Multiple sequence alignment - TraesCS3A01G493500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G493500 chr3A 100.000 3652 0 0 2582 6233 719934616 719938267 0.000000e+00 6745.0
1 TraesCS3A01G493500 chr3A 100.000 2296 0 0 1 2296 719932035 719934330 0.000000e+00 4241.0
2 TraesCS3A01G493500 chr3A 85.391 2478 243 56 2969 5393 719995151 719997562 0.000000e+00 2460.0
3 TraesCS3A01G493500 chr3A 88.742 1439 128 17 3962 5388 720230799 720232215 0.000000e+00 1729.0
4 TraesCS3A01G493500 chr3A 88.818 1413 119 15 3983 5378 720077497 720078887 0.000000e+00 1698.0
5 TraesCS3A01G493500 chr3A 87.192 1382 132 19 4051 5393 720221841 720223216 0.000000e+00 1530.0
6 TraesCS3A01G493500 chr3A 84.578 1245 149 19 791 2019 719991605 719992822 0.000000e+00 1195.0
7 TraesCS3A01G493500 chr3A 87.565 965 98 13 852 1807 720228116 720229067 0.000000e+00 1098.0
8 TraesCS3A01G493500 chr3A 83.743 1181 165 18 946 2113 720075331 720076497 0.000000e+00 1092.0
9 TraesCS3A01G493500 chr3A 83.182 1100 132 37 2795 3859 720229665 720230746 0.000000e+00 957.0
10 TraesCS3A01G493500 chr3A 83.676 925 105 28 2971 3863 720076526 720077436 0.000000e+00 830.0
11 TraesCS3A01G493500 chr3A 81.937 991 147 17 837 1807 720214321 720215299 0.000000e+00 809.0
12 TraesCS3A01G493500 chr3A 79.334 1171 142 61 2662 3797 720215842 720216947 0.000000e+00 730.0
13 TraesCS3A01G493500 chr3A 85.019 267 21 7 43 291 719990944 719991209 2.880000e-63 254.0
14 TraesCS3A01G493500 chr3A 83.243 185 26 2 5392 5571 720223260 720223444 1.390000e-36 165.0
15 TraesCS3A01G493500 chr3A 90.476 105 4 1 5462 5566 720079023 720079121 3.920000e-27 134.0
16 TraesCS3A01G493500 chr3A 84.746 118 13 2 5392 5504 720232268 720232385 5.110000e-21 113.0
17 TraesCS3A01G493500 chr3A 96.721 61 2 0 2236 2296 685775433 685775493 1.110000e-17 102.0
18 TraesCS3A01G493500 chr3A 95.349 43 2 0 5462 5504 720078944 720078986 1.120000e-07 69.4
19 TraesCS3A01G493500 chr3D 95.082 2745 122 9 2838 5571 590202922 590205664 0.000000e+00 4309.0
20 TraesCS3A01G493500 chr3D 90.833 2018 159 14 2600 4609 590239626 590241625 0.000000e+00 2678.0
21 TraesCS3A01G493500 chr3D 88.997 1445 120 20 3959 5389 590308337 590309756 0.000000e+00 1751.0
22 TraesCS3A01G493500 chr3D 89.755 1347 79 27 556 1852 590238012 590239349 0.000000e+00 1668.0
23 TraesCS3A01G493500 chr3D 86.947 1402 123 27 791 2189 590200448 590201792 0.000000e+00 1520.0
24 TraesCS3A01G493500 chr3D 83.177 1278 169 26 864 2113 590306093 590307352 0.000000e+00 1127.0
25 TraesCS3A01G493500 chr3D 85.168 1099 121 24 3753 4828 588977858 588976779 0.000000e+00 1088.0
26 TraesCS3A01G493500 chr3D 84.000 925 102 32 2971 3863 590307381 590308291 0.000000e+00 846.0
27 TraesCS3A01G493500 chr3D 94.637 317 17 0 5008 5324 590241623 590241939 5.610000e-135 492.0
28 TraesCS3A01G493500 chr3D 79.385 553 77 20 2942 3468 590222606 590222065 7.690000e-94 355.0
29 TraesCS3A01G493500 chr3D 85.410 329 23 8 1 306 590237634 590237960 1.010000e-82 318.0
30 TraesCS3A01G493500 chr3D 85.065 308 23 9 44 339 590199869 590200165 6.110000e-75 292.0
31 TraesCS3A01G493500 chr3D 88.353 249 21 7 552 792 590200173 590200421 6.110000e-75 292.0
32 TraesCS3A01G493500 chr3D 86.170 282 25 6 1909 2189 590239367 590239635 6.110000e-75 292.0
33 TraesCS3A01G493500 chr3D 92.118 203 14 2 5620 5821 590205797 590205998 1.020000e-72 285.0
34 TraesCS3A01G493500 chr3D 87.854 247 16 5 5909 6141 590220194 590220440 1.710000e-70 278.0
35 TraesCS3A01G493500 chr3D 94.615 130 7 0 2723 2852 590201961 590202090 1.060000e-47 202.0
36 TraesCS3A01G493500 chr3D 98.131 107 1 1 2191 2296 40010238 40010344 1.070000e-42 185.0
37 TraesCS3A01G493500 chr3D 84.277 159 17 4 336 487 604383257 604383100 1.400000e-31 148.0
38 TraesCS3A01G493500 chr3D 83.660 153 21 3 336 486 107038404 107038254 2.340000e-29 141.0
39 TraesCS3A01G493500 chr3D 96.471 85 2 1 5831 5914 590219042 590219126 8.430000e-29 139.0
40 TraesCS3A01G493500 chr3B 96.498 1856 61 3 3490 5343 789179173 789181026 0.000000e+00 3064.0
41 TraesCS3A01G493500 chr3B 84.451 2669 272 65 2965 5571 789220096 789222683 0.000000e+00 2497.0
42 TraesCS3A01G493500 chr3B 89.392 1414 114 20 791 2193 789175858 789177246 0.000000e+00 1748.0
43 TraesCS3A01G493500 chr3B 88.094 1453 131 14 3959 5389 789229001 789230433 0.000000e+00 1687.0
44 TraesCS3A01G493500 chr3B 96.284 888 32 1 2604 3490 789177237 789178124 0.000000e+00 1456.0
45 TraesCS3A01G493500 chr3B 84.880 1455 161 25 599 2014 789217521 789218955 0.000000e+00 1413.0
46 TraesCS3A01G493500 chr3B 87.475 1006 107 11 943 1937 789226913 789227910 0.000000e+00 1142.0
47 TraesCS3A01G493500 chr3B 83.043 920 114 28 2971 3863 789228051 789228955 0.000000e+00 797.0
48 TraesCS3A01G493500 chr3B 91.443 409 30 4 5622 6025 789181348 789181756 1.960000e-154 556.0
49 TraesCS3A01G493500 chr3B 87.755 245 22 4 2726 2969 789219484 789219721 4.760000e-71 279.0
50 TraesCS3A01G493500 chr3B 86.038 265 21 8 42 291 789217116 789217379 2.860000e-68 270.0
51 TraesCS3A01G493500 chr3B 88.837 215 19 3 6021 6233 789181793 789182004 6.200000e-65 259.0
52 TraesCS3A01G493500 chr3B 90.816 196 13 2 5376 5571 789181023 789181213 2.230000e-64 257.0
53 TraesCS3A01G493500 chr3B 81.081 111 14 4 5400 5504 789230484 789230593 1.440000e-11 82.4
54 TraesCS3A01G493500 chr2D 95.726 117 3 2 2182 2296 613442942 613442826 2.970000e-43 187.0
55 TraesCS3A01G493500 chr2D 85.000 100 15 0 339 438 420818743 420818644 1.110000e-17 102.0
56 TraesCS3A01G493500 chr7D 97.273 110 2 1 2188 2296 116693746 116693855 1.070000e-42 185.0
57 TraesCS3A01G493500 chr7D 94.231 52 1 2 335 384 92235634 92235685 1.860000e-10 78.7
58 TraesCS3A01G493500 chr7D 81.395 86 8 7 335 413 547399834 547399918 5.220000e-06 63.9
59 TraesCS3A01G493500 chr1A 95.283 106 5 0 2191 2296 302943353 302943248 1.070000e-37 169.0
60 TraesCS3A01G493500 chr2B 95.652 92 3 1 2190 2280 249532225 249532316 5.040000e-31 147.0
61 TraesCS3A01G493500 chr2B 95.604 91 3 1 2191 2280 291612709 291612799 1.810000e-30 145.0
62 TraesCS3A01G493500 chr2B 81.699 153 24 3 336 486 374075261 374075111 2.360000e-24 124.0
63 TraesCS3A01G493500 chr6A 95.604 91 3 1 2191 2280 609256051 609256141 1.810000e-30 145.0
64 TraesCS3A01G493500 chr6A 76.577 111 18 8 356 461 30878084 30877977 3.000000e-03 54.7
65 TraesCS3A01G493500 chr5D 95.238 84 2 2 2181 2262 329780614 329780531 1.410000e-26 132.0
66 TraesCS3A01G493500 chr5D 92.308 52 2 2 336 385 352937701 352937650 8.670000e-09 73.1
67 TraesCS3A01G493500 chr6B 97.183 71 2 0 2190 2260 191992752 191992682 3.050000e-23 121.0
68 TraesCS3A01G493500 chr5B 92.453 53 2 2 336 386 502495574 502495626 2.410000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G493500 chr3A 719932035 719938267 6232 False 5493.000000 6745 100.000000 1 6233 2 chr3A.!!$F2 6232
1 TraesCS3A01G493500 chr3A 719990944 719997562 6618 False 1303.000000 2460 84.996000 43 5393 3 chr3A.!!$F3 5350
2 TraesCS3A01G493500 chr3A 720228116 720232385 4269 False 974.250000 1729 86.058750 852 5504 4 chr3A.!!$F7 4652
3 TraesCS3A01G493500 chr3A 720221841 720223444 1603 False 847.500000 1530 85.217500 4051 5571 2 chr3A.!!$F6 1520
4 TraesCS3A01G493500 chr3A 720214321 720216947 2626 False 769.500000 809 80.635500 837 3797 2 chr3A.!!$F5 2960
5 TraesCS3A01G493500 chr3A 720075331 720079121 3790 False 764.680000 1698 88.412400 946 5566 5 chr3A.!!$F4 4620
6 TraesCS3A01G493500 chr3D 590306093 590309756 3663 False 1241.333333 1751 85.391333 864 5389 3 chr3D.!!$F5 4525
7 TraesCS3A01G493500 chr3D 590199869 590205998 6129 False 1150.000000 4309 90.363333 44 5821 6 chr3D.!!$F2 5777
8 TraesCS3A01G493500 chr3D 590237634 590241939 4305 False 1089.600000 2678 89.361000 1 5324 5 chr3D.!!$F4 5323
9 TraesCS3A01G493500 chr3D 588976779 588977858 1079 True 1088.000000 1088 85.168000 3753 4828 1 chr3D.!!$R2 1075
10 TraesCS3A01G493500 chr3D 590222065 590222606 541 True 355.000000 355 79.385000 2942 3468 1 chr3D.!!$R3 526
11 TraesCS3A01G493500 chr3D 590219042 590220440 1398 False 208.500000 278 92.162500 5831 6141 2 chr3D.!!$F3 310
12 TraesCS3A01G493500 chr3B 789175858 789182004 6146 False 1223.333333 3064 92.211667 791 6233 6 chr3B.!!$F1 5442
13 TraesCS3A01G493500 chr3B 789217116 789222683 5567 False 1114.750000 2497 85.781000 42 5571 4 chr3B.!!$F2 5529
14 TraesCS3A01G493500 chr3B 789226913 789230593 3680 False 927.100000 1687 84.923250 943 5504 4 chr3B.!!$F3 4561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 607 0.031449 GCGTGGGAGCAGACTAGATC 59.969 60.0 0.00 0.0 37.05 2.75 F
488 632 0.249868 GGTTGCTCAGCCCCAAAAAC 60.250 55.0 0.00 0.0 0.00 2.43 F
1851 2110 0.250038 CCCCACAGTCACAGTCACAG 60.250 60.0 0.00 0.0 0.00 3.66 F
1852 2111 0.882042 CCCACAGTCACAGTCACAGC 60.882 60.0 0.00 0.0 0.00 4.40 F
2876 5783 0.109913 GGTTCAAAGGTCGAAGGGGT 59.890 55.0 0.00 0.0 0.00 4.95 F
4070 8527 0.404040 CTTCCAGGGCCAGTTACCAA 59.596 55.0 6.18 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2156 0.890683 CCATGAAGTTCTTGGGTGGC 59.109 55.000 23.91 0.0 37.86 5.01 R
2193 3295 1.070443 CGAAGCGTCGCCTTAAAAACA 60.070 47.619 14.86 0.0 41.08 2.83 R
2876 5783 1.902938 TCAATTGAACATGGGTCGCA 58.097 45.000 5.45 0.0 0.00 5.10 R
3013 6323 2.260434 GGCGTGAGTTGCGTCCTA 59.740 61.111 0.00 0.0 0.00 2.94 R
4552 9010 0.961753 CCACCTTCTTTGTGCTTCCC 59.038 55.000 0.00 0.0 32.30 3.97 R
5439 10027 0.755698 AGAGATACACCGGTCGCCAT 60.756 55.000 2.59 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.311542 TCTGCAGTCCCAACCCATAATT 59.688 45.455 14.67 0.00 0.00 1.40
34 35 2.689983 CTGCAGTCCCAACCCATAATTC 59.310 50.000 5.25 0.00 0.00 2.17
35 36 2.042297 TGCAGTCCCAACCCATAATTCA 59.958 45.455 0.00 0.00 0.00 2.57
36 37 2.689983 GCAGTCCCAACCCATAATTCAG 59.310 50.000 0.00 0.00 0.00 3.02
37 38 3.624707 GCAGTCCCAACCCATAATTCAGA 60.625 47.826 0.00 0.00 0.00 3.27
38 39 4.202441 CAGTCCCAACCCATAATTCAGAG 58.798 47.826 0.00 0.00 0.00 3.35
126 139 6.363088 CACGCTAAACAACATGTTGAATTGAT 59.637 34.615 38.30 17.05 40.14 2.57
157 185 3.057946 GGTGCCTGTCAAAATGAAGAGAC 60.058 47.826 0.00 0.00 0.00 3.36
226 271 8.470002 GCTTAATCCTGTTTTGACTTGGAATAT 58.530 33.333 0.00 0.00 0.00 1.28
258 303 2.558359 CTCCCAGCTTAACCCTGTTTTG 59.442 50.000 0.00 0.00 0.00 2.44
278 323 3.432378 TGGACTTGGAGTAGACTTCCTC 58.568 50.000 0.00 0.00 0.00 3.71
284 329 5.367060 ACTTGGAGTAGACTTCCTCAACTTT 59.633 40.000 4.73 0.00 0.00 2.66
291 336 4.786425 AGACTTCCTCAACTTTCAGCTTT 58.214 39.130 0.00 0.00 0.00 3.51
293 338 6.357367 AGACTTCCTCAACTTTCAGCTTTAA 58.643 36.000 0.00 0.00 0.00 1.52
294 339 7.001073 AGACTTCCTCAACTTTCAGCTTTAAT 58.999 34.615 0.00 0.00 0.00 1.40
295 340 8.157476 AGACTTCCTCAACTTTCAGCTTTAATA 58.843 33.333 0.00 0.00 0.00 0.98
297 342 8.951243 ACTTCCTCAACTTTCAGCTTTAATATC 58.049 33.333 0.00 0.00 0.00 1.63
299 344 8.498054 TCCTCAACTTTCAGCTTTAATATCTG 57.502 34.615 0.00 0.00 0.00 2.90
300 345 8.321353 TCCTCAACTTTCAGCTTTAATATCTGA 58.679 33.333 0.00 0.00 35.30 3.27
323 467 8.853077 TGATATCTTGTGACATCTGAACTTTT 57.147 30.769 3.98 0.00 28.15 2.27
333 477 9.548208 GTGACATCTGAACTTTTAAATTAGAGC 57.452 33.333 0.00 0.00 0.00 4.09
334 478 9.283768 TGACATCTGAACTTTTAAATTAGAGCA 57.716 29.630 0.00 0.00 0.00 4.26
373 517 5.425941 GCAAGTTGCGTATCTTTTCATTG 57.574 39.130 12.95 0.00 31.71 2.82
374 518 5.153513 GCAAGTTGCGTATCTTTTCATTGA 58.846 37.500 12.95 0.00 31.71 2.57
375 519 5.801947 GCAAGTTGCGTATCTTTTCATTGAT 59.198 36.000 12.95 0.00 31.71 2.57
376 520 6.966632 GCAAGTTGCGTATCTTTTCATTGATA 59.033 34.615 12.95 0.00 31.71 2.15
377 521 7.164826 GCAAGTTGCGTATCTTTTCATTGATAG 59.835 37.037 12.95 0.00 31.71 2.08
378 522 8.390354 CAAGTTGCGTATCTTTTCATTGATAGA 58.610 33.333 0.00 2.59 0.00 1.98
379 523 8.492673 AGTTGCGTATCTTTTCATTGATAGAA 57.507 30.769 3.88 0.00 0.00 2.10
380 524 8.607459 AGTTGCGTATCTTTTCATTGATAGAAG 58.393 33.333 3.88 2.31 0.00 2.85
381 525 7.482654 TGCGTATCTTTTCATTGATAGAAGG 57.517 36.000 3.88 0.00 0.00 3.46
382 526 7.272244 TGCGTATCTTTTCATTGATAGAAGGA 58.728 34.615 3.88 0.00 0.00 3.36
383 527 7.768582 TGCGTATCTTTTCATTGATAGAAGGAA 59.231 33.333 3.88 0.00 0.00 3.36
384 528 8.612619 GCGTATCTTTTCATTGATAGAAGGAAA 58.387 33.333 3.88 0.00 0.00 3.13
392 536 7.849804 TCATTGATAGAAGGAAAGTACAAGC 57.150 36.000 0.00 0.00 0.00 4.01
393 537 7.394016 TCATTGATAGAAGGAAAGTACAAGCA 58.606 34.615 0.00 0.00 0.00 3.91
394 538 7.882791 TCATTGATAGAAGGAAAGTACAAGCAA 59.117 33.333 0.00 0.00 0.00 3.91
395 539 7.672983 TTGATAGAAGGAAAGTACAAGCAAG 57.327 36.000 0.00 0.00 0.00 4.01
396 540 6.173339 TGATAGAAGGAAAGTACAAGCAAGG 58.827 40.000 0.00 0.00 0.00 3.61
397 541 3.756117 AGAAGGAAAGTACAAGCAAGGG 58.244 45.455 0.00 0.00 0.00 3.95
398 542 2.586648 AGGAAAGTACAAGCAAGGGG 57.413 50.000 0.00 0.00 0.00 4.79
399 543 1.780919 AGGAAAGTACAAGCAAGGGGT 59.219 47.619 0.00 0.00 0.00 4.95
400 544 2.177016 AGGAAAGTACAAGCAAGGGGTT 59.823 45.455 0.00 0.00 34.43 4.11
401 545 3.396611 AGGAAAGTACAAGCAAGGGGTTA 59.603 43.478 0.00 0.00 32.48 2.85
402 546 3.504906 GGAAAGTACAAGCAAGGGGTTAC 59.495 47.826 0.00 0.00 32.48 2.50
403 547 3.868619 AAGTACAAGCAAGGGGTTACA 57.131 42.857 0.00 0.00 32.48 2.41
404 548 3.868619 AGTACAAGCAAGGGGTTACAA 57.131 42.857 0.00 0.00 32.48 2.41
405 549 3.483421 AGTACAAGCAAGGGGTTACAAC 58.517 45.455 0.00 0.00 32.48 3.32
406 550 1.314730 ACAAGCAAGGGGTTACAACG 58.685 50.000 0.00 0.00 32.48 4.10
407 551 0.039527 CAAGCAAGGGGTTACAACGC 60.040 55.000 0.79 0.79 40.72 4.84
408 552 0.466555 AAGCAAGGGGTTACAACGCA 60.467 50.000 10.78 0.00 42.95 5.24
409 553 0.251165 AGCAAGGGGTTACAACGCAT 60.251 50.000 10.78 1.25 42.95 4.73
410 554 1.003812 AGCAAGGGGTTACAACGCATA 59.996 47.619 10.78 0.00 42.95 3.14
411 555 1.131693 GCAAGGGGTTACAACGCATAC 59.868 52.381 10.78 0.00 42.95 2.39
412 556 2.428491 CAAGGGGTTACAACGCATACA 58.572 47.619 10.78 0.00 42.95 2.29
413 557 2.814919 CAAGGGGTTACAACGCATACAA 59.185 45.455 10.78 0.00 42.95 2.41
414 558 2.706890 AGGGGTTACAACGCATACAAG 58.293 47.619 10.78 0.00 42.95 3.16
415 559 1.741145 GGGGTTACAACGCATACAAGG 59.259 52.381 10.78 0.00 42.95 3.61
416 560 1.131693 GGGTTACAACGCATACAAGGC 59.868 52.381 4.45 0.00 41.07 4.35
417 561 1.131693 GGTTACAACGCATACAAGGCC 59.868 52.381 0.00 0.00 0.00 5.19
418 562 1.807742 GTTACAACGCATACAAGGCCA 59.192 47.619 5.01 0.00 0.00 5.36
419 563 2.411628 TACAACGCATACAAGGCCAT 57.588 45.000 5.01 0.00 0.00 4.40
420 564 0.810648 ACAACGCATACAAGGCCATG 59.189 50.000 5.01 5.77 0.00 3.66
421 565 0.810648 CAACGCATACAAGGCCATGT 59.189 50.000 18.99 18.99 37.32 3.21
422 566 0.810648 AACGCATACAAGGCCATGTG 59.189 50.000 23.54 17.07 38.37 3.21
423 567 1.064621 CGCATACAAGGCCATGTGC 59.935 57.895 23.54 17.39 40.16 4.57
424 568 1.655885 CGCATACAAGGCCATGTGCA 61.656 55.000 23.54 4.84 43.89 4.57
425 569 0.179129 GCATACAAGGCCATGTGCAC 60.179 55.000 23.54 10.75 43.89 4.57
426 570 1.175654 CATACAAGGCCATGTGCACA 58.824 50.000 24.08 24.08 43.89 4.57
427 571 1.545136 CATACAAGGCCATGTGCACAA 59.455 47.619 25.72 7.59 43.89 3.33
428 572 1.246649 TACAAGGCCATGTGCACAAG 58.753 50.000 25.72 20.04 43.89 3.16
429 573 0.467844 ACAAGGCCATGTGCACAAGA 60.468 50.000 25.72 0.00 43.89 3.02
430 574 0.242825 CAAGGCCATGTGCACAAGAG 59.757 55.000 25.72 16.10 43.89 2.85
431 575 0.896940 AAGGCCATGTGCACAAGAGG 60.897 55.000 25.72 24.76 43.89 3.69
432 576 2.570181 GCCATGTGCACAAGAGGC 59.430 61.111 31.93 31.93 40.77 4.70
433 577 2.270257 GCCATGTGCACAAGAGGCA 61.270 57.895 36.30 13.49 40.09 4.75
434 578 1.601419 GCCATGTGCACAAGAGGCAT 61.601 55.000 36.30 16.37 44.11 4.40
435 579 0.172578 CCATGTGCACAAGAGGCATG 59.827 55.000 25.72 15.24 44.11 4.06
436 580 0.172578 CATGTGCACAAGAGGCATGG 59.827 55.000 25.72 1.34 44.11 3.66
437 581 0.251474 ATGTGCACAAGAGGCATGGT 60.251 50.000 25.72 0.00 44.11 3.55
438 582 0.399833 TGTGCACAAGAGGCATGGTA 59.600 50.000 19.28 0.00 44.11 3.25
439 583 1.202867 TGTGCACAAGAGGCATGGTAA 60.203 47.619 19.28 0.00 44.11 2.85
440 584 1.470098 GTGCACAAGAGGCATGGTAAG 59.530 52.381 13.17 0.00 44.11 2.34
441 585 1.350684 TGCACAAGAGGCATGGTAAGA 59.649 47.619 0.00 0.00 36.11 2.10
442 586 2.224744 TGCACAAGAGGCATGGTAAGAA 60.225 45.455 0.00 0.00 36.11 2.52
443 587 2.819608 GCACAAGAGGCATGGTAAGAAA 59.180 45.455 0.00 0.00 0.00 2.52
444 588 3.119708 GCACAAGAGGCATGGTAAGAAAG 60.120 47.826 0.00 0.00 0.00 2.62
445 589 3.084786 ACAAGAGGCATGGTAAGAAAGC 58.915 45.455 0.00 0.00 0.00 3.51
446 590 2.029838 AGAGGCATGGTAAGAAAGCG 57.970 50.000 0.00 0.00 0.00 4.68
447 591 1.279271 AGAGGCATGGTAAGAAAGCGT 59.721 47.619 0.00 0.00 0.00 5.07
448 592 1.398390 GAGGCATGGTAAGAAAGCGTG 59.602 52.381 0.00 0.00 43.99 5.34
449 593 0.451783 GGCATGGTAAGAAAGCGTGG 59.548 55.000 0.00 0.00 41.90 4.94
450 594 0.451783 GCATGGTAAGAAAGCGTGGG 59.548 55.000 0.00 0.00 41.90 4.61
451 595 1.948611 GCATGGTAAGAAAGCGTGGGA 60.949 52.381 0.00 0.00 41.90 4.37
452 596 2.009774 CATGGTAAGAAAGCGTGGGAG 58.990 52.381 0.00 0.00 38.66 4.30
453 597 0.321298 TGGTAAGAAAGCGTGGGAGC 60.321 55.000 0.00 0.00 37.41 4.70
454 598 0.321298 GGTAAGAAAGCGTGGGAGCA 60.321 55.000 0.00 0.00 40.15 4.26
455 599 1.079503 GTAAGAAAGCGTGGGAGCAG 58.920 55.000 0.00 0.00 40.15 4.24
456 600 0.973632 TAAGAAAGCGTGGGAGCAGA 59.026 50.000 0.00 0.00 40.15 4.26
457 601 0.603975 AAGAAAGCGTGGGAGCAGAC 60.604 55.000 0.00 0.00 40.15 3.51
458 602 1.004440 GAAAGCGTGGGAGCAGACT 60.004 57.895 0.00 0.00 40.15 3.24
459 603 0.246635 GAAAGCGTGGGAGCAGACTA 59.753 55.000 0.00 0.00 40.15 2.59
460 604 0.247736 AAAGCGTGGGAGCAGACTAG 59.752 55.000 0.00 0.00 40.15 2.57
461 605 0.612174 AAGCGTGGGAGCAGACTAGA 60.612 55.000 0.00 0.00 40.15 2.43
462 606 0.396417 AGCGTGGGAGCAGACTAGAT 60.396 55.000 0.00 0.00 40.15 1.98
463 607 0.031449 GCGTGGGAGCAGACTAGATC 59.969 60.000 0.00 0.00 37.05 2.75
464 608 1.393603 CGTGGGAGCAGACTAGATCA 58.606 55.000 0.00 0.00 0.00 2.92
465 609 1.751351 CGTGGGAGCAGACTAGATCAA 59.249 52.381 0.00 0.00 0.00 2.57
466 610 2.166459 CGTGGGAGCAGACTAGATCAAA 59.834 50.000 0.00 0.00 0.00 2.69
467 611 3.736433 CGTGGGAGCAGACTAGATCAAAG 60.736 52.174 0.00 0.00 0.00 2.77
468 612 2.768527 TGGGAGCAGACTAGATCAAAGG 59.231 50.000 0.00 0.00 0.00 3.11
469 613 2.103941 GGGAGCAGACTAGATCAAAGGG 59.896 54.545 0.00 0.00 0.00 3.95
470 614 2.103941 GGAGCAGACTAGATCAAAGGGG 59.896 54.545 0.00 0.00 0.00 4.79
471 615 2.769095 GAGCAGACTAGATCAAAGGGGT 59.231 50.000 0.00 0.00 0.00 4.95
472 616 3.185455 AGCAGACTAGATCAAAGGGGTT 58.815 45.455 0.00 0.00 0.00 4.11
473 617 3.054802 AGCAGACTAGATCAAAGGGGTTG 60.055 47.826 0.00 0.00 38.71 3.77
474 618 3.274288 CAGACTAGATCAAAGGGGTTGC 58.726 50.000 0.00 0.00 37.13 4.17
475 619 3.054802 CAGACTAGATCAAAGGGGTTGCT 60.055 47.826 0.00 0.00 37.13 3.91
476 620 3.198853 AGACTAGATCAAAGGGGTTGCTC 59.801 47.826 0.00 0.00 37.13 4.26
477 621 2.912956 ACTAGATCAAAGGGGTTGCTCA 59.087 45.455 0.00 0.00 35.25 4.26
478 622 2.503895 AGATCAAAGGGGTTGCTCAG 57.496 50.000 0.00 0.00 35.25 3.35
479 623 0.813821 GATCAAAGGGGTTGCTCAGC 59.186 55.000 0.00 0.00 37.13 4.26
480 624 0.613012 ATCAAAGGGGTTGCTCAGCC 60.613 55.000 0.00 0.00 43.15 4.85
485 629 2.203625 GGGTTGCTCAGCCCCAAA 60.204 61.111 10.32 0.00 45.12 3.28
486 630 1.836604 GGGTTGCTCAGCCCCAAAA 60.837 57.895 10.32 0.00 45.12 2.44
487 631 1.406860 GGGTTGCTCAGCCCCAAAAA 61.407 55.000 10.32 0.00 45.12 1.94
488 632 0.249868 GGTTGCTCAGCCCCAAAAAC 60.250 55.000 0.00 0.00 0.00 2.43
489 633 0.752658 GTTGCTCAGCCCCAAAAACT 59.247 50.000 0.00 0.00 0.00 2.66
490 634 1.138859 GTTGCTCAGCCCCAAAAACTT 59.861 47.619 0.00 0.00 0.00 2.66
491 635 2.364002 GTTGCTCAGCCCCAAAAACTTA 59.636 45.455 0.00 0.00 0.00 2.24
492 636 2.888212 TGCTCAGCCCCAAAAACTTAT 58.112 42.857 0.00 0.00 0.00 1.73
493 637 4.040936 TGCTCAGCCCCAAAAACTTATA 57.959 40.909 0.00 0.00 0.00 0.98
494 638 4.609301 TGCTCAGCCCCAAAAACTTATAT 58.391 39.130 0.00 0.00 0.00 0.86
495 639 5.761205 TGCTCAGCCCCAAAAACTTATATA 58.239 37.500 0.00 0.00 0.00 0.86
496 640 6.372931 TGCTCAGCCCCAAAAACTTATATAT 58.627 36.000 0.00 0.00 0.00 0.86
497 641 6.838612 TGCTCAGCCCCAAAAACTTATATATT 59.161 34.615 0.00 0.00 0.00 1.28
498 642 7.344352 TGCTCAGCCCCAAAAACTTATATATTT 59.656 33.333 0.00 0.00 0.00 1.40
499 643 8.204160 GCTCAGCCCCAAAAACTTATATATTTT 58.796 33.333 0.00 0.00 0.00 1.82
584 728 3.446310 TGTCGAGCACACACTTCTTTA 57.554 42.857 0.00 0.00 0.00 1.85
597 741 8.292448 CACACACTTCTTTAATGCTTACAAGAT 58.708 33.333 0.00 0.00 0.00 2.40
622 769 4.566759 TCAGTTTTGCAGCGTGATATCTAC 59.433 41.667 3.98 0.18 0.00 2.59
646 801 1.103803 GGTCACCAGAGCTACGATGA 58.896 55.000 0.00 0.00 39.16 2.92
651 806 2.623416 CACCAGAGCTACGATGATGGTA 59.377 50.000 0.00 0.00 38.97 3.25
660 815 4.021016 GCTACGATGATGGTATTCCCTTCT 60.021 45.833 0.00 0.00 38.06 2.85
673 828 6.268847 GGTATTCCCTTCTCTGTGTATCTGAT 59.731 42.308 0.00 0.00 0.00 2.90
676 831 6.716934 TCCCTTCTCTGTGTATCTGATTAC 57.283 41.667 0.00 0.00 0.00 1.89
713 868 2.359230 GCGGCAAACAGAGGAGCT 60.359 61.111 0.00 0.00 0.00 4.09
731 899 4.681074 AGCTTATTCTTCTAGCTCCACC 57.319 45.455 0.00 0.00 41.15 4.61
733 901 3.181474 GCTTATTCTTCTAGCTCCACCGT 60.181 47.826 0.00 0.00 32.26 4.83
742 910 2.100605 AGCTCCACCGTTTCTGAATC 57.899 50.000 0.00 0.00 0.00 2.52
800 1007 1.148273 TTCTGAGCAGGTTGGCGTT 59.852 52.632 0.00 0.00 39.27 4.84
885 1094 7.284074 TGGTGTTTTCCAGTTCTCTACATTAA 58.716 34.615 0.00 0.00 33.19 1.40
962 1177 4.262036 CCCTTGTTTTTAGAACCCTTCAGC 60.262 45.833 0.00 0.00 0.00 4.26
1019 1239 1.871676 CATGGATCTGCCTTGTCATCG 59.128 52.381 0.00 0.00 37.12 3.84
1396 1637 6.264067 CAGGTTCTCCAACAAGAATTTTCTCT 59.736 38.462 0.00 0.00 37.59 3.10
1423 1664 4.202212 CCACCGTCAATGACCATATACTCA 60.202 45.833 7.91 0.00 0.00 3.41
1483 1730 1.261238 AAGAGCCGACTCCTTCAGGG 61.261 60.000 0.00 0.00 44.65 4.45
1519 1766 1.581934 TCTGAACAACACGGCTCAAG 58.418 50.000 0.00 0.00 0.00 3.02
1696 1949 3.118371 GGATGGTAAGAAAGGTGGTCGAT 60.118 47.826 0.00 0.00 0.00 3.59
1722 1975 0.892755 GGACACGGTGTACCATGAGA 59.107 55.000 14.74 0.00 32.72 3.27
1809 2062 0.521291 CGGCGATCAACAACACCATT 59.479 50.000 0.00 0.00 0.00 3.16
1847 2106 1.071471 CACCCCCACAGTCACAGTC 59.929 63.158 0.00 0.00 0.00 3.51
1848 2107 1.383943 ACCCCCACAGTCACAGTCA 60.384 57.895 0.00 0.00 0.00 3.41
1849 2108 1.071471 CCCCCACAGTCACAGTCAC 59.929 63.158 0.00 0.00 0.00 3.67
1850 2109 1.695114 CCCCCACAGTCACAGTCACA 61.695 60.000 0.00 0.00 0.00 3.58
1851 2110 0.250038 CCCCACAGTCACAGTCACAG 60.250 60.000 0.00 0.00 0.00 3.66
1852 2111 0.882042 CCCACAGTCACAGTCACAGC 60.882 60.000 0.00 0.00 0.00 4.40
1937 2196 9.123902 TCATGGTATGTAAAATTCTCATCCTTG 57.876 33.333 0.00 0.00 0.00 3.61
1938 2197 7.880160 TGGTATGTAAAATTCTCATCCTTGG 57.120 36.000 0.00 0.00 0.00 3.61
2131 3230 9.571810 TGCATGCAACTATTAAAAAGAACATAG 57.428 29.630 20.30 0.00 0.00 2.23
2206 3308 8.958119 ATTCTACATCTATGTTTTTAAGGCGA 57.042 30.769 0.12 0.00 41.97 5.54
2207 3309 7.766219 TCTACATCTATGTTTTTAAGGCGAC 57.234 36.000 0.12 0.00 41.97 5.19
2208 3310 5.464965 ACATCTATGTTTTTAAGGCGACG 57.535 39.130 0.00 0.00 37.90 5.12
2210 3312 3.592059 TCTATGTTTTTAAGGCGACGCT 58.408 40.909 20.77 2.90 0.00 5.07
2211 3313 3.998341 TCTATGTTTTTAAGGCGACGCTT 59.002 39.130 20.77 9.77 0.00 4.68
2266 3823 2.497770 GCCTAAAGCGGACGCCTA 59.502 61.111 13.63 4.63 43.17 3.93
2269 3826 1.591863 CTAAAGCGGACGCCTAGGC 60.592 63.158 24.75 24.75 43.17 3.93
2610 4167 7.065443 GGACGCCTTAAAAACATAGTTCTACAT 59.935 37.037 0.00 0.00 0.00 2.29
2641 4198 6.899393 TCTTTCATGGCAGTTGATTTAGTT 57.101 33.333 0.00 0.00 0.00 2.24
2734 4794 6.411630 TTGTTACGTATGTGGTAGCATTTC 57.588 37.500 0.00 0.00 32.37 2.17
2869 5775 3.403038 AGTCAGAATGGTTCAAAGGTCG 58.597 45.455 0.00 0.00 36.16 4.79
2876 5783 0.109913 GGTTCAAAGGTCGAAGGGGT 59.890 55.000 0.00 0.00 0.00 4.95
2895 5802 1.539388 GTGCGACCCATGTTCAATTGA 59.461 47.619 3.38 3.38 0.00 2.57
2902 5809 6.198966 GCGACCCATGTTCAATTGATTAATTC 59.801 38.462 9.40 0.18 34.34 2.17
3200 6544 5.600908 TTATGTTGTCAGCCTTAACGTTC 57.399 39.130 2.82 0.00 0.00 3.95
3233 6581 7.056006 GTCCCCTTAATTTAGGAACGGAAATA 58.944 38.462 12.13 0.00 37.50 1.40
3607 8038 2.092968 TCCAGTATCCACAATGGCAGTC 60.093 50.000 0.00 0.00 37.47 3.51
3652 8087 3.636300 AGCAACCTACAGTGAAAAATGCA 59.364 39.130 0.00 0.00 33.89 3.96
3657 8092 4.342092 ACCTACAGTGAAAAATGCAAAGCT 59.658 37.500 0.00 0.00 0.00 3.74
3969 8423 4.516321 TGGCATGCTGTTTGCTGTATATAG 59.484 41.667 18.92 0.00 43.37 1.31
4070 8527 0.404040 CTTCCAGGGCCAGTTACCAA 59.596 55.000 6.18 0.00 0.00 3.67
4328 8786 6.360329 CGTTTCATCCGTACTATAAAATGCC 58.640 40.000 0.00 0.00 0.00 4.40
4435 8893 4.946478 ACTATATCTCCACAAGCACTCC 57.054 45.455 0.00 0.00 0.00 3.85
4547 9005 6.263617 AGCAAAAATTTTCAGCACCAATGATT 59.736 30.769 22.54 4.14 0.00 2.57
4552 9010 5.381174 TTTTCAGCACCAATGATTCTCAG 57.619 39.130 0.00 0.00 0.00 3.35
4711 9196 7.800092 AGTATGCATCTGAAGGAATTTACTCT 58.200 34.615 0.19 0.00 0.00 3.24
4873 9358 7.687941 ATATCCATTATTTTGTAGGCCGAAG 57.312 36.000 0.00 0.00 0.00 3.79
5076 9572 2.867368 TGTCGTCGCAATGTTAAACAGT 59.133 40.909 0.00 0.00 0.00 3.55
5087 9583 7.269084 CGCAATGTTAAACAGTGAGAATGTTAG 59.731 37.037 0.00 0.00 46.01 2.34
5096 9592 5.174395 CAGTGAGAATGTTAGTCTTCCAGG 58.826 45.833 0.00 0.00 0.00 4.45
5125 9621 2.973694 TCCGGCATACTTCAACCTAC 57.026 50.000 0.00 0.00 0.00 3.18
5265 9785 4.713553 TGCTTCAGTTGTTGATGGAAGTA 58.286 39.130 0.00 0.00 37.77 2.24
5290 9810 3.677284 ATCAGACAGCAGGCAGGCG 62.677 63.158 0.00 0.00 39.27 5.52
5361 9893 3.000819 TGAAGGATGGCGACCGGT 61.001 61.111 6.92 6.92 0.00 5.28
5437 10025 0.167251 CCGCACCATCGTTTTACACC 59.833 55.000 0.00 0.00 0.00 4.16
5439 10027 1.149987 GCACCATCGTTTTACACCGA 58.850 50.000 0.00 0.00 37.51 4.69
5444 10032 1.003851 ATCGTTTTACACCGATGGCG 58.996 50.000 0.00 0.00 41.86 5.69
5445 10033 0.038435 TCGTTTTACACCGATGGCGA 60.038 50.000 0.00 0.00 40.82 5.54
5447 10035 0.445043 GTTTTACACCGATGGCGACC 59.555 55.000 0.00 0.00 40.82 4.79
5454 10042 2.415843 CGATGGCGACCGGTGTAT 59.584 61.111 14.63 0.00 40.82 2.29
5455 10043 1.660575 CGATGGCGACCGGTGTATC 60.661 63.158 14.63 9.30 40.82 2.24
5456 10044 1.740285 GATGGCGACCGGTGTATCT 59.260 57.895 14.63 0.00 0.00 1.98
5457 10045 0.318784 GATGGCGACCGGTGTATCTC 60.319 60.000 14.63 0.00 0.00 2.75
5459 10047 1.065928 GGCGACCGGTGTATCTCTG 59.934 63.158 14.63 0.00 0.00 3.35
5460 10048 1.664321 GGCGACCGGTGTATCTCTGT 61.664 60.000 14.63 0.00 0.00 3.41
5526 10133 3.690460 ACTGAATCCTGCTGGGTAAAAG 58.310 45.455 10.07 4.06 36.25 2.27
5571 10178 6.295292 GCCTTCCATGTTTTCTTCCAAGTTAT 60.295 38.462 0.00 0.00 0.00 1.89
5588 10307 9.748708 TCCAAGTTATGAAAAGAAACATTTCTG 57.251 29.630 7.62 0.00 46.22 3.02
5596 10315 9.956720 ATGAAAAGAAACATTTCTGTAGAGTTG 57.043 29.630 7.62 0.00 46.22 3.16
5598 10317 9.439537 GAAAAGAAACATTTCTGTAGAGTTGTC 57.560 33.333 7.62 0.00 46.22 3.18
5599 10318 8.506168 AAAGAAACATTTCTGTAGAGTTGTCA 57.494 30.769 7.62 0.00 46.22 3.58
5600 10319 8.682936 AAGAAACATTTCTGTAGAGTTGTCAT 57.317 30.769 7.62 0.00 46.22 3.06
5601 10320 8.092521 AGAAACATTTCTGTAGAGTTGTCATG 57.907 34.615 6.07 0.00 45.27 3.07
5602 10321 7.933577 AGAAACATTTCTGTAGAGTTGTCATGA 59.066 33.333 6.07 0.00 45.27 3.07
5603 10322 8.627208 AAACATTTCTGTAGAGTTGTCATGAT 57.373 30.769 0.00 0.00 33.36 2.45
5604 10323 9.725019 AAACATTTCTGTAGAGTTGTCATGATA 57.275 29.630 0.00 0.00 33.36 2.15
5605 10324 9.725019 AACATTTCTGTAGAGTTGTCATGATAA 57.275 29.630 0.00 0.00 33.36 1.75
5606 10325 9.376075 ACATTTCTGTAGAGTTGTCATGATAAG 57.624 33.333 4.98 0.00 32.49 1.73
5607 10326 9.591792 CATTTCTGTAGAGTTGTCATGATAAGA 57.408 33.333 4.98 0.00 0.00 2.10
5608 10327 8.988064 TTTCTGTAGAGTTGTCATGATAAGAC 57.012 34.615 4.98 3.20 36.55 3.01
5609 10328 7.703058 TCTGTAGAGTTGTCATGATAAGACA 57.297 36.000 4.98 6.97 43.72 3.41
5619 10338 7.381766 TGTCATGATAAGACAAACATGAAGG 57.618 36.000 0.00 0.00 46.39 3.46
5620 10339 7.167535 TGTCATGATAAGACAAACATGAAGGA 58.832 34.615 0.00 0.00 46.39 3.36
5621 10340 7.335171 TGTCATGATAAGACAAACATGAAGGAG 59.665 37.037 0.00 0.00 46.39 3.69
5622 10341 7.550551 GTCATGATAAGACAAACATGAAGGAGA 59.449 37.037 0.00 0.00 46.39 3.71
5623 10342 8.270030 TCATGATAAGACAAACATGAAGGAGAT 58.730 33.333 0.00 0.00 43.56 2.75
5624 10343 8.557864 CATGATAAGACAAACATGAAGGAGATC 58.442 37.037 0.00 0.00 41.45 2.75
5625 10344 7.855375 TGATAAGACAAACATGAAGGAGATCT 58.145 34.615 0.00 0.00 0.00 2.75
5632 10351 6.550854 ACAAACATGAAGGAGATCTTTTTGGA 59.449 34.615 0.00 0.00 35.50 3.53
5667 10386 4.553330 ACGGTCCATAAGTTCATCAACT 57.447 40.909 0.00 0.00 45.43 3.16
5668 10387 4.253685 ACGGTCCATAAGTTCATCAACTG 58.746 43.478 0.00 0.00 42.45 3.16
5687 10406 8.818622 TCAACTGTACTACTCATTGGTACTAT 57.181 34.615 0.00 0.00 37.35 2.12
5743 10462 5.761165 AATTTACGTGGCAAGTTTGTACT 57.239 34.783 12.12 0.00 35.68 2.73
5746 10465 3.414549 ACGTGGCAAGTTTGTACTTTG 57.585 42.857 0.00 0.00 41.85 2.77
5750 10469 4.119136 GTGGCAAGTTTGTACTTTGCATT 58.881 39.130 19.08 0.00 41.85 3.56
5944 11738 5.742453 GCTTGTCTTGATATGTGCAATTCTG 59.258 40.000 0.00 0.00 0.00 3.02
5945 11739 6.403964 GCTTGTCTTGATATGTGCAATTCTGA 60.404 38.462 0.00 0.00 0.00 3.27
5964 11761 9.975218 AATTCTGAGGTATACCAAACAATAAGT 57.025 29.630 23.87 12.64 38.89 2.24
6028 11825 5.922053 TGCAATATAGCATCTCAACTGAGT 58.078 37.500 6.61 0.00 40.26 3.41
6029 11826 7.054491 TGCAATATAGCATCTCAACTGAGTA 57.946 36.000 6.61 0.00 40.26 2.59
6030 11827 6.925718 TGCAATATAGCATCTCAACTGAGTAC 59.074 38.462 6.61 0.00 40.26 2.73
6031 11828 6.367422 GCAATATAGCATCTCAACTGAGTACC 59.633 42.308 6.61 0.00 42.60 3.34
6089 11926 7.956420 ACACTTTATAAACGTCTCAATGTCA 57.044 32.000 0.00 0.00 0.00 3.58
6104 11941 3.514777 GTCATCTGGACACGCTTGA 57.485 52.632 0.00 0.00 46.19 3.02
6123 11962 1.604278 GAGTTGCGCCTCTGAGTTTTT 59.396 47.619 4.18 0.00 0.00 1.94
6142 11981 1.529152 TACACGGTGCATGAGGACGT 61.529 55.000 8.30 0.00 36.89 4.34
6144 11983 2.815211 CGGTGCATGAGGACGTGG 60.815 66.667 0.00 0.00 36.89 4.94
6147 11986 4.758251 TGCATGAGGACGTGGCCG 62.758 66.667 0.00 0.00 40.83 6.13
6165 12004 4.944930 TGGCCGTAAGCACTTTACATAATT 59.055 37.500 0.00 0.00 46.50 1.40
6194 12033 6.936900 ACACACATGTAGGGATGATATTAAGC 59.063 38.462 0.00 0.00 37.26 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.768077 GGGACTGCAGATAGGGGCT 60.768 63.158 23.35 0.00 0.00 5.19
72 84 8.605746 CAAAATTCAATGTTTTCTCTTCAAGCA 58.394 29.630 0.00 0.00 0.00 3.91
126 139 0.687920 TGACAGGCACCGGACAATTA 59.312 50.000 9.46 0.00 0.00 1.40
131 144 0.240945 CATTTTGACAGGCACCGGAC 59.759 55.000 9.46 0.00 0.00 4.79
183 223 6.126854 GGATTAAGCTGGAAGTTTAGGAGGTA 60.127 42.308 0.00 0.00 40.74 3.08
226 271 5.512576 GGTTAAGCTGGGAGTTCAGAAAGTA 60.513 44.000 0.00 0.00 36.93 2.24
258 303 3.432378 TGAGGAAGTCTACTCCAAGTCC 58.568 50.000 2.92 0.00 32.80 3.85
293 338 9.926158 GTTCAGATGTCACAAGATATCAGATAT 57.074 33.333 5.32 2.23 42.80 1.63
294 339 9.140874 AGTTCAGATGTCACAAGATATCAGATA 57.859 33.333 5.32 0.00 42.80 1.98
295 340 8.020777 AGTTCAGATGTCACAAGATATCAGAT 57.979 34.615 5.32 0.00 42.80 2.90
297 342 8.489990 AAAGTTCAGATGTCACAAGATATCAG 57.510 34.615 5.32 0.00 42.80 2.90
337 481 3.799420 GCAACTTGCGTATTGGTGAAAAA 59.201 39.130 0.00 0.00 31.71 1.94
338 482 3.376540 GCAACTTGCGTATTGGTGAAAA 58.623 40.909 0.00 0.00 31.71 2.29
339 483 3.006659 GCAACTTGCGTATTGGTGAAA 57.993 42.857 0.00 0.00 31.71 2.69
340 484 2.697431 GCAACTTGCGTATTGGTGAA 57.303 45.000 0.00 0.00 31.71 3.18
351 495 5.153513 TCAATGAAAAGATACGCAACTTGC 58.846 37.500 3.44 3.44 40.69 4.01
352 496 8.390354 TCTATCAATGAAAAGATACGCAACTTG 58.610 33.333 0.00 0.00 0.00 3.16
353 497 8.492673 TCTATCAATGAAAAGATACGCAACTT 57.507 30.769 0.00 0.00 0.00 2.66
354 498 8.492673 TTCTATCAATGAAAAGATACGCAACT 57.507 30.769 0.44 0.00 0.00 3.16
355 499 7.852945 CCTTCTATCAATGAAAAGATACGCAAC 59.147 37.037 5.36 0.00 0.00 4.17
356 500 7.768582 TCCTTCTATCAATGAAAAGATACGCAA 59.231 33.333 5.36 0.00 0.00 4.85
357 501 7.272244 TCCTTCTATCAATGAAAAGATACGCA 58.728 34.615 5.36 0.00 0.00 5.24
358 502 7.715265 TCCTTCTATCAATGAAAAGATACGC 57.285 36.000 5.36 0.00 0.00 4.42
366 510 8.730680 GCTTGTACTTTCCTTCTATCAATGAAA 58.269 33.333 0.00 0.00 0.00 2.69
367 511 7.882791 TGCTTGTACTTTCCTTCTATCAATGAA 59.117 33.333 0.00 0.00 0.00 2.57
368 512 7.394016 TGCTTGTACTTTCCTTCTATCAATGA 58.606 34.615 0.00 0.00 0.00 2.57
369 513 7.615582 TGCTTGTACTTTCCTTCTATCAATG 57.384 36.000 0.00 0.00 0.00 2.82
370 514 7.337942 CCTTGCTTGTACTTTCCTTCTATCAAT 59.662 37.037 0.00 0.00 0.00 2.57
371 515 6.655003 CCTTGCTTGTACTTTCCTTCTATCAA 59.345 38.462 0.00 0.00 0.00 2.57
372 516 6.173339 CCTTGCTTGTACTTTCCTTCTATCA 58.827 40.000 0.00 0.00 0.00 2.15
373 517 5.586643 CCCTTGCTTGTACTTTCCTTCTATC 59.413 44.000 0.00 0.00 0.00 2.08
374 518 5.501156 CCCTTGCTTGTACTTTCCTTCTAT 58.499 41.667 0.00 0.00 0.00 1.98
375 519 4.263331 CCCCTTGCTTGTACTTTCCTTCTA 60.263 45.833 0.00 0.00 0.00 2.10
376 520 3.498661 CCCCTTGCTTGTACTTTCCTTCT 60.499 47.826 0.00 0.00 0.00 2.85
377 521 2.820197 CCCCTTGCTTGTACTTTCCTTC 59.180 50.000 0.00 0.00 0.00 3.46
378 522 2.177016 ACCCCTTGCTTGTACTTTCCTT 59.823 45.455 0.00 0.00 0.00 3.36
379 523 1.780919 ACCCCTTGCTTGTACTTTCCT 59.219 47.619 0.00 0.00 0.00 3.36
380 524 2.287977 ACCCCTTGCTTGTACTTTCC 57.712 50.000 0.00 0.00 0.00 3.13
381 525 4.139038 TGTAACCCCTTGCTTGTACTTTC 58.861 43.478 0.00 0.00 0.00 2.62
382 526 4.173290 TGTAACCCCTTGCTTGTACTTT 57.827 40.909 0.00 0.00 0.00 2.66
383 527 3.868619 TGTAACCCCTTGCTTGTACTT 57.131 42.857 0.00 0.00 0.00 2.24
384 528 3.483421 GTTGTAACCCCTTGCTTGTACT 58.517 45.455 0.00 0.00 0.00 2.73
385 529 2.224784 CGTTGTAACCCCTTGCTTGTAC 59.775 50.000 0.00 0.00 0.00 2.90
386 530 2.496111 CGTTGTAACCCCTTGCTTGTA 58.504 47.619 0.00 0.00 0.00 2.41
387 531 1.314730 CGTTGTAACCCCTTGCTTGT 58.685 50.000 0.00 0.00 0.00 3.16
388 532 0.039527 GCGTTGTAACCCCTTGCTTG 60.040 55.000 0.00 0.00 0.00 4.01
389 533 0.466555 TGCGTTGTAACCCCTTGCTT 60.467 50.000 0.00 0.00 0.00 3.91
390 534 0.251165 ATGCGTTGTAACCCCTTGCT 60.251 50.000 0.00 0.00 0.00 3.91
391 535 1.131693 GTATGCGTTGTAACCCCTTGC 59.868 52.381 0.00 0.00 0.00 4.01
392 536 2.428491 TGTATGCGTTGTAACCCCTTG 58.572 47.619 0.00 0.00 0.00 3.61
393 537 2.863132 TGTATGCGTTGTAACCCCTT 57.137 45.000 0.00 0.00 0.00 3.95
394 538 2.617021 CCTTGTATGCGTTGTAACCCCT 60.617 50.000 0.00 0.00 0.00 4.79
395 539 1.741145 CCTTGTATGCGTTGTAACCCC 59.259 52.381 0.00 0.00 0.00 4.95
396 540 1.131693 GCCTTGTATGCGTTGTAACCC 59.868 52.381 0.00 0.00 0.00 4.11
397 541 1.131693 GGCCTTGTATGCGTTGTAACC 59.868 52.381 0.00 0.00 0.00 2.85
398 542 1.807742 TGGCCTTGTATGCGTTGTAAC 59.192 47.619 3.32 0.00 0.00 2.50
399 543 2.186532 TGGCCTTGTATGCGTTGTAA 57.813 45.000 3.32 0.00 0.00 2.41
400 544 2.013400 CATGGCCTTGTATGCGTTGTA 58.987 47.619 10.48 0.00 0.00 2.41
401 545 0.810648 CATGGCCTTGTATGCGTTGT 59.189 50.000 10.48 0.00 0.00 3.32
402 546 0.810648 ACATGGCCTTGTATGCGTTG 59.189 50.000 22.02 0.00 0.00 4.10
403 547 0.810648 CACATGGCCTTGTATGCGTT 59.189 50.000 22.76 0.00 0.00 4.84
404 548 1.656818 GCACATGGCCTTGTATGCGT 61.657 55.000 22.76 0.00 36.11 5.24
405 549 1.064621 GCACATGGCCTTGTATGCG 59.935 57.895 22.76 12.32 36.11 4.73
406 550 0.179129 GTGCACATGGCCTTGTATGC 60.179 55.000 22.76 21.73 43.89 3.14
407 551 1.175654 TGTGCACATGGCCTTGTATG 58.824 50.000 22.76 13.39 43.89 2.39
408 552 1.820519 CTTGTGCACATGGCCTTGTAT 59.179 47.619 22.39 0.00 43.89 2.29
409 553 1.202867 TCTTGTGCACATGGCCTTGTA 60.203 47.619 26.93 7.03 43.89 2.41
410 554 0.467844 TCTTGTGCACATGGCCTTGT 60.468 50.000 26.93 18.18 43.89 3.16
411 555 0.242825 CTCTTGTGCACATGGCCTTG 59.757 55.000 26.93 16.76 43.89 3.61
412 556 0.896940 CCTCTTGTGCACATGGCCTT 60.897 55.000 26.93 0.00 43.89 4.35
413 557 1.303888 CCTCTTGTGCACATGGCCT 60.304 57.895 26.93 0.00 43.89 5.19
414 558 2.998279 GCCTCTTGTGCACATGGCC 61.998 63.158 31.66 20.79 43.89 5.36
415 559 1.601419 ATGCCTCTTGTGCACATGGC 61.601 55.000 33.40 33.40 42.38 4.40
416 560 0.172578 CATGCCTCTTGTGCACATGG 59.827 55.000 26.93 24.36 42.38 3.66
417 561 0.172578 CCATGCCTCTTGTGCACATG 59.827 55.000 22.39 22.81 42.38 3.21
418 562 0.251474 ACCATGCCTCTTGTGCACAT 60.251 50.000 22.39 0.00 42.38 3.21
419 563 0.399833 TACCATGCCTCTTGTGCACA 59.600 50.000 17.42 17.42 42.38 4.57
420 564 1.470098 CTTACCATGCCTCTTGTGCAC 59.530 52.381 10.75 10.75 42.38 4.57
421 565 1.350684 TCTTACCATGCCTCTTGTGCA 59.649 47.619 0.00 0.00 43.97 4.57
422 566 2.113860 TCTTACCATGCCTCTTGTGC 57.886 50.000 0.00 0.00 0.00 4.57
423 567 3.119708 GCTTTCTTACCATGCCTCTTGTG 60.120 47.826 0.00 0.00 0.00 3.33
424 568 3.084786 GCTTTCTTACCATGCCTCTTGT 58.915 45.455 0.00 0.00 0.00 3.16
425 569 2.096496 CGCTTTCTTACCATGCCTCTTG 59.904 50.000 0.00 0.00 0.00 3.02
426 570 2.290323 ACGCTTTCTTACCATGCCTCTT 60.290 45.455 0.00 0.00 0.00 2.85
427 571 1.279271 ACGCTTTCTTACCATGCCTCT 59.721 47.619 0.00 0.00 0.00 3.69
428 572 1.398390 CACGCTTTCTTACCATGCCTC 59.602 52.381 0.00 0.00 0.00 4.70
429 573 1.453155 CACGCTTTCTTACCATGCCT 58.547 50.000 0.00 0.00 0.00 4.75
430 574 0.451783 CCACGCTTTCTTACCATGCC 59.548 55.000 0.00 0.00 0.00 4.40
431 575 0.451783 CCCACGCTTTCTTACCATGC 59.548 55.000 0.00 0.00 0.00 4.06
432 576 2.009774 CTCCCACGCTTTCTTACCATG 58.990 52.381 0.00 0.00 0.00 3.66
433 577 1.679032 GCTCCCACGCTTTCTTACCAT 60.679 52.381 0.00 0.00 0.00 3.55
434 578 0.321298 GCTCCCACGCTTTCTTACCA 60.321 55.000 0.00 0.00 0.00 3.25
435 579 0.321298 TGCTCCCACGCTTTCTTACC 60.321 55.000 0.00 0.00 0.00 2.85
436 580 1.079503 CTGCTCCCACGCTTTCTTAC 58.920 55.000 0.00 0.00 0.00 2.34
437 581 0.973632 TCTGCTCCCACGCTTTCTTA 59.026 50.000 0.00 0.00 0.00 2.10
438 582 0.603975 GTCTGCTCCCACGCTTTCTT 60.604 55.000 0.00 0.00 0.00 2.52
439 583 1.004440 GTCTGCTCCCACGCTTTCT 60.004 57.895 0.00 0.00 0.00 2.52
440 584 0.246635 TAGTCTGCTCCCACGCTTTC 59.753 55.000 0.00 0.00 0.00 2.62
441 585 0.247736 CTAGTCTGCTCCCACGCTTT 59.752 55.000 0.00 0.00 0.00 3.51
442 586 0.612174 TCTAGTCTGCTCCCACGCTT 60.612 55.000 0.00 0.00 0.00 4.68
443 587 0.396417 ATCTAGTCTGCTCCCACGCT 60.396 55.000 0.00 0.00 0.00 5.07
444 588 0.031449 GATCTAGTCTGCTCCCACGC 59.969 60.000 0.00 0.00 0.00 5.34
445 589 1.393603 TGATCTAGTCTGCTCCCACG 58.606 55.000 0.00 0.00 0.00 4.94
446 590 3.431486 CCTTTGATCTAGTCTGCTCCCAC 60.431 52.174 0.00 0.00 0.00 4.61
447 591 2.768527 CCTTTGATCTAGTCTGCTCCCA 59.231 50.000 0.00 0.00 0.00 4.37
448 592 2.103941 CCCTTTGATCTAGTCTGCTCCC 59.896 54.545 0.00 0.00 0.00 4.30
449 593 2.103941 CCCCTTTGATCTAGTCTGCTCC 59.896 54.545 0.00 0.00 0.00 4.70
450 594 2.769095 ACCCCTTTGATCTAGTCTGCTC 59.231 50.000 0.00 0.00 0.00 4.26
451 595 2.839228 ACCCCTTTGATCTAGTCTGCT 58.161 47.619 0.00 0.00 0.00 4.24
452 596 3.274288 CAACCCCTTTGATCTAGTCTGC 58.726 50.000 0.00 0.00 37.39 4.26
453 597 3.054802 AGCAACCCCTTTGATCTAGTCTG 60.055 47.826 0.00 0.00 37.39 3.51
454 598 3.185455 AGCAACCCCTTTGATCTAGTCT 58.815 45.455 0.00 0.00 37.39 3.24
455 599 3.536570 GAGCAACCCCTTTGATCTAGTC 58.463 50.000 0.00 0.00 45.57 2.59
456 600 3.636153 GAGCAACCCCTTTGATCTAGT 57.364 47.619 0.00 0.00 45.57 2.57
461 605 0.613012 GGCTGAGCAACCCCTTTGAT 60.613 55.000 6.82 0.00 37.39 2.57
462 606 1.228552 GGCTGAGCAACCCCTTTGA 60.229 57.895 6.82 0.00 37.39 2.69
463 607 2.278330 GGGCTGAGCAACCCCTTTG 61.278 63.158 6.82 0.00 40.56 2.77
464 608 2.118294 GGGCTGAGCAACCCCTTT 59.882 61.111 6.82 0.00 40.56 3.11
468 612 1.406860 TTTTTGGGGCTGAGCAACCC 61.407 55.000 11.37 11.37 46.24 4.11
469 613 0.249868 GTTTTTGGGGCTGAGCAACC 60.250 55.000 6.82 8.73 0.00 3.77
470 614 0.752658 AGTTTTTGGGGCTGAGCAAC 59.247 50.000 6.82 0.37 0.00 4.17
471 615 1.494960 AAGTTTTTGGGGCTGAGCAA 58.505 45.000 6.82 0.00 0.00 3.91
472 616 2.373335 TAAGTTTTTGGGGCTGAGCA 57.627 45.000 6.82 0.00 0.00 4.26
473 617 6.901081 ATATATAAGTTTTTGGGGCTGAGC 57.099 37.500 0.00 0.00 0.00 4.26
584 728 6.985645 TGCAAAACTGAAATCTTGTAAGCATT 59.014 30.769 0.00 0.00 0.00 3.56
597 741 4.455533 AGATATCACGCTGCAAAACTGAAA 59.544 37.500 5.32 0.00 0.00 2.69
622 769 1.737029 CGTAGCTCTGGTGACCATGTG 60.737 57.143 4.03 1.89 30.82 3.21
646 801 6.042552 CAGATACACAGAGAAGGGAATACCAT 59.957 42.308 0.00 0.00 43.89 3.55
651 806 6.821616 AATCAGATACACAGAGAAGGGAAT 57.178 37.500 0.00 0.00 0.00 3.01
660 815 4.342378 GGAGCTGGTAATCAGATACACAGA 59.658 45.833 0.00 0.00 42.92 3.41
673 828 2.656069 GGCCGTCAGGAGCTGGTAA 61.656 63.158 0.00 0.00 41.02 2.85
698 853 3.615155 AGAATAAGCTCCTCTGTTTGCC 58.385 45.455 0.00 0.00 0.00 4.52
713 868 5.187186 AGAAACGGTGGAGCTAGAAGAATAA 59.813 40.000 0.00 0.00 0.00 1.40
731 899 6.541086 CAAGAATTCTCAGGATTCAGAAACG 58.459 40.000 8.78 0.00 32.40 3.60
733 901 5.416952 GGCAAGAATTCTCAGGATTCAGAAA 59.583 40.000 8.78 0.00 32.40 2.52
742 910 1.830279 TGCTGGCAAGAATTCTCAGG 58.170 50.000 19.01 9.94 0.00 3.86
812 1019 6.425114 CCCAAGTTATAAACTCTGGATCATCG 59.575 42.308 16.11 0.00 41.91 3.84
962 1177 5.724328 TGATAGCCAGTGAACTTGTAGAAG 58.276 41.667 0.00 0.00 35.07 2.85
1019 1239 1.620822 GATAACCATGGCCATCCACC 58.379 55.000 17.61 0.00 46.92 4.61
1396 1637 1.373435 GGTCATTGACGGTGGTGGA 59.627 57.895 10.56 0.00 32.65 4.02
1423 1664 4.333913 AGCTCTCGATGCTAACAATGAT 57.666 40.909 10.74 0.00 39.21 2.45
1483 1730 2.607635 TCAGAAGCGTGAACAACAAGAC 59.392 45.455 0.00 0.00 0.00 3.01
1696 1949 0.968405 GTACACCGTGTCCCCAGTAA 59.032 55.000 7.63 0.00 0.00 2.24
1722 1975 6.935240 TGGAAGAATGGGAATATCTCGTAT 57.065 37.500 0.00 0.00 0.00 3.06
1849 2108 4.988598 AACCGGCGACTGTGGCTG 62.989 66.667 15.68 15.68 36.53 4.85
1850 2109 4.988598 CAACCGGCGACTGTGGCT 62.989 66.667 9.30 0.00 0.00 4.75
1897 2156 0.890683 CCATGAAGTTCTTGGGTGGC 59.109 55.000 23.91 0.00 37.86 5.01
1937 2196 2.044946 AACCAAGGATCTGCCGCC 60.045 61.111 0.00 0.00 43.43 6.13
1938 2197 2.409870 CCAACCAAGGATCTGCCGC 61.410 63.158 0.00 0.00 43.43 6.53
2181 3283 8.827677 GTCGCCTTAAAAACATAGATGTAGAAT 58.172 33.333 0.00 0.00 40.80 2.40
2182 3284 7.009815 CGTCGCCTTAAAAACATAGATGTAGAA 59.990 37.037 0.00 0.00 40.80 2.10
2183 3285 6.474427 CGTCGCCTTAAAAACATAGATGTAGA 59.526 38.462 0.00 0.00 40.80 2.59
2184 3286 6.637365 CGTCGCCTTAAAAACATAGATGTAG 58.363 40.000 0.00 0.00 40.80 2.74
2185 3287 5.005971 GCGTCGCCTTAAAAACATAGATGTA 59.994 40.000 5.75 0.00 40.80 2.29
2186 3288 4.201783 GCGTCGCCTTAAAAACATAGATGT 60.202 41.667 5.75 0.00 44.20 3.06
2187 3289 4.034048 AGCGTCGCCTTAAAAACATAGATG 59.966 41.667 14.86 0.00 0.00 2.90
2188 3290 4.189231 AGCGTCGCCTTAAAAACATAGAT 58.811 39.130 14.86 0.00 0.00 1.98
2189 3291 3.592059 AGCGTCGCCTTAAAAACATAGA 58.408 40.909 14.86 0.00 0.00 1.98
2191 3293 3.181528 CGAAGCGTCGCCTTAAAAACATA 60.182 43.478 14.86 0.00 41.08 2.29
2192 3294 2.412325 CGAAGCGTCGCCTTAAAAACAT 60.412 45.455 14.86 0.00 41.08 2.71
2193 3295 1.070443 CGAAGCGTCGCCTTAAAAACA 60.070 47.619 14.86 0.00 41.08 2.83
2194 3296 1.587991 CGAAGCGTCGCCTTAAAAAC 58.412 50.000 14.86 0.00 41.08 2.43
2213 3315 3.140814 CCCCCAGCGCCTTAAAGC 61.141 66.667 2.29 0.00 0.00 3.51
2249 3806 1.591863 CTAGGCGTCCGCTTTAGGC 60.592 63.158 11.82 0.00 41.60 3.93
2252 3809 2.497770 GCCTAGGCGTCCGCTTTA 59.502 61.111 20.16 4.28 41.60 1.85
2581 4138 4.819769 ACTATGTTTTTAAGGCGTCCGTA 58.180 39.130 0.00 0.00 0.00 4.02
2582 4139 3.667360 ACTATGTTTTTAAGGCGTCCGT 58.333 40.909 0.00 0.00 0.00 4.69
2583 4140 4.390909 AGAACTATGTTTTTAAGGCGTCCG 59.609 41.667 0.00 0.00 0.00 4.79
2584 4141 5.874895 AGAACTATGTTTTTAAGGCGTCC 57.125 39.130 0.00 0.00 0.00 4.79
2585 4142 7.355332 TGTAGAACTATGTTTTTAAGGCGTC 57.645 36.000 0.00 0.00 0.00 5.19
2586 4143 7.916914 ATGTAGAACTATGTTTTTAAGGCGT 57.083 32.000 0.00 0.00 0.00 5.68
2641 4198 3.997762 AGTGGACATTGCAACTACGTAA 58.002 40.909 0.00 0.00 0.00 3.18
2734 4794 7.990917 TCTTAAGCTCATGTCTACTTGTCTAG 58.009 38.462 0.00 0.00 0.00 2.43
2821 4881 9.525826 CTAGCATCTTTCCCCTTATCAATAAAT 57.474 33.333 0.00 0.00 0.00 1.40
2876 5783 1.902938 TCAATTGAACATGGGTCGCA 58.097 45.000 5.45 0.00 0.00 5.10
2895 5802 7.718753 GGATCATCTCACTCAACCAGAATTAAT 59.281 37.037 0.00 0.00 0.00 1.40
2902 5809 3.055602 TGTGGATCATCTCACTCAACCAG 60.056 47.826 7.52 0.00 35.15 4.00
3013 6323 2.260434 GGCGTGAGTTGCGTCCTA 59.740 61.111 0.00 0.00 0.00 2.94
3200 6544 6.895782 TCCTAAATTAAGGGGACACACATAG 58.104 40.000 0.00 0.00 37.24 2.23
3233 6581 4.466827 TCATGGCAGCTTGATCATGTAAT 58.533 39.130 10.05 0.00 38.39 1.89
3535 7952 7.759489 ACAAAACTAGGAAAATCATAGCACA 57.241 32.000 0.00 0.00 34.38 4.57
3607 8038 7.094032 TGCTAGTACAGGATGAGTGATATGATG 60.094 40.741 0.00 0.00 39.69 3.07
3657 8092 5.929415 TCGATAATATAATGGAAAGCGTGCA 59.071 36.000 0.00 0.00 0.00 4.57
3969 8423 4.284829 TCCATGGGAAAAGGAATTTTGC 57.715 40.909 13.02 0.00 0.00 3.68
4070 8527 7.442062 CCTTTTAACTGCAATTTCTGTTCCATT 59.558 33.333 3.80 0.00 31.90 3.16
4328 8786 2.983907 ACATCTGCACATGAGAGAGG 57.016 50.000 9.11 1.63 0.00 3.69
4417 8875 1.414181 CGGGAGTGCTTGTGGAGATAT 59.586 52.381 0.00 0.00 0.00 1.63
4435 8893 1.351707 GTGTATGATGCGCAACCGG 59.648 57.895 17.11 0.00 34.32 5.28
4547 9005 2.224621 CCTTCTTTGTGCTTCCCTGAGA 60.225 50.000 0.00 0.00 0.00 3.27
4552 9010 0.961753 CCACCTTCTTTGTGCTTCCC 59.038 55.000 0.00 0.00 32.30 3.97
4873 9358 9.696917 AGAATTTATCAACATGAAAAAGGTGAC 57.303 29.630 0.00 0.00 0.00 3.67
5076 9572 3.055094 GCCCTGGAAGACTAACATTCTCA 60.055 47.826 0.00 0.00 34.07 3.27
5087 9583 2.644676 GATGTTTAGGCCCTGGAAGAC 58.355 52.381 0.00 0.00 34.07 3.01
5125 9621 3.838244 TTCATCTTCCTTGGATACCCG 57.162 47.619 0.00 0.00 34.29 5.28
5265 9785 1.406614 GCCTGCTGTCTGATTGCTAGT 60.407 52.381 0.00 0.00 0.00 2.57
5290 9810 2.028020 CCTAGTTCACTTGACCTGGTCC 60.028 54.545 23.42 6.63 0.00 4.46
5361 9893 3.427098 CGAACAACCGCTACAGAGATACA 60.427 47.826 0.00 0.00 0.00 2.29
5437 10025 1.660575 GATACACCGGTCGCCATCG 60.661 63.158 2.59 0.00 0.00 3.84
5439 10027 0.755698 AGAGATACACCGGTCGCCAT 60.756 55.000 2.59 0.00 0.00 4.40
5444 10032 3.543665 AGTCTACAGAGATACACCGGTC 58.456 50.000 2.59 0.00 33.14 4.79
5445 10033 3.648507 AGTCTACAGAGATACACCGGT 57.351 47.619 0.00 0.00 33.14 5.28
5447 10035 5.562506 TTCAAGTCTACAGAGATACACCG 57.437 43.478 0.00 0.00 33.14 4.94
5449 10037 7.548097 TGGATTTCAAGTCTACAGAGATACAC 58.452 38.462 0.00 0.00 33.14 2.90
5454 10042 6.270000 TCCTTTGGATTTCAAGTCTACAGAGA 59.730 38.462 0.00 0.00 36.62 3.10
5455 10043 6.467677 TCCTTTGGATTTCAAGTCTACAGAG 58.532 40.000 0.00 0.00 36.62 3.35
5456 10044 6.433847 TCCTTTGGATTTCAAGTCTACAGA 57.566 37.500 0.00 0.00 36.62 3.41
5571 10178 8.956426 ACAACTCTACAGAAATGTTTCTTTTCA 58.044 29.630 5.30 0.00 44.70 2.69
5579 10298 9.725019 TTATCATGACAACTCTACAGAAATGTT 57.275 29.630 0.00 0.00 0.00 2.71
5580 10299 9.376075 CTTATCATGACAACTCTACAGAAATGT 57.624 33.333 0.00 0.00 0.00 2.71
5596 10315 7.550551 TCTCCTTCATGTTTGTCTTATCATGAC 59.449 37.037 0.00 0.00 43.74 3.06
5598 10317 7.854557 TCTCCTTCATGTTTGTCTTATCATG 57.145 36.000 0.00 0.00 38.96 3.07
5599 10318 8.492782 AGATCTCCTTCATGTTTGTCTTATCAT 58.507 33.333 0.00 0.00 0.00 2.45
5600 10319 7.855375 AGATCTCCTTCATGTTTGTCTTATCA 58.145 34.615 0.00 0.00 0.00 2.15
5601 10320 8.729805 AAGATCTCCTTCATGTTTGTCTTATC 57.270 34.615 0.00 0.00 0.00 1.75
5602 10321 9.525826 AAAAGATCTCCTTCATGTTTGTCTTAT 57.474 29.630 0.00 0.00 33.02 1.73
5603 10322 8.924511 AAAAGATCTCCTTCATGTTTGTCTTA 57.075 30.769 0.00 0.00 33.02 2.10
5604 10323 7.830099 AAAAGATCTCCTTCATGTTTGTCTT 57.170 32.000 0.00 0.00 33.02 3.01
5605 10324 7.255730 CCAAAAAGATCTCCTTCATGTTTGTCT 60.256 37.037 0.00 0.00 31.65 3.41
5606 10325 6.865205 CCAAAAAGATCTCCTTCATGTTTGTC 59.135 38.462 0.00 0.00 31.65 3.18
5607 10326 6.550854 TCCAAAAAGATCTCCTTCATGTTTGT 59.449 34.615 0.00 0.00 31.65 2.83
5608 10327 6.985117 TCCAAAAAGATCTCCTTCATGTTTG 58.015 36.000 0.00 0.00 33.02 2.93
5609 10328 7.601705 TTCCAAAAAGATCTCCTTCATGTTT 57.398 32.000 0.00 0.00 33.02 2.83
5610 10329 7.787623 ATTCCAAAAAGATCTCCTTCATGTT 57.212 32.000 0.00 0.00 33.02 2.71
5611 10330 7.787623 AATTCCAAAAAGATCTCCTTCATGT 57.212 32.000 0.00 0.00 33.02 3.21
5614 10333 8.971073 GGATAAATTCCAAAAAGATCTCCTTCA 58.029 33.333 0.00 0.00 44.74 3.02
5632 10351 4.497291 TGGACCGTTAGCAGGATAAATT 57.503 40.909 0.00 0.00 0.00 1.82
5829 10548 5.819991 AGGTCATCATATTTGGTCTGTTGT 58.180 37.500 0.00 0.00 0.00 3.32
5935 11729 5.565509 TGTTTGGTATACCTCAGAATTGCA 58.434 37.500 22.41 5.94 36.82 4.08
6004 11801 5.757320 ACTCAGTTGAGATGCTATATTGCAC 59.243 40.000 14.10 8.45 44.21 4.57
6005 11802 5.922053 ACTCAGTTGAGATGCTATATTGCA 58.078 37.500 14.17 14.17 44.74 4.08
6025 11822 3.810941 TGTTTTGGTCGATGTTGGTACTC 59.189 43.478 0.00 0.00 0.00 2.59
6026 11823 3.811083 TGTTTTGGTCGATGTTGGTACT 58.189 40.909 0.00 0.00 0.00 2.73
6028 11825 4.647611 AGATGTTTTGGTCGATGTTGGTA 58.352 39.130 0.00 0.00 0.00 3.25
6029 11826 3.486383 AGATGTTTTGGTCGATGTTGGT 58.514 40.909 0.00 0.00 0.00 3.67
6030 11827 5.818136 ATAGATGTTTTGGTCGATGTTGG 57.182 39.130 0.00 0.00 0.00 3.77
6031 11828 6.254804 TCGTATAGATGTTTTGGTCGATGTTG 59.745 38.462 0.00 0.00 0.00 3.33
6089 11926 1.800805 CAACTCAAGCGTGTCCAGAT 58.199 50.000 0.00 0.00 0.00 2.90
6104 11941 1.680338 AAAAACTCAGAGGCGCAACT 58.320 45.000 10.83 4.48 0.00 3.16
6123 11962 1.214325 CGTCCTCATGCACCGTGTA 59.786 57.895 0.00 0.00 0.00 2.90
6142 11981 2.483014 ATGTAAAGTGCTTACGGCCA 57.517 45.000 2.24 0.00 42.57 5.36
6144 11983 7.242914 AGTAATTATGTAAAGTGCTTACGGC 57.757 36.000 0.00 0.00 42.57 5.68
6173 12012 6.211584 AGACGCTTAATATCATCCCTACATGT 59.788 38.462 2.69 2.69 0.00 3.21
6187 12026 7.210174 ACATTATCTGCTGAAGACGCTTAATA 58.790 34.615 0.00 0.00 37.88 0.98
6193 12032 3.183373 GCTACATTATCTGCTGAAGACGC 59.817 47.826 0.00 0.00 37.88 5.19
6194 12033 3.423536 CGCTACATTATCTGCTGAAGACG 59.576 47.826 0.00 0.00 37.88 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.