 1.40
206 207 8.545229 TGATGTTTTGTCTTTTTGTGTGATTT 57.455 26.923 0.00 0.00 0.00 2.17
207 208 8.721019 ATGATGTTTTGTCTTTTTGTGTGATT 57.279 26.923 0.00 0.00 0.00 2.57
208 209 7.980662 TGATGATGTTTTGTCTTTTTGTGTGAT 59.019 29.630 0.00 0.00 0.00 3.06
209 210 7.318893 TGATGATGTTTTGTCTTTTTGTGTGA 58.681 30.769 0.00 0.00 0.00 3.58
210 211 7.522901 TGATGATGTTTTGTCTTTTTGTGTG 57.477 32.000 0.00 0.00 0.00 3.82
211 212 8.034215 TCTTGATGATGTTTTGTCTTTTTGTGT 58.966 29.630 0.00 0.00 0.00 3.72
212 213 8.410030 TCTTGATGATGTTTTGTCTTTTTGTG 57.590 30.769 0.00 0.00 0.00 3.33
213 214 9.037737 CATCTTGATGATGTTTTGTCTTTTTGT 57.962 29.630 4.72 0.00 45.55 2.83
228 229 6.873997 ACATGTCATTTTGCATCTTGATGAT 58.126 32.000 14.09 0.00 35.40 2.45
230 231 6.588373 TGAACATGTCATTTTGCATCTTGATG 59.412 34.615 0.00 6.27 0.00 3.07
231 232 6.693466 TGAACATGTCATTTTGCATCTTGAT 58.307 32.000 0.00 0.00 0.00 2.57
232 233 6.086785 TGAACATGTCATTTTGCATCTTGA 57.913 33.333 0.00 0.00 0.00 3.02
235 236 6.275494 TCATGAACATGTCATTTTGCATCT 57.725 33.333 13.35 0.00 45.13 2.90
236 237 6.588756 AGTTCATGAACATGTCATTTTGCATC 59.411 34.615 33.92 6.95 45.13 3.91
237 238 6.460781 AGTTCATGAACATGTCATTTTGCAT 58.539 32.000 33.92 10.69 45.13 3.96
241 242 6.518493 AGCAAGTTCATGAACATGTCATTTT 58.482 32.000 32.62 18.32 45.13 1.82
242 243 6.092955 AGCAAGTTCATGAACATGTCATTT 57.907 33.333 32.62 18.91 45.13 2.32
243 244 5.242171 TGAGCAAGTTCATGAACATGTCATT 59.758 36.000 32.62 21.04 45.13 2.57
245 246 4.136051 TGAGCAAGTTCATGAACATGTCA 58.864 39.130 32.62 29.31 43.47 3.58
248 249 5.163992 GCATTTGAGCAAGTTCATGAACATG 60.164 40.000 33.92 31.99 43.47 3.21
249 250 4.927425 GCATTTGAGCAAGTTCATGAACAT 59.073 37.500 33.92 23.50 43.47 2.71
250 251 4.202131 TGCATTTGAGCAAGTTCATGAACA 60.202 37.500 33.92 15.68 42.46 3.18
252 253 4.587584 TGCATTTGAGCAAGTTCATGAA 57.412 36.364 3.38 3.38 42.46 2.57
263 264 4.451774 TGGCATTAGTTTTTGCATTTGAGC 59.548 37.500 0.00 0.00 40.66 4.26
264 265 5.106987 GGTGGCATTAGTTTTTGCATTTGAG 60.107 40.000 0.00 0.00 40.66 3.02
265 266 4.754114 GGTGGCATTAGTTTTTGCATTTGA 59.246 37.500 0.00 0.00 40.66 2.69
266 267 4.514441 TGGTGGCATTAGTTTTTGCATTTG 59.486 37.500 0.00 0.00 40.66 2.32
267 268 4.514816 GTGGTGGCATTAGTTTTTGCATTT 59.485 37.500 0.00 0.00 40.66 2.32
269 270 3.324556 AGTGGTGGCATTAGTTTTTGCAT 59.675 39.130 0.00 0.00 40.66 3.96
270 271 2.697751 AGTGGTGGCATTAGTTTTTGCA 59.302 40.909 0.00 0.00 40.66 4.08
271 272 3.059166 CAGTGGTGGCATTAGTTTTTGC 58.941 45.455 0.00 0.00 38.14 3.68
273 274 3.571590 TCCAGTGGTGGCATTAGTTTTT 58.428 40.909 9.54 0.00 44.60 1.94
274 275 3.237268 TCCAGTGGTGGCATTAGTTTT 57.763 42.857 9.54 0.00 44.60 2.43
276 277 3.456380 AATCCAGTGGTGGCATTAGTT 57.544 42.857 9.54 0.00 44.60 2.24
277 278 4.079787 ACATAATCCAGTGGTGGCATTAGT 60.080 41.667 9.54 3.98 44.60 2.24
278 279 4.276678 CACATAATCCAGTGGTGGCATTAG 59.723 45.833 9.54 3.44 44.60 1.73
279 280 4.206375 CACATAATCCAGTGGTGGCATTA 58.794 43.478 9.54 6.29 44.60 1.90
280 281 3.025978 CACATAATCCAGTGGTGGCATT 58.974 45.455 9.54 4.04 44.60 3.56
281 282 2.658285 CACATAATCCAGTGGTGGCAT 58.342 47.619 9.54 0.00 44.60 4.40
282 283 1.954733 GCACATAATCCAGTGGTGGCA 60.955 52.381 9.54 0.00 44.60 4.92
283 284 0.740737 GCACATAATCCAGTGGTGGC 59.259 55.000 9.54 2.54 44.60 5.01
284 285 1.016627 CGCACATAATCCAGTGGTGG 58.983 55.000 9.54 0.00 46.63 4.61
286 287 0.748005 GCCGCACATAATCCAGTGGT 60.748 55.000 9.54 0.00 36.29 4.16
287 288 1.775039 CGCCGCACATAATCCAGTGG 61.775 60.000 1.40 1.40 36.29 4.00
290 291 0.530650 ACTCGCCGCACATAATCCAG 60.531 55.000 0.00 0.00 0.00 3.86
291 292 0.809636 CACTCGCCGCACATAATCCA 60.810 55.000 0.00 0.00 0.00 3.41
292 293 0.810031 ACACTCGCCGCACATAATCC 60.810 55.000 0.00 0.00 0.00 3.01
293 294 0.301687 CACACTCGCCGCACATAATC 59.698 55.000 0.00 0.00 0.00 1.75
294 295 0.391130 ACACACTCGCCGCACATAAT 60.391 50.000 0.00 0.00 0.00 1.28
295 296 1.005512 ACACACTCGCCGCACATAA 60.006 52.632 0.00 0.00 0.00 1.90
481 8603 0.681564 CTCACTAGGCTCTCGTGGGT 60.682 60.000 10.38 0.00 29.78 4.51
494 8616 2.351244 CCGACCTGCTGCCTCACTA 61.351 63.158 0.00 0.00 0.00 2.74
538 8669 2.129146 ACGACTCGTTGACCCACCA 61.129 57.895 0.00 0.00 36.35 4.17
550 8685 1.202817 GGACAAGGAGGAGAACGACTC 59.797 57.143 0.00 0.00 44.24 3.36
690 8852 3.898509 CTCGCTCCGCTCTCCTGG 61.899 72.222 0.00 0.00 0.00 4.45
709 8871 3.812019 CGCACGACCTCCGCTAGT 61.812 66.667 0.00 0.00 43.32 2.57
800 9674 5.057149 AGTAACCGTGGATCATCAATAAGC 58.943 41.667 0.00 0.00 0.00 3.09
834 9708 0.326618 GGAGATCCACCTCCCCAAGA 60.327 60.000 0.00 0.00 45.44 3.02
881 9755 3.181487 GGAAAACGCCAGCATACATCAAT 60.181 43.478 0.00 0.00 0.00 2.57
1072 9987 2.183046 GAGAGGCACGAGGAGCAC 59.817 66.667 0.00 0.00 0.00 4.40
1134 10055 5.125417 GGCTTTGTAGGTGCTATTTGATTCA 59.875 40.000 0.00 0.00 0.00 2.57
1176 10097 0.038310 CCTTCTTTGGGAGGGTGGAC 59.962 60.000 0.00 0.00 36.56 4.02
1201 10122 2.883828 CGAAGAGGGTGGTGCTGGT 61.884 63.158 0.00 0.00 0.00 4.00
1283 10213 2.281070 CACAGGCAGAGGCGTTGT 60.281 61.111 0.00 0.00 42.47 3.32
1550 10486 1.274416 TGAACCTCCTGGGGCTATTCT 60.274 52.381 0.00 0.00 40.03 2.40
1554 10490 1.615424 GGTGAACCTCCTGGGGCTA 60.615 63.158 0.00 0.00 40.03 3.93
1581 10517 1.414550 GGGAGGGAGCTGACATCTAAC 59.585 57.143 0.00 0.00 0.00 2.34
1691 10633 2.616842 CCTTTATTACCGTCCATGTGCC 59.383 50.000 0.00 0.00 0.00 5.01
1707 10649 3.399644 TCCCCAGAATTTGACCACCTTTA 59.600 43.478 0.00 0.00 0.00 1.85
1792 10734 0.959372 ACTGCAGATGCCAAGCTGAC 60.959 55.000 23.35 0.00 42.67 3.51
1862 10804 2.594962 GGTGACTGCGGTTGTGACG 61.595 63.158 0.00 0.00 0.00 4.35
1894 10854 3.664025 CTTGCGCCTCCGGATGTGA 62.664 63.158 22.55 6.43 33.87 3.58
2007 10977 5.124457 GCAAGATGTGTGACATGTTTCCTAT 59.876 40.000 0.00 0.00 38.72 2.57
2094 11196 2.572290 ACGGAAAGACAAAGGGAGTTG 58.428 47.619 0.00 0.00 34.52 3.16
2375 15242 8.556213 AGGACACACAAATATACAACGTTAAT 57.444 30.769 0.00 0.04 0.00 1.40
2471 15344 5.305386 TCTGAACTCTTGTCTTCCAATCTCA 59.695 40.000 0.00 0.00 31.20 3.27
2511 15384 6.909357 GTGTAGCATGCAATATCTCAGAAAAC 59.091 38.462 21.98 0.00 27.52 2.43
2783 16713 9.671279 CTGCCATTGTAGATATTGGAATGTATA 57.329 33.333 0.00 0.00 0.00 1.47
3106 17088 5.702670 GGAGTGGGATATACAACATCACATG 59.297 44.000 0.00 0.00 38.08 3.21
3197 17210 1.713647 TCTGGTAATTGGCCCTGGAAA 59.286 47.619 0.00 0.00 0.00 3.13
3374 17387 7.123997 TCCAAGCTCTTATTTGGCAAATATTCA 59.876 33.333 27.94 15.61 42.82 2.57
3457 17471 9.791801 TTAGAGAATGCATTTTATAGTATGGCA 57.208 29.630 14.33 0.00 0.00 4.92
3476 17490 4.174009 GCTAACATCTGCACGTTAGAGAA 58.826 43.478 21.62 0.00 44.81 2.87
3484 17498 1.535028 TGTTTGGCTAACATCTGCACG 59.465 47.619 10.43 0.00 41.73 5.34
3508 17522 7.329226 CACACATCTTTTATTCCAATCAACCAC 59.671 37.037 0.00 0.00 0.00 4.16
3959 17974 7.695055 TCACATATCCAAGGAGGTTAAGAAAA 58.305 34.615 0.00 0.00 39.02 2.29
4115 18147 1.069823 CGCTGCATGGATCTCCTTAGT 59.930 52.381 0.00 0.00 36.82 2.24
4319 18366 2.159282 AGTCGTTATTACTGCAGACGGG 60.159 50.000 23.35 2.69 34.72 5.28
4409 18464 1.745141 GCCTGCCTACTGTCTGATTGG 60.745 57.143 0.00 0.00 0.00 3.16
4421 18476 1.990060 GACCTGGTCTGCCTGCCTA 60.990 63.158 19.53 0.00 35.27 3.93
4447 18510 1.280998 GGCTTACTTGGTCTGCCCTAA 59.719 52.381 0.00 0.00 37.81 2.69
4494 18560 1.717791 TACACAGATACGCCGGTCGG 61.718 60.000 19.73 4.85 43.86 4.79
4509 18575 0.870307 CGCAGGATACACCGCTACAC 60.870 60.000 0.00 0.00 44.74 2.90
4734 18906 4.021192 GCCAATGGAAGAAAACATGGAAGA 60.021 41.667 2.05 0.00 0.00 2.87
4758 18941 5.132816 ACCAATATTCTAGTTAGCCTTGCCT 59.867 40.000 0.00 0.00 0.00 4.75
4759 18942 5.377478 ACCAATATTCTAGTTAGCCTTGCC 58.623 41.667 0.00 0.00 0.00 4.52
4775 18958 9.399797 CCATGATACTAACATGCATACCAATAT 57.600 33.333 0.00 0.00 42.31 1.28
4776 18959 8.601546 TCCATGATACTAACATGCATACCAATA 58.398 33.333 0.00 0.00 42.31 1.90
4777 18960 7.460910 TCCATGATACTAACATGCATACCAAT 58.539 34.615 0.00 0.00 42.31 3.16
4778 18961 6.836242 TCCATGATACTAACATGCATACCAA 58.164 36.000 0.00 0.00 42.31 3.67
4779 18962 6.432403 TCCATGATACTAACATGCATACCA 57.568 37.500 0.00 0.00 42.31 3.25
4780 18963 7.308589 GGTTTCCATGATACTAACATGCATACC 60.309 40.741 0.00 0.00 42.31 2.73
4781 18964 7.445402 AGGTTTCCATGATACTAACATGCATAC 59.555 37.037 0.00 0.00 42.31 2.39
4782 18965 7.517320 AGGTTTCCATGATACTAACATGCATA 58.483 34.615 0.00 0.00 42.31 3.14
4783 18966 6.367983 AGGTTTCCATGATACTAACATGCAT 58.632 36.000 0.00 0.00 42.31 3.96
4784 18967 5.754782 AGGTTTCCATGATACTAACATGCA 58.245 37.500 0.00 0.00 42.31 3.96
4785 18968 6.318648 TCAAGGTTTCCATGATACTAACATGC 59.681 38.462 0.00 0.00 42.31 4.06
4786 18969 7.012704 CCTCAAGGTTTCCATGATACTAACATG 59.987 40.741 0.00 0.00 42.99 3.21
4787 18970 7.056635 CCTCAAGGTTTCCATGATACTAACAT 58.943 38.462 0.00 0.00 30.66 2.71
4788 18971 6.414732 CCTCAAGGTTTCCATGATACTAACA 58.585 40.000 0.00 0.00 30.66 2.41
4789 18972 5.297029 GCCTCAAGGTTTCCATGATACTAAC 59.703 44.000 0.00 0.00 30.66 2.34
4790 18973 5.437060 GCCTCAAGGTTTCCATGATACTAA 58.563 41.667 0.00 0.00 30.66 2.24
4791 18974 4.141482 GGCCTCAAGGTTTCCATGATACTA 60.141 45.833 0.00 0.00 30.66 1.82
4792 18975 3.372025 GGCCTCAAGGTTTCCATGATACT 60.372 47.826 0.00 0.00 30.66 2.12
4793 18976 2.952310 GGCCTCAAGGTTTCCATGATAC 59.048 50.000 0.00 0.00 30.66 2.24
4794 18977 2.580322 TGGCCTCAAGGTTTCCATGATA 59.420 45.455 3.32 0.00 30.66 2.15
4847 19030 3.189910 TGAACTACTACGTGCTCGAACAT 59.810 43.478 16.04 0.07 40.62 2.71
4857 19040 3.715628 AACGGTGTTGAACTACTACGT 57.284 42.857 0.00 0.00 34.39 3.57
4863 19046 7.569226 GCTTATTTTCGTAACGGTGTTGAACTA 60.569 37.037 0.00 0.00 0.00 2.24
4869 19052 5.616488 ATGCTTATTTTCGTAACGGTGTT 57.384 34.783 0.00 0.00 0.00 3.32
4874 19057 5.826866 CGGAAATGCTTATTTTCGTAACG 57.173 39.130 5.51 0.00 37.65 3.18
4885 19068 5.142061 TGACAACTCTACGGAAATGCTTA 57.858 39.130 0.00 0.00 0.00 3.09
4887 19070 3.678056 TGACAACTCTACGGAAATGCT 57.322 42.857 0.00 0.00 0.00 3.79
4901 19084 8.702438 CCTTCATGTTTGTTTTATCATGACAAC 58.298 33.333 0.00 2.34 43.74 3.32
4902 19085 7.871973 CCCTTCATGTTTGTTTTATCATGACAA 59.128 33.333 0.00 0.00 43.74 3.18
4903 19086 7.377398 CCCTTCATGTTTGTTTTATCATGACA 58.623 34.615 0.00 0.00 43.74 3.58
4904 19087 6.813152 CCCCTTCATGTTTGTTTTATCATGAC 59.187 38.462 0.00 0.00 43.74 3.06
4905 19088 6.723515 TCCCCTTCATGTTTGTTTTATCATGA 59.276 34.615 0.00 0.00 42.83 3.07
4906 19089 6.934056 TCCCCTTCATGTTTGTTTTATCATG 58.066 36.000 0.00 0.00 38.96 3.07
4907 19090 7.620888 AGATCCCCTTCATGTTTGTTTTATCAT 59.379 33.333 0.00 0.00 0.00 2.45
4908 19091 6.953520 AGATCCCCTTCATGTTTGTTTTATCA 59.046 34.615 0.00 0.00 0.00 2.15
4909 19092 7.410120 AGATCCCCTTCATGTTTGTTTTATC 57.590 36.000 0.00 0.00 0.00 1.75
4910 19093 7.797121 AAGATCCCCTTCATGTTTGTTTTAT 57.203 32.000 0.00 0.00 0.00 1.40
4911 19094 7.610580 AAAGATCCCCTTCATGTTTGTTTTA 57.389 32.000 0.00 0.00 33.02 1.52
4912 19095 6.499106 AAAGATCCCCTTCATGTTTGTTTT 57.501 33.333 0.00 0.00 33.02 2.43
4913 19096 6.499106 AAAAGATCCCCTTCATGTTTGTTT 57.501 33.333 0.00 0.00 33.02 2.83
4914 19097 6.290605 CAAAAAGATCCCCTTCATGTTTGTT 58.709 36.000 0.00 0.00 33.02 2.83
4915 19098 5.221702 CCAAAAAGATCCCCTTCATGTTTGT 60.222 40.000 0.00 0.00 31.65 2.83
4916 19099 5.221702 ACCAAAAAGATCCCCTTCATGTTTG 60.222 40.000 0.00 0.00 33.02 2.93
4917 19100 4.907269 ACCAAAAAGATCCCCTTCATGTTT 59.093 37.500 0.00 0.00 33.02 2.83
4918 19101 4.492646 ACCAAAAAGATCCCCTTCATGTT 58.507 39.130 0.00 0.00 33.02 2.71
4919 19102 4.132122 ACCAAAAAGATCCCCTTCATGT 57.868 40.909 0.00 0.00 33.02 3.21
4920 19103 6.796785 AATACCAAAAAGATCCCCTTCATG 57.203 37.500 0.00 0.00 33.02 3.07
4921 19104 9.147732 GATAAATACCAAAAAGATCCCCTTCAT 57.852 33.333 0.00 0.00 33.02 2.57
4922 19105 7.563556 GGATAAATACCAAAAAGATCCCCTTCA 59.436 37.037 0.00 0.00 33.02 3.02
4923 19106 7.785028 AGGATAAATACCAAAAAGATCCCCTTC 59.215 37.037 0.00 0.00 33.29 3.46
4924 19107 7.565029 CAGGATAAATACCAAAAAGATCCCCTT 59.435 37.037 0.00 0.00 33.29 3.95
4925 19108 7.069344 CAGGATAAATACCAAAAAGATCCCCT 58.931 38.462 0.00 0.00 33.29 4.79
4926 19109 6.239317 GCAGGATAAATACCAAAAAGATCCCC 60.239 42.308 0.00 0.00 33.29 4.81
4927 19110 6.551227 AGCAGGATAAATACCAAAAAGATCCC 59.449 38.462 0.00 0.00 33.29 3.85
4928 19111 7.588497 AGCAGGATAAATACCAAAAAGATCC 57.412 36.000 0.00 0.00 33.06 3.36
4956 19139 2.758979 ACGGTCGATGAACTTATGGACT 59.241 45.455 0.00 0.00 36.44 3.85
4972 19155 4.897025 AGTAGCAATGAGTAGTACGGTC 57.103 45.455 0.00 0.00 0.00 4.79
5129 19312 6.657541 TCATATTTGGTCTGTTGAAAGTACCC 59.342 38.462 0.00 0.00 0.00 3.69
5131 19314 8.946085 TCATCATATTTGGTCTGTTGAAAGTAC 58.054 33.333 0.00 0.00 0.00 2.73
5141 19324 4.641541 TGCAAGGTCATCATATTTGGTCTG 59.358 41.667 0.00 0.00 0.00 3.51
5226 19411 8.449251 TTGCACATATATATCAAGACAAGCAA 57.551 30.769 0.00 0.00 33.92 3.91
5257 19442 7.706100 TTTCACCTTATTGTTTGGTATACCC 57.294 36.000 19.42 4.61 34.29 3.69
5318 19503 5.784177 ACCGTAGTTGAGATGCTATATTGG 58.216 41.667 0.00 0.00 0.00 3.16
5323 19508 6.940867 TGTATCTACCGTAGTTGAGATGCTAT 59.059 38.462 5.46 0.00 33.64 2.97
5328 19513 7.502895 ACTCATTGTATCTACCGTAGTTGAGAT 59.497 37.037 17.69 6.99 31.18 2.75
5338 19523 5.813717 TGTCGTTACTCATTGTATCTACCG 58.186 41.667 0.00 0.00 0.00 4.02
5341 19526 7.350467 GTCGATGTCGTTACTCATTGTATCTA 58.650 38.462 2.04 0.00 40.80 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.