Multiple sequence alignment - TraesCS3A01G493400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G493400 chr3A 100.000 2549 0 0 1 2549 719845888 719848436 0.000000e+00 4708.0
1 TraesCS3A01G493400 chr3A 95.917 1151 29 4 567 1715 735555335 735556469 0.000000e+00 1849.0
2 TraesCS3A01G493400 chr3A 97.611 837 17 1 1716 2549 683236507 683235671 0.000000e+00 1432.0
3 TraesCS3A01G493400 chr2A 97.323 1980 51 2 571 2549 764220189 764222167 0.000000e+00 3362.0
4 TraesCS3A01G493400 chr2A 96.369 1983 51 5 568 2549 6302715 6300753 0.000000e+00 3243.0
5 TraesCS3A01G493400 chr2A 96.853 1144 32 2 572 1715 771778419 771779558 0.000000e+00 1910.0
6 TraesCS3A01G493400 chr2A 97.365 835 21 1 1716 2549 744583163 744583997 0.000000e+00 1419.0
7 TraesCS3A01G493400 chr7A 96.971 1981 56 3 572 2549 18189930 18191909 0.000000e+00 3323.0
8 TraesCS3A01G493400 chr7A 96.864 1148 29 2 572 1715 49208210 49209354 0.000000e+00 1914.0
9 TraesCS3A01G493400 chr7A 96.157 1145 29 2 571 1715 689996370 689995241 0.000000e+00 1857.0
10 TraesCS3A01G493400 chr7A 96.066 1144 30 2 572 1715 150203038 150201910 0.000000e+00 1849.0
11 TraesCS3A01G493400 chr7A 91.906 1149 41 14 571 1715 36946199 36947299 0.000000e+00 1559.0
12 TraesCS3A01G493400 chr7A 97.964 835 15 2 1716 2549 49209387 49210220 0.000000e+00 1447.0
13 TraesCS3A01G493400 chr5A 95.941 2020 45 19 563 2549 563443921 563445936 0.000000e+00 3241.0
14 TraesCS3A01G493400 chr5A 93.939 924 37 4 795 1715 36351239 36352146 0.000000e+00 1378.0
15 TraesCS3A01G493400 chr7B 95.648 1149 32 12 569 1715 1776634 1775502 0.000000e+00 1829.0
16 TraesCS3A01G493400 chr7B 77.358 212 41 6 109 317 7340718 7340925 4.450000e-23 119.0
17 TraesCS3A01G493400 chr7B 100.000 38 0 0 382 419 366825403 366825366 1.270000e-08 71.3
18 TraesCS3A01G493400 chr6A 97.156 879 22 2 1671 2549 14689817 14688942 0.000000e+00 1482.0
19 TraesCS3A01G493400 chr6A 97.500 40 0 1 382 421 1452240 1452202 1.640000e-07 67.6
20 TraesCS3A01G493400 chr1A 97.368 836 20 2 1716 2549 50512285 50513120 0.000000e+00 1421.0
21 TraesCS3A01G493400 chr3B 84.471 425 59 6 1 422 789149617 789150037 1.820000e-111 412.0
22 TraesCS3A01G493400 chr3D 84.309 427 57 9 1 422 590164942 590165363 2.360000e-110 409.0
23 TraesCS3A01G493400 chr7D 80.172 232 38 7 90 317 43223809 43223582 1.570000e-37 167.0
24 TraesCS3A01G493400 chr1D 77.895 285 51 11 58 337 25365189 25364912 1.570000e-37 167.0
25 TraesCS3A01G493400 chr1D 97.561 41 0 1 531 571 92413871 92413910 4.550000e-08 69.4
26 TraesCS3A01G493400 chr6D 79.079 239 47 2 58 293 305186240 305186002 7.300000e-36 161.0
27 TraesCS3A01G493400 chr1B 78.195 266 47 8 58 317 168338961 168338701 2.620000e-35 159.0
28 TraesCS3A01G493400 chrUn 80.628 191 30 5 129 317 86347649 86347834 9.510000e-30 141.0
29 TraesCS3A01G493400 chr4B 77.500 240 45 8 58 292 656969190 656968955 4.420000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G493400 chr3A 719845888 719848436 2548 False 4708.0 4708 100.000 1 2549 1 chr3A.!!$F1 2548
1 TraesCS3A01G493400 chr3A 735555335 735556469 1134 False 1849.0 1849 95.917 567 1715 1 chr3A.!!$F2 1148
2 TraesCS3A01G493400 chr3A 683235671 683236507 836 True 1432.0 1432 97.611 1716 2549 1 chr3A.!!$R1 833
3 TraesCS3A01G493400 chr2A 764220189 764222167 1978 False 3362.0 3362 97.323 571 2549 1 chr2A.!!$F2 1978
4 TraesCS3A01G493400 chr2A 6300753 6302715 1962 True 3243.0 3243 96.369 568 2549 1 chr2A.!!$R1 1981
5 TraesCS3A01G493400 chr2A 771778419 771779558 1139 False 1910.0 1910 96.853 572 1715 1 chr2A.!!$F3 1143
6 TraesCS3A01G493400 chr2A 744583163 744583997 834 False 1419.0 1419 97.365 1716 2549 1 chr2A.!!$F1 833
7 TraesCS3A01G493400 chr7A 18189930 18191909 1979 False 3323.0 3323 96.971 572 2549 1 chr7A.!!$F1 1977
8 TraesCS3A01G493400 chr7A 689995241 689996370 1129 True 1857.0 1857 96.157 571 1715 1 chr7A.!!$R2 1144
9 TraesCS3A01G493400 chr7A 150201910 150203038 1128 True 1849.0 1849 96.066 572 1715 1 chr7A.!!$R1 1143
10 TraesCS3A01G493400 chr7A 49208210 49210220 2010 False 1680.5 1914 97.414 572 2549 2 chr7A.!!$F3 1977
11 TraesCS3A01G493400 chr7A 36946199 36947299 1100 False 1559.0 1559 91.906 571 1715 1 chr7A.!!$F2 1144
12 TraesCS3A01G493400 chr5A 563443921 563445936 2015 False 3241.0 3241 95.941 563 2549 1 chr5A.!!$F2 1986
13 TraesCS3A01G493400 chr5A 36351239 36352146 907 False 1378.0 1378 93.939 795 1715 1 chr5A.!!$F1 920
14 TraesCS3A01G493400 chr7B 1775502 1776634 1132 True 1829.0 1829 95.648 569 1715 1 chr7B.!!$R1 1146
15 TraesCS3A01G493400 chr6A 14688942 14689817 875 True 1482.0 1482 97.156 1671 2549 1 chr6A.!!$R2 878
16 TraesCS3A01G493400 chr1A 50512285 50513120 835 False 1421.0 1421 97.368 1716 2549 1 chr1A.!!$F1 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.041926 CGGACGAAAAACACCGAACC 60.042 55.0 0.0 0.0 46.94 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2405 2.031258 TGGAAAAACACTCTCACGCA 57.969 45.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.868116 CGGGCCGGGGGTGTTATG 62.868 72.222 20.56 0.00 0.00 1.90
18 19 3.735097 GGGCCGGGGGTGTTATGT 61.735 66.667 2.18 0.00 0.00 2.29
19 20 2.357446 GGCCGGGGGTGTTATGTT 59.643 61.111 2.18 0.00 0.00 2.71
20 21 1.304630 GGCCGGGGGTGTTATGTTT 60.305 57.895 2.18 0.00 0.00 2.83
21 22 1.600511 GGCCGGGGGTGTTATGTTTG 61.601 60.000 2.18 0.00 0.00 2.93
22 23 0.609681 GCCGGGGGTGTTATGTTTGA 60.610 55.000 2.18 0.00 0.00 2.69
23 24 1.459450 CCGGGGGTGTTATGTTTGAG 58.541 55.000 0.00 0.00 0.00 3.02
24 25 0.808755 CGGGGGTGTTATGTTTGAGC 59.191 55.000 0.00 0.00 0.00 4.26
25 26 1.182667 GGGGGTGTTATGTTTGAGCC 58.817 55.000 0.00 0.00 0.00 4.70
26 27 1.182667 GGGGTGTTATGTTTGAGCCC 58.817 55.000 0.00 0.00 38.90 5.19
27 28 1.549037 GGGGTGTTATGTTTGAGCCCA 60.549 52.381 0.00 0.00 44.27 5.36
28 29 2.456577 GGGTGTTATGTTTGAGCCCAT 58.543 47.619 0.00 0.00 34.95 4.00
29 30 2.427095 GGGTGTTATGTTTGAGCCCATC 59.573 50.000 0.00 0.00 34.95 3.51
30 31 3.356290 GGTGTTATGTTTGAGCCCATCT 58.644 45.455 0.00 0.00 0.00 2.90
31 32 3.378427 GGTGTTATGTTTGAGCCCATCTC 59.622 47.826 0.00 0.00 42.23 2.75
39 40 2.408271 TGAGCCCATCTCATGTCAAC 57.592 50.000 0.00 0.00 46.34 3.18
40 41 1.293924 GAGCCCATCTCATGTCAACG 58.706 55.000 0.00 0.00 41.51 4.10
41 42 0.904649 AGCCCATCTCATGTCAACGA 59.095 50.000 0.00 0.00 0.00 3.85
42 43 1.134580 AGCCCATCTCATGTCAACGAG 60.135 52.381 0.00 0.00 0.00 4.18
43 44 1.945387 CCCATCTCATGTCAACGAGG 58.055 55.000 0.00 0.00 0.00 4.63
44 45 1.473965 CCCATCTCATGTCAACGAGGG 60.474 57.143 0.00 0.00 0.00 4.30
45 46 1.473965 CCATCTCATGTCAACGAGGGG 60.474 57.143 0.00 2.79 0.00 4.79
46 47 1.482182 CATCTCATGTCAACGAGGGGA 59.518 52.381 0.00 0.00 0.00 4.81
47 48 1.639722 TCTCATGTCAACGAGGGGAA 58.360 50.000 0.00 0.00 0.00 3.97
48 49 1.275291 TCTCATGTCAACGAGGGGAAC 59.725 52.381 0.00 0.00 0.00 3.62
62 63 3.670105 GGAACCCCTGAGCAAATCA 57.330 52.632 0.00 0.00 36.21 2.57
63 64 2.149973 GGAACCCCTGAGCAAATCAT 57.850 50.000 0.00 0.00 37.28 2.45
64 65 3.297134 GGAACCCCTGAGCAAATCATA 57.703 47.619 0.00 0.00 37.28 2.15
65 66 3.631250 GGAACCCCTGAGCAAATCATAA 58.369 45.455 0.00 0.00 37.28 1.90
66 67 4.218312 GGAACCCCTGAGCAAATCATAAT 58.782 43.478 0.00 0.00 37.28 1.28
67 68 4.651045 GGAACCCCTGAGCAAATCATAATT 59.349 41.667 0.00 0.00 37.28 1.40
68 69 5.833131 GGAACCCCTGAGCAAATCATAATTA 59.167 40.000 0.00 0.00 37.28 1.40
69 70 6.323739 GGAACCCCTGAGCAAATCATAATTAA 59.676 38.462 0.00 0.00 37.28 1.40
70 71 6.966534 ACCCCTGAGCAAATCATAATTAAG 57.033 37.500 0.00 0.00 37.28 1.85
71 72 5.835280 ACCCCTGAGCAAATCATAATTAAGG 59.165 40.000 0.00 0.00 37.28 2.69
72 73 6.070656 CCCCTGAGCAAATCATAATTAAGGA 58.929 40.000 0.00 0.00 37.28 3.36
73 74 6.550854 CCCCTGAGCAAATCATAATTAAGGAA 59.449 38.462 0.00 0.00 37.28 3.36
74 75 7.234166 CCCCTGAGCAAATCATAATTAAGGAAT 59.766 37.037 0.00 0.00 37.28 3.01
75 76 8.645110 CCCTGAGCAAATCATAATTAAGGAATT 58.355 33.333 0.00 0.00 37.28 2.17
76 77 9.688592 CCTGAGCAAATCATAATTAAGGAATTC 57.311 33.333 0.00 0.00 37.28 2.17
89 90 6.976934 TTAAGGAATTCTCTTTGCAAAGGT 57.023 33.333 33.01 17.28 36.67 3.50
90 91 5.459536 AAGGAATTCTCTTTGCAAAGGTC 57.540 39.130 33.01 22.19 36.67 3.85
91 92 4.473444 AGGAATTCTCTTTGCAAAGGTCA 58.527 39.130 33.01 19.73 36.67 4.02
92 93 5.082425 AGGAATTCTCTTTGCAAAGGTCAT 58.918 37.500 33.01 20.85 36.67 3.06
93 94 5.541484 AGGAATTCTCTTTGCAAAGGTCATT 59.459 36.000 33.01 26.15 36.67 2.57
94 95 5.866092 GGAATTCTCTTTGCAAAGGTCATTC 59.134 40.000 33.01 30.11 36.67 2.67
95 96 6.294955 GGAATTCTCTTTGCAAAGGTCATTCT 60.295 38.462 33.01 15.51 36.67 2.40
96 97 5.695851 TTCTCTTTGCAAAGGTCATTCTC 57.304 39.130 33.01 0.00 36.67 2.87
97 98 4.717877 TCTCTTTGCAAAGGTCATTCTCA 58.282 39.130 33.01 13.84 36.67 3.27
98 99 4.516698 TCTCTTTGCAAAGGTCATTCTCAC 59.483 41.667 33.01 0.00 36.67 3.51
99 100 3.569701 TCTTTGCAAAGGTCATTCTCACC 59.430 43.478 33.01 0.00 36.67 4.02
107 108 4.453480 AGGTCATTCTCACCTTTCCAAA 57.547 40.909 0.00 0.00 41.95 3.28
108 109 5.003096 AGGTCATTCTCACCTTTCCAAAT 57.997 39.130 0.00 0.00 41.95 2.32
109 110 5.397360 AGGTCATTCTCACCTTTCCAAATT 58.603 37.500 0.00 0.00 41.95 1.82
110 111 5.244626 AGGTCATTCTCACCTTTCCAAATTG 59.755 40.000 0.00 0.00 41.95 2.32
111 112 5.011023 GGTCATTCTCACCTTTCCAAATTGT 59.989 40.000 0.00 0.00 0.00 2.71
112 113 5.922544 GTCATTCTCACCTTTCCAAATTGTG 59.077 40.000 0.00 0.00 0.00 3.33
113 114 5.832595 TCATTCTCACCTTTCCAAATTGTGA 59.167 36.000 0.00 0.00 34.95 3.58
114 115 5.514274 TTCTCACCTTTCCAAATTGTGAC 57.486 39.130 0.00 0.00 32.87 3.67
115 116 4.531854 TCTCACCTTTCCAAATTGTGACA 58.468 39.130 0.00 0.00 32.87 3.58
116 117 4.952957 TCTCACCTTTCCAAATTGTGACAA 59.047 37.500 0.00 0.00 32.87 3.18
117 118 5.067674 TCTCACCTTTCCAAATTGTGACAAG 59.932 40.000 3.74 0.00 32.87 3.16
118 119 4.709397 TCACCTTTCCAAATTGTGACAAGT 59.291 37.500 3.74 0.00 31.45 3.16
119 120 4.805192 CACCTTTCCAAATTGTGACAAGTG 59.195 41.667 3.74 4.57 0.00 3.16
120 121 4.141959 ACCTTTCCAAATTGTGACAAGTGG 60.142 41.667 19.47 19.47 0.00 4.00
121 122 3.451141 TTCCAAATTGTGACAAGTGGC 57.549 42.857 20.31 0.00 0.00 5.01
122 123 1.336440 TCCAAATTGTGACAAGTGGCG 59.664 47.619 20.31 4.64 0.00 5.69
123 124 1.066908 CCAAATTGTGACAAGTGGCGT 59.933 47.619 15.30 0.00 0.00 5.68
124 125 2.292016 CCAAATTGTGACAAGTGGCGTA 59.708 45.455 15.30 0.00 0.00 4.42
125 126 3.296628 CAAATTGTGACAAGTGGCGTAC 58.703 45.455 3.74 0.00 0.00 3.67
126 127 2.543777 ATTGTGACAAGTGGCGTACT 57.456 45.000 3.74 0.00 42.89 2.73
127 128 3.671008 ATTGTGACAAGTGGCGTACTA 57.329 42.857 3.74 0.00 39.18 1.82
128 129 2.427232 TGTGACAAGTGGCGTACTAC 57.573 50.000 0.00 0.00 39.18 2.73
129 130 1.682323 TGTGACAAGTGGCGTACTACA 59.318 47.619 0.00 0.00 39.18 2.74
130 131 2.297880 TGTGACAAGTGGCGTACTACAT 59.702 45.455 0.00 0.00 39.18 2.29
131 132 2.666508 GTGACAAGTGGCGTACTACATG 59.333 50.000 0.00 0.00 39.18 3.21
132 133 2.297880 TGACAAGTGGCGTACTACATGT 59.702 45.455 2.69 2.69 39.18 3.21
133 134 2.666508 GACAAGTGGCGTACTACATGTG 59.333 50.000 9.11 0.93 39.18 3.21
134 135 1.393539 CAAGTGGCGTACTACATGTGC 59.606 52.381 9.11 2.15 39.18 4.57
135 136 0.606096 AGTGGCGTACTACATGTGCA 59.394 50.000 9.11 0.00 38.04 4.57
136 137 1.207089 AGTGGCGTACTACATGTGCAT 59.793 47.619 9.11 0.00 38.04 3.96
137 138 1.593006 GTGGCGTACTACATGTGCATC 59.407 52.381 9.11 0.00 0.00 3.91
138 139 1.205893 TGGCGTACTACATGTGCATCA 59.794 47.619 9.11 0.00 0.00 3.07
139 140 1.593006 GGCGTACTACATGTGCATCAC 59.407 52.381 9.11 0.00 34.56 3.06
140 141 2.540515 GCGTACTACATGTGCATCACT 58.459 47.619 9.11 0.00 35.11 3.41
141 142 2.930040 GCGTACTACATGTGCATCACTT 59.070 45.455 9.11 0.00 35.11 3.16
142 143 3.242091 GCGTACTACATGTGCATCACTTG 60.242 47.826 9.11 10.15 42.61 3.16
144 145 4.031765 CGTACTACATGTGCATCACTTGTC 59.968 45.833 17.77 6.91 45.26 3.18
145 146 2.995939 ACTACATGTGCATCACTTGTCG 59.004 45.455 17.77 14.98 45.26 4.35
146 147 0.518636 ACATGTGCATCACTTGTCGC 59.481 50.000 0.00 0.00 45.26 5.19
147 148 0.518195 CATGTGCATCACTTGTCGCA 59.482 50.000 0.00 0.00 35.64 5.10
148 149 1.069091 CATGTGCATCACTTGTCGCAA 60.069 47.619 0.00 0.00 35.64 4.85
149 150 0.307453 TGTGCATCACTTGTCGCAAC 59.693 50.000 0.00 0.00 35.87 4.17
150 151 0.385974 GTGCATCACTTGTCGCAACC 60.386 55.000 0.00 0.00 35.87 3.77
151 152 0.534877 TGCATCACTTGTCGCAACCT 60.535 50.000 0.00 0.00 0.00 3.50
152 153 0.110056 GCATCACTTGTCGCAACCTG 60.110 55.000 0.00 0.00 0.00 4.00
153 154 1.229428 CATCACTTGTCGCAACCTGT 58.771 50.000 0.00 0.00 0.00 4.00
154 155 1.069703 CATCACTTGTCGCAACCTGTG 60.070 52.381 0.00 0.00 0.00 3.66
155 156 0.176910 TCACTTGTCGCAACCTGTGA 59.823 50.000 8.16 8.16 35.60 3.58
156 157 0.583438 CACTTGTCGCAACCTGTGAG 59.417 55.000 0.00 0.00 37.59 3.51
157 158 0.178068 ACTTGTCGCAACCTGTGAGT 59.822 50.000 0.00 0.00 37.59 3.41
158 159 1.299541 CTTGTCGCAACCTGTGAGTT 58.700 50.000 0.00 0.00 37.59 3.01
159 160 1.670811 CTTGTCGCAACCTGTGAGTTT 59.329 47.619 0.00 0.00 37.59 2.66
160 161 1.745232 TGTCGCAACCTGTGAGTTTT 58.255 45.000 0.00 0.00 37.59 2.43
161 162 2.088423 TGTCGCAACCTGTGAGTTTTT 58.912 42.857 0.00 0.00 37.59 1.94
162 163 2.096819 TGTCGCAACCTGTGAGTTTTTC 59.903 45.455 0.00 0.00 37.59 2.29
163 164 2.354821 GTCGCAACCTGTGAGTTTTTCT 59.645 45.455 0.00 0.00 37.59 2.52
164 165 3.013921 TCGCAACCTGTGAGTTTTTCTT 58.986 40.909 0.00 0.00 31.05 2.52
165 166 3.442273 TCGCAACCTGTGAGTTTTTCTTT 59.558 39.130 0.00 0.00 31.05 2.52
166 167 4.082463 TCGCAACCTGTGAGTTTTTCTTTT 60.082 37.500 0.00 0.00 31.05 2.27
167 168 4.625311 CGCAACCTGTGAGTTTTTCTTTTT 59.375 37.500 0.00 0.00 0.00 1.94
168 169 5.220209 CGCAACCTGTGAGTTTTTCTTTTTC 60.220 40.000 0.00 0.00 0.00 2.29
169 170 5.637387 GCAACCTGTGAGTTTTTCTTTTTCA 59.363 36.000 0.00 0.00 0.00 2.69
170 171 6.313658 GCAACCTGTGAGTTTTTCTTTTTCAT 59.686 34.615 0.00 0.00 0.00 2.57
171 172 7.491048 GCAACCTGTGAGTTTTTCTTTTTCATA 59.509 33.333 0.00 0.00 0.00 2.15
172 173 9.023967 CAACCTGTGAGTTTTTCTTTTTCATAG 57.976 33.333 0.00 0.00 0.00 2.23
173 174 8.519799 ACCTGTGAGTTTTTCTTTTTCATAGA 57.480 30.769 0.00 0.00 31.21 1.98
174 175 9.136323 ACCTGTGAGTTTTTCTTTTTCATAGAT 57.864 29.630 0.00 0.00 31.21 1.98
175 176 9.971922 CCTGTGAGTTTTTCTTTTTCATAGATT 57.028 29.630 0.00 0.00 31.21 2.40
214 215 8.723942 AGTTTTATCACTTAGATCATGTGTCC 57.276 34.615 10.88 0.00 38.19 4.02
215 216 8.321353 AGTTTTATCACTTAGATCATGTGTCCA 58.679 33.333 10.88 0.00 38.19 4.02
216 217 8.946085 GTTTTATCACTTAGATCATGTGTCCAA 58.054 33.333 10.88 3.97 38.19 3.53
217 218 9.513906 TTTTATCACTTAGATCATGTGTCCAAA 57.486 29.630 10.88 7.97 38.19 3.28
218 219 9.685276 TTTATCACTTAGATCATGTGTCCAAAT 57.315 29.630 10.88 2.73 38.19 2.32
219 220 7.798596 ATCACTTAGATCATGTGTCCAAATC 57.201 36.000 10.88 0.00 34.65 2.17
220 221 6.950842 TCACTTAGATCATGTGTCCAAATCT 58.049 36.000 10.88 0.00 34.65 2.40
221 222 7.397221 TCACTTAGATCATGTGTCCAAATCTT 58.603 34.615 10.88 0.00 34.65 2.40
222 223 7.550551 TCACTTAGATCATGTGTCCAAATCTTC 59.449 37.037 10.88 0.00 34.65 2.87
223 224 7.335171 CACTTAGATCATGTGTCCAAATCTTCA 59.665 37.037 0.00 0.00 32.49 3.02
224 225 8.051535 ACTTAGATCATGTGTCCAAATCTTCAT 58.948 33.333 0.00 0.00 32.49 2.57
225 226 6.939132 AGATCATGTGTCCAAATCTTCATC 57.061 37.500 0.00 0.00 0.00 2.92
226 227 5.826737 AGATCATGTGTCCAAATCTTCATCC 59.173 40.000 0.00 0.00 0.00 3.51
227 228 3.940852 TCATGTGTCCAAATCTTCATCCG 59.059 43.478 0.00 0.00 0.00 4.18
228 229 3.417069 TGTGTCCAAATCTTCATCCGT 57.583 42.857 0.00 0.00 0.00 4.69
229 230 3.750371 TGTGTCCAAATCTTCATCCGTT 58.250 40.909 0.00 0.00 0.00 4.44
230 231 4.141287 TGTGTCCAAATCTTCATCCGTTT 58.859 39.130 0.00 0.00 0.00 3.60
231 232 4.582656 TGTGTCCAAATCTTCATCCGTTTT 59.417 37.500 0.00 0.00 0.00 2.43
232 233 5.154222 GTGTCCAAATCTTCATCCGTTTTC 58.846 41.667 0.00 0.00 0.00 2.29
233 234 4.824537 TGTCCAAATCTTCATCCGTTTTCA 59.175 37.500 0.00 0.00 0.00 2.69
234 235 5.154222 GTCCAAATCTTCATCCGTTTTCAC 58.846 41.667 0.00 0.00 0.00 3.18
235 236 5.048713 GTCCAAATCTTCATCCGTTTTCACT 60.049 40.000 0.00 0.00 0.00 3.41
236 237 5.048782 TCCAAATCTTCATCCGTTTTCACTG 60.049 40.000 0.00 0.00 0.00 3.66
237 238 5.278463 CCAAATCTTCATCCGTTTTCACTGT 60.278 40.000 0.00 0.00 0.00 3.55
238 239 6.208644 CAAATCTTCATCCGTTTTCACTGTT 58.791 36.000 0.00 0.00 0.00 3.16
239 240 4.811555 TCTTCATCCGTTTTCACTGTTG 57.188 40.909 0.00 0.00 0.00 3.33
240 241 4.447290 TCTTCATCCGTTTTCACTGTTGA 58.553 39.130 0.00 0.00 0.00 3.18
241 242 4.878971 TCTTCATCCGTTTTCACTGTTGAA 59.121 37.500 0.00 0.00 40.14 2.69
242 243 5.530915 TCTTCATCCGTTTTCACTGTTGAAT 59.469 36.000 0.00 0.00 41.50 2.57
243 244 5.766150 TCATCCGTTTTCACTGTTGAATT 57.234 34.783 0.00 0.00 41.50 2.17
244 245 5.757886 TCATCCGTTTTCACTGTTGAATTC 58.242 37.500 0.00 0.00 41.50 2.17
245 246 4.561735 TCCGTTTTCACTGTTGAATTCC 57.438 40.909 2.27 0.00 41.50 3.01
246 247 4.204012 TCCGTTTTCACTGTTGAATTCCT 58.796 39.130 2.27 0.00 41.50 3.36
247 248 4.642885 TCCGTTTTCACTGTTGAATTCCTT 59.357 37.500 2.27 0.00 41.50 3.36
248 249 4.739716 CCGTTTTCACTGTTGAATTCCTTG 59.260 41.667 2.27 0.00 41.50 3.61
249 250 4.207019 CGTTTTCACTGTTGAATTCCTTGC 59.793 41.667 2.27 0.00 41.50 4.01
250 251 4.998671 TTTCACTGTTGAATTCCTTGCA 57.001 36.364 2.27 0.00 41.50 4.08
251 252 5.534207 TTTCACTGTTGAATTCCTTGCAT 57.466 34.783 2.27 0.00 41.50 3.96
252 253 5.534207 TTCACTGTTGAATTCCTTGCATT 57.466 34.783 2.27 0.00 36.79 3.56
253 254 5.534207 TCACTGTTGAATTCCTTGCATTT 57.466 34.783 2.27 0.00 0.00 2.32
254 255 6.647334 TCACTGTTGAATTCCTTGCATTTA 57.353 33.333 2.27 0.00 0.00 1.40
255 256 7.048629 TCACTGTTGAATTCCTTGCATTTAA 57.951 32.000 2.27 0.00 0.00 1.52
256 257 7.495901 TCACTGTTGAATTCCTTGCATTTAAA 58.504 30.769 2.27 0.00 0.00 1.52
257 258 8.149647 TCACTGTTGAATTCCTTGCATTTAAAT 58.850 29.630 2.27 0.00 0.00 1.40
258 259 8.437742 CACTGTTGAATTCCTTGCATTTAAATC 58.562 33.333 2.27 0.00 0.00 2.17
259 260 8.370182 ACTGTTGAATTCCTTGCATTTAAATCT 58.630 29.630 2.27 0.00 0.00 2.40
260 261 9.859427 CTGTTGAATTCCTTGCATTTAAATCTA 57.141 29.630 2.27 0.00 0.00 1.98
333 334 2.673976 AAATCGGACGAAAAACACCG 57.326 45.000 0.00 0.00 45.61 4.94
336 337 3.426008 CGGACGAAAAACACCGAAC 57.574 52.632 0.00 0.00 46.94 3.95
337 338 0.041926 CGGACGAAAAACACCGAACC 60.042 55.000 0.00 0.00 46.94 3.62
338 339 1.015868 GGACGAAAAACACCGAACCA 58.984 50.000 0.00 0.00 0.00 3.67
339 340 1.003223 GGACGAAAAACACCGAACCAG 60.003 52.381 0.00 0.00 0.00 4.00
340 341 1.003223 GACGAAAAACACCGAACCAGG 60.003 52.381 0.00 0.00 37.30 4.45
341 342 1.301423 CGAAAAACACCGAACCAGGA 58.699 50.000 0.00 0.00 34.73 3.86
342 343 1.263217 CGAAAAACACCGAACCAGGAG 59.737 52.381 0.00 0.00 34.73 3.69
343 344 1.001706 GAAAAACACCGAACCAGGAGC 60.002 52.381 0.00 0.00 34.73 4.70
344 345 0.106918 AAAACACCGAACCAGGAGCA 60.107 50.000 0.00 0.00 34.73 4.26
345 346 0.535102 AAACACCGAACCAGGAGCAG 60.535 55.000 0.00 0.00 34.73 4.24
346 347 2.046892 CACCGAACCAGGAGCAGG 60.047 66.667 0.00 0.00 34.73 4.85
347 348 2.526873 ACCGAACCAGGAGCAGGT 60.527 61.111 0.00 0.00 42.34 4.00
352 353 3.986054 ACCAGGAGCAGGTTGTGA 58.014 55.556 0.00 0.00 35.33 3.58
353 354 1.451936 ACCAGGAGCAGGTTGTGAC 59.548 57.895 0.00 0.00 35.33 3.67
354 355 1.669115 CCAGGAGCAGGTTGTGACG 60.669 63.158 0.00 0.00 0.00 4.35
355 356 1.367471 CAGGAGCAGGTTGTGACGA 59.633 57.895 0.00 0.00 0.00 4.20
356 357 0.249868 CAGGAGCAGGTTGTGACGAA 60.250 55.000 0.00 0.00 0.00 3.85
357 358 0.249911 AGGAGCAGGTTGTGACGAAC 60.250 55.000 0.00 0.00 0.00 3.95
358 359 0.249911 GGAGCAGGTTGTGACGAACT 60.250 55.000 0.00 0.00 0.00 3.01
359 360 1.583054 GAGCAGGTTGTGACGAACTT 58.417 50.000 0.00 0.00 0.00 2.66
360 361 1.940613 GAGCAGGTTGTGACGAACTTT 59.059 47.619 0.00 0.00 0.00 2.66
361 362 3.128349 GAGCAGGTTGTGACGAACTTTA 58.872 45.455 0.00 0.00 0.00 1.85
362 363 3.740115 AGCAGGTTGTGACGAACTTTAT 58.260 40.909 0.00 0.00 0.00 1.40
363 364 4.134563 AGCAGGTTGTGACGAACTTTATT 58.865 39.130 0.00 0.00 0.00 1.40
364 365 4.578928 AGCAGGTTGTGACGAACTTTATTT 59.421 37.500 0.00 0.00 0.00 1.40
365 366 5.067283 AGCAGGTTGTGACGAACTTTATTTT 59.933 36.000 0.00 0.00 0.00 1.82
366 367 5.746721 GCAGGTTGTGACGAACTTTATTTTT 59.253 36.000 0.00 0.00 0.00 1.94
400 401 2.165998 AGAAGCAAAACCATGCCTCTC 58.834 47.619 0.00 0.00 42.04 3.20
401 402 3.453831 AGAAGCAAAACCATGCCTCTCG 61.454 50.000 0.00 0.00 42.04 4.04
402 403 2.555123 GCAAAACCATGCCTCTCGA 58.445 52.632 0.00 0.00 40.49 4.04
403 404 0.449388 GCAAAACCATGCCTCTCGAG 59.551 55.000 5.93 5.93 40.49 4.04
435 436 7.642071 AAAAAGAAAACGTATACTAGTGCGA 57.358 32.000 18.47 0.00 0.00 5.10
436 437 7.642071 AAAAGAAAACGTATACTAGTGCGAA 57.358 32.000 18.47 0.00 0.00 4.70
437 438 7.642071 AAAGAAAACGTATACTAGTGCGAAA 57.358 32.000 18.47 0.00 0.00 3.46
438 439 7.642071 AAGAAAACGTATACTAGTGCGAAAA 57.358 32.000 18.47 0.00 0.00 2.29
439 440 7.274442 AGAAAACGTATACTAGTGCGAAAAG 57.726 36.000 18.47 2.77 0.00 2.27
440 441 6.865205 AGAAAACGTATACTAGTGCGAAAAGT 59.135 34.615 18.47 3.29 0.00 2.66
441 442 7.383300 AGAAAACGTATACTAGTGCGAAAAGTT 59.617 33.333 18.47 8.11 0.00 2.66
442 443 6.623223 AACGTATACTAGTGCGAAAAGTTC 57.377 37.500 18.47 0.00 0.00 3.01
443 444 5.098211 ACGTATACTAGTGCGAAAAGTTCC 58.902 41.667 18.47 0.00 0.00 3.62
444 445 5.097529 CGTATACTAGTGCGAAAAGTTCCA 58.902 41.667 5.39 0.00 0.00 3.53
445 446 5.574055 CGTATACTAGTGCGAAAAGTTCCAA 59.426 40.000 5.39 0.00 0.00 3.53
446 447 6.089820 CGTATACTAGTGCGAAAAGTTCCAAA 59.910 38.462 5.39 0.00 0.00 3.28
447 448 6.870971 ATACTAGTGCGAAAAGTTCCAAAA 57.129 33.333 5.39 0.00 0.00 2.44
448 449 5.570234 ACTAGTGCGAAAAGTTCCAAAAA 57.430 34.783 0.00 0.00 0.00 1.94
471 472 8.634475 AAAAATTCCTCTTTGACTTCTTTTCG 57.366 30.769 0.00 0.00 0.00 3.46
472 473 7.568199 AAATTCCTCTTTGACTTCTTTTCGA 57.432 32.000 0.00 0.00 0.00 3.71
473 474 7.568199 AATTCCTCTTTGACTTCTTTTCGAA 57.432 32.000 0.00 0.00 0.00 3.71
474 475 6.995511 TTCCTCTTTGACTTCTTTTCGAAA 57.004 33.333 6.47 6.47 0.00 3.46
475 476 6.995511 TCCTCTTTGACTTCTTTTCGAAAA 57.004 33.333 21.35 21.35 0.00 2.29
476 477 7.385778 TCCTCTTTGACTTCTTTTCGAAAAA 57.614 32.000 22.67 9.49 0.00 1.94
477 478 7.472543 TCCTCTTTGACTTCTTTTCGAAAAAG 58.527 34.615 22.67 19.56 32.24 2.27
478 479 7.335924 TCCTCTTTGACTTCTTTTCGAAAAAGA 59.664 33.333 22.67 17.57 35.33 2.52
479 480 7.968405 CCTCTTTGACTTCTTTTCGAAAAAGAA 59.032 33.333 22.67 22.60 42.15 2.52
480 481 9.341899 CTCTTTGACTTCTTTTCGAAAAAGAAA 57.658 29.630 22.67 15.69 43.28 2.52
481 482 9.685828 TCTTTGACTTCTTTTCGAAAAAGAAAA 57.314 25.926 22.67 19.16 43.28 2.29
504 505 8.600449 AAAAATTTCGGTCAAAATAGCATGAA 57.400 26.923 0.00 0.00 0.00 2.57
505 506 8.776376 AAAATTTCGGTCAAAATAGCATGAAT 57.224 26.923 0.00 0.00 0.00 2.57
506 507 9.868277 AAAATTTCGGTCAAAATAGCATGAATA 57.132 25.926 0.00 0.00 0.00 1.75
507 508 9.520204 AAATTTCGGTCAAAATAGCATGAATAG 57.480 29.630 0.00 0.00 0.00 1.73
508 509 7.624360 TTTCGGTCAAAATAGCATGAATAGT 57.376 32.000 0.00 0.00 0.00 2.12
509 510 6.603237 TCGGTCAAAATAGCATGAATAGTG 57.397 37.500 0.00 0.00 0.00 2.74
510 511 6.345298 TCGGTCAAAATAGCATGAATAGTGA 58.655 36.000 0.00 0.00 0.00 3.41
511 512 6.992123 TCGGTCAAAATAGCATGAATAGTGAT 59.008 34.615 0.00 0.00 0.00 3.06
512 513 7.171508 TCGGTCAAAATAGCATGAATAGTGATC 59.828 37.037 0.00 0.00 0.00 2.92
513 514 7.172190 CGGTCAAAATAGCATGAATAGTGATCT 59.828 37.037 0.00 0.00 0.00 2.75
514 515 9.494271 GGTCAAAATAGCATGAATAGTGATCTA 57.506 33.333 0.00 0.00 0.00 1.98
552 553 4.695217 TTTGTCTTTTTCGCTGTGAAGT 57.305 36.364 3.65 0.00 37.99 3.01
553 554 4.695217 TTGTCTTTTTCGCTGTGAAGTT 57.305 36.364 3.65 0.00 37.99 2.66
554 555 5.804692 TTGTCTTTTTCGCTGTGAAGTTA 57.195 34.783 3.65 0.00 37.99 2.24
555 556 5.804692 TGTCTTTTTCGCTGTGAAGTTAA 57.195 34.783 3.65 0.59 37.99 2.01
556 557 5.565695 TGTCTTTTTCGCTGTGAAGTTAAC 58.434 37.500 3.65 0.00 37.99 2.01
557 558 4.664851 GTCTTTTTCGCTGTGAAGTTAACG 59.335 41.667 3.65 0.00 37.99 3.18
558 559 4.330620 TCTTTTTCGCTGTGAAGTTAACGT 59.669 37.500 3.65 0.00 37.99 3.99
559 560 4.603231 TTTTCGCTGTGAAGTTAACGTT 57.397 36.364 5.88 5.88 37.99 3.99
560 561 3.579147 TTCGCTGTGAAGTTAACGTTG 57.421 42.857 11.99 0.00 31.44 4.10
561 562 1.862201 TCGCTGTGAAGTTAACGTTGG 59.138 47.619 11.99 0.00 0.00 3.77
562 563 1.595794 CGCTGTGAAGTTAACGTTGGT 59.404 47.619 11.99 0.00 0.00 3.67
563 564 2.031191 CGCTGTGAAGTTAACGTTGGTT 59.969 45.455 11.99 0.87 40.20 3.67
564 565 3.486209 CGCTGTGAAGTTAACGTTGGTTT 60.486 43.478 11.99 1.75 37.58 3.27
565 566 4.417506 GCTGTGAAGTTAACGTTGGTTTT 58.582 39.130 11.99 0.00 37.58 2.43
566 567 4.860352 GCTGTGAAGTTAACGTTGGTTTTT 59.140 37.500 11.99 0.00 37.58 1.94
602 603 1.402787 CTTTTGCCCTCAGTGGTGTT 58.597 50.000 0.00 0.00 0.00 3.32
637 638 1.098050 GCCCTCAGATGCGAATTGTT 58.902 50.000 0.00 0.00 0.00 2.83
641 642 2.283617 CCTCAGATGCGAATTGTTCTCG 59.716 50.000 0.00 0.00 39.33 4.04
961 983 0.324943 GTGGGAAGCTAGCAGTGGAA 59.675 55.000 18.83 0.00 0.00 3.53
1077 1100 1.847328 TGCCTGTCTTCGTCTATCCA 58.153 50.000 0.00 0.00 0.00 3.41
1475 1498 6.068461 TCAAGCACTACCAATACCCATTTA 57.932 37.500 0.00 0.00 0.00 1.40
1629 1666 9.022884 TGTTGGTTAAAGTAGTTGTTTAAAGGT 57.977 29.630 0.00 0.00 32.53 3.50
1796 1888 2.704065 GGCTAGACTAATGGGCCAACTA 59.296 50.000 11.89 4.22 42.08 2.24
2002 2094 9.632807 CCGTGATTTAAATCAAAGACCAAAATA 57.367 29.630 28.02 2.68 46.13 1.40
2158 2251 2.754658 CGGCTGGGGACTCGTACT 60.755 66.667 0.00 0.00 0.00 2.73
2399 2497 4.022416 GCACTACCACATGATTTTGGTCAA 60.022 41.667 8.88 0.00 42.86 3.18
2442 2540 2.039084 AGAGTGGCACTTGGTTTAGGAG 59.961 50.000 22.98 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.868116 CATAACACCCCCGGCCCG 62.868 72.222 0.00 0.00 0.00 6.13
1 2 2.791613 AAACATAACACCCCCGGCCC 62.792 60.000 0.00 0.00 0.00 5.80
2 3 1.304630 AAACATAACACCCCCGGCC 60.305 57.895 0.00 0.00 0.00 6.13
3 4 0.609681 TCAAACATAACACCCCCGGC 60.610 55.000 0.00 0.00 0.00 6.13
4 5 1.459450 CTCAAACATAACACCCCCGG 58.541 55.000 0.00 0.00 0.00 5.73
6 7 1.182667 GGCTCAAACATAACACCCCC 58.817 55.000 0.00 0.00 0.00 5.40
7 8 1.182667 GGGCTCAAACATAACACCCC 58.817 55.000 0.00 0.00 0.00 4.95
8 9 1.917872 TGGGCTCAAACATAACACCC 58.082 50.000 0.00 0.00 36.36 4.61
9 10 3.356290 AGATGGGCTCAAACATAACACC 58.644 45.455 0.00 0.00 0.00 4.16
10 11 4.622701 GAGATGGGCTCAAACATAACAC 57.377 45.455 0.00 0.00 43.38 3.32
21 22 1.134699 TCGTTGACATGAGATGGGCTC 60.135 52.381 0.00 0.00 44.21 4.70
22 23 0.904649 TCGTTGACATGAGATGGGCT 59.095 50.000 0.00 0.00 33.60 5.19
23 24 1.293924 CTCGTTGACATGAGATGGGC 58.706 55.000 0.00 0.00 38.21 5.36
24 25 1.473965 CCCTCGTTGACATGAGATGGG 60.474 57.143 0.00 0.00 38.21 4.00
25 26 1.473965 CCCCTCGTTGACATGAGATGG 60.474 57.143 0.00 4.03 38.21 3.51
26 27 1.482182 TCCCCTCGTTGACATGAGATG 59.518 52.381 0.00 0.00 38.21 2.90
27 28 1.866015 TCCCCTCGTTGACATGAGAT 58.134 50.000 0.00 0.00 38.21 2.75
28 29 1.275291 GTTCCCCTCGTTGACATGAGA 59.725 52.381 0.00 0.00 38.21 3.27
29 30 1.676014 GGTTCCCCTCGTTGACATGAG 60.676 57.143 0.00 0.00 35.96 2.90
30 31 0.323629 GGTTCCCCTCGTTGACATGA 59.676 55.000 0.00 0.00 0.00 3.07
31 32 0.676782 GGGTTCCCCTCGTTGACATG 60.677 60.000 0.00 0.00 41.34 3.21
32 33 1.683441 GGGTTCCCCTCGTTGACAT 59.317 57.895 0.00 0.00 41.34 3.06
33 34 2.522367 GGGGTTCCCCTCGTTGACA 61.522 63.158 18.94 0.00 44.66 3.58
34 35 2.350134 GGGGTTCCCCTCGTTGAC 59.650 66.667 18.94 0.00 44.66 3.18
42 43 0.684479 GATTTGCTCAGGGGTTCCCC 60.684 60.000 18.61 18.61 46.99 4.81
43 44 0.039618 TGATTTGCTCAGGGGTTCCC 59.960 55.000 0.00 0.00 45.90 3.97
44 45 2.149973 ATGATTTGCTCAGGGGTTCC 57.850 50.000 0.00 0.00 37.28 3.62
45 46 5.859205 AATTATGATTTGCTCAGGGGTTC 57.141 39.130 0.00 0.00 37.28 3.62
46 47 6.324770 CCTTAATTATGATTTGCTCAGGGGTT 59.675 38.462 0.04 0.00 37.28 4.11
47 48 5.835280 CCTTAATTATGATTTGCTCAGGGGT 59.165 40.000 0.04 0.00 37.28 4.95
48 49 6.070656 TCCTTAATTATGATTTGCTCAGGGG 58.929 40.000 0.04 0.00 37.28 4.79
49 50 7.587037 TTCCTTAATTATGATTTGCTCAGGG 57.413 36.000 0.04 0.00 37.28 4.45
50 51 9.688592 GAATTCCTTAATTATGATTTGCTCAGG 57.311 33.333 0.00 0.00 34.78 3.86
63 64 9.088987 ACCTTTGCAAAGAGAATTCCTTAATTA 57.911 29.630 35.25 0.00 38.28 1.40
64 65 7.966812 ACCTTTGCAAAGAGAATTCCTTAATT 58.033 30.769 35.25 6.90 38.28 1.40
65 66 7.233348 TGACCTTTGCAAAGAGAATTCCTTAAT 59.767 33.333 35.25 9.49 38.28 1.40
66 67 6.549364 TGACCTTTGCAAAGAGAATTCCTTAA 59.451 34.615 35.25 8.80 38.28 1.85
67 68 6.068010 TGACCTTTGCAAAGAGAATTCCTTA 58.932 36.000 35.25 10.29 38.28 2.69
68 69 4.895297 TGACCTTTGCAAAGAGAATTCCTT 59.105 37.500 35.25 11.33 38.28 3.36
69 70 4.473444 TGACCTTTGCAAAGAGAATTCCT 58.527 39.130 35.25 11.94 38.28 3.36
70 71 4.853924 TGACCTTTGCAAAGAGAATTCC 57.146 40.909 35.25 17.41 38.28 3.01
71 72 6.685657 AGAATGACCTTTGCAAAGAGAATTC 58.314 36.000 35.25 31.74 38.28 2.17
72 73 6.266103 TGAGAATGACCTTTGCAAAGAGAATT 59.734 34.615 35.25 27.71 38.28 2.17
73 74 5.771666 TGAGAATGACCTTTGCAAAGAGAAT 59.228 36.000 35.25 22.48 38.28 2.40
74 75 5.009010 GTGAGAATGACCTTTGCAAAGAGAA 59.991 40.000 35.25 21.42 38.28 2.87
75 76 4.516698 GTGAGAATGACCTTTGCAAAGAGA 59.483 41.667 35.25 20.44 38.28 3.10
76 77 4.320788 GGTGAGAATGACCTTTGCAAAGAG 60.321 45.833 35.25 26.68 40.25 2.85
77 78 3.569701 GGTGAGAATGACCTTTGCAAAGA 59.430 43.478 35.25 19.34 40.25 2.52
78 79 3.905784 GGTGAGAATGACCTTTGCAAAG 58.094 45.455 28.69 28.69 40.25 2.77
87 88 5.011023 ACAATTTGGAAAGGTGAGAATGACC 59.989 40.000 0.78 0.00 45.68 4.02
88 89 5.922544 CACAATTTGGAAAGGTGAGAATGAC 59.077 40.000 0.78 0.00 32.22 3.06
89 90 5.832595 TCACAATTTGGAAAGGTGAGAATGA 59.167 36.000 0.78 0.00 33.79 2.57
90 91 5.922544 GTCACAATTTGGAAAGGTGAGAATG 59.077 40.000 0.78 0.00 37.05 2.67
91 92 5.598005 TGTCACAATTTGGAAAGGTGAGAAT 59.402 36.000 0.78 0.00 37.05 2.40
92 93 4.952957 TGTCACAATTTGGAAAGGTGAGAA 59.047 37.500 0.78 1.37 37.05 2.87
93 94 4.531854 TGTCACAATTTGGAAAGGTGAGA 58.468 39.130 0.78 6.22 37.05 3.27
94 95 4.916983 TGTCACAATTTGGAAAGGTGAG 57.083 40.909 0.78 0.00 37.05 3.51
95 96 4.709397 ACTTGTCACAATTTGGAAAGGTGA 59.291 37.500 0.78 5.68 35.28 4.02
96 97 4.805192 CACTTGTCACAATTTGGAAAGGTG 59.195 41.667 0.78 4.19 0.00 4.00
97 98 4.141959 CCACTTGTCACAATTTGGAAAGGT 60.142 41.667 11.49 0.00 0.00 3.50
98 99 4.370917 CCACTTGTCACAATTTGGAAAGG 58.629 43.478 11.49 0.00 0.00 3.11
99 100 3.803778 GCCACTTGTCACAATTTGGAAAG 59.196 43.478 18.64 0.00 0.00 2.62
100 101 3.736433 CGCCACTTGTCACAATTTGGAAA 60.736 43.478 18.64 0.00 0.00 3.13
101 102 2.223688 CGCCACTTGTCACAATTTGGAA 60.224 45.455 18.64 0.00 0.00 3.53
102 103 1.336440 CGCCACTTGTCACAATTTGGA 59.664 47.619 18.64 0.00 0.00 3.53
103 104 1.066908 ACGCCACTTGTCACAATTTGG 59.933 47.619 12.31 12.31 0.00 3.28
104 105 2.490328 ACGCCACTTGTCACAATTTG 57.510 45.000 0.00 0.00 0.00 2.32
105 106 3.211045 AGTACGCCACTTGTCACAATTT 58.789 40.909 0.00 0.00 31.59 1.82
106 107 2.846193 AGTACGCCACTTGTCACAATT 58.154 42.857 0.00 0.00 31.59 2.32
107 108 2.543777 AGTACGCCACTTGTCACAAT 57.456 45.000 0.00 0.00 31.59 2.71
108 109 2.101082 TGTAGTACGCCACTTGTCACAA 59.899 45.455 0.00 0.00 38.80 3.33
109 110 1.682323 TGTAGTACGCCACTTGTCACA 59.318 47.619 0.00 0.00 38.80 3.58
110 111 2.427232 TGTAGTACGCCACTTGTCAC 57.573 50.000 0.00 0.00 38.80 3.67
111 112 2.297880 ACATGTAGTACGCCACTTGTCA 59.702 45.455 0.00 0.00 38.80 3.58
112 113 2.666508 CACATGTAGTACGCCACTTGTC 59.333 50.000 0.00 0.00 38.80 3.18
113 114 2.683968 CACATGTAGTACGCCACTTGT 58.316 47.619 0.00 9.49 38.80 3.16
114 115 1.393539 GCACATGTAGTACGCCACTTG 59.606 52.381 0.00 8.58 38.80 3.16
115 116 1.001520 TGCACATGTAGTACGCCACTT 59.998 47.619 0.00 0.00 38.80 3.16
116 117 0.606096 TGCACATGTAGTACGCCACT 59.394 50.000 0.00 0.00 41.62 4.00
117 118 1.593006 GATGCACATGTAGTACGCCAC 59.407 52.381 0.00 0.00 0.00 5.01
118 119 1.205893 TGATGCACATGTAGTACGCCA 59.794 47.619 0.00 0.00 0.00 5.69
119 120 1.593006 GTGATGCACATGTAGTACGCC 59.407 52.381 0.00 0.00 34.08 5.68
120 121 2.540515 AGTGATGCACATGTAGTACGC 58.459 47.619 0.00 0.00 36.74 4.42
121 122 3.926527 ACAAGTGATGCACATGTAGTACG 59.073 43.478 6.64 0.00 43.03 3.67
122 123 4.031765 CGACAAGTGATGCACATGTAGTAC 59.968 45.833 8.21 0.00 44.47 2.73
123 124 4.173256 CGACAAGTGATGCACATGTAGTA 58.827 43.478 8.21 0.00 44.47 1.82
124 125 2.995939 CGACAAGTGATGCACATGTAGT 59.004 45.455 8.21 0.00 44.47 2.73
125 126 2.222886 GCGACAAGTGATGCACATGTAG 60.223 50.000 8.21 9.35 44.47 2.74
126 127 1.731709 GCGACAAGTGATGCACATGTA 59.268 47.619 8.21 0.00 44.47 2.29
127 128 0.518636 GCGACAAGTGATGCACATGT 59.481 50.000 7.99 7.99 46.56 3.21
128 129 0.518195 TGCGACAAGTGATGCACATG 59.482 50.000 0.00 0.00 38.74 3.21
129 130 1.069022 GTTGCGACAAGTGATGCACAT 60.069 47.619 0.00 0.00 37.01 3.21
130 131 0.307453 GTTGCGACAAGTGATGCACA 59.693 50.000 0.00 0.00 37.01 4.57
131 132 0.385974 GGTTGCGACAAGTGATGCAC 60.386 55.000 6.39 0.00 37.01 4.57
132 133 0.534877 AGGTTGCGACAAGTGATGCA 60.535 50.000 6.39 0.00 35.15 3.96
133 134 0.110056 CAGGTTGCGACAAGTGATGC 60.110 55.000 6.39 0.00 0.00 3.91
134 135 1.069703 CACAGGTTGCGACAAGTGATG 60.070 52.381 18.40 5.15 35.41 3.07
135 136 1.202639 TCACAGGTTGCGACAAGTGAT 60.203 47.619 20.66 0.42 36.68 3.06
136 137 0.176910 TCACAGGTTGCGACAAGTGA 59.823 50.000 20.66 20.66 38.17 3.41
137 138 0.583438 CTCACAGGTTGCGACAAGTG 59.417 55.000 17.54 17.54 35.00 3.16
138 139 0.178068 ACTCACAGGTTGCGACAAGT 59.822 50.000 6.39 0.32 0.00 3.16
139 140 1.299541 AACTCACAGGTTGCGACAAG 58.700 50.000 6.39 0.00 0.00 3.16
140 141 1.745232 AAACTCACAGGTTGCGACAA 58.255 45.000 6.39 0.00 0.00 3.18
141 142 1.745232 AAAACTCACAGGTTGCGACA 58.255 45.000 6.39 0.00 0.00 4.35
142 143 2.354821 AGAAAAACTCACAGGTTGCGAC 59.645 45.455 0.00 0.00 0.00 5.19
143 144 2.639065 AGAAAAACTCACAGGTTGCGA 58.361 42.857 0.00 0.00 0.00 5.10
144 145 3.420839 AAGAAAAACTCACAGGTTGCG 57.579 42.857 0.00 0.00 0.00 4.85
145 146 5.637387 TGAAAAAGAAAAACTCACAGGTTGC 59.363 36.000 0.00 0.00 0.00 4.17
146 147 7.832503 ATGAAAAAGAAAAACTCACAGGTTG 57.167 32.000 0.00 0.00 0.00 3.77
147 148 8.966868 TCTATGAAAAAGAAAAACTCACAGGTT 58.033 29.630 0.00 0.00 0.00 3.50
148 149 8.519799 TCTATGAAAAAGAAAAACTCACAGGT 57.480 30.769 0.00 0.00 0.00 4.00
149 150 9.971922 AATCTATGAAAAAGAAAAACTCACAGG 57.028 29.630 0.00 0.00 0.00 4.00
188 189 9.167311 GGACACATGATCTAAGTGATAAAACTT 57.833 33.333 16.08 0.00 42.89 2.66
189 190 8.321353 TGGACACATGATCTAAGTGATAAAACT 58.679 33.333 16.08 0.00 37.05 2.66
190 191 8.492673 TGGACACATGATCTAAGTGATAAAAC 57.507 34.615 16.08 4.31 37.05 2.43
191 192 9.513906 TTTGGACACATGATCTAAGTGATAAAA 57.486 29.630 16.08 10.84 37.05 1.52
192 193 9.685276 ATTTGGACACATGATCTAAGTGATAAA 57.315 29.630 16.08 13.33 37.05 1.40
193 194 9.330063 GATTTGGACACATGATCTAAGTGATAA 57.670 33.333 16.08 7.74 37.05 1.75
194 195 8.708378 AGATTTGGACACATGATCTAAGTGATA 58.292 33.333 16.08 3.48 37.05 2.15
195 196 7.571919 AGATTTGGACACATGATCTAAGTGAT 58.428 34.615 16.08 3.05 37.05 3.06
196 197 6.950842 AGATTTGGACACATGATCTAAGTGA 58.049 36.000 16.08 0.00 37.05 3.41
197 198 7.335171 TGAAGATTTGGACACATGATCTAAGTG 59.665 37.037 0.00 10.00 39.12 3.16
198 199 7.397221 TGAAGATTTGGACACATGATCTAAGT 58.603 34.615 0.00 0.00 32.70 2.24
199 200 7.854557 TGAAGATTTGGACACATGATCTAAG 57.145 36.000 0.00 0.00 32.70 2.18
200 201 7.500227 GGATGAAGATTTGGACACATGATCTAA 59.500 37.037 0.00 0.00 32.70 2.10
201 202 6.994496 GGATGAAGATTTGGACACATGATCTA 59.006 38.462 0.00 0.00 32.70 1.98
202 203 5.826737 GGATGAAGATTTGGACACATGATCT 59.173 40.000 0.00 0.00 33.73 2.75
203 204 5.277683 CGGATGAAGATTTGGACACATGATC 60.278 44.000 0.00 0.00 0.00 2.92
204 205 4.577693 CGGATGAAGATTTGGACACATGAT 59.422 41.667 0.00 0.00 0.00 2.45
205 206 3.940852 CGGATGAAGATTTGGACACATGA 59.059 43.478 0.00 0.00 0.00 3.07
206 207 3.691118 ACGGATGAAGATTTGGACACATG 59.309 43.478 0.00 0.00 0.00 3.21
207 208 3.955471 ACGGATGAAGATTTGGACACAT 58.045 40.909 0.00 0.00 0.00 3.21
208 209 3.417069 ACGGATGAAGATTTGGACACA 57.583 42.857 0.00 0.00 0.00 3.72
209 210 4.766404 AAACGGATGAAGATTTGGACAC 57.234 40.909 0.00 0.00 0.00 3.67
210 211 4.824537 TGAAAACGGATGAAGATTTGGACA 59.175 37.500 0.00 0.00 0.00 4.02
211 212 5.048713 AGTGAAAACGGATGAAGATTTGGAC 60.049 40.000 0.00 0.00 0.00 4.02
212 213 5.048782 CAGTGAAAACGGATGAAGATTTGGA 60.049 40.000 0.00 0.00 0.00 3.53
213 214 5.156355 CAGTGAAAACGGATGAAGATTTGG 58.844 41.667 0.00 0.00 0.00 3.28
214 215 5.762045 ACAGTGAAAACGGATGAAGATTTG 58.238 37.500 0.00 0.00 0.00 2.32
215 216 6.039270 TCAACAGTGAAAACGGATGAAGATTT 59.961 34.615 0.00 0.00 0.00 2.17
216 217 5.530915 TCAACAGTGAAAACGGATGAAGATT 59.469 36.000 0.00 0.00 0.00 2.40
217 218 5.063204 TCAACAGTGAAAACGGATGAAGAT 58.937 37.500 0.00 0.00 0.00 2.40
218 219 4.447290 TCAACAGTGAAAACGGATGAAGA 58.553 39.130 0.00 0.00 0.00 2.87
219 220 4.811555 TCAACAGTGAAAACGGATGAAG 57.188 40.909 0.00 0.00 0.00 3.02
220 221 5.766150 ATTCAACAGTGAAAACGGATGAA 57.234 34.783 0.00 4.71 46.66 2.57
221 222 5.278266 GGAATTCAACAGTGAAAACGGATGA 60.278 40.000 7.93 0.00 46.66 2.92
222 223 4.917415 GGAATTCAACAGTGAAAACGGATG 59.083 41.667 7.93 0.00 46.66 3.51
223 224 4.827284 AGGAATTCAACAGTGAAAACGGAT 59.173 37.500 7.93 0.00 46.66 4.18
224 225 4.204012 AGGAATTCAACAGTGAAAACGGA 58.796 39.130 7.93 0.00 46.66 4.69
225 226 4.568152 AGGAATTCAACAGTGAAAACGG 57.432 40.909 7.93 0.00 46.66 4.44
226 227 4.207019 GCAAGGAATTCAACAGTGAAAACG 59.793 41.667 7.93 0.00 46.66 3.60
227 228 5.108517 TGCAAGGAATTCAACAGTGAAAAC 58.891 37.500 7.93 0.00 46.66 2.43
228 229 5.336150 TGCAAGGAATTCAACAGTGAAAA 57.664 34.783 7.93 0.00 46.66 2.29
229 230 4.998671 TGCAAGGAATTCAACAGTGAAA 57.001 36.364 7.93 0.00 46.66 2.69
231 232 5.534207 AAATGCAAGGAATTCAACAGTGA 57.466 34.783 7.93 0.00 0.00 3.41
232 233 7.712264 TTTAAATGCAAGGAATTCAACAGTG 57.288 32.000 7.93 0.00 0.00 3.66
233 234 8.370182 AGATTTAAATGCAAGGAATTCAACAGT 58.630 29.630 5.17 0.00 0.00 3.55
234 235 8.767478 AGATTTAAATGCAAGGAATTCAACAG 57.233 30.769 5.17 0.00 0.00 3.16
312 313 3.065095 TCGGTGTTTTTCGTCCGATTTTT 59.935 39.130 0.97 0.00 45.49 1.94
313 314 2.613133 TCGGTGTTTTTCGTCCGATTTT 59.387 40.909 0.97 0.00 45.49 1.82
314 315 2.211806 TCGGTGTTTTTCGTCCGATTT 58.788 42.857 0.97 0.00 45.49 2.17
315 316 1.868469 TCGGTGTTTTTCGTCCGATT 58.132 45.000 0.97 0.00 45.49 3.34
316 317 3.591979 TCGGTGTTTTTCGTCCGAT 57.408 47.368 0.97 0.00 45.49 4.18
318 319 0.041926 GGTTCGGTGTTTTTCGTCCG 60.042 55.000 0.00 0.00 43.65 4.79
319 320 1.003223 CTGGTTCGGTGTTTTTCGTCC 60.003 52.381 0.00 0.00 0.00 4.79
320 321 1.003223 CCTGGTTCGGTGTTTTTCGTC 60.003 52.381 0.00 0.00 0.00 4.20
321 322 1.018910 CCTGGTTCGGTGTTTTTCGT 58.981 50.000 0.00 0.00 0.00 3.85
322 323 1.263217 CTCCTGGTTCGGTGTTTTTCG 59.737 52.381 0.00 0.00 0.00 3.46
323 324 1.001706 GCTCCTGGTTCGGTGTTTTTC 60.002 52.381 0.00 0.00 0.00 2.29
324 325 1.029681 GCTCCTGGTTCGGTGTTTTT 58.970 50.000 0.00 0.00 0.00 1.94
325 326 0.106918 TGCTCCTGGTTCGGTGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
326 327 0.535102 CTGCTCCTGGTTCGGTGTTT 60.535 55.000 0.00 0.00 0.00 2.83
327 328 1.071471 CTGCTCCTGGTTCGGTGTT 59.929 57.895 0.00 0.00 0.00 3.32
328 329 2.743718 CTGCTCCTGGTTCGGTGT 59.256 61.111 0.00 0.00 0.00 4.16
329 330 2.046892 CCTGCTCCTGGTTCGGTG 60.047 66.667 0.00 0.00 0.00 4.94
330 331 2.147387 AACCTGCTCCTGGTTCGGT 61.147 57.895 0.00 0.00 40.76 4.69
331 332 1.672356 CAACCTGCTCCTGGTTCGG 60.672 63.158 3.88 0.00 42.35 4.30
332 333 1.071471 ACAACCTGCTCCTGGTTCG 59.929 57.895 3.88 3.78 42.35 3.95
333 334 0.108585 TCACAACCTGCTCCTGGTTC 59.891 55.000 3.88 0.00 42.35 3.62
334 335 0.179018 GTCACAACCTGCTCCTGGTT 60.179 55.000 0.00 1.28 44.46 3.67
335 336 1.451936 GTCACAACCTGCTCCTGGT 59.548 57.895 0.00 0.00 37.28 4.00
336 337 1.669115 CGTCACAACCTGCTCCTGG 60.669 63.158 0.00 0.00 0.00 4.45
337 338 0.249868 TTCGTCACAACCTGCTCCTG 60.250 55.000 0.00 0.00 0.00 3.86
338 339 0.249911 GTTCGTCACAACCTGCTCCT 60.250 55.000 0.00 0.00 0.00 3.69
339 340 0.249911 AGTTCGTCACAACCTGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
340 341 1.583054 AAGTTCGTCACAACCTGCTC 58.417 50.000 0.00 0.00 0.00 4.26
341 342 2.038387 AAAGTTCGTCACAACCTGCT 57.962 45.000 0.00 0.00 0.00 4.24
342 343 4.483476 AATAAAGTTCGTCACAACCTGC 57.517 40.909 0.00 0.00 0.00 4.85
373 374 6.298361 AGGCATGGTTTTGCTTCTAATTTTT 58.702 32.000 0.00 0.00 42.38 1.94
374 375 5.868454 AGGCATGGTTTTGCTTCTAATTTT 58.132 33.333 0.00 0.00 42.38 1.82
375 376 5.482006 GAGGCATGGTTTTGCTTCTAATTT 58.518 37.500 0.00 0.00 43.28 1.82
376 377 5.077134 GAGGCATGGTTTTGCTTCTAATT 57.923 39.130 0.00 0.00 43.28 1.40
377 378 4.725790 GAGGCATGGTTTTGCTTCTAAT 57.274 40.909 0.00 0.00 43.28 1.73
381 382 1.135575 CGAGAGGCATGGTTTTGCTTC 60.136 52.381 0.00 0.80 46.00 3.86
382 383 0.883833 CGAGAGGCATGGTTTTGCTT 59.116 50.000 0.00 0.00 42.38 3.91
383 384 0.036732 TCGAGAGGCATGGTTTTGCT 59.963 50.000 0.00 0.00 42.38 3.91
384 385 0.449388 CTCGAGAGGCATGGTTTTGC 59.551 55.000 6.58 0.00 42.01 3.68
385 386 1.089920 CCTCGAGAGGCATGGTTTTG 58.910 55.000 15.71 0.00 42.44 2.44
386 387 3.558674 CCTCGAGAGGCATGGTTTT 57.441 52.632 15.71 0.00 42.44 2.43
411 412 7.642071 TCGCACTAGTATACGTTTTCTTTTT 57.358 32.000 0.00 0.00 0.00 1.94
412 413 7.642071 TTCGCACTAGTATACGTTTTCTTTT 57.358 32.000 0.00 0.00 0.00 2.27
413 414 7.642071 TTTCGCACTAGTATACGTTTTCTTT 57.358 32.000 0.00 0.00 0.00 2.52
414 415 7.383300 ACTTTTCGCACTAGTATACGTTTTCTT 59.617 33.333 0.00 0.00 0.00 2.52
415 416 6.865205 ACTTTTCGCACTAGTATACGTTTTCT 59.135 34.615 0.00 0.00 0.00 2.52
416 417 7.042320 ACTTTTCGCACTAGTATACGTTTTC 57.958 36.000 0.00 0.00 0.00 2.29
417 418 7.359514 GGAACTTTTCGCACTAGTATACGTTTT 60.360 37.037 0.00 0.00 0.00 2.43
418 419 6.089954 GGAACTTTTCGCACTAGTATACGTTT 59.910 38.462 0.00 0.00 0.00 3.60
419 420 5.574443 GGAACTTTTCGCACTAGTATACGTT 59.426 40.000 0.00 0.00 0.00 3.99
420 421 5.098211 GGAACTTTTCGCACTAGTATACGT 58.902 41.667 0.00 0.00 0.00 3.57
421 422 5.097529 TGGAACTTTTCGCACTAGTATACG 58.902 41.667 0.00 0.00 0.00 3.06
422 423 6.956299 TTGGAACTTTTCGCACTAGTATAC 57.044 37.500 0.00 0.00 0.00 1.47
423 424 7.966246 TTTTGGAACTTTTCGCACTAGTATA 57.034 32.000 0.00 0.00 0.00 1.47
424 425 6.870971 TTTTGGAACTTTTCGCACTAGTAT 57.129 33.333 0.00 0.00 0.00 2.12
425 426 6.680874 TTTTTGGAACTTTTCGCACTAGTA 57.319 33.333 0.00 0.00 0.00 1.82
426 427 5.570234 TTTTTGGAACTTTTCGCACTAGT 57.430 34.783 0.00 0.00 0.00 2.57
446 447 8.466798 TCGAAAAGAAGTCAAAGAGGAATTTTT 58.533 29.630 0.00 0.00 0.00 1.94
447 448 7.996385 TCGAAAAGAAGTCAAAGAGGAATTTT 58.004 30.769 0.00 0.00 0.00 1.82
448 449 7.568199 TCGAAAAGAAGTCAAAGAGGAATTT 57.432 32.000 0.00 0.00 0.00 1.82
449 450 7.568199 TTCGAAAAGAAGTCAAAGAGGAATT 57.432 32.000 0.00 0.00 34.26 2.17
450 451 7.568199 TTTCGAAAAGAAGTCAAAGAGGAAT 57.432 32.000 8.44 0.00 40.40 3.01
451 452 6.995511 TTTCGAAAAGAAGTCAAAGAGGAA 57.004 33.333 8.44 0.00 40.40 3.36
452 453 6.995511 TTTTCGAAAAGAAGTCAAAGAGGA 57.004 33.333 19.08 0.00 40.40 3.71
453 454 7.472543 TCTTTTTCGAAAAGAAGTCAAAGAGG 58.527 34.615 21.53 0.00 37.85 3.69
454 455 8.895932 TTCTTTTTCGAAAAGAAGTCAAAGAG 57.104 30.769 21.53 12.86 40.93 2.85
455 456 9.685828 TTTTCTTTTTCGAAAAGAAGTCAAAGA 57.314 25.926 21.53 15.97 44.22 2.52
479 480 8.600449 TTCATGCTATTTTGACCGAAATTTTT 57.400 26.923 0.00 0.00 31.96 1.94
480 481 8.776376 ATTCATGCTATTTTGACCGAAATTTT 57.224 26.923 0.00 0.00 31.96 1.82
481 482 9.520204 CTATTCATGCTATTTTGACCGAAATTT 57.480 29.630 0.00 0.00 31.96 1.82
482 483 8.686334 ACTATTCATGCTATTTTGACCGAAATT 58.314 29.630 1.01 0.00 31.96 1.82
483 484 8.131100 CACTATTCATGCTATTTTGACCGAAAT 58.869 33.333 0.00 1.36 33.95 2.17
484 485 7.335673 TCACTATTCATGCTATTTTGACCGAAA 59.664 33.333 0.00 0.00 0.00 3.46
485 486 6.821160 TCACTATTCATGCTATTTTGACCGAA 59.179 34.615 0.00 0.00 0.00 4.30
486 487 6.345298 TCACTATTCATGCTATTTTGACCGA 58.655 36.000 0.00 0.00 0.00 4.69
487 488 6.603237 TCACTATTCATGCTATTTTGACCG 57.397 37.500 0.00 0.00 0.00 4.79
488 489 8.388484 AGATCACTATTCATGCTATTTTGACC 57.612 34.615 0.00 0.00 0.00 4.02
529 530 5.465935 ACTTCACAGCGAAAAAGACAAAAA 58.534 33.333 0.00 0.00 31.71 1.94
530 531 5.054390 ACTTCACAGCGAAAAAGACAAAA 57.946 34.783 0.00 0.00 31.71 2.44
531 532 4.695217 ACTTCACAGCGAAAAAGACAAA 57.305 36.364 0.00 0.00 31.71 2.83
532 533 4.695217 AACTTCACAGCGAAAAAGACAA 57.305 36.364 0.00 0.00 31.71 3.18
533 534 5.565695 GTTAACTTCACAGCGAAAAAGACA 58.434 37.500 0.00 0.00 31.71 3.41
534 535 4.664851 CGTTAACTTCACAGCGAAAAAGAC 59.335 41.667 3.71 0.00 31.71 3.01
535 536 4.330620 ACGTTAACTTCACAGCGAAAAAGA 59.669 37.500 3.71 0.00 31.71 2.52
536 537 4.584394 ACGTTAACTTCACAGCGAAAAAG 58.416 39.130 3.71 0.00 31.71 2.27
537 538 4.603231 ACGTTAACTTCACAGCGAAAAA 57.397 36.364 3.71 0.00 31.71 1.94
538 539 4.336101 CAACGTTAACTTCACAGCGAAAA 58.664 39.130 0.00 0.00 31.71 2.29
539 540 3.242478 CCAACGTTAACTTCACAGCGAAA 60.242 43.478 0.00 0.00 31.71 3.46
540 541 2.285756 CCAACGTTAACTTCACAGCGAA 59.714 45.455 0.00 0.00 0.00 4.70
541 542 1.862201 CCAACGTTAACTTCACAGCGA 59.138 47.619 0.00 0.00 0.00 4.93
542 543 1.595794 ACCAACGTTAACTTCACAGCG 59.404 47.619 0.00 0.00 0.00 5.18
543 544 3.685836 AACCAACGTTAACTTCACAGC 57.314 42.857 0.00 0.00 0.00 4.40
544 545 6.319399 AGAAAAACCAACGTTAACTTCACAG 58.681 36.000 0.00 0.00 0.00 3.66
545 546 6.256912 AGAAAAACCAACGTTAACTTCACA 57.743 33.333 0.00 0.00 0.00 3.58
546 547 7.411049 CCAAAGAAAAACCAACGTTAACTTCAC 60.411 37.037 0.00 0.00 0.00 3.18
547 548 6.586844 CCAAAGAAAAACCAACGTTAACTTCA 59.413 34.615 0.00 0.00 0.00 3.02
548 549 6.035220 CCCAAAGAAAAACCAACGTTAACTTC 59.965 38.462 0.00 0.29 0.00 3.01
549 550 5.870433 CCCAAAGAAAAACCAACGTTAACTT 59.130 36.000 0.00 0.00 0.00 2.66
550 551 5.047164 ACCCAAAGAAAAACCAACGTTAACT 60.047 36.000 0.00 0.00 0.00 2.24
551 552 5.170021 ACCCAAAGAAAAACCAACGTTAAC 58.830 37.500 0.00 0.00 0.00 2.01
552 553 5.402997 ACCCAAAGAAAAACCAACGTTAA 57.597 34.783 0.00 0.00 0.00 2.01
553 554 5.402997 AACCCAAAGAAAAACCAACGTTA 57.597 34.783 0.00 0.00 0.00 3.18
554 555 3.965379 ACCCAAAGAAAAACCAACGTT 57.035 38.095 0.00 0.00 0.00 3.99
555 556 3.965379 AACCCAAAGAAAAACCAACGT 57.035 38.095 0.00 0.00 0.00 3.99
556 557 6.912203 AATTAACCCAAAGAAAAACCAACG 57.088 33.333 0.00 0.00 0.00 4.10
557 558 8.995220 GGATAATTAACCCAAAGAAAAACCAAC 58.005 33.333 0.24 0.00 0.00 3.77
558 559 8.939932 AGGATAATTAACCCAAAGAAAAACCAA 58.060 29.630 8.09 0.00 0.00 3.67
559 560 8.499288 AGGATAATTAACCCAAAGAAAAACCA 57.501 30.769 8.09 0.00 0.00 3.67
560 561 9.787435 AAAGGATAATTAACCCAAAGAAAAACC 57.213 29.630 8.09 0.00 0.00 3.27
563 564 9.278978 GCAAAAGGATAATTAACCCAAAGAAAA 57.721 29.630 8.09 0.00 0.00 2.29
564 565 7.880713 GGCAAAAGGATAATTAACCCAAAGAAA 59.119 33.333 8.09 0.00 0.00 2.52
565 566 7.390823 GGCAAAAGGATAATTAACCCAAAGAA 58.609 34.615 8.09 0.00 0.00 2.52
566 567 6.070481 GGGCAAAAGGATAATTAACCCAAAGA 60.070 38.462 8.09 0.00 34.82 2.52
602 603 2.819608 GAGGGCAAAACTAAGCACATGA 59.180 45.455 0.00 0.00 36.38 3.07
637 638 0.611714 GACTAGGGGCAAAACCGAGA 59.388 55.000 0.00 0.00 40.62 4.04
641 642 0.958876 CACGGACTAGGGGCAAAACC 60.959 60.000 0.00 0.00 37.93 3.27
1796 1888 2.586425 CGAATGGGCCTAATTGGATGT 58.414 47.619 4.53 0.00 38.35 3.06
2002 2094 2.429610 GCTGAGGCACATTTTCCATGAT 59.570 45.455 0.00 0.00 38.54 2.45
2155 2248 3.066190 CCCACGCGGTCCTGAGTA 61.066 66.667 12.47 0.00 0.00 2.59
2307 2405 2.031258 TGGAAAAACACTCTCACGCA 57.969 45.000 0.00 0.00 0.00 5.24
2399 2497 0.693049 CCCTAGACCAAGTGCCACTT 59.307 55.000 3.74 3.74 39.39 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.