Multiple sequence alignment - TraesCS3A01G493000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G493000 chr3A 100.000 2788 0 0 1 2788 719765432 719762645 0.000000e+00 5149.0
1 TraesCS3A01G493000 chr3A 89.873 79 5 1 1381 1456 719650250 719650172 6.360000e-17 99.0
2 TraesCS3A01G493000 chr3D 87.957 1478 111 40 717 2159 589858839 589857394 0.000000e+00 1681.0
3 TraesCS3A01G493000 chr3D 86.905 168 18 4 2213 2378 126385655 126385490 4.740000e-43 185.0
4 TraesCS3A01G493000 chr3D 84.615 169 21 5 2213 2378 463379783 463379617 2.220000e-36 163.0
5 TraesCS3A01G493000 chr3D 94.737 76 4 0 1381 1456 589767039 589766964 4.880000e-23 119.0
6 TraesCS3A01G493000 chr3D 75.627 279 39 15 1827 2094 589766818 589766558 8.160000e-21 111.0
7 TraesCS3A01G493000 chr5D 91.847 417 27 3 2379 2788 369025863 369025447 2.410000e-160 575.0
8 TraesCS3A01G493000 chr5D 87.500 360 39 5 2432 2788 539078886 539079242 7.190000e-111 411.0
9 TraesCS3A01G493000 chr5D 83.333 174 25 4 2214 2384 42962383 42962555 1.030000e-34 158.0
10 TraesCS3A01G493000 chr3B 89.931 437 26 9 1529 1965 788239844 788239426 5.250000e-152 547.0
11 TraesCS3A01G493000 chr3B 82.126 649 74 19 105 722 788241271 788240634 4.120000e-143 518.0
12 TraesCS3A01G493000 chr3B 93.617 329 13 5 1145 1470 788240255 788239932 4.180000e-133 484.0
13 TraesCS3A01G493000 chr3B 83.862 347 21 11 717 1044 788240606 788240276 5.840000e-77 298.0
14 TraesCS3A01G493000 chr3B 82.123 179 20 6 1700 1867 788231965 788231788 2.890000e-30 143.0
15 TraesCS3A01G493000 chr2B 90.476 420 26 5 2377 2788 601737447 601737034 2.440000e-150 542.0
16 TraesCS3A01G493000 chr6A 89.855 414 33 4 2384 2788 30522849 30522436 8.850000e-145 523.0
17 TraesCS3A01G493000 chr6A 97.938 194 4 0 2595 2788 585970232 585970039 1.240000e-88 337.0
18 TraesCS3A01G493000 chr6A 88.785 214 17 1 2387 2593 585970572 585970359 3.560000e-64 255.0
19 TraesCS3A01G493000 chr6A 96.078 51 2 0 2384 2434 600533629 600533679 1.780000e-12 84.2
20 TraesCS3A01G493000 chr1A 88.630 387 36 3 2410 2788 490470959 490471345 5.440000e-127 464.0
21 TraesCS3A01G493000 chr1A 84.568 162 18 7 2226 2384 437724203 437724046 1.340000e-33 154.0
22 TraesCS3A01G493000 chr5A 88.319 351 24 4 2374 2718 560465805 560466144 3.340000e-109 405.0
23 TraesCS3A01G493000 chr4B 92.181 243 19 0 2546 2788 466693207 466692965 7.390000e-91 344.0
24 TraesCS3A01G493000 chr5B 87.259 259 29 4 2531 2788 680793723 680793978 2.720000e-75 292.0
25 TraesCS3A01G493000 chr2D 80.195 308 37 17 2092 2382 99740760 99740460 2.810000e-50 209.0
26 TraesCS3A01G493000 chr7A 88.235 153 15 3 2227 2377 156321229 156321078 2.210000e-41 180.0
27 TraesCS3A01G493000 chr7A 79.570 279 34 14 2113 2372 681116951 681117225 7.940000e-41 178.0
28 TraesCS3A01G493000 chr7A 97.436 39 1 0 2384 2422 660531802 660531764 1.790000e-07 67.6
29 TraesCS3A01G493000 chrUn 77.287 317 47 13 2092 2384 294376446 294376761 2.220000e-36 163.0
30 TraesCS3A01G493000 chr4A 84.848 165 17 8 2217 2378 702781680 702781839 2.870000e-35 159.0
31 TraesCS3A01G493000 chr4D 94.643 56 3 0 2375 2430 31328635 31328580 1.380000e-13 87.9
32 TraesCS3A01G493000 chr1B 97.059 34 1 0 2392 2425 520521683 520521650 1.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G493000 chr3A 719762645 719765432 2787 True 5149.00 5149 100.0000 1 2788 1 chr3A.!!$R2 2787
1 TraesCS3A01G493000 chr3D 589857394 589858839 1445 True 1681.00 1681 87.9570 717 2159 1 chr3D.!!$R3 1442
2 TraesCS3A01G493000 chr3B 788239426 788241271 1845 True 461.75 547 87.3840 105 1965 4 chr3B.!!$R2 1860
3 TraesCS3A01G493000 chr6A 585970039 585970572 533 True 296.00 337 93.3615 2387 2788 2 chr6A.!!$R2 401

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.117340 ATAGGGGCGCCTCTTAGGAT 59.883 55.0 38.12 20.02 37.67 3.24 F
1476 1573 0.109226 AGTAGCCGCGTTCTTCAGTC 60.109 55.0 4.92 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1575 0.032952 TCAAGCCACACGTACTGACC 59.967 55.0 0.0 0.0 0.00 4.02 R
2549 2706 0.111061 TTGTGTGCAGAGGGCTTCAT 59.889 50.0 0.0 0.0 45.15 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.927895 GAATGCGAGATATAGGGGCG 58.072 55.000 0.00 0.00 0.00 6.13
21 22 1.961180 ATGCGAGATATAGGGGCGCC 61.961 60.000 21.18 21.18 46.36 6.53
22 23 2.352032 GCGAGATATAGGGGCGCCT 61.352 63.158 28.56 27.11 41.65 5.52
23 24 1.810532 CGAGATATAGGGGCGCCTC 59.189 63.158 27.81 25.59 0.00 4.70
24 25 0.681564 CGAGATATAGGGGCGCCTCT 60.682 60.000 35.15 35.15 0.00 3.69
25 26 1.562783 GAGATATAGGGGCGCCTCTT 58.437 55.000 38.12 23.99 0.00 2.85
26 27 2.736347 GAGATATAGGGGCGCCTCTTA 58.264 52.381 38.12 25.35 0.00 2.10
27 28 2.691011 GAGATATAGGGGCGCCTCTTAG 59.309 54.545 38.12 0.00 0.00 2.18
28 29 1.757699 GATATAGGGGCGCCTCTTAGG 59.242 57.143 38.12 0.00 38.80 2.69
29 30 0.781920 TATAGGGGCGCCTCTTAGGA 59.218 55.000 38.12 18.27 37.67 2.94
30 31 0.117340 ATAGGGGCGCCTCTTAGGAT 59.883 55.000 38.12 20.02 37.67 3.24
31 32 0.781920 TAGGGGCGCCTCTTAGGATA 59.218 55.000 38.12 13.30 37.67 2.59
32 33 0.543174 AGGGGCGCCTCTTAGGATAG 60.543 60.000 27.30 0.00 37.67 2.08
33 34 1.293818 GGGCGCCTCTTAGGATAGC 59.706 63.158 28.56 0.00 37.67 2.97
34 35 1.080434 GGCGCCTCTTAGGATAGCG 60.080 63.158 22.15 13.09 42.85 4.26
35 36 4.561731 CGCCTCTTAGGATAGCGC 57.438 61.111 0.00 0.00 37.67 5.92
36 37 1.442857 CGCCTCTTAGGATAGCGCG 60.443 63.158 0.00 0.00 37.67 6.86
37 38 1.660917 GCCTCTTAGGATAGCGCGT 59.339 57.895 8.43 0.00 37.67 6.01
38 39 0.387494 GCCTCTTAGGATAGCGCGTC 60.387 60.000 8.43 4.28 37.67 5.19
39 40 0.952280 CCTCTTAGGATAGCGCGTCA 59.048 55.000 8.43 0.00 37.67 4.35
40 41 1.542030 CCTCTTAGGATAGCGCGTCAT 59.458 52.381 8.43 12.07 37.67 3.06
41 42 2.590073 CTCTTAGGATAGCGCGTCATG 58.410 52.381 8.43 0.00 0.00 3.07
42 43 1.954382 TCTTAGGATAGCGCGTCATGT 59.046 47.619 8.43 0.00 0.00 3.21
43 44 2.054363 CTTAGGATAGCGCGTCATGTG 58.946 52.381 8.43 4.76 0.00 3.21
44 45 1.029681 TAGGATAGCGCGTCATGTGT 58.970 50.000 8.43 0.00 0.00 3.72
45 46 0.528466 AGGATAGCGCGTCATGTGTG 60.528 55.000 8.43 0.00 0.00 3.82
46 47 1.490693 GGATAGCGCGTCATGTGTGG 61.491 60.000 8.43 0.00 0.00 4.17
47 48 2.094126 GATAGCGCGTCATGTGTGGC 62.094 60.000 8.43 0.00 0.00 5.01
48 49 2.578163 ATAGCGCGTCATGTGTGGCT 62.578 55.000 8.43 8.59 34.69 4.75
49 50 2.779951 TAGCGCGTCATGTGTGGCTT 62.780 55.000 8.43 0.00 32.29 4.35
50 51 2.387445 GCGCGTCATGTGTGGCTTA 61.387 57.895 8.43 0.00 0.00 3.09
51 52 1.705337 GCGCGTCATGTGTGGCTTAT 61.705 55.000 8.43 0.00 0.00 1.73
52 53 1.566404 CGCGTCATGTGTGGCTTATA 58.434 50.000 0.00 0.00 0.00 0.98
53 54 2.135139 CGCGTCATGTGTGGCTTATAT 58.865 47.619 0.00 0.00 0.00 0.86
54 55 2.096762 CGCGTCATGTGTGGCTTATATG 60.097 50.000 0.00 0.00 0.00 1.78
55 56 3.130633 GCGTCATGTGTGGCTTATATGA 58.869 45.455 0.00 0.00 0.00 2.15
56 57 3.185188 GCGTCATGTGTGGCTTATATGAG 59.815 47.826 0.00 0.00 0.00 2.90
57 58 4.620982 CGTCATGTGTGGCTTATATGAGA 58.379 43.478 0.00 0.00 0.00 3.27
58 59 4.683320 CGTCATGTGTGGCTTATATGAGAG 59.317 45.833 0.00 0.00 0.00 3.20
59 60 5.507985 CGTCATGTGTGGCTTATATGAGAGA 60.508 44.000 0.00 0.00 0.00 3.10
60 61 6.283694 GTCATGTGTGGCTTATATGAGAGAA 58.716 40.000 0.00 0.00 0.00 2.87
61 62 6.763135 GTCATGTGTGGCTTATATGAGAGAAA 59.237 38.462 0.00 0.00 0.00 2.52
62 63 7.280876 GTCATGTGTGGCTTATATGAGAGAAAA 59.719 37.037 0.00 0.00 0.00 2.29
63 64 7.828717 TCATGTGTGGCTTATATGAGAGAAAAA 59.171 33.333 0.00 0.00 0.00 1.94
125 126 7.542890 CGGAGATAACTATGATTCTGCTACAT 58.457 38.462 0.00 0.00 0.00 2.29
126 127 7.700234 CGGAGATAACTATGATTCTGCTACATC 59.300 40.741 0.00 0.00 0.00 3.06
127 128 8.748412 GGAGATAACTATGATTCTGCTACATCT 58.252 37.037 0.00 0.00 0.00 2.90
129 130 9.087871 AGATAACTATGATTCTGCTACATCTGT 57.912 33.333 0.00 0.00 0.00 3.41
136 137 7.352079 TGATTCTGCTACATCTGTATCTTCA 57.648 36.000 0.00 0.00 0.00 3.02
191 192 5.828299 TCTTTTCAGAAAACGGTTGTGAT 57.172 34.783 4.06 0.00 0.00 3.06
192 193 5.816919 TCTTTTCAGAAAACGGTTGTGATC 58.183 37.500 4.06 0.00 0.00 2.92
193 194 5.588648 TCTTTTCAGAAAACGGTTGTGATCT 59.411 36.000 4.06 0.00 0.00 2.75
203 204 6.668541 AACGGTTGTGATCTTCTGATTATG 57.331 37.500 0.00 0.00 32.19 1.90
210 214 7.916914 TGTGATCTTCTGATTATGCATATGG 57.083 36.000 7.36 0.00 32.19 2.74
230 234 3.332187 TGGAACTACAATGAATGGGTGGA 59.668 43.478 0.00 0.00 0.00 4.02
231 235 4.017591 TGGAACTACAATGAATGGGTGGAT 60.018 41.667 0.00 0.00 0.00 3.41
234 238 4.718961 ACTACAATGAATGGGTGGATAGC 58.281 43.478 0.00 0.00 0.00 2.97
241 245 0.396811 ATGGGTGGATAGCTAACGGC 59.603 55.000 0.00 0.00 42.19 5.68
262 266 5.048504 CGGCAGTGATCCAATAATAGCAAAT 60.049 40.000 0.00 0.00 0.00 2.32
270 274 6.463995 TCCAATAATAGCAAATGTTCCACC 57.536 37.500 0.00 0.00 0.00 4.61
274 278 7.267128 CAATAATAGCAAATGTTCCACCATGT 58.733 34.615 0.00 0.00 0.00 3.21
275 279 5.743636 AATAGCAAATGTTCCACCATGTT 57.256 34.783 0.00 0.00 0.00 2.71
280 284 5.011943 AGCAAATGTTCCACCATGTTAATGT 59.988 36.000 0.00 0.00 31.27 2.71
283 287 3.078097 TGTTCCACCATGTTAATGTCCG 58.922 45.455 0.00 0.00 31.27 4.79
284 288 2.411628 TCCACCATGTTAATGTCCGG 57.588 50.000 0.00 0.00 31.27 5.14
297 301 1.704641 TGTCCGGGGATGTGATAGAG 58.295 55.000 0.00 0.00 0.00 2.43
306 310 6.361433 CGGGGATGTGATAGAGTAGATAGAT 58.639 44.000 0.00 0.00 0.00 1.98
309 313 9.875708 GGGGATGTGATAGAGTAGATAGATATT 57.124 37.037 0.00 0.00 0.00 1.28
319 323 6.535865 AGAGTAGATAGATATTACGACGCTGG 59.464 42.308 0.00 0.00 0.00 4.85
325 329 2.081725 TATTACGACGCTGGCACAAA 57.918 45.000 0.00 0.00 38.70 2.83
326 330 0.796312 ATTACGACGCTGGCACAAAG 59.204 50.000 0.00 0.00 38.70 2.77
329 333 0.884704 ACGACGCTGGCACAAAGAAT 60.885 50.000 0.00 0.00 38.70 2.40
336 340 3.122278 CGCTGGCACAAAGAATGAAAATG 59.878 43.478 0.00 0.00 38.70 2.32
337 341 4.060205 GCTGGCACAAAGAATGAAAATGT 58.940 39.130 0.00 0.00 38.70 2.71
338 342 5.229423 GCTGGCACAAAGAATGAAAATGTA 58.771 37.500 0.00 0.00 38.70 2.29
339 343 5.346822 GCTGGCACAAAGAATGAAAATGTAG 59.653 40.000 0.00 0.00 38.70 2.74
340 344 5.782047 TGGCACAAAGAATGAAAATGTAGG 58.218 37.500 0.00 0.00 31.92 3.18
342 346 6.041409 TGGCACAAAGAATGAAAATGTAGGAA 59.959 34.615 0.00 0.00 31.92 3.36
361 375 9.220906 TGTAGGAAAGAAAGAAATAGGCCTATA 57.779 33.333 25.68 0.52 0.00 1.31
377 391 3.234353 CCTATATCAGGCCTCTGTCACA 58.766 50.000 0.00 0.00 41.59 3.58
378 392 3.837146 CCTATATCAGGCCTCTGTCACAT 59.163 47.826 0.00 0.00 41.59 3.21
393 407 3.002791 GTCACATTCCGAATCTGCTTCA 58.997 45.455 0.00 0.00 33.10 3.02
394 408 3.002791 TCACATTCCGAATCTGCTTCAC 58.997 45.455 0.00 0.00 33.10 3.18
428 442 0.447406 TGCGTGCACACATCTTATGC 59.553 50.000 18.64 9.09 39.88 3.14
434 448 1.658373 GCACACATCTTATGCGCGATG 60.658 52.381 12.10 17.90 42.03 3.84
435 449 0.583438 ACACATCTTATGCGCGATGC 59.417 50.000 19.00 0.00 40.43 3.91
447 461 3.554692 CGATGCGCCAAGACGACC 61.555 66.667 4.18 0.00 34.06 4.79
448 462 2.125512 GATGCGCCAAGACGACCT 60.126 61.111 4.18 0.00 34.06 3.85
449 463 2.125512 ATGCGCCAAGACGACCTC 60.126 61.111 4.18 0.00 34.06 3.85
450 464 2.835701 GATGCGCCAAGACGACCTCA 62.836 60.000 4.18 0.00 34.06 3.86
457 472 2.419297 GCCAAGACGACCTCATCAAGAT 60.419 50.000 0.00 0.00 0.00 2.40
458 473 3.866651 CCAAGACGACCTCATCAAGATT 58.133 45.455 0.00 0.00 0.00 2.40
459 474 3.620374 CCAAGACGACCTCATCAAGATTG 59.380 47.826 0.00 0.00 0.00 2.67
479 496 0.482446 TGCCAGGTTCCCACAGAATT 59.518 50.000 0.00 0.00 36.69 2.17
490 507 6.070824 GGTTCCCACAGAATTAATTCCATTGT 60.071 38.462 21.86 17.13 36.69 2.71
492 509 8.527810 GTTCCCACAGAATTAATTCCATTGTAA 58.472 33.333 21.86 10.26 36.69 2.41
496 513 8.405531 CCACAGAATTAATTCCATTGTAATCGT 58.594 33.333 21.86 0.00 37.51 3.73
514 531 0.782384 GTACACGCTTGTTCGTCTGG 59.218 55.000 0.00 0.00 41.21 3.86
515 532 0.942410 TACACGCTTGTTCGTCTGGC 60.942 55.000 0.00 0.00 41.21 4.85
516 533 2.665185 ACGCTTGTTCGTCTGGCC 60.665 61.111 0.00 0.00 38.44 5.36
526 543 2.987125 GTCTGGCCCACGTACCAT 59.013 61.111 0.00 0.00 34.82 3.55
531 548 1.227853 GGCCCACGTACCATCCATC 60.228 63.158 0.00 0.00 0.00 3.51
540 557 4.024893 CACGTACCATCCATCTGTATTTGC 60.025 45.833 0.00 0.00 0.00 3.68
545 562 3.559069 CATCCATCTGTATTTGCCCACT 58.441 45.455 0.00 0.00 0.00 4.00
548 565 3.091545 CCATCTGTATTTGCCCACTTGT 58.908 45.455 0.00 0.00 0.00 3.16
561 578 3.259123 GCCCACTTGTTCCATTTTCTGAT 59.741 43.478 0.00 0.00 0.00 2.90
569 586 6.653526 TGTTCCATTTTCTGATGACATTGT 57.346 33.333 0.00 0.00 0.00 2.71
573 590 7.528996 TCCATTTTCTGATGACATTGTTCTT 57.471 32.000 0.00 0.00 0.00 2.52
577 594 5.947228 TTCTGATGACATTGTTCTTCACC 57.053 39.130 0.00 0.00 0.00 4.02
601 624 4.962155 ACAGCTACTTGTGAAACTAAGCT 58.038 39.130 0.00 0.00 38.16 3.74
611 634 5.312895 TGTGAAACTAAGCTTGCATTCCTA 58.687 37.500 9.86 0.24 38.04 2.94
615 638 7.910683 GTGAAACTAAGCTTGCATTCCTATTAC 59.089 37.037 9.86 1.36 0.00 1.89
623 646 6.541641 AGCTTGCATTCCTATTACTTCTTCAG 59.458 38.462 0.00 0.00 0.00 3.02
627 650 9.466497 TTGCATTCCTATTACTTCTTCAGATTT 57.534 29.630 0.00 0.00 0.00 2.17
643 666 5.305585 TCAGATTTAGGCGGGAAATATGAC 58.694 41.667 12.63 0.00 38.77 3.06
654 677 1.586578 GAAATATGACGCGTTCGCTCA 59.413 47.619 15.53 6.62 39.84 4.26
695 723 4.888038 ACAAGCTACATATGCATGTGTG 57.112 40.909 32.07 23.34 45.17 3.82
707 735 2.022808 CATGTGTGCACGTTCTGTTC 57.977 50.000 13.13 0.00 0.00 3.18
732 792 2.294791 CTCTCAGAGAACGGTGTCTGTT 59.705 50.000 25.14 0.00 43.89 3.16
752 812 4.142403 TGTTTGAAGTCTGAACCTTGCTTG 60.142 41.667 0.00 0.00 0.00 4.01
797 857 3.711348 GCTTGCAGCTAGCTACGG 58.289 61.111 18.86 9.96 45.94 4.02
838 911 1.285962 ACATGATTCCTGACCTTGGGG 59.714 52.381 0.00 0.00 38.88 4.96
847 920 1.000771 GACCTTGGGGGCTCCTTTC 60.001 63.158 4.32 0.00 37.73 2.62
862 935 3.224007 TTTCCCCCTTGCTCCTGCC 62.224 63.158 0.00 0.00 38.71 4.85
867 940 4.044439 CCTTGCTCCTGCCCAGCT 62.044 66.667 0.91 0.00 37.79 4.24
904 977 1.747355 CAATGCCATTGTCTCTGTCCC 59.253 52.381 9.30 0.00 35.57 4.46
927 1000 2.464403 AAGGAACCTGGCCAGCAGT 61.464 57.895 28.39 17.99 0.00 4.40
969 1048 3.782046 CAATAGTCTACACAAGGGACCG 58.218 50.000 0.00 0.00 0.00 4.79
1024 1103 3.044059 GACAATGCTGCCGAGGTGC 62.044 63.158 0.00 3.16 0.00 5.01
1068 1157 2.748461 TTGCCGTTGTTCTTTTCTCG 57.252 45.000 0.00 0.00 0.00 4.04
1082 1171 2.542020 TTCTCGGCACAACATTCAGA 57.458 45.000 0.00 0.00 0.00 3.27
1094 1183 6.140786 CACAACATTCAGACTTGACTCAATG 58.859 40.000 0.00 0.00 31.71 2.82
1225 1314 2.361757 AGCTGATCGAGTTCATGGAGAG 59.638 50.000 0.00 0.00 0.00 3.20
1226 1315 2.100584 GCTGATCGAGTTCATGGAGAGT 59.899 50.000 0.00 0.00 0.00 3.24
1306 1395 4.273148 ACGAGCTCATCCAGTAAGTTTT 57.727 40.909 15.40 0.00 0.00 2.43
1320 1412 5.987347 CAGTAAGTTTTCTCCGAACCTTACA 59.013 40.000 18.04 0.00 31.09 2.41
1335 1427 5.571784 ACCTTACATGCATTCAGTTCATG 57.428 39.130 0.00 0.00 42.27 3.07
1344 1436 3.486375 GCATTCAGTTCATGTCCATCGTG 60.486 47.826 0.00 0.00 34.61 4.35
1356 1453 2.096565 GTCCATCGTGCATTCATCATCG 60.097 50.000 0.00 0.00 0.00 3.84
1454 1551 0.243907 CAGGAGGTGTACACGGTGAG 59.756 60.000 19.41 6.02 0.00 3.51
1455 1552 0.178970 AGGAGGTGTACACGGTGAGT 60.179 55.000 19.41 0.00 0.00 3.41
1456 1553 0.677842 GGAGGTGTACACGGTGAGTT 59.322 55.000 19.41 0.00 0.00 3.01
1457 1554 1.888512 GGAGGTGTACACGGTGAGTTA 59.111 52.381 19.41 0.00 0.00 2.24
1460 1557 3.753272 GAGGTGTACACGGTGAGTTAGTA 59.247 47.826 19.41 0.00 0.00 1.82
1472 1569 2.183636 GAGTTAGTAGCCGCGTTCTTC 58.816 52.381 4.92 0.00 0.00 2.87
1473 1570 1.542915 AGTTAGTAGCCGCGTTCTTCA 59.457 47.619 4.92 0.00 0.00 3.02
1474 1571 1.918609 GTTAGTAGCCGCGTTCTTCAG 59.081 52.381 4.92 0.00 0.00 3.02
1476 1573 0.109226 AGTAGCCGCGTTCTTCAGTC 60.109 55.000 4.92 0.00 0.00 3.51
1478 1575 2.537792 TAGCCGCGTTCTTCAGTCCG 62.538 60.000 4.92 0.00 0.00 4.79
1479 1576 2.809601 CCGCGTTCTTCAGTCCGG 60.810 66.667 4.92 0.00 0.00 5.14
1481 1578 2.087009 CGCGTTCTTCAGTCCGGTC 61.087 63.158 0.00 0.00 0.00 4.79
1482 1579 1.006571 GCGTTCTTCAGTCCGGTCA 60.007 57.895 0.00 0.00 0.00 4.02
1483 1580 1.009389 GCGTTCTTCAGTCCGGTCAG 61.009 60.000 0.00 0.00 0.00 3.51
1484 1581 0.314302 CGTTCTTCAGTCCGGTCAGT 59.686 55.000 0.00 0.00 0.00 3.41
1485 1582 1.538512 CGTTCTTCAGTCCGGTCAGTA 59.461 52.381 0.00 0.00 0.00 2.74
1487 1584 1.162698 TCTTCAGTCCGGTCAGTACG 58.837 55.000 0.00 0.00 0.00 3.67
1488 1585 0.879765 CTTCAGTCCGGTCAGTACGT 59.120 55.000 0.00 0.00 0.00 3.57
1489 1586 0.594602 TTCAGTCCGGTCAGTACGTG 59.405 55.000 0.00 0.00 0.00 4.49
1490 1587 0.535780 TCAGTCCGGTCAGTACGTGT 60.536 55.000 0.00 0.00 0.00 4.49
1491 1588 0.386858 CAGTCCGGTCAGTACGTGTG 60.387 60.000 0.00 0.00 0.00 3.82
1492 1589 1.080974 GTCCGGTCAGTACGTGTGG 60.081 63.158 0.00 0.00 0.00 4.17
1494 1591 2.649034 CGGTCAGTACGTGTGGCT 59.351 61.111 0.00 0.00 0.00 4.75
1495 1592 1.006571 CGGTCAGTACGTGTGGCTT 60.007 57.895 0.00 0.00 0.00 4.35
1496 1593 1.282248 CGGTCAGTACGTGTGGCTTG 61.282 60.000 0.00 0.00 0.00 4.01
1499 1596 2.413837 GTCAGTACGTGTGGCTTGAAT 58.586 47.619 0.00 0.00 0.00 2.57
1500 1597 2.412089 GTCAGTACGTGTGGCTTGAATC 59.588 50.000 0.00 0.00 0.00 2.52
1504 1601 0.670546 ACGTGTGGCTTGAATCGAGG 60.671 55.000 0.00 0.00 0.00 4.63
1510 1607 2.115291 GCTTGAATCGAGGGGGTGC 61.115 63.158 0.00 0.00 0.00 5.01
1511 1608 1.604378 CTTGAATCGAGGGGGTGCT 59.396 57.895 0.00 0.00 0.00 4.40
1513 1610 1.198094 TTGAATCGAGGGGGTGCTCA 61.198 55.000 0.00 0.00 0.00 4.26
1515 1612 0.533755 GAATCGAGGGGGTGCTCATG 60.534 60.000 0.00 0.00 0.00 3.07
1517 1614 1.274703 ATCGAGGGGGTGCTCATGTT 61.275 55.000 0.00 0.00 0.00 2.71
1518 1615 1.450312 CGAGGGGGTGCTCATGTTC 60.450 63.158 0.00 0.00 0.00 3.18
1519 1616 1.450312 GAGGGGGTGCTCATGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
1520 1617 2.185310 GAGGGGGTGCTCATGTTCGT 62.185 60.000 0.00 0.00 0.00 3.85
1553 1679 3.953775 CACCACAAGGCGGGGAGT 61.954 66.667 0.00 0.00 39.06 3.85
1778 1904 2.026905 GCCTTCCTTGTCCACACCAAA 61.027 52.381 0.00 0.00 0.00 3.28
1794 1920 2.932614 ACCAAAAAGCTCTGATCGATCG 59.067 45.455 20.03 9.36 0.00 3.69
1829 1955 9.250246 TCAACCGAGTGATTGTATATGGATATA 57.750 33.333 0.00 0.00 0.00 0.86
1856 1984 4.222114 GCAGTAAAATAATGCGATGGCTC 58.778 43.478 0.15 0.00 40.08 4.70
1871 1999 1.486310 TGGCTCGGCTCAAATACTGAT 59.514 47.619 0.00 0.00 32.14 2.90
1877 2005 2.799562 CGGCTCAAATACTGATGCGAGA 60.800 50.000 0.00 0.00 32.14 4.04
1885 2013 7.243487 TCAAATACTGATGCGAGAACAAATTC 58.757 34.615 0.00 0.00 34.78 2.17
1904 2052 8.292448 ACAAATTCAACTGCAGTAATTGACTAG 58.708 33.333 22.01 12.45 35.64 2.57
1905 2053 7.986085 AATTCAACTGCAGTAATTGACTAGT 57.014 32.000 22.01 2.88 35.64 2.57
1906 2054 9.502091 AAATTCAACTGCAGTAATTGACTAGTA 57.498 29.630 22.01 5.34 35.64 1.82
1907 2055 9.502091 AATTCAACTGCAGTAATTGACTAGTAA 57.498 29.630 22.01 4.61 35.64 2.24
1908 2056 8.896320 TTCAACTGCAGTAATTGACTAGTAAA 57.104 30.769 22.01 0.00 35.64 2.01
1909 2057 8.306680 TCAACTGCAGTAATTGACTAGTAAAC 57.693 34.615 22.01 0.00 35.64 2.01
1910 2058 7.929245 TCAACTGCAGTAATTGACTAGTAAACA 59.071 33.333 22.01 0.00 35.64 2.83
1911 2059 8.556194 CAACTGCAGTAATTGACTAGTAAACAA 58.444 33.333 22.01 0.00 35.64 2.83
1912 2060 8.311650 ACTGCAGTAATTGACTAGTAAACAAG 57.688 34.615 20.16 0.00 35.64 3.16
1913 2061 8.148351 ACTGCAGTAATTGACTAGTAAACAAGA 58.852 33.333 20.16 0.00 35.64 3.02
1914 2062 8.534333 TGCAGTAATTGACTAGTAAACAAGAG 57.466 34.615 0.00 0.00 35.64 2.85
1915 2063 8.148351 TGCAGTAATTGACTAGTAAACAAGAGT 58.852 33.333 0.00 0.00 35.64 3.24
1916 2064 9.635520 GCAGTAATTGACTAGTAAACAAGAGTA 57.364 33.333 0.00 0.00 35.64 2.59
1965 2114 6.902224 ATTTGTAATAAAAAGAATGGCGGC 57.098 33.333 0.00 0.00 0.00 6.53
1966 2115 4.379339 TGTAATAAAAAGAATGGCGGCC 57.621 40.909 13.32 13.32 0.00 6.13
1995 2145 3.005578 GGTTAGCTGGACGGGTAGAATAG 59.994 52.174 0.00 0.00 0.00 1.73
2032 2182 1.065109 GCACAAACACACGGGGAAC 59.935 57.895 0.00 0.00 0.00 3.62
2050 2200 4.394712 CCAGGGGAGTGGCGTGTC 62.395 72.222 0.00 0.00 0.00 3.67
2051 2201 4.394712 CAGGGGAGTGGCGTGTCC 62.395 72.222 0.00 0.00 0.00 4.02
2076 2226 3.055385 CCACCGAAAATAGAGACCAGGAA 60.055 47.826 0.00 0.00 0.00 3.36
2078 2228 4.081642 CACCGAAAATAGAGACCAGGAAGA 60.082 45.833 0.00 0.00 0.00 2.87
2107 2257 8.644374 AAGGCACACCACTCTATATTTAAAAA 57.356 30.769 0.00 0.00 39.06 1.94
2160 2310 9.824534 ACATTCTGAAAATGTTTTTGAACAAAC 57.175 25.926 0.00 0.00 37.58 2.93
2161 2311 9.276397 CATTCTGAAAATGTTTTTGAACAAACC 57.724 29.630 0.00 0.00 36.03 3.27
2162 2312 8.614469 TTCTGAAAATGTTTTTGAACAAACCT 57.386 26.923 0.00 0.00 36.03 3.50
2163 2313 8.027440 TCTGAAAATGTTTTTGAACAAACCTG 57.973 30.769 0.00 0.00 36.03 4.00
2164 2314 7.875041 TCTGAAAATGTTTTTGAACAAACCTGA 59.125 29.630 0.00 0.00 36.03 3.86
2165 2315 7.801752 TGAAAATGTTTTTGAACAAACCTGAC 58.198 30.769 0.00 0.00 36.03 3.51
2166 2316 6.735678 AAATGTTTTTGAACAAACCTGACC 57.264 33.333 0.00 0.00 36.03 4.02
2167 2317 5.675684 ATGTTTTTGAACAAACCTGACCT 57.324 34.783 0.00 0.00 36.03 3.85
2168 2318 5.476091 TGTTTTTGAACAAACCTGACCTT 57.524 34.783 0.00 0.00 36.03 3.50
2169 2319 5.474825 TGTTTTTGAACAAACCTGACCTTC 58.525 37.500 0.00 0.00 36.03 3.46
2170 2320 5.245075 TGTTTTTGAACAAACCTGACCTTCT 59.755 36.000 0.00 0.00 36.03 2.85
2171 2321 6.434652 TGTTTTTGAACAAACCTGACCTTCTA 59.565 34.615 0.00 0.00 36.03 2.10
2172 2322 7.123547 TGTTTTTGAACAAACCTGACCTTCTAT 59.876 33.333 0.00 0.00 36.03 1.98
2173 2323 7.654022 TTTTGAACAAACCTGACCTTCTATT 57.346 32.000 0.00 0.00 0.00 1.73
2174 2324 6.633500 TTGAACAAACCTGACCTTCTATTG 57.367 37.500 0.00 0.00 0.00 1.90
2175 2325 5.690865 TGAACAAACCTGACCTTCTATTGT 58.309 37.500 0.00 0.00 0.00 2.71
2176 2326 6.833041 TGAACAAACCTGACCTTCTATTGTA 58.167 36.000 0.00 0.00 0.00 2.41
2177 2327 6.708949 TGAACAAACCTGACCTTCTATTGTAC 59.291 38.462 0.00 0.00 0.00 2.90
2178 2328 6.435292 ACAAACCTGACCTTCTATTGTACT 57.565 37.500 0.00 0.00 0.00 2.73
2179 2329 6.838382 ACAAACCTGACCTTCTATTGTACTT 58.162 36.000 0.00 0.00 0.00 2.24
2180 2330 6.710744 ACAAACCTGACCTTCTATTGTACTTG 59.289 38.462 0.00 0.00 0.00 3.16
2181 2331 6.435292 AACCTGACCTTCTATTGTACTTGT 57.565 37.500 0.00 0.00 0.00 3.16
2182 2332 6.435292 ACCTGACCTTCTATTGTACTTGTT 57.565 37.500 0.00 0.00 0.00 2.83
2183 2333 6.838382 ACCTGACCTTCTATTGTACTTGTTT 58.162 36.000 0.00 0.00 0.00 2.83
2184 2334 7.970102 ACCTGACCTTCTATTGTACTTGTTTA 58.030 34.615 0.00 0.00 0.00 2.01
2185 2335 8.434392 ACCTGACCTTCTATTGTACTTGTTTAA 58.566 33.333 0.00 0.00 0.00 1.52
2186 2336 9.280174 CCTGACCTTCTATTGTACTTGTTTAAA 57.720 33.333 0.00 0.00 0.00 1.52
2210 2360 8.725405 AAAAATCACAAAAATAAAACTCCCGT 57.275 26.923 0.00 0.00 0.00 5.28
2211 2361 8.725405 AAAATCACAAAAATAAAACTCCCGTT 57.275 26.923 0.00 0.00 34.03 4.44
2212 2362 7.707774 AATCACAAAAATAAAACTCCCGTTG 57.292 32.000 0.00 0.00 32.65 4.10
2213 2363 6.452494 TCACAAAAATAAAACTCCCGTTGA 57.548 33.333 0.00 0.00 32.65 3.18
2214 2364 6.267070 TCACAAAAATAAAACTCCCGTTGAC 58.733 36.000 0.00 0.00 32.65 3.18
2215 2365 6.037098 CACAAAAATAAAACTCCCGTTGACA 58.963 36.000 0.00 0.00 32.65 3.58
2216 2366 6.531948 CACAAAAATAAAACTCCCGTTGACAA 59.468 34.615 0.00 0.00 32.65 3.18
2217 2367 7.063544 CACAAAAATAAAACTCCCGTTGACAAA 59.936 33.333 0.00 0.00 32.65 2.83
2218 2368 7.603024 ACAAAAATAAAACTCCCGTTGACAAAA 59.397 29.630 0.00 0.00 32.65 2.44
2219 2369 8.608317 CAAAAATAAAACTCCCGTTGACAAAAT 58.392 29.630 0.00 0.00 32.65 1.82
2220 2370 8.725405 AAAATAAAACTCCCGTTGACAAAATT 57.275 26.923 0.00 0.00 32.65 1.82
2221 2371 7.940178 AATAAAACTCCCGTTGACAAAATTC 57.060 32.000 0.00 0.00 32.65 2.17
2222 2372 5.592104 AAAACTCCCGTTGACAAAATTCT 57.408 34.783 0.00 0.00 32.65 2.40
2223 2373 4.830826 AACTCCCGTTGACAAAATTCTC 57.169 40.909 0.00 0.00 30.67 2.87
2224 2374 3.815809 ACTCCCGTTGACAAAATTCTCA 58.184 40.909 0.00 0.00 0.00 3.27
2225 2375 3.815401 ACTCCCGTTGACAAAATTCTCAG 59.185 43.478 0.00 0.00 0.00 3.35
2226 2376 3.815401 CTCCCGTTGACAAAATTCTCAGT 59.185 43.478 0.00 0.00 0.00 3.41
2227 2377 3.813166 TCCCGTTGACAAAATTCTCAGTC 59.187 43.478 0.00 0.00 0.00 3.51
2228 2378 3.563808 CCCGTTGACAAAATTCTCAGTCA 59.436 43.478 0.00 0.00 39.06 3.41
2229 2379 4.036262 CCCGTTGACAAAATTCTCAGTCAA 59.964 41.667 0.00 0.00 45.57 3.18
2236 2386 9.734620 TTGACAAAATTCTCAGTCAAAATAGTG 57.265 29.630 4.55 0.00 45.01 2.74
2237 2387 8.902806 TGACAAAATTCTCAGTCAAAATAGTGT 58.097 29.630 0.00 0.00 37.99 3.55
2238 2388 9.173939 GACAAAATTCTCAGTCAAAATAGTGTG 57.826 33.333 0.00 0.00 0.00 3.82
2239 2389 8.902806 ACAAAATTCTCAGTCAAAATAGTGTGA 58.097 29.630 0.00 0.00 0.00 3.58
2240 2390 9.734620 CAAAATTCTCAGTCAAAATAGTGTGAA 57.265 29.630 0.00 0.00 36.97 3.18
2244 2394 9.950496 ATTCTCAGTCAAAATAGTGTGAATAGT 57.050 29.630 7.03 0.00 39.47 2.12
2245 2395 8.763049 TCTCAGTCAAAATAGTGTGAATAGTG 57.237 34.615 0.00 0.00 0.00 2.74
2246 2396 8.585018 TCTCAGTCAAAATAGTGTGAATAGTGA 58.415 33.333 0.00 0.00 0.00 3.41
2247 2397 8.534333 TCAGTCAAAATAGTGTGAATAGTGAC 57.466 34.615 0.00 0.00 34.46 3.67
2248 2398 7.602644 TCAGTCAAAATAGTGTGAATAGTGACC 59.397 37.037 0.00 0.00 34.73 4.02
2249 2399 7.604164 CAGTCAAAATAGTGTGAATAGTGACCT 59.396 37.037 0.00 0.00 34.73 3.85
2250 2400 8.812972 AGTCAAAATAGTGTGAATAGTGACCTA 58.187 33.333 0.00 0.00 34.73 3.08
2251 2401 9.601217 GTCAAAATAGTGTGAATAGTGACCTAT 57.399 33.333 0.00 0.00 35.33 2.57
2257 2407 6.525629 AGTGTGAATAGTGACCTATAATGGC 58.474 40.000 0.00 0.00 32.57 4.40
2258 2408 6.099701 AGTGTGAATAGTGACCTATAATGGCA 59.900 38.462 0.00 0.00 32.57 4.92
2259 2409 6.765989 GTGTGAATAGTGACCTATAATGGCAA 59.234 38.462 0.00 0.00 32.57 4.52
2260 2410 7.445402 GTGTGAATAGTGACCTATAATGGCAAT 59.555 37.037 0.00 0.00 32.57 3.56
2261 2411 8.655901 TGTGAATAGTGACCTATAATGGCAATA 58.344 33.333 0.00 0.00 32.57 1.90
2262 2412 9.502091 GTGAATAGTGACCTATAATGGCAATAA 57.498 33.333 0.00 0.00 32.57 1.40
2293 2443 4.647424 TTTTGCCCTAAAGTCAACACTG 57.353 40.909 0.00 0.00 31.06 3.66
2294 2444 2.270352 TGCCCTAAAGTCAACACTGG 57.730 50.000 0.00 0.00 31.06 4.00
2295 2445 1.493022 TGCCCTAAAGTCAACACTGGT 59.507 47.619 0.00 0.00 31.06 4.00
2296 2446 2.092103 TGCCCTAAAGTCAACACTGGTT 60.092 45.455 0.00 0.00 37.87 3.67
2297 2447 2.956333 GCCCTAAAGTCAACACTGGTTT 59.044 45.455 0.00 0.00 34.21 3.27
2298 2448 3.383505 GCCCTAAAGTCAACACTGGTTTT 59.616 43.478 0.00 0.00 34.21 2.43
2299 2449 4.142026 GCCCTAAAGTCAACACTGGTTTTT 60.142 41.667 0.00 0.00 34.21 1.94
2360 2510 9.628500 AGTCAAGTTTATTCTAAAACAACCTCT 57.372 29.630 2.68 0.00 40.97 3.69
2361 2511 9.880064 GTCAAGTTTATTCTAAAACAACCTCTC 57.120 33.333 2.68 0.00 40.97 3.20
2362 2512 9.621629 TCAAGTTTATTCTAAAACAACCTCTCA 57.378 29.630 2.68 0.00 40.97 3.27
2365 2515 9.628500 AGTTTATTCTAAAACAACCTCTCAACT 57.372 29.630 2.68 0.00 40.97 3.16
2368 2518 7.881775 ATTCTAAAACAACCTCTCAACTTGT 57.118 32.000 0.00 0.00 0.00 3.16
2369 2519 7.696992 TTCTAAAACAACCTCTCAACTTGTT 57.303 32.000 0.00 0.00 39.30 2.83
2370 2520 7.696992 TCTAAAACAACCTCTCAACTTGTTT 57.303 32.000 2.63 2.63 45.58 2.83
2373 2523 4.110036 ACAACCTCTCAACTTGTTTTGC 57.890 40.909 0.00 0.00 0.00 3.68
2374 2524 3.763897 ACAACCTCTCAACTTGTTTTGCT 59.236 39.130 0.00 0.00 0.00 3.91
2375 2525 4.220602 ACAACCTCTCAACTTGTTTTGCTT 59.779 37.500 0.00 0.00 0.00 3.91
2376 2526 5.170748 CAACCTCTCAACTTGTTTTGCTTT 58.829 37.500 0.00 0.00 0.00 3.51
2377 2527 5.405935 ACCTCTCAACTTGTTTTGCTTTT 57.594 34.783 0.00 0.00 0.00 2.27
2378 2528 6.524101 ACCTCTCAACTTGTTTTGCTTTTA 57.476 33.333 0.00 0.00 0.00 1.52
2379 2529 7.112452 ACCTCTCAACTTGTTTTGCTTTTAT 57.888 32.000 0.00 0.00 0.00 1.40
2380 2530 7.555965 ACCTCTCAACTTGTTTTGCTTTTATT 58.444 30.769 0.00 0.00 0.00 1.40
2381 2531 8.040727 ACCTCTCAACTTGTTTTGCTTTTATTT 58.959 29.630 0.00 0.00 0.00 1.40
2382 2532 8.882736 CCTCTCAACTTGTTTTGCTTTTATTTT 58.117 29.630 0.00 0.00 0.00 1.82
2385 2535 9.618410 CTCAACTTGTTTTGCTTTTATTTTACG 57.382 29.630 0.00 0.00 0.00 3.18
2407 2557 2.945668 AGAATGCTATTTTCCTGCCGAC 59.054 45.455 0.00 0.00 0.00 4.79
2446 2603 1.588139 GTACGAGCCGTTGGATCCG 60.588 63.158 7.39 0.00 41.54 4.18
2453 2610 1.878522 CCGTTGGATCCGCTTCTCG 60.879 63.158 7.39 5.32 38.08 4.04
2485 2642 0.093705 CGCTTGTTCAGTTCTAGCGC 59.906 55.000 0.00 0.00 45.52 5.92
2518 2675 6.919721 AGCTACCGAAAAATAAAATGAAGCA 58.080 32.000 0.00 0.00 0.00 3.91
2539 2696 1.553248 CCAATAGGAGTCGAACCCACA 59.447 52.381 7.05 0.00 36.89 4.17
2543 2700 1.052124 AGGAGTCGAACCCACAACCA 61.052 55.000 7.05 0.00 0.00 3.67
2549 2706 1.133761 TCGAACCCACAACCAATTGGA 60.134 47.619 31.22 0.27 40.42 3.53
2558 2715 2.181975 CAACCAATTGGATGAAGCCCT 58.818 47.619 31.22 1.67 40.03 5.19
2563 2720 0.627451 ATTGGATGAAGCCCTCTGCA 59.373 50.000 0.00 0.00 44.83 4.41
2565 2722 1.300963 GGATGAAGCCCTCTGCACA 59.699 57.895 0.00 0.00 44.83 4.57
2574 2731 1.455383 CCCTCTGCACACAACCAACC 61.455 60.000 0.00 0.00 0.00 3.77
2593 2750 6.540914 ACCAACCGGTACATATAAATGTTCTG 59.459 38.462 8.00 0.00 46.71 3.02
2723 3005 5.045012 AGGACTGATGCATCATGTTGTAT 57.955 39.130 28.81 12.63 36.02 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.517832 GCGCCCCTATATCTCGCAT 59.482 57.895 0.00 0.00 44.50 4.73
3 4 2.646175 GGCGCCCCTATATCTCGCA 61.646 63.158 18.11 0.00 46.60 5.10
4 5 2.184579 GGCGCCCCTATATCTCGC 59.815 66.667 18.11 0.00 44.39 5.03
5 6 0.681564 AGAGGCGCCCCTATATCTCG 60.682 60.000 26.15 0.00 43.12 4.04
7 8 2.624557 CCTAAGAGGCGCCCCTATATCT 60.625 54.545 26.15 15.90 43.12 1.98
8 9 1.757699 CCTAAGAGGCGCCCCTATATC 59.242 57.143 26.15 13.49 43.12 1.63
9 10 1.361543 TCCTAAGAGGCGCCCCTATAT 59.638 52.381 26.15 3.90 43.12 0.86
10 11 0.781920 TCCTAAGAGGCGCCCCTATA 59.218 55.000 26.15 10.98 43.12 1.31
11 12 0.117340 ATCCTAAGAGGCGCCCCTAT 59.883 55.000 26.15 10.35 43.12 2.57
12 13 0.781920 TATCCTAAGAGGCGCCCCTA 59.218 55.000 26.15 11.29 43.12 3.53
13 14 0.543174 CTATCCTAAGAGGCGCCCCT 60.543 60.000 26.15 15.94 46.74 4.79
14 15 1.976112 CTATCCTAAGAGGCGCCCC 59.024 63.158 26.15 12.96 34.61 5.80
15 16 1.293818 GCTATCCTAAGAGGCGCCC 59.706 63.158 26.15 15.34 34.61 6.13
16 17 1.080434 CGCTATCCTAAGAGGCGCC 60.080 63.158 21.89 21.89 39.83 6.53
17 18 4.561731 CGCTATCCTAAGAGGCGC 57.438 61.111 0.00 0.00 39.83 6.53
18 19 1.442857 CGCGCTATCCTAAGAGGCG 60.443 63.158 5.56 0.00 45.13 5.52
19 20 0.387494 GACGCGCTATCCTAAGAGGC 60.387 60.000 5.73 0.00 34.61 4.70
20 21 0.952280 TGACGCGCTATCCTAAGAGG 59.048 55.000 5.73 0.00 36.46 3.69
21 22 2.030717 ACATGACGCGCTATCCTAAGAG 60.031 50.000 5.73 0.00 0.00 2.85
22 23 1.954382 ACATGACGCGCTATCCTAAGA 59.046 47.619 5.73 0.00 0.00 2.10
23 24 2.054363 CACATGACGCGCTATCCTAAG 58.946 52.381 5.73 0.00 0.00 2.18
24 25 1.407618 ACACATGACGCGCTATCCTAA 59.592 47.619 5.73 0.00 0.00 2.69
25 26 1.029681 ACACATGACGCGCTATCCTA 58.970 50.000 5.73 0.00 0.00 2.94
26 27 0.528466 CACACATGACGCGCTATCCT 60.528 55.000 5.73 0.00 0.00 3.24
27 28 1.490693 CCACACATGACGCGCTATCC 61.491 60.000 5.73 0.00 0.00 2.59
28 29 1.927210 CCACACATGACGCGCTATC 59.073 57.895 5.73 3.35 0.00 2.08
29 30 2.173669 GCCACACATGACGCGCTAT 61.174 57.895 5.73 0.00 0.00 2.97
30 31 2.779951 AAGCCACACATGACGCGCTA 62.780 55.000 5.73 0.00 0.00 4.26
31 32 2.779951 TAAGCCACACATGACGCGCT 62.780 55.000 5.73 0.00 0.00 5.92
32 33 1.705337 ATAAGCCACACATGACGCGC 61.705 55.000 5.73 0.00 0.00 6.86
33 34 1.566404 TATAAGCCACACATGACGCG 58.434 50.000 3.53 3.53 0.00 6.01
34 35 3.130633 TCATATAAGCCACACATGACGC 58.869 45.455 0.00 0.00 0.00 5.19
35 36 4.620982 TCTCATATAAGCCACACATGACG 58.379 43.478 0.00 0.00 0.00 4.35
36 37 5.847304 TCTCTCATATAAGCCACACATGAC 58.153 41.667 0.00 0.00 0.00 3.06
37 38 6.484364 TTCTCTCATATAAGCCACACATGA 57.516 37.500 0.00 0.00 0.00 3.07
38 39 7.558161 TTTTCTCTCATATAAGCCACACATG 57.442 36.000 0.00 0.00 0.00 3.21
94 95 7.467267 GCAGAATCATAGTTATCTCCGCAAAAA 60.467 37.037 0.00 0.00 0.00 1.94
95 96 6.017934 GCAGAATCATAGTTATCTCCGCAAAA 60.018 38.462 0.00 0.00 0.00 2.44
96 97 5.466728 GCAGAATCATAGTTATCTCCGCAAA 59.533 40.000 0.00 0.00 0.00 3.68
97 98 4.991056 GCAGAATCATAGTTATCTCCGCAA 59.009 41.667 0.00 0.00 0.00 4.85
98 99 4.281941 AGCAGAATCATAGTTATCTCCGCA 59.718 41.667 0.00 0.00 0.00 5.69
99 100 4.815269 AGCAGAATCATAGTTATCTCCGC 58.185 43.478 0.00 0.00 0.00 5.54
100 101 6.914259 TGTAGCAGAATCATAGTTATCTCCG 58.086 40.000 0.00 0.00 0.00 4.63
101 102 8.748412 AGATGTAGCAGAATCATAGTTATCTCC 58.252 37.037 0.00 0.00 0.00 3.71
102 103 9.571810 CAGATGTAGCAGAATCATAGTTATCTC 57.428 37.037 0.00 0.00 0.00 2.75
103 104 9.087871 ACAGATGTAGCAGAATCATAGTTATCT 57.912 33.333 0.00 0.00 0.00 1.98
107 108 9.087871 AGATACAGATGTAGCAGAATCATAGTT 57.912 33.333 10.56 0.00 39.22 2.24
108 109 8.648698 AGATACAGATGTAGCAGAATCATAGT 57.351 34.615 10.56 0.00 39.22 2.12
109 110 9.571810 GAAGATACAGATGTAGCAGAATCATAG 57.428 37.037 10.56 0.00 39.22 2.23
145 146 9.965902 AGAAGTCCAGAATATCTGTTTGTAAAT 57.034 29.630 6.62 0.00 42.80 1.40
146 147 9.793259 AAGAAGTCCAGAATATCTGTTTGTAAA 57.207 29.630 6.62 0.00 42.80 2.01
178 179 7.530010 CATAATCAGAAGATCACAACCGTTTT 58.470 34.615 0.00 0.00 31.90 2.43
191 192 8.650490 TGTAGTTCCATATGCATAATCAGAAGA 58.350 33.333 11.13 0.00 0.00 2.87
192 193 8.837788 TGTAGTTCCATATGCATAATCAGAAG 57.162 34.615 11.13 0.00 0.00 2.85
193 194 9.797642 ATTGTAGTTCCATATGCATAATCAGAA 57.202 29.630 11.13 8.47 0.00 3.02
203 204 5.536161 ACCCATTCATTGTAGTTCCATATGC 59.464 40.000 0.00 0.00 0.00 3.14
210 214 5.239525 GCTATCCACCCATTCATTGTAGTTC 59.760 44.000 0.00 0.00 0.00 3.01
223 227 0.978667 TGCCGTTAGCTATCCACCCA 60.979 55.000 0.00 0.00 44.23 4.51
230 234 2.039418 TGGATCACTGCCGTTAGCTAT 58.961 47.619 0.00 0.00 44.23 2.97
231 235 1.480789 TGGATCACTGCCGTTAGCTA 58.519 50.000 0.00 0.00 44.23 3.32
234 238 5.120830 GCTATTATTGGATCACTGCCGTTAG 59.879 44.000 0.00 0.00 0.00 2.34
241 245 7.864379 GGAACATTTGCTATTATTGGATCACTG 59.136 37.037 0.00 0.00 0.00 3.66
262 266 3.078097 CGGACATTAACATGGTGGAACA 58.922 45.455 0.00 0.00 39.98 3.18
270 274 2.618241 CACATCCCCGGACATTAACATG 59.382 50.000 0.73 0.00 36.34 3.21
274 278 4.228010 TCTATCACATCCCCGGACATTAA 58.772 43.478 0.73 0.00 0.00 1.40
275 279 3.832490 CTCTATCACATCCCCGGACATTA 59.168 47.826 0.73 0.00 0.00 1.90
280 284 2.714793 TCTACTCTATCACATCCCCGGA 59.285 50.000 0.73 0.00 0.00 5.14
283 287 9.875708 AATATCTATCTACTCTATCACATCCCC 57.124 37.037 0.00 0.00 0.00 4.81
297 301 5.163784 TGCCAGCGTCGTAATATCTATCTAC 60.164 44.000 0.00 0.00 0.00 2.59
306 310 1.996898 CTTTGTGCCAGCGTCGTAATA 59.003 47.619 0.00 0.00 0.00 0.98
309 313 0.249531 TTCTTTGTGCCAGCGTCGTA 60.250 50.000 0.00 0.00 0.00 3.43
310 314 0.884704 ATTCTTTGTGCCAGCGTCGT 60.885 50.000 0.00 0.00 0.00 4.34
312 316 0.874390 TCATTCTTTGTGCCAGCGTC 59.126 50.000 0.00 0.00 0.00 5.19
319 323 7.867403 TCTTTCCTACATTTTCATTCTTTGTGC 59.133 33.333 0.00 0.00 0.00 4.57
338 342 8.949421 TGATATAGGCCTATTTCTTTCTTTCCT 58.051 33.333 31.17 10.42 0.00 3.36
339 343 9.225436 CTGATATAGGCCTATTTCTTTCTTTCC 57.775 37.037 31.17 12.71 0.00 3.13
340 344 9.225436 CCTGATATAGGCCTATTTCTTTCTTTC 57.775 37.037 31.17 14.05 40.38 2.62
361 375 1.211457 GGAATGTGACAGAGGCCTGAT 59.789 52.381 12.00 0.00 43.02 2.90
370 384 2.625737 AGCAGATTCGGAATGTGACAG 58.374 47.619 26.47 5.51 34.30 3.51
377 391 4.446371 CTTAGGTGAAGCAGATTCGGAAT 58.554 43.478 2.19 2.19 41.14 3.01
378 392 3.861840 CTTAGGTGAAGCAGATTCGGAA 58.138 45.455 0.00 0.00 41.14 4.30
434 448 2.125512 ATGAGGTCGTCTTGGCGC 60.126 61.111 0.00 0.00 0.00 6.53
435 449 0.389817 TTGATGAGGTCGTCTTGGCG 60.390 55.000 1.05 0.00 33.19 5.69
436 450 1.066858 TCTTGATGAGGTCGTCTTGGC 60.067 52.381 1.05 0.00 33.19 4.52
437 451 3.533606 ATCTTGATGAGGTCGTCTTGG 57.466 47.619 1.05 0.00 33.19 3.61
438 452 4.092529 CACAATCTTGATGAGGTCGTCTTG 59.907 45.833 0.00 0.40 33.19 3.02
439 453 4.248859 CACAATCTTGATGAGGTCGTCTT 58.751 43.478 0.00 0.00 33.19 3.01
440 454 3.854666 CACAATCTTGATGAGGTCGTCT 58.145 45.455 0.00 0.00 33.19 4.18
441 455 2.349886 GCACAATCTTGATGAGGTCGTC 59.650 50.000 0.00 0.00 0.00 4.20
442 456 2.350522 GCACAATCTTGATGAGGTCGT 58.649 47.619 0.00 0.00 0.00 4.34
443 457 1.667724 GGCACAATCTTGATGAGGTCG 59.332 52.381 0.00 0.00 0.00 4.79
444 458 2.681848 CTGGCACAATCTTGATGAGGTC 59.318 50.000 0.00 0.00 38.70 3.85
445 459 2.619849 CCTGGCACAATCTTGATGAGGT 60.620 50.000 0.00 0.00 38.70 3.85
446 460 2.022195 CCTGGCACAATCTTGATGAGG 58.978 52.381 0.00 0.00 38.70 3.86
447 461 2.719739 ACCTGGCACAATCTTGATGAG 58.280 47.619 0.00 0.00 38.70 2.90
448 462 2.885135 ACCTGGCACAATCTTGATGA 57.115 45.000 0.00 0.00 38.70 2.92
449 463 2.165030 GGAACCTGGCACAATCTTGATG 59.835 50.000 0.00 0.00 38.70 3.07
450 464 2.450476 GGAACCTGGCACAATCTTGAT 58.550 47.619 0.00 0.00 38.70 2.57
459 474 8.508555 GAATTAATTCTGTGGGAACCTGGCAC 62.509 46.154 18.99 0.00 40.87 5.01
479 496 6.044046 AGCGTGTACGATTACAATGGAATTA 58.956 36.000 8.82 0.00 40.00 1.40
490 507 2.910482 GACGAACAAGCGTGTACGATTA 59.090 45.455 5.50 0.00 46.84 1.75
492 509 1.068748 AGACGAACAAGCGTGTACGAT 60.069 47.619 5.50 0.00 45.72 3.73
496 513 0.942410 GCCAGACGAACAAGCGTGTA 60.942 55.000 5.50 0.00 45.72 2.90
514 531 0.532862 CAGATGGATGGTACGTGGGC 60.533 60.000 0.00 0.00 0.00 5.36
515 532 0.830648 ACAGATGGATGGTACGTGGG 59.169 55.000 0.00 0.00 0.00 4.61
516 533 4.336889 AATACAGATGGATGGTACGTGG 57.663 45.455 0.00 0.00 0.00 4.94
526 543 3.245229 ACAAGTGGGCAAATACAGATGGA 60.245 43.478 0.00 0.00 0.00 3.41
531 548 2.890311 TGGAACAAGTGGGCAAATACAG 59.110 45.455 0.00 0.00 31.92 2.74
548 565 7.528996 AGAACAATGTCATCAGAAAATGGAA 57.471 32.000 0.00 0.00 0.00 3.53
561 578 3.130633 CTGTCGGTGAAGAACAATGTCA 58.869 45.455 0.00 0.00 0.00 3.58
569 586 2.364324 ACAAGTAGCTGTCGGTGAAGAA 59.636 45.455 0.00 0.00 0.00 2.52
573 590 1.324383 TCACAAGTAGCTGTCGGTGA 58.676 50.000 0.00 2.57 33.31 4.02
577 594 4.143305 GCTTAGTTTCACAAGTAGCTGTCG 60.143 45.833 0.00 0.00 0.00 4.35
601 624 9.466497 AAATCTGAAGAAGTAATAGGAATGCAA 57.534 29.630 0.00 0.00 0.00 4.08
611 634 5.130477 TCCCGCCTAAATCTGAAGAAGTAAT 59.870 40.000 0.00 0.00 0.00 1.89
615 638 3.543680 TCCCGCCTAAATCTGAAGAAG 57.456 47.619 0.00 0.00 0.00 2.85
623 646 3.120304 GCGTCATATTTCCCGCCTAAATC 60.120 47.826 0.00 0.00 40.25 2.17
627 650 0.319211 CGCGTCATATTTCCCGCCTA 60.319 55.000 0.00 0.00 42.99 3.93
654 677 2.752903 GTGGGGAATGTAGCGAAATGTT 59.247 45.455 0.00 0.00 0.00 2.71
693 721 1.527311 GAGAAGGAACAGAACGTGCAC 59.473 52.381 6.82 6.82 0.00 4.57
695 723 2.062519 GAGAGAAGGAACAGAACGTGC 58.937 52.381 0.00 0.00 0.00 5.34
732 792 2.951642 CCAAGCAAGGTTCAGACTTCAA 59.048 45.455 0.00 0.00 0.00 2.69
796 856 0.655733 CCATTGTCGCACGGTATTCC 59.344 55.000 0.00 0.00 0.00 3.01
797 857 0.027586 GCCATTGTCGCACGGTATTC 59.972 55.000 0.00 0.00 0.00 1.75
838 911 2.363018 GCAAGGGGGAAAGGAGCC 60.363 66.667 0.00 0.00 0.00 4.70
897 970 0.472471 GGTTCCTTGTGTGGGACAGA 59.528 55.000 0.00 0.00 41.80 3.41
904 977 1.152777 TGGCCAGGTTCCTTGTGTG 60.153 57.895 0.00 0.00 0.00 3.82
969 1048 1.401905 GAAATGCAGGAACGGATGGTC 59.598 52.381 0.00 0.00 0.00 4.02
1045 1124 3.705604 AGAAAAGAACAACGGCAATGTG 58.294 40.909 0.00 0.00 0.00 3.21
1068 1157 2.880890 AGTCAAGTCTGAATGTTGTGCC 59.119 45.455 0.00 0.00 31.88 5.01
1082 1171 4.757149 GTGCTTAGGTTCATTGAGTCAAGT 59.243 41.667 11.91 0.00 0.00 3.16
1124 1213 5.034852 TCTTCTCCACAACTGTTTGATCA 57.965 39.130 0.00 0.00 36.48 2.92
1132 1221 1.610102 CCTGGCTCTTCTCCACAACTG 60.610 57.143 0.00 0.00 0.00 3.16
1138 1227 3.393970 CGGCCTGGCTCTTCTCCA 61.394 66.667 19.68 0.00 0.00 3.86
1306 1395 3.055458 TGAATGCATGTAAGGTTCGGAGA 60.055 43.478 0.00 0.00 0.00 3.71
1320 1412 3.314357 CGATGGACATGAACTGAATGCAT 59.686 43.478 0.00 0.00 0.00 3.96
1335 1427 2.096565 CGATGATGAATGCACGATGGAC 60.097 50.000 0.00 0.00 0.00 4.02
1344 1436 1.082300 CAGCGGCGATGATGAATGC 60.082 57.895 22.19 0.00 0.00 3.56
1371 1468 1.078848 CTCGCAGAACTTCCTGGGG 60.079 63.158 0.00 0.00 44.31 4.96
1372 1469 1.078848 CCTCGCAGAACTTCCTGGG 60.079 63.158 0.00 0.00 45.17 4.45
1373 1470 0.108424 CTCCTCGCAGAACTTCCTGG 60.108 60.000 0.00 0.00 34.09 4.45
1454 1551 1.918609 CTGAAGAACGCGGCTACTAAC 59.081 52.381 12.47 3.26 0.00 2.34
1455 1552 1.542915 ACTGAAGAACGCGGCTACTAA 59.457 47.619 12.47 0.00 0.00 2.24
1456 1553 1.131883 GACTGAAGAACGCGGCTACTA 59.868 52.381 12.47 0.00 0.00 1.82
1457 1554 0.109226 GACTGAAGAACGCGGCTACT 60.109 55.000 12.47 0.41 0.00 2.57
1460 1557 2.048127 GGACTGAAGAACGCGGCT 60.048 61.111 12.47 4.12 0.00 5.52
1472 1569 0.386858 CACACGTACTGACCGGACTG 60.387 60.000 9.46 9.25 0.00 3.51
1473 1570 1.521450 CCACACGTACTGACCGGACT 61.521 60.000 9.46 0.00 0.00 3.85
1474 1571 1.080974 CCACACGTACTGACCGGAC 60.081 63.158 9.46 1.07 0.00 4.79
1476 1573 2.430382 AAGCCACACGTACTGACCGG 62.430 60.000 0.00 0.00 0.00 5.28
1478 1575 0.032952 TCAAGCCACACGTACTGACC 59.967 55.000 0.00 0.00 0.00 4.02
1479 1576 1.860676 TTCAAGCCACACGTACTGAC 58.139 50.000 0.00 0.00 0.00 3.51
1481 1578 1.390123 CGATTCAAGCCACACGTACTG 59.610 52.381 0.00 0.00 0.00 2.74
1482 1579 1.271379 TCGATTCAAGCCACACGTACT 59.729 47.619 0.00 0.00 0.00 2.73
1483 1580 1.654105 CTCGATTCAAGCCACACGTAC 59.346 52.381 0.00 0.00 0.00 3.67
1484 1581 1.403647 CCTCGATTCAAGCCACACGTA 60.404 52.381 0.00 0.00 0.00 3.57
1485 1582 0.670546 CCTCGATTCAAGCCACACGT 60.671 55.000 0.00 0.00 0.00 4.49
1487 1584 1.026718 CCCCTCGATTCAAGCCACAC 61.027 60.000 0.00 0.00 0.00 3.82
1488 1585 1.299648 CCCCTCGATTCAAGCCACA 59.700 57.895 0.00 0.00 0.00 4.17
1489 1586 1.452108 CCCCCTCGATTCAAGCCAC 60.452 63.158 0.00 0.00 0.00 5.01
1490 1587 1.923395 ACCCCCTCGATTCAAGCCA 60.923 57.895 0.00 0.00 0.00 4.75
1491 1588 1.452108 CACCCCCTCGATTCAAGCC 60.452 63.158 0.00 0.00 0.00 4.35
1492 1589 2.115291 GCACCCCCTCGATTCAAGC 61.115 63.158 0.00 0.00 0.00 4.01
1494 1591 1.198094 TGAGCACCCCCTCGATTCAA 61.198 55.000 0.00 0.00 34.56 2.69
1495 1592 0.982852 ATGAGCACCCCCTCGATTCA 60.983 55.000 0.00 0.00 34.56 2.57
1496 1593 0.533755 CATGAGCACCCCCTCGATTC 60.534 60.000 0.00 0.00 34.56 2.52
1499 1596 1.899437 GAACATGAGCACCCCCTCGA 61.899 60.000 0.00 0.00 34.56 4.04
1500 1597 1.450312 GAACATGAGCACCCCCTCG 60.450 63.158 0.00 0.00 34.56 4.63
1504 1601 1.302511 ACACGAACATGAGCACCCC 60.303 57.895 0.00 0.00 0.00 4.95
1510 1607 1.667830 ACGCCCACACGAACATGAG 60.668 57.895 0.00 0.00 36.70 2.90
1511 1608 1.958715 CACGCCCACACGAACATGA 60.959 57.895 0.00 0.00 36.70 3.07
1513 1610 3.353836 GCACGCCCACACGAACAT 61.354 61.111 0.00 0.00 36.70 2.71
1515 1612 4.012895 CTGCACGCCCACACGAAC 62.013 66.667 0.00 0.00 36.70 3.95
1517 1614 4.228567 TTCTGCACGCCCACACGA 62.229 61.111 0.00 0.00 36.70 4.35
1518 1615 3.716006 CTTCTGCACGCCCACACG 61.716 66.667 0.00 0.00 39.50 4.49
1519 1616 4.030452 GCTTCTGCACGCCCACAC 62.030 66.667 0.00 0.00 39.41 3.82
1520 1617 4.560743 TGCTTCTGCACGCCCACA 62.561 61.111 0.00 0.00 45.31 4.17
1709 1835 2.711922 GGTGTCGTCGGAGAGCCAT 61.712 63.158 0.00 0.00 36.95 4.40
1766 1892 2.023673 CAGAGCTTTTTGGTGTGGACA 58.976 47.619 0.00 0.00 34.34 4.02
1794 1920 3.510388 TCACTCGGTTGAGACATGATC 57.490 47.619 0.00 0.00 45.57 2.92
1829 1955 5.507817 CCATCGCATTATTTTACTGCCACAT 60.508 40.000 0.00 0.00 32.24 3.21
1830 1956 4.202000 CCATCGCATTATTTTACTGCCACA 60.202 41.667 0.00 0.00 32.24 4.17
1856 1984 1.524355 CTCGCATCAGTATTTGAGCCG 59.476 52.381 0.00 0.00 39.68 5.52
1871 1999 2.357323 TGCAGTTGAATTTGTTCTCGCA 59.643 40.909 0.00 0.00 0.00 5.10
1877 2005 7.491682 AGTCAATTACTGCAGTTGAATTTGTT 58.508 30.769 27.06 9.74 36.93 2.83
1885 2013 8.083462 TGTTTACTAGTCAATTACTGCAGTTG 57.917 34.615 27.06 17.64 39.39 3.16
1904 2052 5.578727 CCAGCAGTCTGATACTCTTGTTTAC 59.421 44.000 3.32 0.00 42.95 2.01
1905 2053 5.337571 CCCAGCAGTCTGATACTCTTGTTTA 60.338 44.000 3.32 0.00 42.95 2.01
1906 2054 4.564406 CCCAGCAGTCTGATACTCTTGTTT 60.564 45.833 3.32 0.00 42.95 2.83
1907 2055 3.055530 CCCAGCAGTCTGATACTCTTGTT 60.056 47.826 3.32 0.00 42.95 2.83
1908 2056 2.499289 CCCAGCAGTCTGATACTCTTGT 59.501 50.000 3.32 0.00 42.95 3.16
1909 2057 2.499289 ACCCAGCAGTCTGATACTCTTG 59.501 50.000 3.32 0.00 42.95 3.02
1910 2058 2.826488 ACCCAGCAGTCTGATACTCTT 58.174 47.619 3.32 0.00 42.95 2.85
1911 2059 2.541233 ACCCAGCAGTCTGATACTCT 57.459 50.000 3.32 0.00 42.95 3.24
1912 2060 3.618690 AAACCCAGCAGTCTGATACTC 57.381 47.619 3.32 0.00 42.95 2.59
1913 2061 4.373156 AAAAACCCAGCAGTCTGATACT 57.627 40.909 3.32 0.00 42.95 2.12
1965 2114 1.439679 GTCCAGCTAACCTTCGTTGG 58.560 55.000 0.00 0.00 33.17 3.77
1966 2115 1.068474 CGTCCAGCTAACCTTCGTTG 58.932 55.000 0.00 0.00 33.17 4.10
1995 2145 3.128764 GTGCCTTGCCTTTGGAGTATTAC 59.871 47.826 0.00 0.00 0.00 1.89
2050 2200 3.007635 GGTCTCTATTTTCGGTGGTTGG 58.992 50.000 0.00 0.00 0.00 3.77
2051 2201 3.670625 TGGTCTCTATTTTCGGTGGTTG 58.329 45.455 0.00 0.00 0.00 3.77
2135 2285 9.276397 GGTTTGTTCAAAAACATTTTCAGAATG 57.724 29.630 0.00 0.00 44.59 2.67
2153 2303 6.935208 AGTACAATAGAAGGTCAGGTTTGTTC 59.065 38.462 0.00 0.00 0.00 3.18
2156 2306 6.710744 ACAAGTACAATAGAAGGTCAGGTTTG 59.289 38.462 0.00 0.00 0.00 2.93
2159 2309 6.435292 AACAAGTACAATAGAAGGTCAGGT 57.565 37.500 0.00 0.00 0.00 4.00
2160 2310 8.842358 TTAAACAAGTACAATAGAAGGTCAGG 57.158 34.615 0.00 0.00 0.00 3.86
2185 2335 8.725405 ACGGGAGTTTTATTTTTGTGATTTTT 57.275 26.923 0.00 0.00 43.33 1.94
2204 2354 3.815401 ACTGAGAATTTTGTCAACGGGAG 59.185 43.478 0.00 0.00 29.49 4.30
2205 2355 3.813166 GACTGAGAATTTTGTCAACGGGA 59.187 43.478 0.00 0.00 29.49 5.14
2206 2356 3.563808 TGACTGAGAATTTTGTCAACGGG 59.436 43.478 0.00 0.00 36.64 5.28
2207 2357 4.811555 TGACTGAGAATTTTGTCAACGG 57.188 40.909 0.00 0.00 36.64 4.44
2208 2358 7.684062 ATTTTGACTGAGAATTTTGTCAACG 57.316 32.000 6.86 0.00 45.32 4.10
2209 2359 9.736023 ACTATTTTGACTGAGAATTTTGTCAAC 57.264 29.630 6.86 2.09 45.32 3.18
2210 2360 9.734620 CACTATTTTGACTGAGAATTTTGTCAA 57.265 29.630 0.00 0.00 44.41 3.18
2211 2361 8.902806 ACACTATTTTGACTGAGAATTTTGTCA 58.097 29.630 0.00 0.00 37.62 3.58
2212 2362 9.173939 CACACTATTTTGACTGAGAATTTTGTC 57.826 33.333 0.00 0.00 0.00 3.18
2213 2363 8.902806 TCACACTATTTTGACTGAGAATTTTGT 58.097 29.630 0.00 0.00 0.00 2.83
2214 2364 9.734620 TTCACACTATTTTGACTGAGAATTTTG 57.265 29.630 0.00 0.00 0.00 2.44
2218 2368 9.950496 ACTATTCACACTATTTTGACTGAGAAT 57.050 29.630 0.00 0.00 0.00 2.40
2219 2369 9.208022 CACTATTCACACTATTTTGACTGAGAA 57.792 33.333 0.00 0.00 0.00 2.87
2220 2370 8.585018 TCACTATTCACACTATTTTGACTGAGA 58.415 33.333 0.00 0.00 0.00 3.27
2221 2371 8.651588 GTCACTATTCACACTATTTTGACTGAG 58.348 37.037 0.00 0.00 0.00 3.35
2222 2372 7.602644 GGTCACTATTCACACTATTTTGACTGA 59.397 37.037 0.00 0.00 33.05 3.41
2223 2373 7.604164 AGGTCACTATTCACACTATTTTGACTG 59.396 37.037 0.00 0.00 33.05 3.51
2224 2374 7.680730 AGGTCACTATTCACACTATTTTGACT 58.319 34.615 0.00 0.00 33.05 3.41
2225 2375 7.907214 AGGTCACTATTCACACTATTTTGAC 57.093 36.000 0.00 0.00 0.00 3.18
2231 2381 8.314751 GCCATTATAGGTCACTATTCACACTAT 58.685 37.037 0.00 0.00 40.35 2.12
2232 2382 7.289084 TGCCATTATAGGTCACTATTCACACTA 59.711 37.037 0.00 0.00 40.35 2.74
2233 2383 6.099701 TGCCATTATAGGTCACTATTCACACT 59.900 38.462 0.00 0.00 40.35 3.55
2234 2384 6.288294 TGCCATTATAGGTCACTATTCACAC 58.712 40.000 0.00 0.00 40.35 3.82
2235 2385 6.493189 TGCCATTATAGGTCACTATTCACA 57.507 37.500 0.00 0.00 40.35 3.58
2236 2386 7.986085 ATTGCCATTATAGGTCACTATTCAC 57.014 36.000 0.00 0.00 40.35 3.18
2271 2421 4.142049 CCAGTGTTGACTTTAGGGCAAAAA 60.142 41.667 0.00 0.00 45.57 1.94
2272 2422 3.383185 CCAGTGTTGACTTTAGGGCAAAA 59.617 43.478 0.00 0.00 45.57 2.44
2273 2423 2.955660 CCAGTGTTGACTTTAGGGCAAA 59.044 45.455 0.00 0.00 45.57 3.68
2274 2424 2.092103 ACCAGTGTTGACTTTAGGGCAA 60.092 45.455 0.00 0.00 41.27 4.52
2275 2425 1.493022 ACCAGTGTTGACTTTAGGGCA 59.507 47.619 0.00 0.00 0.00 5.36
2276 2426 2.271944 ACCAGTGTTGACTTTAGGGC 57.728 50.000 0.00 0.00 0.00 5.19
2277 2427 5.592104 AAAAACCAGTGTTGACTTTAGGG 57.408 39.130 0.00 0.00 34.13 3.53
2334 2484 9.628500 AGAGGTTGTTTTAGAATAAACTTGACT 57.372 29.630 0.00 0.00 34.52 3.41
2335 2485 9.880064 GAGAGGTTGTTTTAGAATAAACTTGAC 57.120 33.333 0.00 0.00 34.52 3.18
2336 2486 9.621629 TGAGAGGTTGTTTTAGAATAAACTTGA 57.378 29.630 0.00 0.00 34.52 3.02
2339 2489 9.628500 AGTTGAGAGGTTGTTTTAGAATAAACT 57.372 29.630 0.00 0.00 36.72 2.66
2342 2492 9.403583 ACAAGTTGAGAGGTTGTTTTAGAATAA 57.596 29.630 10.54 0.00 30.07 1.40
2343 2493 8.974060 ACAAGTTGAGAGGTTGTTTTAGAATA 57.026 30.769 10.54 0.00 30.07 1.75
2344 2494 7.881775 ACAAGTTGAGAGGTTGTTTTAGAAT 57.118 32.000 10.54 0.00 30.07 2.40
2345 2495 7.696992 AACAAGTTGAGAGGTTGTTTTAGAA 57.303 32.000 10.54 0.00 40.64 2.10
2346 2496 7.696992 AAACAAGTTGAGAGGTTGTTTTAGA 57.303 32.000 10.54 0.00 46.98 2.10
2351 2501 4.220602 AGCAAAACAAGTTGAGAGGTTGTT 59.779 37.500 10.54 1.80 44.35 2.83
2352 2502 3.763897 AGCAAAACAAGTTGAGAGGTTGT 59.236 39.130 10.54 0.00 35.93 3.32
2353 2503 4.376340 AGCAAAACAAGTTGAGAGGTTG 57.624 40.909 10.54 7.04 0.00 3.77
2354 2504 5.405935 AAAGCAAAACAAGTTGAGAGGTT 57.594 34.783 10.54 5.56 0.00 3.50
2355 2505 5.405935 AAAAGCAAAACAAGTTGAGAGGT 57.594 34.783 10.54 0.00 0.00 3.85
2356 2506 8.424274 AAATAAAAGCAAAACAAGTTGAGAGG 57.576 30.769 10.54 0.00 0.00 3.69
2359 2509 9.618410 CGTAAAATAAAAGCAAAACAAGTTGAG 57.382 29.630 10.54 0.00 0.00 3.02
2360 2510 9.355215 TCGTAAAATAAAAGCAAAACAAGTTGA 57.645 25.926 10.54 0.00 0.00 3.18
2361 2511 9.618410 CTCGTAAAATAAAAGCAAAACAAGTTG 57.382 29.630 0.00 0.00 0.00 3.16
2362 2512 9.575783 TCTCGTAAAATAAAAGCAAAACAAGTT 57.424 25.926 0.00 0.00 0.00 2.66
2363 2513 9.575783 TTCTCGTAAAATAAAAGCAAAACAAGT 57.424 25.926 0.00 0.00 0.00 3.16
2366 2516 8.484008 GCATTCTCGTAAAATAAAAGCAAAACA 58.516 29.630 0.00 0.00 0.00 2.83
2367 2517 8.699749 AGCATTCTCGTAAAATAAAAGCAAAAC 58.300 29.630 0.00 0.00 0.00 2.43
2368 2518 8.810652 AGCATTCTCGTAAAATAAAAGCAAAA 57.189 26.923 0.00 0.00 0.00 2.44
2377 2527 8.342634 GCAGGAAAATAGCATTCTCGTAAAATA 58.657 33.333 0.00 0.00 0.00 1.40
2378 2528 7.196331 GCAGGAAAATAGCATTCTCGTAAAAT 58.804 34.615 0.00 0.00 0.00 1.82
2379 2529 6.404293 GGCAGGAAAATAGCATTCTCGTAAAA 60.404 38.462 0.00 0.00 0.00 1.52
2380 2530 5.065988 GGCAGGAAAATAGCATTCTCGTAAA 59.934 40.000 0.00 0.00 0.00 2.01
2381 2531 4.574828 GGCAGGAAAATAGCATTCTCGTAA 59.425 41.667 0.00 0.00 0.00 3.18
2382 2532 4.127171 GGCAGGAAAATAGCATTCTCGTA 58.873 43.478 0.00 0.00 0.00 3.43
2383 2533 2.945668 GGCAGGAAAATAGCATTCTCGT 59.054 45.455 0.00 0.00 0.00 4.18
2384 2534 2.032549 CGGCAGGAAAATAGCATTCTCG 60.033 50.000 0.00 0.00 0.00 4.04
2385 2535 3.002759 GTCGGCAGGAAAATAGCATTCTC 59.997 47.826 0.00 0.00 0.00 2.87
2407 2557 1.026182 TGCCTGTCGCTAATTGCCAG 61.026 55.000 0.00 0.00 38.78 4.85
2413 2563 0.524816 CGTACGTGCCTGTCGCTAAT 60.525 55.000 7.22 0.00 38.78 1.73
2455 2612 1.730064 TGAACAAGCGGTTTATCGAGC 59.270 47.619 0.00 0.00 40.63 5.03
2518 2675 1.553704 GTGGGTTCGACTCCTATTGGT 59.446 52.381 5.91 0.00 34.23 3.67
2539 2696 2.043526 AGAGGGCTTCATCCAATTGGTT 59.956 45.455 23.76 13.38 36.34 3.67
2543 2700 1.006281 TGCAGAGGGCTTCATCCAATT 59.994 47.619 0.00 0.00 45.15 2.32
2549 2706 0.111061 TTGTGTGCAGAGGGCTTCAT 59.889 50.000 0.00 0.00 45.15 2.57
2558 2715 1.821759 CCGGTTGGTTGTGTGCAGA 60.822 57.895 0.00 0.00 0.00 4.26
2563 2720 8.229461 ACATTTATATGTACCGGTTGGTTGTGT 61.229 37.037 15.04 4.87 43.12 3.72
2565 2722 6.181908 ACATTTATATGTACCGGTTGGTTGT 58.818 36.000 15.04 2.06 43.12 3.32
2574 2731 8.889717 AGGAAAACAGAACATTTATATGTACCG 58.110 33.333 0.00 0.00 44.14 4.02
2586 2743 9.841295 TGTTAAACTAGTAGGAAAACAGAACAT 57.159 29.630 0.00 0.00 0.00 2.71
2638 2920 4.035091 GGCAATGTTGTTTTTCTTTCCCAC 59.965 41.667 0.00 0.00 0.00 4.61
2705 2987 9.000486 AGAGATAAATACAACATGATGCATCAG 58.000 33.333 31.36 24.26 40.64 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.