Multiple sequence alignment - TraesCS3A01G492600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G492600 chr3A 100.000 2456 0 0 1 2456 719361792 719359337 0.000000e+00 4536.0
1 TraesCS3A01G492600 chr3A 87.836 781 53 26 989 1762 719354081 719353336 0.000000e+00 878.0
2 TraesCS3A01G492600 chr3A 88.141 683 72 6 1780 2456 719353085 719352406 0.000000e+00 804.0
3 TraesCS3A01G492600 chr3A 83.165 891 92 41 690 1548 719337631 719336767 0.000000e+00 761.0
4 TraesCS3A01G492600 chr3A 89.184 564 40 14 989 1547 719350076 719349529 0.000000e+00 684.0
5 TraesCS3A01G492600 chr3A 82.353 408 31 11 512 900 719354533 719354148 1.420000e-82 316.0
6 TraesCS3A01G492600 chr3A 97.222 36 1 0 896 931 719354134 719354099 7.330000e-06 62.1
7 TraesCS3A01G492600 chr3D 87.521 1218 63 26 589 1762 589573290 589572118 0.000000e+00 1325.0
8 TraesCS3A01G492600 chr3D 84.126 1367 144 41 434 1764 589418304 589416975 0.000000e+00 1254.0
9 TraesCS3A01G492600 chr3D 82.450 1094 127 41 486 1541 589506500 589505434 0.000000e+00 896.0
10 TraesCS3A01G492600 chr3D 84.383 794 93 15 1605 2391 589504622 589505391 0.000000e+00 750.0
11 TraesCS3A01G492600 chr3D 84.898 735 75 22 764 1486 589433006 589432296 0.000000e+00 710.0
12 TraesCS3A01G492600 chr3D 87.392 579 49 13 989 1553 589426578 589426010 0.000000e+00 643.0
13 TraesCS3A01G492600 chr3D 85.577 416 39 12 1760 2174 589571882 589571487 1.360000e-112 416.0
14 TraesCS3A01G492600 chr3D 91.736 242 17 3 2170 2410 589569606 589569367 1.410000e-87 333.0
15 TraesCS3A01G492600 chr3D 84.911 338 39 9 539 876 589493596 589493271 5.060000e-87 331.0
16 TraesCS3A01G492600 chr3D 83.562 219 20 4 546 757 589437183 589436974 8.960000e-45 191.0
17 TraesCS3A01G492600 chr3D 80.488 246 35 9 1520 1764 589432291 589432058 2.510000e-40 176.0
18 TraesCS3A01G492600 chr3D 86.207 116 12 2 762 876 589426781 589426669 3.320000e-24 122.0
19 TraesCS3A01G492600 chr3B 84.307 1421 143 40 368 1764 787471948 787473312 0.000000e+00 1315.0
20 TraesCS3A01G492600 chr3B 84.952 1256 120 27 561 1764 788074041 788072803 0.000000e+00 1208.0
21 TraesCS3A01G492600 chr3B 82.958 1156 127 40 638 1762 787989868 787990984 0.000000e+00 979.0
22 TraesCS3A01G492600 chr3B 90.015 651 61 4 1808 2456 788057623 788056975 0.000000e+00 839.0
23 TraesCS3A01G492600 chr3B 88.202 712 70 10 1757 2456 787992032 787992741 0.000000e+00 837.0
24 TraesCS3A01G492600 chr3B 81.136 493 70 15 1274 1763 788055432 788054960 8.290000e-100 374.0
25 TraesCS3A01G492600 chr3B 79.121 182 33 4 152 331 648899519 648899697 1.190000e-23 121.0
26 TraesCS3A01G492600 chr3B 97.222 36 1 0 896 931 788058652 788058617 7.330000e-06 62.1
27 TraesCS3A01G492600 chr5B 80.423 189 37 0 150 338 139352150 139352338 7.080000e-31 145.0
28 TraesCS3A01G492600 chr7D 76.895 277 48 11 74 339 549136805 549136534 2.550000e-30 143.0
29 TraesCS3A01G492600 chr7D 74.667 300 63 7 79 367 141489486 141489189 1.190000e-23 121.0
30 TraesCS3A01G492600 chr7D 76.364 220 46 6 146 361 80326760 80326977 2.000000e-21 113.0
31 TraesCS3A01G492600 chr7D 89.362 47 5 0 97 143 530755783 530755829 2.640000e-05 60.2
32 TraesCS3A01G492600 chr2D 75.896 307 58 12 74 366 615577807 615577503 2.550000e-30 143.0
33 TraesCS3A01G492600 chr2D 79.602 201 36 5 152 349 100958169 100957971 3.290000e-29 139.0
34 TraesCS3A01G492600 chr4D 76.147 218 50 2 146 361 499253881 499254098 2.000000e-21 113.0
35 TraesCS3A01G492600 chr2A 76.636 214 44 6 152 361 105681648 105681437 2.000000e-21 113.0
36 TraesCS3A01G492600 chr1B 88.889 54 6 0 74 127 173304615 173304668 1.580000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G492600 chr3A 719359337 719361792 2455 True 4536.000000 4536 100.000000 1 2456 1 chr3A.!!$R2 2455
1 TraesCS3A01G492600 chr3A 719336767 719337631 864 True 761.000000 761 83.165000 690 1548 1 chr3A.!!$R1 858
2 TraesCS3A01G492600 chr3A 719349529 719354533 5004 True 548.820000 878 88.947200 512 2456 5 chr3A.!!$R3 1944
3 TraesCS3A01G492600 chr3D 589416975 589418304 1329 True 1254.000000 1254 84.126000 434 1764 1 chr3D.!!$R1 1330
4 TraesCS3A01G492600 chr3D 589505434 589506500 1066 True 896.000000 896 82.450000 486 1541 1 chr3D.!!$R3 1055
5 TraesCS3A01G492600 chr3D 589504622 589505391 769 False 750.000000 750 84.383000 1605 2391 1 chr3D.!!$F1 786
6 TraesCS3A01G492600 chr3D 589569367 589573290 3923 True 691.333333 1325 88.278000 589 2410 3 chr3D.!!$R6 1821
7 TraesCS3A01G492600 chr3D 589426010 589426781 771 True 382.500000 643 86.799500 762 1553 2 chr3D.!!$R4 791
8 TraesCS3A01G492600 chr3D 589432058 589437183 5125 True 359.000000 710 82.982667 546 1764 3 chr3D.!!$R5 1218
9 TraesCS3A01G492600 chr3B 787471948 787473312 1364 False 1315.000000 1315 84.307000 368 1764 1 chr3B.!!$F2 1396
10 TraesCS3A01G492600 chr3B 788072803 788074041 1238 True 1208.000000 1208 84.952000 561 1764 1 chr3B.!!$R1 1203
11 TraesCS3A01G492600 chr3B 787989868 787992741 2873 False 908.000000 979 85.580000 638 2456 2 chr3B.!!$F3 1818
12 TraesCS3A01G492600 chr3B 788054960 788058652 3692 True 425.033333 839 89.457667 896 2456 3 chr3B.!!$R2 1560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.030908 CGACTCCTACAAGATCCGCC 59.969 60.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 9333 0.251608 CCCAACCGAAACCCCTCAAT 60.252 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.668632 GTCGTTGCCCCTCCATCA 59.331 61.111 0.00 0.00 0.00 3.07
18 19 1.745489 GTCGTTGCCCCTCCATCAC 60.745 63.158 0.00 0.00 0.00 3.06
19 20 2.438434 CGTTGCCCCTCCATCACC 60.438 66.667 0.00 0.00 0.00 4.02
20 21 2.438434 GTTGCCCCTCCATCACCG 60.438 66.667 0.00 0.00 0.00 4.94
21 22 3.727258 TTGCCCCTCCATCACCGG 61.727 66.667 0.00 0.00 0.00 5.28
22 23 4.731853 TGCCCCTCCATCACCGGA 62.732 66.667 9.46 0.00 0.00 5.14
28 29 1.819229 CTCCATCACCGGAGTCTGG 59.181 63.158 17.01 17.01 46.48 3.86
29 30 2.187946 CCATCACCGGAGTCTGGC 59.812 66.667 18.54 0.00 0.00 4.85
30 31 2.659063 CCATCACCGGAGTCTGGCA 61.659 63.158 18.54 5.26 0.00 4.92
31 32 1.296392 CATCACCGGAGTCTGGCAA 59.704 57.895 18.54 6.64 0.00 4.52
32 33 0.321564 CATCACCGGAGTCTGGCAAA 60.322 55.000 18.54 3.96 0.00 3.68
33 34 0.321653 ATCACCGGAGTCTGGCAAAC 60.322 55.000 18.54 0.00 0.00 2.93
34 35 1.966451 CACCGGAGTCTGGCAAACC 60.966 63.158 18.54 0.00 0.00 3.27
35 36 2.147387 ACCGGAGTCTGGCAAACCT 61.147 57.895 18.54 0.00 36.63 3.50
36 37 1.073199 CCGGAGTCTGGCAAACCTT 59.927 57.895 4.68 0.00 36.63 3.50
37 38 0.537371 CCGGAGTCTGGCAAACCTTT 60.537 55.000 4.68 0.00 36.63 3.11
38 39 1.318576 CGGAGTCTGGCAAACCTTTT 58.681 50.000 0.00 0.00 36.63 2.27
39 40 1.681264 CGGAGTCTGGCAAACCTTTTT 59.319 47.619 0.00 0.00 36.63 1.94
40 41 2.543653 CGGAGTCTGGCAAACCTTTTTG 60.544 50.000 0.00 0.00 44.42 2.44
41 42 2.430694 GGAGTCTGGCAAACCTTTTTGT 59.569 45.455 0.00 0.00 43.62 2.83
42 43 3.634910 GGAGTCTGGCAAACCTTTTTGTA 59.365 43.478 0.00 0.00 43.62 2.41
43 44 4.261614 GGAGTCTGGCAAACCTTTTTGTAG 60.262 45.833 0.00 0.00 43.62 2.74
44 45 4.278310 AGTCTGGCAAACCTTTTTGTAGT 58.722 39.130 0.00 0.00 43.62 2.73
45 46 5.442391 AGTCTGGCAAACCTTTTTGTAGTA 58.558 37.500 0.00 0.00 43.62 1.82
46 47 5.298527 AGTCTGGCAAACCTTTTTGTAGTAC 59.701 40.000 0.00 0.00 43.62 2.73
47 48 5.066764 GTCTGGCAAACCTTTTTGTAGTACA 59.933 40.000 0.00 0.00 43.62 2.90
48 49 5.652891 TCTGGCAAACCTTTTTGTAGTACAA 59.347 36.000 11.75 11.75 43.62 2.41
49 50 6.153000 TCTGGCAAACCTTTTTGTAGTACAAA 59.847 34.615 21.79 21.79 43.62 2.83
50 51 6.334202 TGGCAAACCTTTTTGTAGTACAAAG 58.666 36.000 23.70 16.76 41.99 2.77
51 52 6.071278 TGGCAAACCTTTTTGTAGTACAAAGT 60.071 34.615 23.70 17.30 41.99 2.66
52 53 7.842133 TGGCAAACCTTTTTGTAGTACAAAGTC 60.842 37.037 23.70 14.73 41.99 3.01
62 63 7.599630 TTGTAGTACAAAGTCAAAAAGTCGT 57.400 32.000 13.36 0.00 34.76 4.34
63 64 7.225523 TGTAGTACAAAGTCAAAAAGTCGTC 57.774 36.000 0.00 0.00 0.00 4.20
64 65 5.385396 AGTACAAAGTCAAAAAGTCGTCG 57.615 39.130 0.00 0.00 0.00 5.12
65 66 4.866486 AGTACAAAGTCAAAAAGTCGTCGT 59.134 37.500 0.00 0.00 0.00 4.34
66 67 3.998522 ACAAAGTCAAAAAGTCGTCGTG 58.001 40.909 0.00 0.00 0.00 4.35
67 68 3.680937 ACAAAGTCAAAAAGTCGTCGTGA 59.319 39.130 0.00 0.00 0.00 4.35
68 69 4.331717 ACAAAGTCAAAAAGTCGTCGTGAT 59.668 37.500 0.00 0.00 0.00 3.06
69 70 5.521010 ACAAAGTCAAAAAGTCGTCGTGATA 59.479 36.000 0.00 0.00 0.00 2.15
70 71 6.036300 ACAAAGTCAAAAAGTCGTCGTGATAA 59.964 34.615 0.00 0.00 0.00 1.75
71 72 5.824243 AGTCAAAAAGTCGTCGTGATAAG 57.176 39.130 0.00 0.00 0.00 1.73
72 73 4.684703 AGTCAAAAAGTCGTCGTGATAAGG 59.315 41.667 0.00 0.00 0.00 2.69
73 74 3.430895 TCAAAAAGTCGTCGTGATAAGGC 59.569 43.478 0.00 0.00 0.00 4.35
74 75 2.005971 AAAGTCGTCGTGATAAGGCC 57.994 50.000 0.00 0.00 0.00 5.19
75 76 0.892755 AAGTCGTCGTGATAAGGCCA 59.107 50.000 5.01 0.00 0.00 5.36
76 77 1.112113 AGTCGTCGTGATAAGGCCAT 58.888 50.000 5.01 0.00 0.00 4.40
77 78 2.304092 AGTCGTCGTGATAAGGCCATA 58.696 47.619 5.01 0.00 0.00 2.74
78 79 2.691526 AGTCGTCGTGATAAGGCCATAA 59.308 45.455 5.01 0.00 0.00 1.90
79 80 2.793232 GTCGTCGTGATAAGGCCATAAC 59.207 50.000 5.01 0.00 0.00 1.89
80 81 2.427812 TCGTCGTGATAAGGCCATAACA 59.572 45.455 5.01 0.00 0.00 2.41
81 82 3.119065 TCGTCGTGATAAGGCCATAACAA 60.119 43.478 5.01 0.00 0.00 2.83
82 83 3.000925 CGTCGTGATAAGGCCATAACAAC 59.999 47.826 5.01 0.00 0.00 3.32
83 84 3.936453 GTCGTGATAAGGCCATAACAACA 59.064 43.478 5.01 0.00 0.00 3.33
84 85 4.393680 GTCGTGATAAGGCCATAACAACAA 59.606 41.667 5.01 0.00 0.00 2.83
85 86 4.393680 TCGTGATAAGGCCATAACAACAAC 59.606 41.667 5.01 0.00 0.00 3.32
86 87 4.394920 CGTGATAAGGCCATAACAACAACT 59.605 41.667 5.01 0.00 0.00 3.16
87 88 5.640732 GTGATAAGGCCATAACAACAACTG 58.359 41.667 5.01 0.00 0.00 3.16
88 89 4.157656 TGATAAGGCCATAACAACAACTGC 59.842 41.667 5.01 0.00 0.00 4.40
89 90 2.292828 AGGCCATAACAACAACTGCT 57.707 45.000 5.01 0.00 0.00 4.24
90 91 1.888512 AGGCCATAACAACAACTGCTG 59.111 47.619 5.01 0.00 0.00 4.41
91 92 1.669795 GGCCATAACAACAACTGCTGC 60.670 52.381 0.00 0.00 0.00 5.25
92 93 1.270550 GCCATAACAACAACTGCTGCT 59.729 47.619 0.00 0.00 0.00 4.24
93 94 2.923605 GCCATAACAACAACTGCTGCTG 60.924 50.000 4.89 4.89 0.00 4.41
94 95 2.553602 CCATAACAACAACTGCTGCTGA 59.446 45.455 13.69 0.00 0.00 4.26
95 96 3.558505 CATAACAACAACTGCTGCTGAC 58.441 45.455 13.69 0.00 0.00 3.51
96 97 0.378257 AACAACAACTGCTGCTGACG 59.622 50.000 13.69 6.04 0.00 4.35
97 98 0.461870 ACAACAACTGCTGCTGACGA 60.462 50.000 13.69 0.00 0.00 4.20
98 99 0.657312 CAACAACTGCTGCTGACGAA 59.343 50.000 13.69 0.00 0.00 3.85
99 100 0.940126 AACAACTGCTGCTGACGAAG 59.060 50.000 13.69 0.00 0.00 3.79
100 101 0.104855 ACAACTGCTGCTGACGAAGA 59.895 50.000 13.69 0.00 0.00 2.87
101 102 0.788995 CAACTGCTGCTGACGAAGAG 59.211 55.000 13.69 0.00 0.00 2.85
102 103 0.676184 AACTGCTGCTGACGAAGAGA 59.324 50.000 13.69 0.00 0.00 3.10
103 104 0.676184 ACTGCTGCTGACGAAGAGAA 59.324 50.000 13.69 0.00 0.00 2.87
104 105 1.336702 ACTGCTGCTGACGAAGAGAAG 60.337 52.381 13.69 0.00 0.00 2.85
105 106 0.676184 TGCTGCTGACGAAGAGAAGT 59.324 50.000 0.00 0.00 0.00 3.01
106 107 1.069204 TGCTGCTGACGAAGAGAAGTT 59.931 47.619 0.00 0.00 0.00 2.66
107 108 2.139118 GCTGCTGACGAAGAGAAGTTT 58.861 47.619 0.00 0.00 0.00 2.66
108 109 3.243737 TGCTGCTGACGAAGAGAAGTTTA 60.244 43.478 0.00 0.00 0.00 2.01
109 110 3.366422 GCTGCTGACGAAGAGAAGTTTAG 59.634 47.826 0.00 0.00 0.00 1.85
110 111 4.799678 CTGCTGACGAAGAGAAGTTTAGA 58.200 43.478 0.00 0.00 0.00 2.10
111 112 5.392767 TGCTGACGAAGAGAAGTTTAGAT 57.607 39.130 0.00 0.00 0.00 1.98
112 113 5.403246 TGCTGACGAAGAGAAGTTTAGATC 58.597 41.667 0.00 0.00 0.00 2.75
113 114 5.048013 TGCTGACGAAGAGAAGTTTAGATCA 60.048 40.000 0.00 0.00 0.00 2.92
114 115 5.864474 GCTGACGAAGAGAAGTTTAGATCAA 59.136 40.000 0.00 0.00 0.00 2.57
115 116 6.366332 GCTGACGAAGAGAAGTTTAGATCAAA 59.634 38.462 0.00 0.00 0.00 2.69
116 117 7.095607 GCTGACGAAGAGAAGTTTAGATCAAAA 60.096 37.037 0.00 0.00 0.00 2.44
117 118 8.299262 TGACGAAGAGAAGTTTAGATCAAAAG 57.701 34.615 0.00 0.00 0.00 2.27
118 119 7.385205 TGACGAAGAGAAGTTTAGATCAAAAGG 59.615 37.037 0.00 0.00 0.00 3.11
119 120 7.442656 ACGAAGAGAAGTTTAGATCAAAAGGA 58.557 34.615 0.00 0.00 0.00 3.36
120 121 8.097662 ACGAAGAGAAGTTTAGATCAAAAGGAT 58.902 33.333 0.00 0.00 39.53 3.24
133 134 7.497925 GATCAAAAGGATCCAACCAGTATAC 57.502 40.000 15.82 0.00 45.58 1.47
134 135 6.381498 TCAAAAGGATCCAACCAGTATACA 57.619 37.500 15.82 0.00 0.00 2.29
135 136 6.177610 TCAAAAGGATCCAACCAGTATACAC 58.822 40.000 15.82 0.00 0.00 2.90
136 137 5.772393 AAAGGATCCAACCAGTATACACA 57.228 39.130 15.82 0.00 0.00 3.72
137 138 4.755266 AGGATCCAACCAGTATACACAC 57.245 45.455 15.82 0.00 0.00 3.82
138 139 3.132289 AGGATCCAACCAGTATACACACG 59.868 47.826 15.82 0.00 0.00 4.49
139 140 3.131577 GGATCCAACCAGTATACACACGA 59.868 47.826 6.95 0.00 0.00 4.35
140 141 4.382254 GGATCCAACCAGTATACACACGAA 60.382 45.833 6.95 0.00 0.00 3.85
141 142 3.916761 TCCAACCAGTATACACACGAAC 58.083 45.455 5.50 0.00 0.00 3.95
142 143 3.321396 TCCAACCAGTATACACACGAACA 59.679 43.478 5.50 0.00 0.00 3.18
143 144 4.020928 TCCAACCAGTATACACACGAACAT 60.021 41.667 5.50 0.00 0.00 2.71
144 145 5.185442 TCCAACCAGTATACACACGAACATA 59.815 40.000 5.50 0.00 0.00 2.29
145 146 5.518847 CCAACCAGTATACACACGAACATAG 59.481 44.000 5.50 0.00 0.00 2.23
146 147 6.327154 CAACCAGTATACACACGAACATAGA 58.673 40.000 5.50 0.00 0.00 1.98
147 148 5.888105 ACCAGTATACACACGAACATAGAC 58.112 41.667 5.50 0.00 0.00 2.59
148 149 5.163581 ACCAGTATACACACGAACATAGACC 60.164 44.000 5.50 0.00 0.00 3.85
149 150 4.968181 CAGTATACACACGAACATAGACCG 59.032 45.833 5.50 0.00 0.00 4.79
150 151 4.877823 AGTATACACACGAACATAGACCGA 59.122 41.667 5.50 0.00 0.00 4.69
151 152 4.707030 ATACACACGAACATAGACCGAA 57.293 40.909 0.00 0.00 0.00 4.30
152 153 3.587797 ACACACGAACATAGACCGAAT 57.412 42.857 0.00 0.00 0.00 3.34
153 154 3.508762 ACACACGAACATAGACCGAATC 58.491 45.455 0.00 0.00 0.00 2.52
154 155 2.858344 CACACGAACATAGACCGAATCC 59.142 50.000 0.00 0.00 0.00 3.01
155 156 2.494471 ACACGAACATAGACCGAATCCA 59.506 45.455 0.00 0.00 0.00 3.41
156 157 2.858344 CACGAACATAGACCGAATCCAC 59.142 50.000 0.00 0.00 0.00 4.02
157 158 2.159142 ACGAACATAGACCGAATCCACC 60.159 50.000 0.00 0.00 0.00 4.61
158 159 2.470821 GAACATAGACCGAATCCACCG 58.529 52.381 0.00 0.00 0.00 4.94
159 160 1.771565 ACATAGACCGAATCCACCGA 58.228 50.000 0.00 0.00 0.00 4.69
160 161 2.104967 ACATAGACCGAATCCACCGAA 58.895 47.619 0.00 0.00 0.00 4.30
161 162 2.100916 ACATAGACCGAATCCACCGAAG 59.899 50.000 0.00 0.00 0.00 3.79
162 163 2.133281 TAGACCGAATCCACCGAAGA 57.867 50.000 0.00 0.00 0.00 2.87
163 164 0.531200 AGACCGAATCCACCGAAGAC 59.469 55.000 0.00 0.00 0.00 3.01
164 165 0.245539 GACCGAATCCACCGAAGACA 59.754 55.000 0.00 0.00 0.00 3.41
165 166 0.682852 ACCGAATCCACCGAAGACAA 59.317 50.000 0.00 0.00 0.00 3.18
166 167 1.337823 ACCGAATCCACCGAAGACAAG 60.338 52.381 0.00 0.00 0.00 3.16
167 168 0.721718 CGAATCCACCGAAGACAAGC 59.278 55.000 0.00 0.00 0.00 4.01
168 169 1.808411 GAATCCACCGAAGACAAGCA 58.192 50.000 0.00 0.00 0.00 3.91
169 170 2.359900 GAATCCACCGAAGACAAGCAT 58.640 47.619 0.00 0.00 0.00 3.79
170 171 2.029838 ATCCACCGAAGACAAGCATC 57.970 50.000 0.00 0.00 0.00 3.91
171 172 0.684535 TCCACCGAAGACAAGCATCA 59.315 50.000 0.00 0.00 0.00 3.07
172 173 1.071542 TCCACCGAAGACAAGCATCAA 59.928 47.619 0.00 0.00 0.00 2.57
173 174 2.086869 CCACCGAAGACAAGCATCAAT 58.913 47.619 0.00 0.00 0.00 2.57
174 175 2.096496 CCACCGAAGACAAGCATCAATC 59.904 50.000 0.00 0.00 0.00 2.67
175 176 2.002586 ACCGAAGACAAGCATCAATCG 58.997 47.619 0.00 0.00 32.89 3.34
176 177 2.270923 CCGAAGACAAGCATCAATCGA 58.729 47.619 0.00 0.00 34.16 3.59
177 178 2.029728 CCGAAGACAAGCATCAATCGAC 59.970 50.000 0.00 0.00 34.16 4.20
178 179 2.926200 CGAAGACAAGCATCAATCGACT 59.074 45.455 0.00 0.00 34.16 4.18
179 180 3.000277 CGAAGACAAGCATCAATCGACTC 60.000 47.826 0.00 0.00 34.16 3.36
180 181 2.898705 AGACAAGCATCAATCGACTCC 58.101 47.619 0.00 0.00 0.00 3.85
181 182 2.499289 AGACAAGCATCAATCGACTCCT 59.501 45.455 0.00 0.00 0.00 3.69
182 183 3.701542 AGACAAGCATCAATCGACTCCTA 59.298 43.478 0.00 0.00 0.00 2.94
183 184 3.786635 ACAAGCATCAATCGACTCCTAC 58.213 45.455 0.00 0.00 0.00 3.18
184 185 3.195610 ACAAGCATCAATCGACTCCTACA 59.804 43.478 0.00 0.00 0.00 2.74
185 186 4.183865 CAAGCATCAATCGACTCCTACAA 58.816 43.478 0.00 0.00 0.00 2.41
186 187 4.052159 AGCATCAATCGACTCCTACAAG 57.948 45.455 0.00 0.00 0.00 3.16
187 188 3.701542 AGCATCAATCGACTCCTACAAGA 59.298 43.478 0.00 0.00 0.00 3.02
188 189 4.343526 AGCATCAATCGACTCCTACAAGAT 59.656 41.667 0.00 0.00 0.00 2.40
189 190 4.683781 GCATCAATCGACTCCTACAAGATC 59.316 45.833 0.00 0.00 0.00 2.75
190 191 4.920640 TCAATCGACTCCTACAAGATCC 57.079 45.455 0.00 0.00 0.00 3.36
191 192 3.315470 TCAATCGACTCCTACAAGATCCG 59.685 47.826 0.00 0.00 0.00 4.18
192 193 1.022735 TCGACTCCTACAAGATCCGC 58.977 55.000 0.00 0.00 0.00 5.54
193 194 0.030908 CGACTCCTACAAGATCCGCC 59.969 60.000 0.00 0.00 0.00 6.13
194 195 0.030908 GACTCCTACAAGATCCGCCG 59.969 60.000 0.00 0.00 0.00 6.46
195 196 1.364171 CTCCTACAAGATCCGCCGG 59.636 63.158 0.00 0.00 0.00 6.13
196 197 1.076559 TCCTACAAGATCCGCCGGA 60.077 57.895 8.97 8.97 35.55 5.14
197 198 1.107538 TCCTACAAGATCCGCCGGAG 61.108 60.000 13.12 0.00 34.05 4.63
198 199 1.107538 CCTACAAGATCCGCCGGAGA 61.108 60.000 13.12 0.00 34.05 3.71
199 200 0.030908 CTACAAGATCCGCCGGAGAC 59.969 60.000 13.12 8.53 34.05 3.36
200 201 0.681887 TACAAGATCCGCCGGAGACA 60.682 55.000 13.12 0.00 34.05 3.41
201 202 1.227089 CAAGATCCGCCGGAGACAG 60.227 63.158 13.12 0.00 34.05 3.51
202 203 1.379977 AAGATCCGCCGGAGACAGA 60.380 57.895 13.12 0.00 34.05 3.41
203 204 1.668101 AAGATCCGCCGGAGACAGAC 61.668 60.000 13.12 0.00 34.05 3.51
204 205 3.140225 GATCCGCCGGAGACAGACC 62.140 68.421 13.12 0.00 34.05 3.85
205 206 3.663815 ATCCGCCGGAGACAGACCT 62.664 63.158 13.12 0.00 34.05 3.85
206 207 3.827898 CCGCCGGAGACAGACCTC 61.828 72.222 5.05 0.00 0.00 3.85
213 214 1.080434 GAGACAGACCTCCACACGC 60.080 63.158 0.00 0.00 0.00 5.34
214 215 2.048127 GACAGACCTCCACACGCC 60.048 66.667 0.00 0.00 0.00 5.68
215 216 3.591254 GACAGACCTCCACACGCCC 62.591 68.421 0.00 0.00 0.00 6.13
216 217 3.314331 CAGACCTCCACACGCCCT 61.314 66.667 0.00 0.00 0.00 5.19
217 218 2.997897 AGACCTCCACACGCCCTC 60.998 66.667 0.00 0.00 0.00 4.30
218 219 4.083862 GACCTCCACACGCCCTCC 62.084 72.222 0.00 0.00 0.00 4.30
221 222 4.436998 CTCCACACGCCCTCCGAC 62.437 72.222 0.00 0.00 41.02 4.79
224 225 4.129737 CACACGCCCTCCGACGAT 62.130 66.667 0.00 0.00 41.02 3.73
225 226 4.129737 ACACGCCCTCCGACGATG 62.130 66.667 0.00 0.00 41.02 3.84
228 229 3.592814 CGCCCTCCGACGATGCTA 61.593 66.667 0.00 0.00 40.02 3.49
229 230 2.336809 GCCCTCCGACGATGCTAG 59.663 66.667 0.00 0.00 0.00 3.42
230 231 2.194212 GCCCTCCGACGATGCTAGA 61.194 63.158 0.00 0.00 0.00 2.43
231 232 1.735376 GCCCTCCGACGATGCTAGAA 61.735 60.000 0.00 0.00 0.00 2.10
232 233 0.744874 CCCTCCGACGATGCTAGAAA 59.255 55.000 0.00 0.00 0.00 2.52
233 234 1.536284 CCCTCCGACGATGCTAGAAAC 60.536 57.143 0.00 0.00 0.00 2.78
234 235 1.134367 CCTCCGACGATGCTAGAAACA 59.866 52.381 0.00 0.00 0.00 2.83
235 236 2.223829 CCTCCGACGATGCTAGAAACAT 60.224 50.000 0.00 0.00 0.00 2.71
236 237 3.046390 CTCCGACGATGCTAGAAACATC 58.954 50.000 0.00 0.00 40.45 3.06
237 238 2.688446 TCCGACGATGCTAGAAACATCT 59.312 45.455 0.00 0.00 41.45 2.90
238 239 3.046390 CCGACGATGCTAGAAACATCTC 58.954 50.000 0.00 0.00 41.45 2.75
239 240 3.046390 CGACGATGCTAGAAACATCTCC 58.954 50.000 0.00 0.00 41.45 3.71
240 241 3.046390 GACGATGCTAGAAACATCTCCG 58.954 50.000 0.00 0.00 41.45 4.63
241 242 2.688446 ACGATGCTAGAAACATCTCCGA 59.312 45.455 0.00 0.00 41.45 4.55
242 243 3.243234 ACGATGCTAGAAACATCTCCGAG 60.243 47.826 0.00 0.00 41.45 4.63
243 244 3.003793 CGATGCTAGAAACATCTCCGAGA 59.996 47.826 0.00 0.00 41.45 4.04
244 245 4.320861 CGATGCTAGAAACATCTCCGAGAT 60.321 45.833 4.96 4.96 41.45 2.75
254 255 2.652313 CTCCGAGATGGGAGCTAGG 58.348 63.158 0.00 0.00 46.53 3.02
255 256 1.531739 CTCCGAGATGGGAGCTAGGC 61.532 65.000 0.00 0.00 46.53 3.93
256 257 2.647875 CGAGATGGGAGCTAGGCG 59.352 66.667 0.00 0.00 0.00 5.52
257 258 2.925262 CGAGATGGGAGCTAGGCGG 61.925 68.421 0.00 0.00 0.00 6.13
258 259 1.531840 GAGATGGGAGCTAGGCGGA 60.532 63.158 0.00 0.00 0.00 5.54
259 260 1.075226 AGATGGGAGCTAGGCGGAA 60.075 57.895 0.00 0.00 0.00 4.30
260 261 0.691078 AGATGGGAGCTAGGCGGAAA 60.691 55.000 0.00 0.00 0.00 3.13
261 262 0.250081 GATGGGAGCTAGGCGGAAAG 60.250 60.000 0.00 0.00 0.00 2.62
262 263 0.691078 ATGGGAGCTAGGCGGAAAGA 60.691 55.000 0.00 0.00 0.00 2.52
263 264 0.907704 TGGGAGCTAGGCGGAAAGAA 60.908 55.000 0.00 0.00 0.00 2.52
264 265 0.470341 GGGAGCTAGGCGGAAAGAAT 59.530 55.000 0.00 0.00 0.00 2.40
265 266 1.541452 GGGAGCTAGGCGGAAAGAATC 60.541 57.143 0.00 0.00 0.00 2.52
266 267 1.414550 GGAGCTAGGCGGAAAGAATCT 59.585 52.381 0.00 0.00 0.00 2.40
267 268 2.158885 GGAGCTAGGCGGAAAGAATCTT 60.159 50.000 0.00 0.00 0.00 2.40
268 269 3.069729 GGAGCTAGGCGGAAAGAATCTTA 59.930 47.826 0.00 0.00 0.00 2.10
269 270 4.262678 GGAGCTAGGCGGAAAGAATCTTAT 60.263 45.833 0.00 0.00 0.00 1.73
270 271 4.888917 AGCTAGGCGGAAAGAATCTTATC 58.111 43.478 0.00 0.00 0.00 1.75
271 272 3.997681 GCTAGGCGGAAAGAATCTTATCC 59.002 47.826 0.00 5.21 0.00 2.59
272 273 4.262678 GCTAGGCGGAAAGAATCTTATCCT 60.263 45.833 16.42 12.93 0.00 3.24
273 274 5.047235 GCTAGGCGGAAAGAATCTTATCCTA 60.047 44.000 16.42 13.24 0.00 2.94
274 275 6.351456 GCTAGGCGGAAAGAATCTTATCCTAT 60.351 42.308 16.42 8.76 0.00 2.57
275 276 6.441088 AGGCGGAAAGAATCTTATCCTATT 57.559 37.500 16.42 5.03 0.00 1.73
276 277 6.842676 AGGCGGAAAGAATCTTATCCTATTT 58.157 36.000 16.42 0.00 0.00 1.40
277 278 7.290813 AGGCGGAAAGAATCTTATCCTATTTT 58.709 34.615 16.42 0.00 0.00 1.82
278 279 7.445707 AGGCGGAAAGAATCTTATCCTATTTTC 59.554 37.037 16.42 1.50 0.00 2.29
279 280 7.228706 GGCGGAAAGAATCTTATCCTATTTTCA 59.771 37.037 16.42 0.00 0.00 2.69
280 281 8.621286 GCGGAAAGAATCTTATCCTATTTTCAA 58.379 33.333 16.42 0.00 0.00 2.69
288 289 9.692325 AATCTTATCCTATTTTCAAAGAGCTGT 57.308 29.630 0.00 0.00 0.00 4.40
289 290 8.723942 TCTTATCCTATTTTCAAAGAGCTGTC 57.276 34.615 0.00 0.00 0.00 3.51
290 291 8.321353 TCTTATCCTATTTTCAAAGAGCTGTCA 58.679 33.333 0.00 0.00 0.00 3.58
291 292 6.749923 ATCCTATTTTCAAAGAGCTGTCAC 57.250 37.500 0.00 0.00 0.00 3.67
292 293 5.003804 TCCTATTTTCAAAGAGCTGTCACC 58.996 41.667 0.00 0.00 0.00 4.02
293 294 3.904136 ATTTTCAAAGAGCTGTCACCG 57.096 42.857 0.00 0.00 0.00 4.94
294 295 0.944386 TTTCAAAGAGCTGTCACCGC 59.056 50.000 0.00 0.00 0.00 5.68
295 296 0.884704 TTCAAAGAGCTGTCACCGCC 60.885 55.000 0.00 0.00 0.00 6.13
296 297 1.302033 CAAAGAGCTGTCACCGCCT 60.302 57.895 0.00 0.00 0.00 5.52
297 298 1.004440 AAAGAGCTGTCACCGCCTC 60.004 57.895 0.00 0.00 0.00 4.70
298 299 1.758440 AAAGAGCTGTCACCGCCTCA 61.758 55.000 0.00 0.00 0.00 3.86
299 300 2.433318 GAGCTGTCACCGCCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
300 301 3.941657 GAGCTGTCACCGCCTCACC 62.942 68.421 0.00 0.00 0.00 4.02
301 302 4.008933 GCTGTCACCGCCTCACCT 62.009 66.667 0.00 0.00 0.00 4.00
302 303 2.743718 CTGTCACCGCCTCACCTT 59.256 61.111 0.00 0.00 0.00 3.50
303 304 1.972198 CTGTCACCGCCTCACCTTA 59.028 57.895 0.00 0.00 0.00 2.69
304 305 0.389948 CTGTCACCGCCTCACCTTAC 60.390 60.000 0.00 0.00 0.00 2.34
305 306 0.830444 TGTCACCGCCTCACCTTACT 60.830 55.000 0.00 0.00 0.00 2.24
306 307 0.389948 GTCACCGCCTCACCTTACTG 60.390 60.000 0.00 0.00 0.00 2.74
307 308 0.541063 TCACCGCCTCACCTTACTGA 60.541 55.000 0.00 0.00 0.00 3.41
308 309 0.320374 CACCGCCTCACCTTACTGAA 59.680 55.000 0.00 0.00 0.00 3.02
309 310 1.066143 CACCGCCTCACCTTACTGAAT 60.066 52.381 0.00 0.00 0.00 2.57
310 311 2.167693 CACCGCCTCACCTTACTGAATA 59.832 50.000 0.00 0.00 0.00 1.75
311 312 2.431057 ACCGCCTCACCTTACTGAATAG 59.569 50.000 0.00 0.00 0.00 1.73
312 313 2.224066 CCGCCTCACCTTACTGAATAGG 60.224 54.545 0.00 0.00 37.56 2.57
313 314 2.693591 CGCCTCACCTTACTGAATAGGA 59.306 50.000 0.00 0.00 35.45 2.94
314 315 3.491104 CGCCTCACCTTACTGAATAGGAC 60.491 52.174 0.00 0.00 35.45 3.85
315 316 3.451178 GCCTCACCTTACTGAATAGGACA 59.549 47.826 0.00 0.00 35.45 4.02
316 317 4.680975 GCCTCACCTTACTGAATAGGACAC 60.681 50.000 0.00 0.00 35.45 3.67
317 318 4.466370 CCTCACCTTACTGAATAGGACACA 59.534 45.833 0.00 0.00 35.45 3.72
318 319 5.046591 CCTCACCTTACTGAATAGGACACAA 60.047 44.000 0.00 0.00 35.45 3.33
319 320 6.428083 TCACCTTACTGAATAGGACACAAA 57.572 37.500 0.00 0.00 35.45 2.83
320 321 7.016153 TCACCTTACTGAATAGGACACAAAT 57.984 36.000 0.00 0.00 35.45 2.32
321 322 7.103641 TCACCTTACTGAATAGGACACAAATC 58.896 38.462 0.00 0.00 35.45 2.17
322 323 6.878923 CACCTTACTGAATAGGACACAAATCA 59.121 38.462 0.00 0.00 35.45 2.57
323 324 7.554118 CACCTTACTGAATAGGACACAAATCAT 59.446 37.037 0.00 0.00 35.45 2.45
324 325 8.768397 ACCTTACTGAATAGGACACAAATCATA 58.232 33.333 0.00 0.00 35.45 2.15
325 326 9.613428 CCTTACTGAATAGGACACAAATCATAA 57.387 33.333 0.00 0.00 33.13 1.90
329 330 9.739276 ACTGAATAGGACACAAATCATAAAGAA 57.261 29.630 0.00 0.00 0.00 2.52
334 335 9.739276 ATAGGACACAAATCATAAAGAAACTGA 57.261 29.630 0.00 0.00 0.00 3.41
335 336 8.463930 AGGACACAAATCATAAAGAAACTGAA 57.536 30.769 0.00 0.00 0.00 3.02
336 337 8.912988 AGGACACAAATCATAAAGAAACTGAAA 58.087 29.630 0.00 0.00 0.00 2.69
337 338 9.528018 GGACACAAATCATAAAGAAACTGAAAA 57.472 29.630 0.00 0.00 0.00 2.29
342 343 9.833894 CAAATCATAAAGAAACTGAAAAACACG 57.166 29.630 0.00 0.00 0.00 4.49
343 344 9.581099 AAATCATAAAGAAACTGAAAAACACGT 57.419 25.926 0.00 0.00 0.00 4.49
345 346 9.878599 ATCATAAAGAAACTGAAAAACACGTAG 57.121 29.630 0.00 0.00 0.00 3.51
346 347 9.100554 TCATAAAGAAACTGAAAAACACGTAGA 57.899 29.630 0.00 0.00 0.00 2.59
347 348 9.710979 CATAAAGAAACTGAAAAACACGTAGAA 57.289 29.630 0.00 0.00 0.00 2.10
349 350 8.443898 AAAGAAACTGAAAAACACGTAGAAAC 57.556 30.769 0.00 0.00 0.00 2.78
365 366 3.793060 ACGGAGTTCTCCCACTGG 58.207 61.111 12.54 1.97 37.78 4.00
366 367 2.266055 CGGAGTTCTCCCACTGGC 59.734 66.667 12.54 0.00 0.00 4.85
398 402 1.614903 TGAGCCTTGGTTTTGCATCAG 59.385 47.619 0.00 0.00 0.00 2.90
414 418 0.823356 TCAGCACTCCCAAGCAAACC 60.823 55.000 0.00 0.00 0.00 3.27
420 424 1.247567 CTCCCAAGCAAACCGTTGAT 58.752 50.000 0.00 0.00 36.83 2.57
431 435 4.320935 GCAAACCGTTGATGAATACCACTT 60.321 41.667 0.00 0.00 36.83 3.16
432 436 5.768317 CAAACCGTTGATGAATACCACTTT 58.232 37.500 0.00 0.00 36.83 2.66
458 462 1.372997 GACGACAGTGGCACGATGT 60.373 57.895 12.71 12.21 32.26 3.06
483 487 4.220724 ACATGGCATGAATAGCAAGGAAT 58.779 39.130 32.74 3.47 0.00 3.01
543 551 3.097728 GGACACACGCGTGACTCG 61.098 66.667 42.94 28.04 46.80 4.18
569 578 3.636231 CCCTGCCAAGTCGGACCA 61.636 66.667 4.14 0.00 36.56 4.02
570 579 2.429930 CCTGCCAAGTCGGACCAA 59.570 61.111 4.14 0.00 36.56 3.67
576 585 2.663852 AAGTCGGACCAAACGCGG 60.664 61.111 12.47 0.00 0.00 6.46
577 586 4.675029 AGTCGGACCAAACGCGGG 62.675 66.667 12.47 4.35 0.00 6.13
587 596 1.906333 AAACGCGGGGCCAAAATCT 60.906 52.632 12.47 0.00 0.00 2.40
614 623 1.345176 CGTCGCCGAAGCAGATTTC 59.655 57.895 0.00 0.00 39.83 2.17
627 636 2.045340 ATTTCCCCCGTGCCTTCG 60.045 61.111 0.00 0.00 0.00 3.79
645 654 1.023513 CGCCTGCTTTTCTCCTCCAG 61.024 60.000 0.00 0.00 0.00 3.86
694 717 2.357275 CGTACGCCCCCACGAAAA 60.357 61.111 0.52 0.00 40.56 2.29
807 4806 2.501610 GACCACCGCATCTCTCCC 59.498 66.667 0.00 0.00 0.00 4.30
842 4841 0.678048 GCCGTGAAGCTTCCAAGGAT 60.678 55.000 26.26 0.00 35.60 3.24
1057 5084 3.680786 CGTCGCTGGACCAGGACA 61.681 66.667 28.15 5.89 40.17 4.02
1475 8409 2.131294 CTACCTAGCTAGCGCGTGGG 62.131 65.000 15.74 6.18 42.32 4.61
1490 8444 0.254747 GTGGGCCCAAGCATACAGTA 59.745 55.000 30.64 0.00 42.56 2.74
1493 8447 0.254747 GGCCCAAGCATACAGTACCA 59.745 55.000 0.00 0.00 42.56 3.25
1495 8449 1.065418 GCCCAAGCATACAGTACCAGT 60.065 52.381 0.00 0.00 39.53 4.00
1496 8450 2.618045 GCCCAAGCATACAGTACCAGTT 60.618 50.000 0.00 0.00 39.53 3.16
1544 8528 7.039270 CCTTTGCTCATTCATTCATTCATTCA 58.961 34.615 0.00 0.00 0.00 2.57
1545 8529 7.710907 CCTTTGCTCATTCATTCATTCATTCAT 59.289 33.333 0.00 0.00 0.00 2.57
1546 8530 9.098355 CTTTGCTCATTCATTCATTCATTCATT 57.902 29.630 0.00 0.00 0.00 2.57
1547 8531 8.642908 TTGCTCATTCATTCATTCATTCATTC 57.357 30.769 0.00 0.00 0.00 2.67
1548 8532 7.777095 TGCTCATTCATTCATTCATTCATTCA 58.223 30.769 0.00 0.00 0.00 2.57
1549 8533 8.421002 TGCTCATTCATTCATTCATTCATTCAT 58.579 29.630 0.00 0.00 0.00 2.57
1550 8534 9.261180 GCTCATTCATTCATTCATTCATTCATT 57.739 29.630 0.00 0.00 0.00 2.57
1571 8559 6.311935 TCATTCAATTGTTACGTGGTAGTAGC 59.688 38.462 5.13 0.00 0.00 3.58
1573 8561 5.165676 TCAATTGTTACGTGGTAGTAGCAG 58.834 41.667 5.13 0.18 38.64 4.24
1574 8562 4.796038 ATTGTTACGTGGTAGTAGCAGT 57.204 40.909 1.37 6.06 38.64 4.40
1575 8563 5.902613 ATTGTTACGTGGTAGTAGCAGTA 57.097 39.130 1.37 5.15 38.64 2.74
1576 8564 4.952262 TGTTACGTGGTAGTAGCAGTAG 57.048 45.455 1.37 0.40 33.86 2.57
1577 8565 4.326826 TGTTACGTGGTAGTAGCAGTAGT 58.673 43.478 1.37 6.32 33.86 2.73
1578 8566 4.393062 TGTTACGTGGTAGTAGCAGTAGTC 59.607 45.833 1.37 6.03 33.86 2.59
1590 8578 7.668525 AGTAGCAGTAGTCCAAAATTTGTAC 57.331 36.000 4.92 0.00 0.00 2.90
1592 8580 6.803154 AGCAGTAGTCCAAAATTTGTACTC 57.197 37.500 7.22 1.11 31.85 2.59
1594 8582 6.998673 AGCAGTAGTCCAAAATTTGTACTCTT 59.001 34.615 7.22 0.00 31.85 2.85
1595 8583 7.041098 AGCAGTAGTCCAAAATTTGTACTCTTG 60.041 37.037 7.22 8.46 31.85 3.02
1596 8584 7.584987 CAGTAGTCCAAAATTTGTACTCTTGG 58.415 38.462 7.22 0.00 38.31 3.61
1597 8585 7.444183 CAGTAGTCCAAAATTTGTACTCTTGGA 59.556 37.037 7.22 2.10 42.47 3.53
1598 8586 6.884280 AGTCCAAAATTTGTACTCTTGGAG 57.116 37.500 4.92 0.00 44.65 3.86
1599 8587 6.365520 AGTCCAAAATTTGTACTCTTGGAGT 58.634 36.000 4.92 6.56 44.65 3.85
1648 8642 6.040054 TGAATACCTTTGGTCTCGATCGATTA 59.960 38.462 19.78 7.26 37.09 1.75
1659 8653 2.724977 GATCGATTATCGGTGCTCCA 57.275 50.000 14.86 0.00 40.88 3.86
1745 8743 0.329596 GGGGCTGACTTGTCATCCTT 59.670 55.000 19.05 0.00 0.00 3.36
1782 9046 1.891150 GACCTTGTTCGGTAGTCAGGA 59.109 52.381 0.00 0.00 37.42 3.86
1813 9082 1.623686 AGGGCATCCAATCCACCCT 60.624 57.895 0.00 0.00 46.35 4.34
1852 9121 3.441572 CACTCCTTCAACCAATCCATGTC 59.558 47.826 0.00 0.00 0.00 3.06
1853 9122 3.074390 ACTCCTTCAACCAATCCATGTCA 59.926 43.478 0.00 0.00 0.00 3.58
1890 9159 1.414061 CCCCTCAATCCCTCGCTCAT 61.414 60.000 0.00 0.00 0.00 2.90
1920 9208 0.178897 TCGGTTAAACCCCTCCTGGA 60.179 55.000 0.00 0.00 33.75 3.86
1977 9265 0.803117 CGTCGCTCAGAGTTCACCTA 59.197 55.000 0.00 0.00 0.00 3.08
2002 9291 0.031449 CCCGCGTGGTTTGTTTTCAT 59.969 50.000 15.14 0.00 0.00 2.57
2043 9333 2.482333 CCCCGTGTTTTTGCGTGGA 61.482 57.895 0.00 0.00 0.00 4.02
2045 9335 0.031449 CCCGTGTTTTTGCGTGGATT 59.969 50.000 0.00 0.00 0.00 3.01
2051 9345 0.965439 TTTTTGCGTGGATTGAGGGG 59.035 50.000 0.00 0.00 0.00 4.79
2055 9349 0.608035 TGCGTGGATTGAGGGGTTTC 60.608 55.000 0.00 0.00 0.00 2.78
2057 9351 1.024579 CGTGGATTGAGGGGTTTCGG 61.025 60.000 0.00 0.00 0.00 4.30
2091 9385 1.549170 ACTCGATGCTTAACCGAACCT 59.451 47.619 0.00 0.00 31.59 3.50
2105 9399 1.737838 GAACCTGCATGAACGGATGA 58.262 50.000 0.00 0.00 0.00 2.92
2179 11359 1.375013 GAACACCGCGTGTATGGGT 60.375 57.895 13.33 0.00 46.79 4.51
2185 11365 1.065998 ACCGCGTGTATGGGTGTAATT 60.066 47.619 4.92 0.00 31.52 1.40
2193 11373 5.522460 CGTGTATGGGTGTAATTAGACAAGG 59.478 44.000 14.11 0.00 0.00 3.61
2371 11556 8.486942 AAGTTACCAAAAATTTACTTAGGGCT 57.513 30.769 0.90 0.00 0.00 5.19
2378 11563 9.586435 CCAAAAATTTACTTAGGGCTTCTATTG 57.414 33.333 0.00 0.00 0.00 1.90
2410 11595 2.429610 GCCGGTAGACTAAGATCCAACA 59.570 50.000 1.90 0.00 0.00 3.33
2414 11599 4.496010 CGGTAGACTAAGATCCAACAGTCG 60.496 50.000 7.54 0.00 41.80 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.745489 GTGATGGAGGGGCAACGAC 60.745 63.158 0.00 0.00 37.60 4.34
1 2 2.668632 GTGATGGAGGGGCAACGA 59.331 61.111 0.00 0.00 37.60 3.85
3 4 2.438434 CGGTGATGGAGGGGCAAC 60.438 66.667 0.00 0.00 0.00 4.17
5 6 4.731853 TCCGGTGATGGAGGGGCA 62.732 66.667 0.00 0.00 33.05 5.36
11 12 2.359169 GCCAGACTCCGGTGATGGA 61.359 63.158 26.08 0.00 33.22 3.41
12 13 2.184020 TTGCCAGACTCCGGTGATGG 62.184 60.000 20.85 20.85 34.06 3.51
13 14 0.321564 TTTGCCAGACTCCGGTGATG 60.322 55.000 11.17 8.36 0.00 3.07
14 15 0.321653 GTTTGCCAGACTCCGGTGAT 60.322 55.000 11.17 0.00 0.00 3.06
15 16 1.070786 GTTTGCCAGACTCCGGTGA 59.929 57.895 11.17 0.00 0.00 4.02
16 17 1.966451 GGTTTGCCAGACTCCGGTG 60.966 63.158 0.00 0.00 34.09 4.94
17 18 1.705997 AAGGTTTGCCAGACTCCGGT 61.706 55.000 0.00 0.00 37.19 5.28
18 19 0.537371 AAAGGTTTGCCAGACTCCGG 60.537 55.000 0.00 0.00 37.19 5.14
19 20 1.318576 AAAAGGTTTGCCAGACTCCG 58.681 50.000 0.00 0.00 37.19 4.63
20 21 2.430694 ACAAAAAGGTTTGCCAGACTCC 59.569 45.455 0.00 0.00 46.84 3.85
21 22 3.801114 ACAAAAAGGTTTGCCAGACTC 57.199 42.857 0.00 0.00 46.84 3.36
22 23 4.278310 ACTACAAAAAGGTTTGCCAGACT 58.722 39.130 0.00 0.00 46.84 3.24
23 24 4.649088 ACTACAAAAAGGTTTGCCAGAC 57.351 40.909 0.00 0.00 46.84 3.51
24 25 5.194432 TGTACTACAAAAAGGTTTGCCAGA 58.806 37.500 0.00 0.00 46.84 3.86
25 26 5.508200 TGTACTACAAAAAGGTTTGCCAG 57.492 39.130 0.00 0.72 46.84 4.85
26 27 5.916661 TTGTACTACAAAAAGGTTTGCCA 57.083 34.783 0.00 0.00 46.84 4.92
27 28 6.334989 ACTTTGTACTACAAAAAGGTTTGCC 58.665 36.000 14.01 0.00 46.15 4.52
28 29 7.030768 TGACTTTGTACTACAAAAAGGTTTGC 58.969 34.615 14.01 1.40 46.15 3.68
29 30 8.973835 TTGACTTTGTACTACAAAAAGGTTTG 57.026 30.769 14.01 5.04 46.15 2.93
30 31 9.984190 TTTTGACTTTGTACTACAAAAAGGTTT 57.016 25.926 14.01 0.00 46.15 3.27
31 32 9.984190 TTTTTGACTTTGTACTACAAAAAGGTT 57.016 25.926 14.01 0.00 46.15 3.50
35 36 9.332301 CGACTTTTTGACTTTGTACTACAAAAA 57.668 29.630 14.01 0.00 46.15 1.94
36 37 8.505625 ACGACTTTTTGACTTTGTACTACAAAA 58.494 29.630 14.01 0.00 46.15 2.44
37 38 8.031848 ACGACTTTTTGACTTTGTACTACAAA 57.968 30.769 12.75 12.75 44.91 2.83
38 39 7.463119 CGACGACTTTTTGACTTTGTACTACAA 60.463 37.037 0.00 0.00 36.11 2.41
39 40 6.020440 CGACGACTTTTTGACTTTGTACTACA 60.020 38.462 0.00 0.00 0.00 2.74
40 41 6.020360 ACGACGACTTTTTGACTTTGTACTAC 60.020 38.462 0.00 0.00 0.00 2.73
41 42 6.020440 CACGACGACTTTTTGACTTTGTACTA 60.020 38.462 0.00 0.00 0.00 1.82
42 43 4.866486 ACGACGACTTTTTGACTTTGTACT 59.134 37.500 0.00 0.00 0.00 2.73
43 44 4.953814 CACGACGACTTTTTGACTTTGTAC 59.046 41.667 0.00 0.00 0.00 2.90
44 45 4.863689 TCACGACGACTTTTTGACTTTGTA 59.136 37.500 0.00 0.00 0.00 2.41
45 46 3.680937 TCACGACGACTTTTTGACTTTGT 59.319 39.130 0.00 0.00 0.00 2.83
46 47 4.253352 TCACGACGACTTTTTGACTTTG 57.747 40.909 0.00 0.00 0.00 2.77
47 48 6.292703 CCTTATCACGACGACTTTTTGACTTT 60.293 38.462 0.00 0.00 0.00 2.66
48 49 5.176958 CCTTATCACGACGACTTTTTGACTT 59.823 40.000 0.00 0.00 0.00 3.01
49 50 4.684703 CCTTATCACGACGACTTTTTGACT 59.315 41.667 0.00 0.00 0.00 3.41
50 51 4.665897 GCCTTATCACGACGACTTTTTGAC 60.666 45.833 0.00 0.00 0.00 3.18
51 52 3.430895 GCCTTATCACGACGACTTTTTGA 59.569 43.478 0.00 0.00 0.00 2.69
52 53 3.424433 GGCCTTATCACGACGACTTTTTG 60.424 47.826 0.00 0.00 0.00 2.44
53 54 2.740447 GGCCTTATCACGACGACTTTTT 59.260 45.455 0.00 0.00 0.00 1.94
54 55 2.289195 TGGCCTTATCACGACGACTTTT 60.289 45.455 3.32 0.00 0.00 2.27
55 56 1.274167 TGGCCTTATCACGACGACTTT 59.726 47.619 3.32 0.00 0.00 2.66
56 57 0.892755 TGGCCTTATCACGACGACTT 59.107 50.000 3.32 0.00 0.00 3.01
57 58 1.112113 ATGGCCTTATCACGACGACT 58.888 50.000 3.32 0.00 0.00 4.18
58 59 2.787601 TATGGCCTTATCACGACGAC 57.212 50.000 3.32 0.00 0.00 4.34
59 60 2.427812 TGTTATGGCCTTATCACGACGA 59.572 45.455 3.32 0.00 0.00 4.20
60 61 2.816689 TGTTATGGCCTTATCACGACG 58.183 47.619 3.32 0.00 0.00 5.12
61 62 3.936453 TGTTGTTATGGCCTTATCACGAC 59.064 43.478 3.32 8.88 0.00 4.34
62 63 4.209307 TGTTGTTATGGCCTTATCACGA 57.791 40.909 3.32 0.00 0.00 4.35
63 64 4.394920 AGTTGTTGTTATGGCCTTATCACG 59.605 41.667 3.32 0.00 0.00 4.35
64 65 5.640732 CAGTTGTTGTTATGGCCTTATCAC 58.359 41.667 3.32 0.00 0.00 3.06
65 66 4.157656 GCAGTTGTTGTTATGGCCTTATCA 59.842 41.667 3.32 4.70 0.00 2.15
66 67 4.399303 AGCAGTTGTTGTTATGGCCTTATC 59.601 41.667 3.32 1.70 0.00 1.75
67 68 4.158394 CAGCAGTTGTTGTTATGGCCTTAT 59.842 41.667 3.32 0.00 0.00 1.73
68 69 3.505680 CAGCAGTTGTTGTTATGGCCTTA 59.494 43.478 3.32 0.00 0.00 2.69
69 70 2.297033 CAGCAGTTGTTGTTATGGCCTT 59.703 45.455 3.32 0.00 0.00 4.35
70 71 1.888512 CAGCAGTTGTTGTTATGGCCT 59.111 47.619 3.32 0.00 0.00 5.19
71 72 1.669795 GCAGCAGTTGTTGTTATGGCC 60.670 52.381 0.00 0.00 0.00 5.36
72 73 1.270550 AGCAGCAGTTGTTGTTATGGC 59.729 47.619 0.00 0.00 0.00 4.40
73 74 2.553602 TCAGCAGCAGTTGTTGTTATGG 59.446 45.455 0.00 0.00 38.92 2.74
74 75 3.558505 GTCAGCAGCAGTTGTTGTTATG 58.441 45.455 0.00 0.00 38.92 1.90
75 76 2.224079 CGTCAGCAGCAGTTGTTGTTAT 59.776 45.455 0.00 0.00 38.92 1.89
76 77 1.597195 CGTCAGCAGCAGTTGTTGTTA 59.403 47.619 0.00 0.00 38.92 2.41
77 78 0.378257 CGTCAGCAGCAGTTGTTGTT 59.622 50.000 0.00 0.00 38.92 2.83
78 79 0.461870 TCGTCAGCAGCAGTTGTTGT 60.462 50.000 0.00 0.00 38.92 3.32
79 80 0.657312 TTCGTCAGCAGCAGTTGTTG 59.343 50.000 0.00 0.00 39.17 3.33
80 81 0.940126 CTTCGTCAGCAGCAGTTGTT 59.060 50.000 0.00 0.00 0.00 2.83
81 82 0.104855 TCTTCGTCAGCAGCAGTTGT 59.895 50.000 0.00 0.00 0.00 3.32
82 83 0.788995 CTCTTCGTCAGCAGCAGTTG 59.211 55.000 0.00 0.00 0.00 3.16
83 84 0.676184 TCTCTTCGTCAGCAGCAGTT 59.324 50.000 0.00 0.00 0.00 3.16
84 85 0.676184 TTCTCTTCGTCAGCAGCAGT 59.324 50.000 0.00 0.00 0.00 4.40
85 86 1.336702 ACTTCTCTTCGTCAGCAGCAG 60.337 52.381 0.00 0.00 0.00 4.24
86 87 0.676184 ACTTCTCTTCGTCAGCAGCA 59.324 50.000 0.00 0.00 0.00 4.41
87 88 1.789506 AACTTCTCTTCGTCAGCAGC 58.210 50.000 0.00 0.00 0.00 5.25
88 89 4.799678 TCTAAACTTCTCTTCGTCAGCAG 58.200 43.478 0.00 0.00 0.00 4.24
89 90 4.848562 TCTAAACTTCTCTTCGTCAGCA 57.151 40.909 0.00 0.00 0.00 4.41
90 91 5.403246 TGATCTAAACTTCTCTTCGTCAGC 58.597 41.667 0.00 0.00 0.00 4.26
91 92 7.875316 TTTGATCTAAACTTCTCTTCGTCAG 57.125 36.000 0.00 0.00 0.00 3.51
92 93 7.385205 CCTTTTGATCTAAACTTCTCTTCGTCA 59.615 37.037 0.00 0.00 0.00 4.35
93 94 7.599245 TCCTTTTGATCTAAACTTCTCTTCGTC 59.401 37.037 0.00 0.00 0.00 4.20
94 95 7.442656 TCCTTTTGATCTAAACTTCTCTTCGT 58.557 34.615 0.00 0.00 0.00 3.85
95 96 7.891183 TCCTTTTGATCTAAACTTCTCTTCG 57.109 36.000 0.00 0.00 0.00 3.79
98 99 8.386264 TTGGATCCTTTTGATCTAAACTTCTCT 58.614 33.333 14.23 0.00 44.92 3.10
99 100 8.567285 TTGGATCCTTTTGATCTAAACTTCTC 57.433 34.615 14.23 0.00 44.92 2.87
110 111 6.828785 GTGTATACTGGTTGGATCCTTTTGAT 59.171 38.462 14.23 0.78 36.01 2.57
111 112 6.177610 GTGTATACTGGTTGGATCCTTTTGA 58.822 40.000 14.23 0.00 0.00 2.69
112 113 5.943416 TGTGTATACTGGTTGGATCCTTTTG 59.057 40.000 14.23 2.25 0.00 2.44
113 114 5.944007 GTGTGTATACTGGTTGGATCCTTTT 59.056 40.000 14.23 0.00 0.00 2.27
114 115 5.497474 GTGTGTATACTGGTTGGATCCTTT 58.503 41.667 14.23 0.00 0.00 3.11
115 116 4.382685 CGTGTGTATACTGGTTGGATCCTT 60.383 45.833 14.23 0.00 0.00 3.36
116 117 3.132289 CGTGTGTATACTGGTTGGATCCT 59.868 47.826 14.23 0.00 0.00 3.24
117 118 3.131577 TCGTGTGTATACTGGTTGGATCC 59.868 47.826 4.20 4.20 0.00 3.36
118 119 4.380841 TCGTGTGTATACTGGTTGGATC 57.619 45.455 4.17 0.00 0.00 3.36
119 120 4.020928 TGTTCGTGTGTATACTGGTTGGAT 60.021 41.667 4.17 0.00 0.00 3.41
120 121 3.321396 TGTTCGTGTGTATACTGGTTGGA 59.679 43.478 4.17 0.00 0.00 3.53
121 122 3.655486 TGTTCGTGTGTATACTGGTTGG 58.345 45.455 4.17 0.00 0.00 3.77
122 123 6.252869 GTCTATGTTCGTGTGTATACTGGTTG 59.747 42.308 4.17 0.00 0.00 3.77
123 124 6.327934 GTCTATGTTCGTGTGTATACTGGTT 58.672 40.000 4.17 0.00 0.00 3.67
124 125 5.163581 GGTCTATGTTCGTGTGTATACTGGT 60.164 44.000 4.17 0.00 0.00 4.00
125 126 5.279384 GGTCTATGTTCGTGTGTATACTGG 58.721 45.833 4.17 0.00 0.00 4.00
126 127 4.968181 CGGTCTATGTTCGTGTGTATACTG 59.032 45.833 4.17 0.00 0.00 2.74
127 128 4.877823 TCGGTCTATGTTCGTGTGTATACT 59.122 41.667 4.17 0.00 0.00 2.12
128 129 5.160699 TCGGTCTATGTTCGTGTGTATAC 57.839 43.478 0.00 0.00 0.00 1.47
129 130 5.816449 TTCGGTCTATGTTCGTGTGTATA 57.184 39.130 0.00 0.00 0.00 1.47
130 131 4.707030 TTCGGTCTATGTTCGTGTGTAT 57.293 40.909 0.00 0.00 0.00 2.29
131 132 4.439153 GGATTCGGTCTATGTTCGTGTGTA 60.439 45.833 0.00 0.00 0.00 2.90
132 133 3.508762 GATTCGGTCTATGTTCGTGTGT 58.491 45.455 0.00 0.00 0.00 3.72
133 134 2.858344 GGATTCGGTCTATGTTCGTGTG 59.142 50.000 0.00 0.00 0.00 3.82
134 135 2.494471 TGGATTCGGTCTATGTTCGTGT 59.506 45.455 0.00 0.00 0.00 4.49
135 136 2.858344 GTGGATTCGGTCTATGTTCGTG 59.142 50.000 0.00 0.00 0.00 4.35
136 137 2.159142 GGTGGATTCGGTCTATGTTCGT 60.159 50.000 0.00 0.00 0.00 3.85
137 138 2.470821 GGTGGATTCGGTCTATGTTCG 58.529 52.381 0.00 0.00 0.00 3.95
138 139 2.100252 TCGGTGGATTCGGTCTATGTTC 59.900 50.000 0.00 0.00 0.00 3.18
139 140 2.104967 TCGGTGGATTCGGTCTATGTT 58.895 47.619 0.00 0.00 0.00 2.71
140 141 1.771565 TCGGTGGATTCGGTCTATGT 58.228 50.000 0.00 0.00 0.00 2.29
141 142 2.361119 TCTTCGGTGGATTCGGTCTATG 59.639 50.000 0.00 0.00 0.00 2.23
142 143 2.361438 GTCTTCGGTGGATTCGGTCTAT 59.639 50.000 0.00 0.00 0.00 1.98
143 144 1.747355 GTCTTCGGTGGATTCGGTCTA 59.253 52.381 0.00 0.00 0.00 2.59
144 145 0.531200 GTCTTCGGTGGATTCGGTCT 59.469 55.000 0.00 0.00 0.00 3.85
145 146 0.245539 TGTCTTCGGTGGATTCGGTC 59.754 55.000 0.00 0.00 0.00 4.79
146 147 0.682852 TTGTCTTCGGTGGATTCGGT 59.317 50.000 0.00 0.00 0.00 4.69
147 148 1.359848 CTTGTCTTCGGTGGATTCGG 58.640 55.000 0.00 0.00 0.00 4.30
148 149 0.721718 GCTTGTCTTCGGTGGATTCG 59.278 55.000 0.00 0.00 0.00 3.34
149 150 1.808411 TGCTTGTCTTCGGTGGATTC 58.192 50.000 0.00 0.00 0.00 2.52
150 151 2.290260 TGATGCTTGTCTTCGGTGGATT 60.290 45.455 0.00 0.00 0.00 3.01
151 152 1.278985 TGATGCTTGTCTTCGGTGGAT 59.721 47.619 0.00 0.00 0.00 3.41
152 153 0.684535 TGATGCTTGTCTTCGGTGGA 59.315 50.000 0.00 0.00 0.00 4.02
153 154 1.522668 TTGATGCTTGTCTTCGGTGG 58.477 50.000 0.00 0.00 0.00 4.61
154 155 2.222886 CGATTGATGCTTGTCTTCGGTG 60.223 50.000 0.00 0.00 0.00 4.94
155 156 2.002586 CGATTGATGCTTGTCTTCGGT 58.997 47.619 0.00 0.00 0.00 4.69
156 157 2.029728 GTCGATTGATGCTTGTCTTCGG 59.970 50.000 0.00 0.00 0.00 4.30
157 158 2.926200 AGTCGATTGATGCTTGTCTTCG 59.074 45.455 0.00 0.00 0.00 3.79
158 159 3.308323 GGAGTCGATTGATGCTTGTCTTC 59.692 47.826 0.00 0.00 0.00 2.87
159 160 3.055530 AGGAGTCGATTGATGCTTGTCTT 60.056 43.478 0.00 0.00 0.00 3.01
160 161 2.499289 AGGAGTCGATTGATGCTTGTCT 59.501 45.455 0.00 0.00 0.00 3.41
161 162 2.898705 AGGAGTCGATTGATGCTTGTC 58.101 47.619 0.00 0.00 0.00 3.18
162 163 3.195610 TGTAGGAGTCGATTGATGCTTGT 59.804 43.478 0.00 0.00 0.00 3.16
163 164 3.785486 TGTAGGAGTCGATTGATGCTTG 58.215 45.455 0.00 0.00 0.00 4.01
164 165 4.160439 TCTTGTAGGAGTCGATTGATGCTT 59.840 41.667 0.00 0.00 0.00 3.91
165 166 3.701542 TCTTGTAGGAGTCGATTGATGCT 59.298 43.478 0.00 0.00 0.00 3.79
166 167 4.046938 TCTTGTAGGAGTCGATTGATGC 57.953 45.455 0.00 0.00 0.00 3.91
167 168 5.226396 GGATCTTGTAGGAGTCGATTGATG 58.774 45.833 0.00 0.00 0.00 3.07
168 169 4.022762 CGGATCTTGTAGGAGTCGATTGAT 60.023 45.833 0.00 0.00 0.00 2.57
169 170 3.315470 CGGATCTTGTAGGAGTCGATTGA 59.685 47.826 0.00 0.00 0.00 2.57
170 171 3.633235 CGGATCTTGTAGGAGTCGATTG 58.367 50.000 0.00 0.00 0.00 2.67
171 172 2.034812 GCGGATCTTGTAGGAGTCGATT 59.965 50.000 0.00 0.00 0.00 3.34
172 173 1.609555 GCGGATCTTGTAGGAGTCGAT 59.390 52.381 0.00 0.00 0.00 3.59
173 174 1.022735 GCGGATCTTGTAGGAGTCGA 58.977 55.000 0.00 0.00 0.00 4.20
174 175 0.030908 GGCGGATCTTGTAGGAGTCG 59.969 60.000 0.00 0.00 0.00 4.18
175 176 0.030908 CGGCGGATCTTGTAGGAGTC 59.969 60.000 0.00 0.00 0.00 3.36
176 177 1.392710 CCGGCGGATCTTGTAGGAGT 61.393 60.000 24.41 0.00 0.00 3.85
177 178 1.107538 TCCGGCGGATCTTGTAGGAG 61.108 60.000 27.46 0.00 0.00 3.69
178 179 1.076559 TCCGGCGGATCTTGTAGGA 60.077 57.895 27.46 0.00 0.00 2.94
179 180 1.107538 TCTCCGGCGGATCTTGTAGG 61.108 60.000 31.23 15.25 0.00 3.18
180 181 0.030908 GTCTCCGGCGGATCTTGTAG 59.969 60.000 31.23 16.05 0.00 2.74
181 182 0.681887 TGTCTCCGGCGGATCTTGTA 60.682 55.000 31.23 10.09 0.00 2.41
182 183 1.949847 CTGTCTCCGGCGGATCTTGT 61.950 60.000 31.23 0.00 0.00 3.16
183 184 1.227089 CTGTCTCCGGCGGATCTTG 60.227 63.158 31.23 18.07 0.00 3.02
184 185 1.379977 TCTGTCTCCGGCGGATCTT 60.380 57.895 31.23 0.00 0.00 2.40
185 186 2.122167 GTCTGTCTCCGGCGGATCT 61.122 63.158 31.23 0.00 0.00 2.75
186 187 2.413765 GTCTGTCTCCGGCGGATC 59.586 66.667 31.23 24.22 0.00 3.36
187 188 3.148279 GGTCTGTCTCCGGCGGAT 61.148 66.667 31.23 0.00 0.00 4.18
188 189 4.361971 AGGTCTGTCTCCGGCGGA 62.362 66.667 29.14 29.14 0.00 5.54
189 190 3.827898 GAGGTCTGTCTCCGGCGG 61.828 72.222 22.51 22.51 0.00 6.13
190 191 3.827898 GGAGGTCTGTCTCCGGCG 61.828 72.222 0.00 0.00 43.19 6.46
195 196 1.080434 GCGTGTGGAGGTCTGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
196 197 2.574955 GGCGTGTGGAGGTCTGTCT 61.575 63.158 0.00 0.00 0.00 3.41
197 198 2.048127 GGCGTGTGGAGGTCTGTC 60.048 66.667 0.00 0.00 0.00 3.51
198 199 3.626924 GGGCGTGTGGAGGTCTGT 61.627 66.667 0.00 0.00 0.00 3.41
199 200 3.302347 GAGGGCGTGTGGAGGTCTG 62.302 68.421 0.00 0.00 0.00 3.51
200 201 2.997897 GAGGGCGTGTGGAGGTCT 60.998 66.667 0.00 0.00 0.00 3.85
201 202 4.083862 GGAGGGCGTGTGGAGGTC 62.084 72.222 0.00 0.00 0.00 3.85
204 205 4.436998 GTCGGAGGGCGTGTGGAG 62.437 72.222 0.00 0.00 0.00 3.86
207 208 4.129737 ATCGTCGGAGGGCGTGTG 62.130 66.667 0.00 0.00 0.00 3.82
208 209 4.129737 CATCGTCGGAGGGCGTGT 62.130 66.667 0.00 0.00 0.00 4.49
211 212 3.544167 CTAGCATCGTCGGAGGGCG 62.544 68.421 0.00 0.00 33.15 6.13
212 213 1.735376 TTCTAGCATCGTCGGAGGGC 61.735 60.000 0.00 0.00 0.00 5.19
213 214 0.744874 TTTCTAGCATCGTCGGAGGG 59.255 55.000 0.00 0.00 0.00 4.30
214 215 1.134367 TGTTTCTAGCATCGTCGGAGG 59.866 52.381 0.00 0.00 0.00 4.30
215 216 2.561733 TGTTTCTAGCATCGTCGGAG 57.438 50.000 0.00 0.00 0.00 4.63
216 217 2.688446 AGATGTTTCTAGCATCGTCGGA 59.312 45.455 0.00 0.00 45.25 4.55
217 218 3.046390 GAGATGTTTCTAGCATCGTCGG 58.954 50.000 0.00 0.00 45.25 4.79
218 219 3.046390 GGAGATGTTTCTAGCATCGTCG 58.954 50.000 3.95 0.00 45.25 5.12
219 220 3.046390 CGGAGATGTTTCTAGCATCGTC 58.954 50.000 3.95 0.00 45.25 4.20
220 221 2.688446 TCGGAGATGTTTCTAGCATCGT 59.312 45.455 3.95 0.00 45.25 3.73
221 222 3.003793 TCTCGGAGATGTTTCTAGCATCG 59.996 47.826 2.97 0.00 45.25 3.84
222 223 4.576216 TCTCGGAGATGTTTCTAGCATC 57.424 45.455 2.97 1.70 42.08 3.91
223 224 4.880759 CATCTCGGAGATGTTTCTAGCAT 58.119 43.478 30.89 2.13 45.33 3.79
224 225 4.313277 CATCTCGGAGATGTTTCTAGCA 57.687 45.455 30.89 0.00 45.33 3.49
237 238 1.531840 GCCTAGCTCCCATCTCGGA 60.532 63.158 0.00 0.00 36.56 4.55
238 239 2.925262 CGCCTAGCTCCCATCTCGG 61.925 68.421 0.00 0.00 0.00 4.63
239 240 2.647875 CGCCTAGCTCCCATCTCG 59.352 66.667 0.00 0.00 0.00 4.04
240 241 1.115930 TTCCGCCTAGCTCCCATCTC 61.116 60.000 0.00 0.00 0.00 2.75
241 242 0.691078 TTTCCGCCTAGCTCCCATCT 60.691 55.000 0.00 0.00 0.00 2.90
242 243 0.250081 CTTTCCGCCTAGCTCCCATC 60.250 60.000 0.00 0.00 0.00 3.51
243 244 0.691078 TCTTTCCGCCTAGCTCCCAT 60.691 55.000 0.00 0.00 0.00 4.00
244 245 0.907704 TTCTTTCCGCCTAGCTCCCA 60.908 55.000 0.00 0.00 0.00 4.37
245 246 0.470341 ATTCTTTCCGCCTAGCTCCC 59.530 55.000 0.00 0.00 0.00 4.30
246 247 1.414550 AGATTCTTTCCGCCTAGCTCC 59.585 52.381 0.00 0.00 0.00 4.70
247 248 2.900716 AGATTCTTTCCGCCTAGCTC 57.099 50.000 0.00 0.00 0.00 4.09
248 249 4.262678 GGATAAGATTCTTTCCGCCTAGCT 60.263 45.833 3.86 0.00 0.00 3.32
249 250 3.997681 GGATAAGATTCTTTCCGCCTAGC 59.002 47.826 3.86 0.00 0.00 3.42
250 251 5.476091 AGGATAAGATTCTTTCCGCCTAG 57.524 43.478 3.86 0.00 33.35 3.02
251 252 7.554959 AATAGGATAAGATTCTTTCCGCCTA 57.445 36.000 3.86 10.40 33.35 3.93
252 253 6.441088 AATAGGATAAGATTCTTTCCGCCT 57.559 37.500 3.86 8.74 33.35 5.52
253 254 7.228706 TGAAAATAGGATAAGATTCTTTCCGCC 59.771 37.037 3.86 1.98 33.35 6.13
254 255 8.154649 TGAAAATAGGATAAGATTCTTTCCGC 57.845 34.615 3.86 0.00 33.35 5.54
262 263 9.692325 ACAGCTCTTTGAAAATAGGATAAGATT 57.308 29.630 0.00 0.00 0.00 2.40
263 264 9.336171 GACAGCTCTTTGAAAATAGGATAAGAT 57.664 33.333 0.00 0.00 0.00 2.40
264 265 8.321353 TGACAGCTCTTTGAAAATAGGATAAGA 58.679 33.333 0.00 0.00 0.00 2.10
265 266 8.394121 GTGACAGCTCTTTGAAAATAGGATAAG 58.606 37.037 0.00 0.00 0.00 1.73
266 267 7.336931 GGTGACAGCTCTTTGAAAATAGGATAA 59.663 37.037 0.00 0.00 0.00 1.75
267 268 6.823689 GGTGACAGCTCTTTGAAAATAGGATA 59.176 38.462 0.00 0.00 0.00 2.59
268 269 5.649831 GGTGACAGCTCTTTGAAAATAGGAT 59.350 40.000 0.00 0.00 0.00 3.24
269 270 5.003804 GGTGACAGCTCTTTGAAAATAGGA 58.996 41.667 0.00 0.00 0.00 2.94
270 271 4.142816 CGGTGACAGCTCTTTGAAAATAGG 60.143 45.833 2.72 0.00 0.00 2.57
271 272 4.670221 GCGGTGACAGCTCTTTGAAAATAG 60.670 45.833 0.00 0.00 0.00 1.73
272 273 3.188460 GCGGTGACAGCTCTTTGAAAATA 59.812 43.478 0.00 0.00 0.00 1.40
273 274 2.030805 GCGGTGACAGCTCTTTGAAAAT 60.031 45.455 0.00 0.00 0.00 1.82
274 275 1.333619 GCGGTGACAGCTCTTTGAAAA 59.666 47.619 0.00 0.00 0.00 2.29
275 276 0.944386 GCGGTGACAGCTCTTTGAAA 59.056 50.000 0.00 0.00 0.00 2.69
276 277 0.884704 GGCGGTGACAGCTCTTTGAA 60.885 55.000 7.77 0.00 34.52 2.69
277 278 1.301716 GGCGGTGACAGCTCTTTGA 60.302 57.895 7.77 0.00 34.52 2.69
278 279 1.294659 GAGGCGGTGACAGCTCTTTG 61.295 60.000 7.77 0.00 34.52 2.77
279 280 1.004440 GAGGCGGTGACAGCTCTTT 60.004 57.895 7.77 0.00 34.52 2.52
280 281 2.210013 TGAGGCGGTGACAGCTCTT 61.210 57.895 7.77 0.00 34.52 2.85
281 282 2.601666 TGAGGCGGTGACAGCTCT 60.602 61.111 7.77 3.09 34.52 4.09
282 283 2.433318 GTGAGGCGGTGACAGCTC 60.433 66.667 7.77 4.20 34.52 4.09
283 284 4.008933 GGTGAGGCGGTGACAGCT 62.009 66.667 7.77 0.00 34.52 4.24
284 285 2.167398 TAAGGTGAGGCGGTGACAGC 62.167 60.000 0.00 0.00 0.00 4.40
285 286 0.389948 GTAAGGTGAGGCGGTGACAG 60.390 60.000 0.00 0.00 0.00 3.51
286 287 0.830444 AGTAAGGTGAGGCGGTGACA 60.830 55.000 0.00 0.00 0.00 3.58
287 288 0.389948 CAGTAAGGTGAGGCGGTGAC 60.390 60.000 0.00 0.00 0.00 3.67
288 289 0.541063 TCAGTAAGGTGAGGCGGTGA 60.541 55.000 0.00 0.00 0.00 4.02
289 290 0.320374 TTCAGTAAGGTGAGGCGGTG 59.680 55.000 0.00 0.00 0.00 4.94
290 291 1.276622 ATTCAGTAAGGTGAGGCGGT 58.723 50.000 0.00 0.00 0.00 5.68
291 292 2.224066 CCTATTCAGTAAGGTGAGGCGG 60.224 54.545 0.00 0.00 0.00 6.13
292 293 2.693591 TCCTATTCAGTAAGGTGAGGCG 59.306 50.000 0.00 0.00 34.30 5.52
293 294 3.451178 TGTCCTATTCAGTAAGGTGAGGC 59.549 47.826 0.00 0.00 34.30 4.70
294 295 4.466370 TGTGTCCTATTCAGTAAGGTGAGG 59.534 45.833 0.00 0.00 34.30 3.86
295 296 5.661056 TGTGTCCTATTCAGTAAGGTGAG 57.339 43.478 0.00 0.00 34.30 3.51
296 297 6.428083 TTTGTGTCCTATTCAGTAAGGTGA 57.572 37.500 0.00 0.00 34.30 4.02
297 298 6.878923 TGATTTGTGTCCTATTCAGTAAGGTG 59.121 38.462 0.00 0.00 34.30 4.00
298 299 7.016153 TGATTTGTGTCCTATTCAGTAAGGT 57.984 36.000 0.00 0.00 34.30 3.50
299 300 9.613428 TTATGATTTGTGTCCTATTCAGTAAGG 57.387 33.333 0.00 0.00 0.00 2.69
303 304 9.739276 TTCTTTATGATTTGTGTCCTATTCAGT 57.261 29.630 0.00 0.00 0.00 3.41
308 309 9.739276 TCAGTTTCTTTATGATTTGTGTCCTAT 57.261 29.630 0.00 0.00 0.00 2.57
309 310 9.567776 TTCAGTTTCTTTATGATTTGTGTCCTA 57.432 29.630 0.00 0.00 0.00 2.94
310 311 8.463930 TTCAGTTTCTTTATGATTTGTGTCCT 57.536 30.769 0.00 0.00 0.00 3.85
311 312 9.528018 TTTTCAGTTTCTTTATGATTTGTGTCC 57.472 29.630 0.00 0.00 0.00 4.02
316 317 9.833894 CGTGTTTTTCAGTTTCTTTATGATTTG 57.166 29.630 0.00 0.00 0.00 2.32
317 318 9.581099 ACGTGTTTTTCAGTTTCTTTATGATTT 57.419 25.926 0.00 0.00 0.00 2.17
319 320 9.878599 CTACGTGTTTTTCAGTTTCTTTATGAT 57.121 29.630 0.00 0.00 0.00 2.45
320 321 9.100554 TCTACGTGTTTTTCAGTTTCTTTATGA 57.899 29.630 0.00 0.00 0.00 2.15
321 322 9.710979 TTCTACGTGTTTTTCAGTTTCTTTATG 57.289 29.630 0.00 0.00 0.00 1.90
323 324 9.545611 GTTTCTACGTGTTTTTCAGTTTCTTTA 57.454 29.630 0.00 0.00 0.00 1.85
324 325 7.269724 CGTTTCTACGTGTTTTTCAGTTTCTTT 59.730 33.333 0.00 0.00 42.72 2.52
325 326 6.739550 CGTTTCTACGTGTTTTTCAGTTTCTT 59.260 34.615 0.00 0.00 42.72 2.52
326 327 6.245724 CGTTTCTACGTGTTTTTCAGTTTCT 58.754 36.000 0.00 0.00 42.72 2.52
327 328 5.450066 CCGTTTCTACGTGTTTTTCAGTTTC 59.550 40.000 0.00 0.00 46.20 2.78
328 329 5.122082 TCCGTTTCTACGTGTTTTTCAGTTT 59.878 36.000 0.00 0.00 46.20 2.66
329 330 4.630940 TCCGTTTCTACGTGTTTTTCAGTT 59.369 37.500 0.00 0.00 46.20 3.16
330 331 4.183101 TCCGTTTCTACGTGTTTTTCAGT 58.817 39.130 0.00 0.00 46.20 3.41
331 332 4.269363 ACTCCGTTTCTACGTGTTTTTCAG 59.731 41.667 0.00 0.00 46.20 3.02
332 333 4.183101 ACTCCGTTTCTACGTGTTTTTCA 58.817 39.130 0.00 0.00 46.20 2.69
333 334 4.783959 ACTCCGTTTCTACGTGTTTTTC 57.216 40.909 0.00 0.00 46.20 2.29
334 335 4.872124 AGAACTCCGTTTCTACGTGTTTTT 59.128 37.500 0.00 0.00 46.20 1.94
335 336 4.436332 AGAACTCCGTTTCTACGTGTTTT 58.564 39.130 0.00 0.00 46.20 2.43
336 337 4.047142 GAGAACTCCGTTTCTACGTGTTT 58.953 43.478 0.00 0.00 46.20 2.83
337 338 3.551659 GGAGAACTCCGTTTCTACGTGTT 60.552 47.826 0.00 0.00 46.20 3.32
338 339 2.030451 GGAGAACTCCGTTTCTACGTGT 60.030 50.000 0.00 0.00 46.20 4.49
339 340 2.593257 GGAGAACTCCGTTTCTACGTG 58.407 52.381 0.00 0.00 46.20 4.49
351 352 0.173708 CGTAGCCAGTGGGAGAACTC 59.826 60.000 12.15 0.00 35.59 3.01
352 353 0.542232 ACGTAGCCAGTGGGAGAACT 60.542 55.000 12.15 1.03 35.59 3.01
353 354 0.389948 CACGTAGCCAGTGGGAGAAC 60.390 60.000 12.15 0.00 36.06 3.01
354 355 1.972198 CACGTAGCCAGTGGGAGAA 59.028 57.895 12.15 0.00 36.06 2.87
355 356 2.646175 GCACGTAGCCAGTGGGAGA 61.646 63.158 12.15 0.00 39.80 3.71
356 357 2.125512 GCACGTAGCCAGTGGGAG 60.126 66.667 12.15 0.00 39.80 4.30
398 402 1.734388 AACGGTTTGCTTGGGAGTGC 61.734 55.000 0.00 0.00 0.00 4.40
414 418 5.621197 TGGAAAAGTGGTATTCATCAACG 57.379 39.130 0.00 0.00 0.00 4.10
420 424 4.258543 GTCGGATGGAAAAGTGGTATTCA 58.741 43.478 0.00 0.00 0.00 2.57
431 435 0.037697 CCACTGTCGTCGGATGGAAA 60.038 55.000 0.00 0.00 31.69 3.13
432 436 1.589630 CCACTGTCGTCGGATGGAA 59.410 57.895 0.00 0.00 31.69 3.53
458 462 2.618442 TGCTATTCATGCCATGTCGA 57.382 45.000 4.31 0.00 0.00 4.20
543 551 3.901797 CTTGGCAGGGTGGACGTCC 62.902 68.421 28.17 28.17 0.00 4.79
569 578 0.609681 TAGATTTTGGCCCCGCGTTT 60.610 50.000 4.92 0.00 0.00 3.60
570 579 0.609681 TTAGATTTTGGCCCCGCGTT 60.610 50.000 4.92 0.00 0.00 4.84
576 585 3.257375 ACGGAAAAGTTAGATTTTGGCCC 59.743 43.478 0.00 0.00 32.62 5.80
577 586 4.482386 GACGGAAAAGTTAGATTTTGGCC 58.518 43.478 0.00 0.00 32.62 5.36
627 636 0.679321 CCTGGAGGAGAAAAGCAGGC 60.679 60.000 0.00 0.00 37.39 4.85
645 654 2.107141 CGGCCGAGATGGTTCTCC 59.893 66.667 24.07 0.00 44.76 3.71
1471 8405 0.254747 TACTGTATGCTTGGGCCCAC 59.745 55.000 28.70 15.82 37.74 4.61
1475 8409 1.065418 ACTGGTACTGTATGCTTGGGC 60.065 52.381 0.00 0.00 39.19 5.36
1486 8420 5.333111 GCAAGACGAAACTAAACTGGTACTG 60.333 44.000 0.00 0.00 0.00 2.74
1490 8444 3.537580 TGCAAGACGAAACTAAACTGGT 58.462 40.909 0.00 0.00 0.00 4.00
1493 8447 6.258068 GGCTATATGCAAGACGAAACTAAACT 59.742 38.462 0.00 0.00 45.15 2.66
1495 8449 5.526111 GGGCTATATGCAAGACGAAACTAAA 59.474 40.000 0.00 0.00 45.15 1.85
1496 8450 5.054477 GGGCTATATGCAAGACGAAACTAA 58.946 41.667 0.00 0.00 45.15 2.24
1544 8528 7.681939 ACTACCACGTAACAATTGAATGAAT 57.318 32.000 13.59 0.40 0.00 2.57
1545 8529 7.148540 GCTACTACCACGTAACAATTGAATGAA 60.149 37.037 13.59 0.00 0.00 2.57
1546 8530 6.311935 GCTACTACCACGTAACAATTGAATGA 59.688 38.462 13.59 0.00 0.00 2.57
1547 8531 6.091577 TGCTACTACCACGTAACAATTGAATG 59.908 38.462 13.59 7.75 0.00 2.67
1548 8532 6.167685 TGCTACTACCACGTAACAATTGAAT 58.832 36.000 13.59 3.03 0.00 2.57
1549 8533 5.539979 TGCTACTACCACGTAACAATTGAA 58.460 37.500 13.59 0.00 0.00 2.69
1550 8534 5.136816 TGCTACTACCACGTAACAATTGA 57.863 39.130 13.59 0.00 0.00 2.57
1551 8535 4.927425 ACTGCTACTACCACGTAACAATTG 59.073 41.667 3.24 3.24 0.00 2.32
1552 8536 5.143376 ACTGCTACTACCACGTAACAATT 57.857 39.130 0.00 0.00 0.00 2.32
1561 8549 4.796038 TTTGGACTACTGCTACTACCAC 57.204 45.455 0.00 0.00 0.00 4.16
1576 8564 6.635030 ACTCCAAGAGTACAAATTTTGGAC 57.365 37.500 15.42 15.42 45.09 4.02
1577 8565 6.831353 TCAACTCCAAGAGTACAAATTTTGGA 59.169 34.615 13.42 1.70 42.59 3.53
1578 8566 7.038154 TCAACTCCAAGAGTACAAATTTTGG 57.962 36.000 13.42 1.90 42.59 3.28
1590 8578 2.775890 ACTGTGCATCAACTCCAAGAG 58.224 47.619 0.00 0.00 35.52 2.85
1592 8580 5.181811 TCAATTACTGTGCATCAACTCCAAG 59.818 40.000 0.00 0.00 0.00 3.61
1594 8582 4.650734 TCAATTACTGTGCATCAACTCCA 58.349 39.130 0.00 0.00 0.00 3.86
1595 8583 5.587844 AGATCAATTACTGTGCATCAACTCC 59.412 40.000 0.00 0.00 0.00 3.85
1596 8584 6.674694 AGATCAATTACTGTGCATCAACTC 57.325 37.500 0.00 0.00 0.00 3.01
1597 8585 7.772292 ACATAGATCAATTACTGTGCATCAACT 59.228 33.333 0.00 0.00 0.00 3.16
1598 8586 7.854422 CACATAGATCAATTACTGTGCATCAAC 59.146 37.037 0.00 0.00 0.00 3.18
1599 8587 7.769970 TCACATAGATCAATTACTGTGCATCAA 59.230 33.333 0.00 0.00 35.22 2.57
1648 8642 3.483954 CAATTCCTGGAGCACCGAT 57.516 52.632 0.00 0.00 39.42 4.18
1658 8652 3.834231 AGAAACCCACAATCCAATTCCTG 59.166 43.478 0.00 0.00 0.00 3.86
1659 8653 4.132122 AGAAACCCACAATCCAATTCCT 57.868 40.909 0.00 0.00 0.00 3.36
1745 8743 1.074889 GGTCTAAAGGGTTTGGAGCCA 59.925 52.381 4.20 0.00 46.09 4.75
1836 9105 3.805066 TCCTGACATGGATTGGTTGAA 57.195 42.857 0.00 0.00 0.00 2.69
1852 9121 5.158889 AGGGGATCTAGAGGTTTAATCCTG 58.841 45.833 9.89 0.00 38.02 3.86
1853 9122 5.102609 TGAGGGGATCTAGAGGTTTAATCCT 60.103 44.000 4.69 4.69 40.97 3.24
1890 9159 3.759618 GGGTTTAACCGAACATGATTGGA 59.240 43.478 15.88 0.00 39.83 3.53
1977 9265 3.868985 AAACCACGCGGGACCAGT 61.869 61.111 11.66 0.00 41.15 4.00
2002 9291 2.184533 ACATAATCGTCACCTCACCCA 58.815 47.619 0.00 0.00 0.00 4.51
2043 9333 0.251608 CCCAACCGAAACCCCTCAAT 60.252 55.000 0.00 0.00 0.00 2.57
2045 9335 1.354168 TTCCCAACCGAAACCCCTCA 61.354 55.000 0.00 0.00 0.00 3.86
2051 9345 1.658114 GGCTGTTCCCAACCGAAAC 59.342 57.895 0.00 0.00 0.00 2.78
2073 9367 2.004583 CAGGTTCGGTTAAGCATCGA 57.995 50.000 5.38 0.00 38.08 3.59
2076 9370 1.745087 CATGCAGGTTCGGTTAAGCAT 59.255 47.619 5.38 0.00 42.82 3.79
2077 9371 1.164411 CATGCAGGTTCGGTTAAGCA 58.836 50.000 5.38 0.00 38.08 3.91
2091 9385 4.223800 GGCTCATCCGTTCATGCA 57.776 55.556 0.00 0.00 0.00 3.96
2179 11359 6.127140 GCCCTCTAAGTCCTTGTCTAATTACA 60.127 42.308 0.00 0.00 0.00 2.41
2185 11365 3.366396 CAGCCCTCTAAGTCCTTGTCTA 58.634 50.000 0.00 0.00 0.00 2.59
2193 11373 4.342862 TTCATATGCAGCCCTCTAAGTC 57.657 45.455 0.00 0.00 0.00 3.01
2236 11420 4.595781 AGTGTGTATTTGGTTACTCCCAGA 59.404 41.667 0.00 0.00 35.49 3.86
2371 11556 8.208224 TCTACCGGCATAGAAAATTCAATAGAA 58.792 33.333 0.00 0.00 38.31 2.10
2378 11563 7.208080 TCTTAGTCTACCGGCATAGAAAATTC 58.792 38.462 0.00 0.00 32.97 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.