Multiple sequence alignment - TraesCS3A01G490000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G490000 chr3A 100.000 5248 0 0 1 5248 717627557 717622310 0.000000e+00 9692
1 TraesCS3A01G490000 chr3A 79.963 539 98 9 3497 4031 717658699 717658167 6.370000e-104 388
2 TraesCS3A01G490000 chr3A 79.779 544 99 11 3493 4031 717677070 717676533 8.240000e-103 385
3 TraesCS3A01G490000 chr3A 97.990 199 4 0 373 571 634755109 634754911 3.890000e-91 346
4 TraesCS3A01G490000 chr3A 96.135 207 8 0 368 574 391372004 391372210 6.510000e-89 339
5 TraesCS3A01G490000 chr3B 89.424 2326 156 29 570 2866 785428729 785426465 0.000000e+00 2850
6 TraesCS3A01G490000 chr3B 90.943 1590 120 7 1287 2865 785469627 785468051 0.000000e+00 2117
7 TraesCS3A01G490000 chr3B 90.750 800 72 2 3451 4248 785468044 785467245 0.000000e+00 1066
8 TraesCS3A01G490000 chr3B 85.251 1017 127 17 4245 5247 785425531 785424524 0.000000e+00 1026
9 TraesCS3A01G490000 chr3B 88.482 764 78 6 3080 3836 785357565 785356805 0.000000e+00 915
10 TraesCS3A01G490000 chr3B 89.043 721 79 0 3528 4248 785426284 785425564 0.000000e+00 894
11 TraesCS3A01G490000 chr3B 87.673 722 89 0 3527 4248 785462968 785462247 0.000000e+00 841
12 TraesCS3A01G490000 chr3B 89.249 679 60 7 2192 2866 785463917 785463248 0.000000e+00 837
13 TraesCS3A01G490000 chr3B 90.148 609 38 13 657 1251 785470225 785469625 0.000000e+00 773
14 TraesCS3A01G490000 chr3B 87.260 573 65 6 4680 5248 785466739 785466171 0.000000e+00 647
15 TraesCS3A01G490000 chr3B 87.582 459 45 4 4245 4695 785467212 785466758 6.020000e-144 521
16 TraesCS3A01G490000 chr3B 91.005 378 30 3 1 374 785429099 785428722 1.690000e-139 507
17 TraesCS3A01G490000 chr3B 89.655 377 35 3 1 374 785470604 785470229 1.320000e-130 477
18 TraesCS3A01G490000 chr3B 92.744 317 20 2 1881 2197 785464772 785464459 6.200000e-124 455
19 TraesCS3A01G490000 chr3B 89.914 347 34 1 29 374 785358157 785357811 3.730000e-121 446
20 TraesCS3A01G490000 chr3B 82.025 484 75 8 4769 5248 785436696 785436221 8.190000e-108 401
21 TraesCS3A01G490000 chr3B 89.241 316 27 2 1530 1843 785465075 785464765 6.370000e-104 388
22 TraesCS3A01G490000 chr3B 93.839 211 11 2 570 778 785357818 785357608 3.050000e-82 316
23 TraesCS3A01G490000 chr3B 93.204 206 14 0 4043 4248 785356487 785356282 2.370000e-78 303
24 TraesCS3A01G490000 chr3B 86.496 274 26 5 4245 4517 785462214 785461951 1.850000e-74 291
25 TraesCS3A01G490000 chr3B 89.423 208 21 1 2962 3169 785463252 785463046 1.450000e-65 261
26 TraesCS3A01G490000 chr3B 89.216 204 19 3 4564 4765 785458983 785458781 8.720000e-63 252
27 TraesCS3A01G490000 chr3B 92.667 150 10 1 4245 4393 785356249 785356100 1.140000e-51 215
28 TraesCS3A01G490000 chr3B 90.909 154 14 0 2958 3111 785426473 785426320 1.920000e-49 207
29 TraesCS3A01G490000 chr3B 95.146 103 5 0 3927 4029 785356806 785356704 4.210000e-36 163
30 TraesCS3A01G490000 chr6A 96.172 209 6 2 368 575 489613554 489613347 1.810000e-89 340
31 TraesCS3A01G490000 chr5A 95.735 211 9 0 367 577 409034560 409034770 1.810000e-89 340
32 TraesCS3A01G490000 chr4A 95.714 210 9 0 367 576 579102616 579102407 6.510000e-89 339
33 TraesCS3A01G490000 chr2A 95.261 211 10 0 367 577 114283433 114283223 8.420000e-88 335
34 TraesCS3A01G490000 chr2A 95.238 210 10 0 368 577 148072323 148072532 3.030000e-87 333
35 TraesCS3A01G490000 chr7A 94.064 219 11 2 363 580 206503639 206503856 1.090000e-86 331
36 TraesCS3A01G490000 chr1A 93.694 222 12 1 356 577 164594882 164595101 1.090000e-86 331


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G490000 chr3A 717622310 717627557 5247 True 9692.000000 9692 100.000000 1 5248 1 chr3A.!!$R2 5247
1 TraesCS3A01G490000 chr3A 717658167 717658699 532 True 388.000000 388 79.963000 3497 4031 1 chr3A.!!$R3 534
2 TraesCS3A01G490000 chr3A 717676533 717677070 537 True 385.000000 385 79.779000 3493 4031 1 chr3A.!!$R4 538
3 TraesCS3A01G490000 chr3B 785424524 785429099 4575 True 1096.800000 2850 89.126400 1 5247 5 chr3B.!!$R3 5246
4 TraesCS3A01G490000 chr3B 785458781 785470604 11823 True 686.615385 2117 89.260000 1 5248 13 chr3B.!!$R4 5247
5 TraesCS3A01G490000 chr3B 785356100 785358157 2057 True 393.000000 915 92.208667 29 4393 6 chr3B.!!$R2 4364

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 421 0.103755 GGGAACTTATCGGTCGACCC 59.896 60.0 28.52 11.63 0.00 4.46 F
1014 1024 0.108585 AACACATGTTCCTCGCAGGT 59.891 50.0 0.00 0.00 36.53 4.00 F
1978 2019 0.035630 AGCCTGACAAGATCACCAGC 60.036 55.0 0.00 0.00 32.37 4.85 F
2406 2460 0.541863 GTGACGGTGATGGGAAGGAT 59.458 55.0 0.00 0.00 0.00 3.24 F
3820 3883 0.741221 GATGTCGCAGGGAAGGTGTC 60.741 60.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1311 0.105039 GCCTAGATCACCGAACCCAG 59.895 60.0 0.00 0.00 0.00 4.45 R
2938 2992 0.113776 TGGTCCCTGTACCTCGAAGT 59.886 55.0 0.00 0.00 40.44 3.01 R
3162 3220 0.833287 ACAGGAGCACGCCTATGAAT 59.167 50.0 0.00 0.00 36.22 2.57 R
3846 3909 0.881118 AGCTTTGGCATGTTGTACGG 59.119 50.0 0.00 0.00 41.70 4.02 R
4765 5115 0.179034 GGAGCCTATGCAGTTCCAGG 60.179 60.0 2.91 0.61 41.13 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.607293 AGTCATGTAGAGCAGACACAAA 57.393 40.909 0.00 0.00 33.56 2.83
24 25 4.752101 AGTCATGTAGAGCAGACACAAAAC 59.248 41.667 0.00 0.00 33.56 2.43
87 88 2.434185 GCCGCACGAGTGAATGGA 60.434 61.111 7.50 0.00 0.00 3.41
108 109 5.811613 TGGATCAAGTGTTTTCAAAGCAAAG 59.188 36.000 0.00 0.00 0.00 2.77
218 219 8.755028 TCACTAAAGCCATAGTACATAAACTCA 58.245 33.333 0.00 0.00 34.40 3.41
374 379 7.708322 CCCACACACTGTAGCATCATATATATC 59.292 40.741 0.00 0.00 0.00 1.63
375 380 8.253113 CCACACACTGTAGCATCATATATATCA 58.747 37.037 0.00 0.00 0.00 2.15
376 381 9.643693 CACACACTGTAGCATCATATATATCAA 57.356 33.333 0.00 0.00 0.00 2.57
383 388 9.617523 TGTAGCATCATATATATCAATGTTGGG 57.382 33.333 12.82 0.00 0.00 4.12
384 389 9.060347 GTAGCATCATATATATCAATGTTGGGG 57.940 37.037 12.82 0.00 0.00 4.96
385 390 7.875311 AGCATCATATATATCAATGTTGGGGA 58.125 34.615 12.82 0.00 0.00 4.81
386 391 8.508601 AGCATCATATATATCAATGTTGGGGAT 58.491 33.333 12.82 0.00 0.00 3.85
387 392 9.797642 GCATCATATATATCAATGTTGGGGATA 57.202 33.333 12.82 0.00 0.00 2.59
391 396 8.939929 CATATATATCAATGTTGGGGATATCGC 58.060 37.037 11.21 11.21 36.12 4.58
392 397 3.795688 ATCAATGTTGGGGATATCGCT 57.204 42.857 18.21 0.00 0.00 4.93
393 398 3.576078 TCAATGTTGGGGATATCGCTT 57.424 42.857 18.21 2.96 0.00 4.68
394 399 4.698201 TCAATGTTGGGGATATCGCTTA 57.302 40.909 18.21 6.48 0.00 3.09
395 400 5.241403 TCAATGTTGGGGATATCGCTTAT 57.759 39.130 18.21 6.34 0.00 1.73
396 401 5.245531 TCAATGTTGGGGATATCGCTTATC 58.754 41.667 18.21 8.56 36.70 1.75
397 402 3.313012 TGTTGGGGATATCGCTTATCG 57.687 47.619 18.21 0.00 38.08 2.92
398 403 2.028476 TGTTGGGGATATCGCTTATCGG 60.028 50.000 18.21 0.00 38.08 4.18
399 404 1.191535 TGGGGATATCGCTTATCGGG 58.808 55.000 18.21 0.00 38.08 5.14
400 405 1.272816 TGGGGATATCGCTTATCGGGA 60.273 52.381 18.21 0.00 38.08 5.14
401 406 1.829222 GGGGATATCGCTTATCGGGAA 59.171 52.381 18.21 0.00 38.08 3.97
402 407 2.418334 GGGGATATCGCTTATCGGGAAC 60.418 54.545 18.21 0.00 38.08 3.62
403 408 2.496470 GGGATATCGCTTATCGGGAACT 59.504 50.000 12.31 0.00 38.08 3.01
404 409 3.056035 GGGATATCGCTTATCGGGAACTT 60.056 47.826 12.31 0.00 38.08 2.66
405 410 4.159135 GGGATATCGCTTATCGGGAACTTA 59.841 45.833 12.31 0.00 38.08 2.24
406 411 5.163437 GGGATATCGCTTATCGGGAACTTAT 60.163 44.000 12.31 0.00 38.08 1.73
407 412 5.978322 GGATATCGCTTATCGGGAACTTATC 59.022 44.000 0.00 0.00 38.08 1.75
408 413 3.278367 TCGCTTATCGGGAACTTATCG 57.722 47.619 0.00 0.00 39.05 2.92
409 414 2.030540 TCGCTTATCGGGAACTTATCGG 60.031 50.000 0.00 0.00 39.05 4.18
410 415 2.288030 CGCTTATCGGGAACTTATCGGT 60.288 50.000 0.00 0.00 33.78 4.69
411 416 3.315418 GCTTATCGGGAACTTATCGGTC 58.685 50.000 0.00 0.00 0.00 4.79
412 417 3.562505 CTTATCGGGAACTTATCGGTCG 58.437 50.000 0.00 0.00 0.00 4.79
413 418 1.683943 ATCGGGAACTTATCGGTCGA 58.316 50.000 0.00 0.00 32.91 4.20
414 419 0.734889 TCGGGAACTTATCGGTCGAC 59.265 55.000 7.13 7.13 0.00 4.20
415 420 0.248784 CGGGAACTTATCGGTCGACC 60.249 60.000 25.28 25.28 0.00 4.79
416 421 0.103755 GGGAACTTATCGGTCGACCC 59.896 60.000 28.52 11.63 0.00 4.46
417 422 0.819582 GGAACTTATCGGTCGACCCA 59.180 55.000 28.52 17.72 0.00 4.51
418 423 1.411612 GGAACTTATCGGTCGACCCAT 59.588 52.381 28.52 23.64 0.00 4.00
419 424 2.470821 GAACTTATCGGTCGACCCATG 58.529 52.381 28.52 15.05 0.00 3.66
420 425 1.771565 ACTTATCGGTCGACCCATGA 58.228 50.000 28.52 19.93 0.00 3.07
421 426 2.317040 ACTTATCGGTCGACCCATGAT 58.683 47.619 28.52 24.74 0.00 2.45
422 427 3.493334 ACTTATCGGTCGACCCATGATA 58.507 45.455 28.52 23.76 0.00 2.15
423 428 3.893200 ACTTATCGGTCGACCCATGATAA 59.107 43.478 27.51 27.51 32.37 1.75
424 429 4.486090 CTTATCGGTCGACCCATGATAAG 58.514 47.826 32.99 32.99 40.91 1.73
425 430 1.037493 TCGGTCGACCCATGATAAGG 58.963 55.000 28.52 11.29 0.00 2.69
435 440 3.686016 CCCATGATAAGGGGTAAATCGG 58.314 50.000 0.00 0.00 42.90 4.18
436 441 3.081804 CCATGATAAGGGGTAAATCGGC 58.918 50.000 0.00 0.00 0.00 5.54
437 442 3.244911 CCATGATAAGGGGTAAATCGGCT 60.245 47.826 0.00 0.00 0.00 5.52
438 443 4.019681 CCATGATAAGGGGTAAATCGGCTA 60.020 45.833 0.00 0.00 0.00 3.93
439 444 4.884668 TGATAAGGGGTAAATCGGCTAG 57.115 45.455 0.00 0.00 0.00 3.42
440 445 4.228824 TGATAAGGGGTAAATCGGCTAGT 58.771 43.478 0.00 0.00 0.00 2.57
441 446 4.657039 TGATAAGGGGTAAATCGGCTAGTT 59.343 41.667 0.00 0.00 0.00 2.24
442 447 5.131475 TGATAAGGGGTAAATCGGCTAGTTT 59.869 40.000 0.00 0.00 0.00 2.66
443 448 6.327104 TGATAAGGGGTAAATCGGCTAGTTTA 59.673 38.462 0.00 0.00 0.00 2.01
444 449 5.641789 AAGGGGTAAATCGGCTAGTTTAT 57.358 39.130 0.00 0.00 0.00 1.40
445 450 5.224821 AGGGGTAAATCGGCTAGTTTATC 57.775 43.478 0.00 0.00 0.00 1.75
446 451 3.992427 GGGGTAAATCGGCTAGTTTATCG 59.008 47.826 0.00 0.00 0.00 2.92
447 452 3.992427 GGGTAAATCGGCTAGTTTATCGG 59.008 47.826 0.00 0.00 0.00 4.18
448 453 3.431233 GGTAAATCGGCTAGTTTATCGGC 59.569 47.826 0.00 0.00 0.00 5.54
449 454 2.902705 AATCGGCTAGTTTATCGGCA 57.097 45.000 0.00 0.00 0.00 5.69
450 455 3.402628 AATCGGCTAGTTTATCGGCAT 57.597 42.857 0.00 0.00 0.00 4.40
451 456 4.530710 AATCGGCTAGTTTATCGGCATA 57.469 40.909 0.00 0.00 0.00 3.14
452 457 4.737855 ATCGGCTAGTTTATCGGCATAT 57.262 40.909 0.00 0.00 0.00 1.78
453 458 4.106029 TCGGCTAGTTTATCGGCATATC 57.894 45.455 0.00 0.00 0.00 1.63
454 459 2.852413 CGGCTAGTTTATCGGCATATCG 59.148 50.000 0.00 0.00 0.00 2.92
455 460 3.187700 GGCTAGTTTATCGGCATATCGG 58.812 50.000 0.00 0.00 0.00 4.18
456 461 3.368116 GGCTAGTTTATCGGCATATCGGT 60.368 47.826 0.00 0.00 0.00 4.69
457 462 3.858238 GCTAGTTTATCGGCATATCGGTC 59.142 47.826 0.00 0.00 0.00 4.79
458 463 2.942710 AGTTTATCGGCATATCGGTCG 58.057 47.619 0.00 0.00 37.19 4.79
464 469 3.861276 TCGGCATATCGGTCGATTTAT 57.139 42.857 11.20 0.00 40.41 1.40
465 470 3.766151 TCGGCATATCGGTCGATTTATC 58.234 45.455 11.20 0.31 40.41 1.75
488 493 4.795970 CCATATCGGCTAATTTATCGGC 57.204 45.455 0.00 0.00 0.00 5.54
489 494 3.560068 CCATATCGGCTAATTTATCGGCC 59.440 47.826 0.00 0.00 41.02 6.13
496 501 5.813080 GGCTAATTTATCGGCCGATTTAT 57.187 39.130 42.74 30.95 36.17 1.40
497 502 5.807344 GGCTAATTTATCGGCCGATTTATC 58.193 41.667 42.74 28.08 36.17 1.75
498 503 5.585047 GGCTAATTTATCGGCCGATTTATCT 59.415 40.000 42.74 25.40 36.17 1.98
499 504 6.093633 GGCTAATTTATCGGCCGATTTATCTT 59.906 38.462 42.74 28.16 36.17 2.40
500 505 7.279313 GGCTAATTTATCGGCCGATTTATCTTA 59.721 37.037 42.74 27.84 36.17 2.10
501 506 8.827677 GCTAATTTATCGGCCGATTTATCTTAT 58.172 33.333 42.74 21.01 36.17 1.73
503 508 6.880822 TTTATCGGCCGATTTATCTTATCG 57.119 37.500 42.74 4.23 43.32 2.92
512 517 6.919687 CGATTTATCTTATCGGTCTGACAG 57.080 41.667 10.38 5.82 40.78 3.51
513 518 5.343593 CGATTTATCTTATCGGTCTGACAGC 59.656 44.000 10.38 0.00 40.78 4.40
515 520 0.738975 TCTTATCGGTCTGACAGCGG 59.261 55.000 10.38 0.00 46.42 5.52
516 521 0.456221 CTTATCGGTCTGACAGCGGT 59.544 55.000 10.38 3.88 46.42 5.68
517 522 1.674441 CTTATCGGTCTGACAGCGGTA 59.326 52.381 10.38 2.88 46.42 4.02
518 523 1.753930 TATCGGTCTGACAGCGGTAA 58.246 50.000 10.38 0.00 46.42 2.85
519 524 0.456221 ATCGGTCTGACAGCGGTAAG 59.544 55.000 10.38 0.00 46.42 2.34
520 525 2.209064 TCGGTCTGACAGCGGTAAGC 62.209 60.000 10.38 0.00 46.42 3.09
553 558 4.761910 CGATTTATCGGCATATCGGAAG 57.238 45.455 4.25 0.00 45.93 3.46
554 559 4.421058 CGATTTATCGGCATATCGGAAGA 58.579 43.478 4.25 0.00 45.93 2.87
569 574 5.914898 TCGGAAGATATCTTGAACAGTGA 57.085 39.130 22.61 6.70 36.11 3.41
570 575 6.471233 TCGGAAGATATCTTGAACAGTGAT 57.529 37.500 22.61 0.00 36.11 3.06
571 576 7.582667 TCGGAAGATATCTTGAACAGTGATA 57.417 36.000 22.61 0.00 36.11 2.15
572 577 8.183104 TCGGAAGATATCTTGAACAGTGATAT 57.817 34.615 22.61 0.00 36.11 1.63
573 578 9.297037 TCGGAAGATATCTTGAACAGTGATATA 57.703 33.333 22.61 0.00 36.11 0.86
609 614 6.969366 TGTATCAACATCAACAACTTTCTGG 58.031 36.000 0.00 0.00 0.00 3.86
668 675 6.557711 CGTTCAAGCTTACAATCACGTTTTTG 60.558 38.462 0.00 5.83 0.00 2.44
696 703 8.506437 GTCAAGGAATTATTATGATCGCATCAA 58.494 33.333 3.47 0.00 43.50 2.57
712 719 4.563061 GCATCAAGTTTCAGGCTTTTCAT 58.437 39.130 0.00 0.00 0.00 2.57
740 747 7.369551 AGGAATTAATTACTCCGATGTGGTA 57.630 36.000 7.14 0.00 39.52 3.25
848 855 1.226323 CCTCTCGCCGTTACACTCG 60.226 63.158 0.00 0.00 0.00 4.18
884 891 1.826487 GTCTCGCTCCTCCTCCTCC 60.826 68.421 0.00 0.00 0.00 4.30
885 892 2.004120 TCTCGCTCCTCCTCCTCCT 61.004 63.158 0.00 0.00 0.00 3.69
886 893 1.528309 CTCGCTCCTCCTCCTCCTC 60.528 68.421 0.00 0.00 0.00 3.71
887 894 2.277072 CGCTCCTCCTCCTCCTCA 59.723 66.667 0.00 0.00 0.00 3.86
924 931 1.296392 CCACGCTCCCACAGATTCA 59.704 57.895 0.00 0.00 0.00 2.57
950 957 2.055042 CACCACCTCTCCTCCTCCG 61.055 68.421 0.00 0.00 0.00 4.63
1013 1023 0.798776 GAACACATGTTCCTCGCAGG 59.201 55.000 12.83 0.00 46.42 4.85
1014 1024 0.108585 AACACATGTTCCTCGCAGGT 59.891 50.000 0.00 0.00 36.53 4.00
1020 1030 1.137825 GTTCCTCGCAGGTCTCTCG 59.862 63.158 2.68 0.00 36.53 4.04
1041 1051 1.401552 TCGTTAACGATACTGTCCCGG 59.598 52.381 26.00 0.00 44.22 5.73
1043 1053 0.461135 TTAACGATACTGTCCCGGCC 59.539 55.000 0.00 0.00 0.00 6.13
1046 1056 4.603946 GATACTGTCCCGGCCGGC 62.604 72.222 39.46 26.31 0.00 6.13
1065 1075 3.082055 GGGTTCTCCCGTCCCCTC 61.082 72.222 0.00 0.00 44.74 4.30
1066 1076 3.082055 GGTTCTCCCGTCCCCTCC 61.082 72.222 0.00 0.00 0.00 4.30
1067 1077 3.082055 GTTCTCCCGTCCCCTCCC 61.082 72.222 0.00 0.00 0.00 4.30
1068 1078 3.281787 TTCTCCCGTCCCCTCCCT 61.282 66.667 0.00 0.00 0.00 4.20
1069 1079 3.312989 TTCTCCCGTCCCCTCCCTC 62.313 68.421 0.00 0.00 0.00 4.30
1070 1080 3.756783 CTCCCGTCCCCTCCCTCT 61.757 72.222 0.00 0.00 0.00 3.69
1071 1081 3.742248 CTCCCGTCCCCTCCCTCTC 62.742 73.684 0.00 0.00 0.00 3.20
1072 1082 3.756783 CCCGTCCCCTCCCTCTCT 61.757 72.222 0.00 0.00 0.00 3.10
1073 1083 2.364961 CCGTCCCCTCCCTCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
1103 1129 1.710996 TTTGTCTTTGGCGGAGGGGA 61.711 55.000 0.00 0.00 0.00 4.81
1106 1132 2.830370 CTTTGGCGGAGGGGATGC 60.830 66.667 0.00 0.00 0.00 3.91
1129 1155 3.492311 GATCTGCGGCGTCCTCCTC 62.492 68.421 9.37 0.00 0.00 3.71
1130 1156 4.742649 TCTGCGGCGTCCTCCTCT 62.743 66.667 9.37 0.00 0.00 3.69
1136 1163 1.651240 CGGCGTCCTCCTCTTCGTAA 61.651 60.000 0.00 0.00 0.00 3.18
1146 1173 1.927174 CCTCTTCGTAATCGCTGGTTG 59.073 52.381 0.00 0.00 36.96 3.77
1175 1209 1.134551 TGGCTTTTGGTTGGTTCTTGC 60.135 47.619 0.00 0.00 0.00 4.01
1183 1217 0.877743 GTTGGTTCTTGCTGCTCTCC 59.122 55.000 0.00 0.00 0.00 3.71
1184 1218 0.603707 TTGGTTCTTGCTGCTCTCCG 60.604 55.000 0.00 0.00 0.00 4.63
1187 1221 1.230324 GTTCTTGCTGCTCTCCGTTT 58.770 50.000 0.00 0.00 0.00 3.60
1188 1222 1.604278 GTTCTTGCTGCTCTCCGTTTT 59.396 47.619 0.00 0.00 0.00 2.43
1189 1223 1.229428 TCTTGCTGCTCTCCGTTTTG 58.771 50.000 0.00 0.00 0.00 2.44
1191 1225 1.334869 CTTGCTGCTCTCCGTTTTGTT 59.665 47.619 0.00 0.00 0.00 2.83
1192 1226 0.944386 TGCTGCTCTCCGTTTTGTTC 59.056 50.000 0.00 0.00 0.00 3.18
1194 1228 1.604278 GCTGCTCTCCGTTTTGTTCTT 59.396 47.619 0.00 0.00 0.00 2.52
1199 1235 3.813724 GCTCTCCGTTTTGTTCTTTAGGT 59.186 43.478 0.00 0.00 0.00 3.08
1251 1287 3.770666 CAGCTTGCTTTGATCCAAGATG 58.229 45.455 10.62 11.13 45.28 2.90
1270 1306 9.903682 CCAAGATGGTGCTATTTTTAATATCTG 57.096 33.333 0.00 0.00 31.35 2.90
1271 1307 9.903682 CAAGATGGTGCTATTTTTAATATCTGG 57.096 33.333 0.00 0.00 0.00 3.86
1272 1308 9.866655 AAGATGGTGCTATTTTTAATATCTGGA 57.133 29.630 0.00 0.00 0.00 3.86
1276 1312 9.866655 TGGTGCTATTTTTAATATCTGGATTCT 57.133 29.630 0.00 0.00 0.00 2.40
1338 1374 2.674220 CCCACCTCTTCTCCCAGCC 61.674 68.421 0.00 0.00 0.00 4.85
1403 1439 4.016444 TGCAAGTTCTTTCTTGTCAGGTT 58.984 39.130 7.98 0.00 44.41 3.50
1437 1475 2.158254 CACATGTGTTCATCTCGGTGTG 59.842 50.000 18.03 0.00 31.15 3.82
1442 1480 3.498018 TGTGTTCATCTCGGTGTGATTTG 59.502 43.478 0.00 0.00 0.00 2.32
1453 1491 4.582656 TCGGTGTGATTTGTTTCCTTCAAT 59.417 37.500 0.00 0.00 0.00 2.57
1467 1505 5.890424 TCCTTCAATTTTTATCGTGGTCC 57.110 39.130 0.00 0.00 0.00 4.46
1667 1708 6.265196 TGCTATTTCAATCCTTCAACTGTGTT 59.735 34.615 0.00 0.00 0.00 3.32
1779 1820 4.656112 GGAAGGATCAAGGATGGAAGAGTA 59.344 45.833 0.00 0.00 0.00 2.59
1815 1856 2.128507 GGGAGGACCTAGCACGAGG 61.129 68.421 0.00 0.00 42.89 4.63
1872 1913 2.183679 GGAGATCCTCACTGTGGTTCT 58.816 52.381 8.11 9.54 36.62 3.01
1877 1918 1.127567 CCTCACTGTGGTTCTGGGGA 61.128 60.000 8.11 0.00 0.00 4.81
1882 1923 1.499007 ACTGTGGTTCTGGGGATTTGT 59.501 47.619 0.00 0.00 0.00 2.83
1978 2019 0.035630 AGCCTGACAAGATCACCAGC 60.036 55.000 0.00 0.00 32.37 4.85
2029 2070 2.202878 TCGTGCCATCGCCTTAGC 60.203 61.111 0.00 0.00 0.00 3.09
2189 2236 9.135843 GTTTTTCCTATTATTGTTGTTAGTGGC 57.864 33.333 0.00 0.00 0.00 5.01
2204 2251 4.579127 GGCGAACCATTAGCCCAT 57.421 55.556 1.57 0.00 44.80 4.00
2216 2263 2.457813 TAGCCCATGGAAATGTGCAT 57.542 45.000 15.22 0.00 35.97 3.96
2217 2264 2.457813 AGCCCATGGAAATGTGCATA 57.542 45.000 15.22 0.00 33.38 3.14
2236 2283 5.118990 GCATATTGCTGGAGTAGTTCTTCA 58.881 41.667 0.00 0.00 40.96 3.02
2246 2293 7.482169 TGGAGTAGTTCTTCAGATTGTGTAT 57.518 36.000 0.00 0.00 0.00 2.29
2281 2328 3.006940 TGCATACGGACTTTCATTGGAC 58.993 45.455 0.00 0.00 0.00 4.02
2331 2385 1.858910 TGGCAGGGGAAATATGATGGT 59.141 47.619 0.00 0.00 0.00 3.55
2339 2393 6.379703 CAGGGGAAATATGATGGTTGTGTAAA 59.620 38.462 0.00 0.00 0.00 2.01
2341 2395 7.069826 AGGGGAAATATGATGGTTGTGTAAATG 59.930 37.037 0.00 0.00 0.00 2.32
2370 2424 1.620739 GGAGCTGGATCACTGAGGCA 61.621 60.000 0.00 0.00 0.00 4.75
2379 2433 1.561643 TCACTGAGGCAGTTAGGGAG 58.438 55.000 0.00 0.00 42.59 4.30
2400 2454 4.109675 GGGGGTGACGGTGATGGG 62.110 72.222 0.00 0.00 0.00 4.00
2401 2455 3.006728 GGGGTGACGGTGATGGGA 61.007 66.667 0.00 0.00 0.00 4.37
2406 2460 0.541863 GTGACGGTGATGGGAAGGAT 59.458 55.000 0.00 0.00 0.00 3.24
2412 2466 2.113986 GATGGGAAGGATGGGCGG 59.886 66.667 0.00 0.00 0.00 6.13
2451 2505 3.446570 CGGTAGACGGAAGGGCGT 61.447 66.667 0.00 0.00 39.42 5.68
2465 2519 1.076485 GGCGTGAGGGGGTAGTAGA 60.076 63.158 0.00 0.00 0.00 2.59
2479 2533 2.274920 AGTAGAGTTTTAGCGCCGAC 57.725 50.000 2.29 0.00 0.00 4.79
2495 2549 2.418976 GCCGACAGTAAGAAAATGGACC 59.581 50.000 0.00 0.00 0.00 4.46
2499 2553 2.289195 ACAGTAAGAAAATGGACCGCGA 60.289 45.455 8.23 0.00 0.00 5.87
2509 2563 2.892425 GACCGCGAAGATGGGCTG 60.892 66.667 8.23 0.00 29.35 4.85
2511 2565 4.161295 CCGCGAAGATGGGCTGGA 62.161 66.667 8.23 0.00 0.00 3.86
2518 2572 1.003580 GAAGATGGGCTGGAGAACACA 59.996 52.381 0.00 0.00 0.00 3.72
2523 2577 1.003580 TGGGCTGGAGAACACAATCTC 59.996 52.381 0.00 0.00 44.18 2.75
2527 2581 2.740981 GCTGGAGAACACAATCTCACAG 59.259 50.000 13.68 13.68 46.24 3.66
2530 2584 3.643320 TGGAGAACACAATCTCACAGTCT 59.357 43.478 6.64 0.00 46.24 3.24
2531 2585 4.241681 GGAGAACACAATCTCACAGTCTC 58.758 47.826 6.64 0.00 46.24 3.36
2532 2586 4.262207 GGAGAACACAATCTCACAGTCTCA 60.262 45.833 6.64 0.00 46.24 3.27
2534 2588 4.343526 AGAACACAATCTCACAGTCTCAGT 59.656 41.667 0.00 0.00 0.00 3.41
2535 2589 3.987547 ACACAATCTCACAGTCTCAGTG 58.012 45.455 0.00 0.00 38.32 3.66
2543 2597 3.732212 TCACAGTCTCAGTGTCCAAATG 58.268 45.455 0.00 0.00 38.16 2.32
2562 2616 4.397348 GTGAGAAACACCGGGCAT 57.603 55.556 6.32 0.00 43.05 4.40
2577 2631 4.059511 CCGGGCATGAATGTTAATACGTA 58.940 43.478 0.00 0.00 0.00 3.57
2609 2663 5.494724 AGTGAGACATGTGCTAATGAACAT 58.505 37.500 1.15 0.00 43.00 2.71
2613 2667 7.907045 GTGAGACATGTGCTAATGAACATAAAG 59.093 37.037 1.15 0.00 40.36 1.85
2622 2676 8.108782 GTGCTAATGAACATAAAGAAGTACGTC 58.891 37.037 0.00 0.00 0.00 4.34
2679 2733 6.515035 GCCTTGCTGTTGTATTTGTCTTTACT 60.515 38.462 0.00 0.00 0.00 2.24
2682 2736 7.801716 TGCTGTTGTATTTGTCTTTACTCTT 57.198 32.000 0.00 0.00 0.00 2.85
2683 2737 8.220755 TGCTGTTGTATTTGTCTTTACTCTTT 57.779 30.769 0.00 0.00 0.00 2.52
2685 2739 9.595357 GCTGTTGTATTTGTCTTTACTCTTTAC 57.405 33.333 0.00 0.00 0.00 2.01
2697 2751 9.485206 GTCTTTACTCTTTACACAATAAGGTCA 57.515 33.333 0.00 0.00 0.00 4.02
2863 2917 8.455903 ACATGGTTATAGATGGTCAATTGAAG 57.544 34.615 10.35 0.00 0.00 3.02
2864 2918 8.055181 ACATGGTTATAGATGGTCAATTGAAGT 58.945 33.333 10.35 0.00 0.00 3.01
2865 2919 8.906867 CATGGTTATAGATGGTCAATTGAAGTT 58.093 33.333 10.35 0.00 0.00 2.66
2866 2920 8.877864 TGGTTATAGATGGTCAATTGAAGTTT 57.122 30.769 10.35 0.00 0.00 2.66
2867 2921 9.308000 TGGTTATAGATGGTCAATTGAAGTTTT 57.692 29.630 10.35 0.00 0.00 2.43
2892 2946 8.909708 TTTTGCGAAAATTACCAGATCTATTG 57.090 30.769 0.00 0.00 0.00 1.90
2893 2947 7.624360 TTGCGAAAATTACCAGATCTATTGT 57.376 32.000 0.00 0.00 0.00 2.71
2894 2948 8.725405 TTGCGAAAATTACCAGATCTATTGTA 57.275 30.769 0.00 0.00 0.00 2.41
2895 2949 8.725405 TGCGAAAATTACCAGATCTATTGTAA 57.275 30.769 11.75 11.75 0.00 2.41
2896 2950 9.168451 TGCGAAAATTACCAGATCTATTGTAAA 57.832 29.630 12.82 0.00 0.00 2.01
2897 2951 9.651718 GCGAAAATTACCAGATCTATTGTAAAG 57.348 33.333 12.82 6.59 0.00 1.85
2904 2958 9.832445 TTACCAGATCTATTGTAAAGATTCACC 57.168 33.333 0.00 0.00 33.82 4.02
2905 2959 6.986817 ACCAGATCTATTGTAAAGATTCACCG 59.013 38.462 0.00 0.00 33.82 4.94
2906 2960 6.425114 CCAGATCTATTGTAAAGATTCACCGG 59.575 42.308 0.00 0.00 33.82 5.28
2907 2961 7.210174 CAGATCTATTGTAAAGATTCACCGGA 58.790 38.462 9.46 0.00 33.82 5.14
2908 2962 7.710907 CAGATCTATTGTAAAGATTCACCGGAA 59.289 37.037 9.46 0.00 33.82 4.30
2909 2963 7.711339 AGATCTATTGTAAAGATTCACCGGAAC 59.289 37.037 9.46 0.00 35.46 3.62
2910 2964 6.942976 TCTATTGTAAAGATTCACCGGAACT 58.057 36.000 9.46 0.00 35.46 3.01
2911 2965 8.070034 TCTATTGTAAAGATTCACCGGAACTA 57.930 34.615 9.46 0.00 35.46 2.24
2912 2966 6.980051 ATTGTAAAGATTCACCGGAACTAC 57.020 37.500 9.46 0.00 35.46 2.73
2913 2967 5.471556 TGTAAAGATTCACCGGAACTACA 57.528 39.130 9.46 1.25 35.46 2.74
2914 2968 5.856156 TGTAAAGATTCACCGGAACTACAA 58.144 37.500 9.46 0.00 35.46 2.41
2915 2969 6.289834 TGTAAAGATTCACCGGAACTACAAA 58.710 36.000 9.46 0.00 35.46 2.83
2916 2970 6.766944 TGTAAAGATTCACCGGAACTACAAAA 59.233 34.615 9.46 0.00 35.46 2.44
2917 2971 5.684550 AAGATTCACCGGAACTACAAAAC 57.315 39.130 9.46 0.00 35.46 2.43
2918 2972 4.710324 AGATTCACCGGAACTACAAAACA 58.290 39.130 9.46 0.00 35.46 2.83
2919 2973 4.514066 AGATTCACCGGAACTACAAAACAC 59.486 41.667 9.46 0.00 35.46 3.32
2920 2974 2.563702 TCACCGGAACTACAAAACACC 58.436 47.619 9.46 0.00 0.00 4.16
2921 2975 2.171027 TCACCGGAACTACAAAACACCT 59.829 45.455 9.46 0.00 0.00 4.00
2922 2976 2.546789 CACCGGAACTACAAAACACCTC 59.453 50.000 9.46 0.00 0.00 3.85
2923 2977 2.171027 ACCGGAACTACAAAACACCTCA 59.829 45.455 9.46 0.00 0.00 3.86
2924 2978 3.207778 CCGGAACTACAAAACACCTCAA 58.792 45.455 0.00 0.00 0.00 3.02
2925 2979 3.628487 CCGGAACTACAAAACACCTCAAA 59.372 43.478 0.00 0.00 0.00 2.69
2926 2980 4.496840 CCGGAACTACAAAACACCTCAAAC 60.497 45.833 0.00 0.00 0.00 2.93
2927 2981 4.594136 GGAACTACAAAACACCTCAAACG 58.406 43.478 0.00 0.00 0.00 3.60
2928 2982 4.095334 GGAACTACAAAACACCTCAAACGT 59.905 41.667 0.00 0.00 0.00 3.99
2929 2983 4.870221 ACTACAAAACACCTCAAACGTC 57.130 40.909 0.00 0.00 0.00 4.34
2930 2984 4.255301 ACTACAAAACACCTCAAACGTCA 58.745 39.130 0.00 0.00 0.00 4.35
2931 2985 4.879545 ACTACAAAACACCTCAAACGTCAT 59.120 37.500 0.00 0.00 0.00 3.06
2932 2986 6.050432 ACTACAAAACACCTCAAACGTCATA 58.950 36.000 0.00 0.00 0.00 2.15
2933 2987 5.821516 ACAAAACACCTCAAACGTCATAA 57.178 34.783 0.00 0.00 0.00 1.90
2934 2988 6.197364 ACAAAACACCTCAAACGTCATAAA 57.803 33.333 0.00 0.00 0.00 1.40
2935 2989 6.622549 ACAAAACACCTCAAACGTCATAAAA 58.377 32.000 0.00 0.00 0.00 1.52
2936 2990 7.262048 ACAAAACACCTCAAACGTCATAAAAT 58.738 30.769 0.00 0.00 0.00 1.82
2937 2991 7.762159 ACAAAACACCTCAAACGTCATAAAATT 59.238 29.630 0.00 0.00 0.00 1.82
2938 2992 9.239002 CAAAACACCTCAAACGTCATAAAATTA 57.761 29.630 0.00 0.00 0.00 1.40
2939 2993 8.791355 AAACACCTCAAACGTCATAAAATTAC 57.209 30.769 0.00 0.00 0.00 1.89
2940 2994 7.739498 ACACCTCAAACGTCATAAAATTACT 57.261 32.000 0.00 0.00 0.00 2.24
2941 2995 8.161699 ACACCTCAAACGTCATAAAATTACTT 57.838 30.769 0.00 0.00 0.00 2.24
2942 2996 8.287503 ACACCTCAAACGTCATAAAATTACTTC 58.712 33.333 0.00 0.00 0.00 3.01
2943 2997 7.477422 CACCTCAAACGTCATAAAATTACTTCG 59.523 37.037 0.00 0.00 0.00 3.79
2944 2998 7.385752 ACCTCAAACGTCATAAAATTACTTCGA 59.614 33.333 0.00 0.00 0.00 3.71
2945 2999 7.898309 CCTCAAACGTCATAAAATTACTTCGAG 59.102 37.037 0.00 0.00 0.00 4.04
2946 3000 7.735500 TCAAACGTCATAAAATTACTTCGAGG 58.264 34.615 0.00 0.00 0.00 4.63
2947 3001 7.385752 TCAAACGTCATAAAATTACTTCGAGGT 59.614 33.333 5.23 5.23 0.00 3.85
2948 3002 8.649841 CAAACGTCATAAAATTACTTCGAGGTA 58.350 33.333 2.84 2.84 0.00 3.08
2949 3003 7.746526 ACGTCATAAAATTACTTCGAGGTAC 57.253 36.000 6.93 0.00 0.00 3.34
2950 3004 7.315142 ACGTCATAAAATTACTTCGAGGTACA 58.685 34.615 6.93 0.00 0.00 2.90
2951 3005 7.487189 ACGTCATAAAATTACTTCGAGGTACAG 59.513 37.037 6.93 0.00 0.00 2.74
2952 3006 7.043590 CGTCATAAAATTACTTCGAGGTACAGG 60.044 40.741 6.93 0.00 0.00 4.00
2953 3007 7.224167 GTCATAAAATTACTTCGAGGTACAGGG 59.776 40.741 6.93 0.00 0.00 4.45
2954 3008 5.750352 AAAATTACTTCGAGGTACAGGGA 57.250 39.130 6.93 0.00 0.00 4.20
2955 3009 4.732672 AATTACTTCGAGGTACAGGGAC 57.267 45.455 6.93 0.00 0.00 4.46
2956 3010 2.134789 TACTTCGAGGTACAGGGACC 57.865 55.000 2.84 0.00 40.08 4.46
2997 3051 3.044156 TCATGCTCCTCTGGCTTAATCT 58.956 45.455 0.00 0.00 0.00 2.40
3012 3066 7.054124 TGGCTTAATCTGTTTCCTAATAGTGG 58.946 38.462 0.00 0.00 0.00 4.00
3037 3091 2.857483 TGTTGTGAACATGGTACCAGG 58.143 47.619 24.52 24.52 36.25 4.45
3041 3095 1.349688 GTGAACATGGTACCAGGTCCA 59.650 52.381 30.76 23.50 40.22 4.02
3097 3151 5.949952 GGTATTACCAACCATTTCCTCAACT 59.050 40.000 8.03 0.00 38.42 3.16
3098 3152 7.114095 GGTATTACCAACCATTTCCTCAACTA 58.886 38.462 8.03 0.00 38.42 2.24
3106 3160 4.220602 ACCATTTCCTCAACTAACAATGCC 59.779 41.667 0.00 0.00 0.00 4.40
3111 3165 2.290896 CCTCAACTAACAATGCCCCAGA 60.291 50.000 0.00 0.00 0.00 3.86
3112 3166 3.420893 CTCAACTAACAATGCCCCAGAA 58.579 45.455 0.00 0.00 0.00 3.02
3167 3225 8.055279 ACGAGGATGTTACAAATTGAATTCAT 57.945 30.769 9.40 0.00 0.00 2.57
3180 3238 1.869767 GAATTCATAGGCGTGCTCCTG 59.130 52.381 0.00 0.00 37.01 3.86
3204 3262 5.574891 TGCTTTGCTTCTGAACTTTGTAA 57.425 34.783 0.00 0.00 0.00 2.41
3212 3270 6.095377 GCTTCTGAACTTTGTAATGGGATTG 58.905 40.000 0.00 0.00 0.00 2.67
3217 3275 6.074648 TGAACTTTGTAATGGGATTGTTCCT 58.925 36.000 0.00 0.00 42.20 3.36
3226 3284 2.290896 TGGGATTGTTCCTGGTGATGTC 60.291 50.000 0.00 0.00 42.20 3.06
3227 3285 2.025887 GGGATTGTTCCTGGTGATGTCT 60.026 50.000 0.00 0.00 42.20 3.41
3243 3301 1.123655 GTCTTTTGCTTGTGCTTCGC 58.876 50.000 0.00 0.00 40.48 4.70
3266 3324 1.760405 AGGGGTGACAATTTCCCTCT 58.240 50.000 0.00 0.00 46.12 3.69
3268 3326 1.354368 GGGGTGACAATTTCCCTCTGA 59.646 52.381 0.00 0.00 40.88 3.27
3275 3333 5.474876 GTGACAATTTCCCTCTGAGATTTGT 59.525 40.000 6.17 8.03 0.00 2.83
3276 3334 6.015940 GTGACAATTTCCCTCTGAGATTTGTT 60.016 38.462 6.17 0.00 0.00 2.83
3280 3338 5.324832 TTTCCCTCTGAGATTTGTTCCTT 57.675 39.130 6.17 0.00 0.00 3.36
3281 3339 4.559862 TCCCTCTGAGATTTGTTCCTTC 57.440 45.455 6.17 0.00 0.00 3.46
3282 3340 3.264450 TCCCTCTGAGATTTGTTCCTTCC 59.736 47.826 6.17 0.00 0.00 3.46
3311 3369 1.067915 TGTTGCGATCGAGTCATGTCA 60.068 47.619 21.57 0.92 0.00 3.58
3314 3372 3.273919 TGCGATCGAGTCATGTCATAG 57.726 47.619 21.57 0.00 0.00 2.23
3385 3443 1.665679 TGCTTGTAGCTCGCTTATTGC 59.334 47.619 0.00 0.00 42.97 3.56
3388 3446 3.786818 GCTTGTAGCTCGCTTATTGCTTG 60.787 47.826 0.00 0.00 38.45 4.01
3393 3451 1.098050 CTCGCTTATTGCTTGCCCTT 58.902 50.000 0.00 0.00 40.11 3.95
3404 3462 2.426738 TGCTTGCCCTTAATGGAAATCG 59.573 45.455 0.24 0.00 38.35 3.34
3407 3465 3.593442 TGCCCTTAATGGAAATCGGAT 57.407 42.857 0.24 0.00 38.35 4.18
3409 3467 2.029918 GCCCTTAATGGAAATCGGATGC 60.030 50.000 0.24 0.00 38.35 3.91
3410 3468 3.221771 CCCTTAATGGAAATCGGATGCA 58.778 45.455 0.00 0.00 38.35 3.96
3417 3475 1.064060 GGAAATCGGATGCAGAAACCG 59.936 52.381 15.02 15.02 46.71 4.44
3462 3523 7.114529 GCGATGTTAATAGCTAATTGAGTACGT 59.885 37.037 0.00 0.00 32.18 3.57
3463 3524 8.965172 CGATGTTAATAGCTAATTGAGTACGTT 58.035 33.333 0.00 0.00 0.00 3.99
3477 3538 4.876679 TGAGTACGTTGTGTCCATTTTGAA 59.123 37.500 0.00 0.00 0.00 2.69
3486 3547 7.215942 CGTTGTGTCCATTTTGAATTTGTTTTG 59.784 33.333 0.00 0.00 0.00 2.44
3524 3587 7.880195 ACTAGAACAAGGGTTATGCATCATATC 59.120 37.037 0.19 0.00 37.36 1.63
3525 3588 6.604171 AGAACAAGGGTTATGCATCATATCA 58.396 36.000 0.19 0.00 37.36 2.15
3544 3607 9.037737 TCATATCAATAGTACTTTGTTTACCGC 57.962 33.333 0.00 0.00 0.00 5.68
3567 3630 5.827797 GCTGACCCTATCCACAATATTTTGA 59.172 40.000 3.10 0.00 36.64 2.69
3633 3696 5.527026 ATCCCTCAAGACTTTGGAGATTT 57.473 39.130 4.50 0.00 34.97 2.17
3722 3785 0.893270 ATGTAAGCGGCTGCACCAAA 60.893 50.000 21.93 0.93 46.23 3.28
3820 3883 0.741221 GATGTCGCAGGGAAGGTGTC 60.741 60.000 0.00 0.00 0.00 3.67
3878 3941 1.004440 AAAGCTCTGCCACCTCGAC 60.004 57.895 0.00 0.00 0.00 4.20
3893 3958 3.256879 ACCTCGACATAGGATACATGCTG 59.743 47.826 0.00 0.00 39.15 4.41
3898 3963 4.628766 CGACATAGGATACATGCTGATTGG 59.371 45.833 0.00 0.00 41.41 3.16
3954 4019 6.151817 GTGCCAAGACCTCAAATTCTTAGATT 59.848 38.462 0.00 0.00 30.67 2.40
4037 4102 2.203294 GGCCCCCGCGTAAATGAT 60.203 61.111 4.92 0.00 35.02 2.45
4070 4338 0.540923 GCTTCTGGGATGAGTGCTCT 59.459 55.000 0.68 0.00 0.00 4.09
4109 4377 2.187958 TCATGGGAAGAGTTCACGGAT 58.812 47.619 0.00 0.00 35.25 4.18
4123 4391 3.014623 TCACGGATGATGACTACTTCGT 58.985 45.455 0.00 0.00 0.00 3.85
4164 4432 1.694150 CCATATGGGACCACGATCACT 59.306 52.381 14.52 0.00 40.01 3.41
4167 4435 1.573108 ATGGGACCACGATCACTCTT 58.427 50.000 0.00 0.00 0.00 2.85
4287 4592 7.987458 CCTGCTCCTCTTTATATGTTTCAACTA 59.013 37.037 0.00 0.00 0.00 2.24
4336 4641 6.917477 GTGCTTCTAATTGTCAAATTGTGTGA 59.083 34.615 0.00 0.00 36.65 3.58
4379 4684 7.015226 TGTCTGATTGTTGAGTAAACTTGTG 57.985 36.000 0.00 0.00 39.70 3.33
4398 4709 3.769844 TGTGTGGGTGTAAAAACATGGTT 59.230 39.130 0.00 0.00 0.00 3.67
4454 4765 6.785191 ACTGTTGAGAAAAGTGTTACATGTG 58.215 36.000 9.11 0.00 0.00 3.21
4466 4777 6.560711 AGTGTTACATGTGGTTTTCTGTTTC 58.439 36.000 9.11 0.00 0.00 2.78
4467 4778 6.377146 AGTGTTACATGTGGTTTTCTGTTTCT 59.623 34.615 9.11 0.00 0.00 2.52
4472 4783 5.804979 ACATGTGGTTTTCTGTTTCTTTTCG 59.195 36.000 0.00 0.00 0.00 3.46
4531 4842 6.528537 TGGAAAATTCAATATGTCCCACTG 57.471 37.500 0.00 0.00 0.00 3.66
4546 4857 3.129502 CTGGTGGTCATGCAGGCG 61.130 66.667 0.00 0.00 0.00 5.52
4582 4893 0.324552 TGAATGTGCAGGGGAATGGG 60.325 55.000 0.00 0.00 0.00 4.00
4617 4929 5.991606 AGCTTCGTATGATGCATTAAGCTTA 59.008 36.000 21.13 0.86 45.19 3.09
4683 4995 6.819146 AGCTTAAATAGGTACAGAAACAGCTC 59.181 38.462 0.00 0.00 31.41 4.09
4765 5115 4.319177 AGCAGACTTGATTGAACACCTAC 58.681 43.478 0.00 0.00 0.00 3.18
4806 5156 2.025155 ACGAGCTATGGTAGACTGGTG 58.975 52.381 0.00 0.00 0.00 4.17
4817 5167 1.177256 AGACTGGTGACGTAACGGCT 61.177 55.000 0.00 0.00 35.04 5.52
4833 5184 2.250188 CGGCTACGGCAATTCAAAAAG 58.750 47.619 0.00 0.00 40.87 2.27
4835 5186 3.501950 GGCTACGGCAATTCAAAAAGAG 58.498 45.455 0.00 0.00 40.87 2.85
4849 5200 5.976458 TCAAAAAGAGTCCAACAATTTGCT 58.024 33.333 0.00 0.00 0.00 3.91
4881 5232 5.818136 AATAACGTGACCTGATGAAATGG 57.182 39.130 0.00 0.00 0.00 3.16
4918 5269 2.125106 GTAGCGGGCTGGAAGGTG 60.125 66.667 2.86 0.00 0.00 4.00
4967 5318 9.185192 CGAAAATTATTTTGCTCACTCTTTCTT 57.815 29.630 7.72 0.00 31.94 2.52
4972 5323 5.913137 TTTTGCTCACTCTTTCTTTTCCA 57.087 34.783 0.00 0.00 0.00 3.53
4978 5329 5.745769 GCTCACTCTTTCTTTTCCAAAGTTG 59.254 40.000 0.00 0.00 33.32 3.16
5057 5408 5.592282 TGAATGAACAACTGCTTCCTTTACA 59.408 36.000 0.00 0.00 0.00 2.41
5091 5442 7.364522 GTGAAGCACACTATTTTCAGTATCA 57.635 36.000 6.77 0.00 45.13 2.15
5095 5446 5.755375 AGCACACTATTTTCAGTATCATCGG 59.245 40.000 0.00 0.00 0.00 4.18
5100 5451 7.808381 ACACTATTTTCAGTATCATCGGTATCG 59.192 37.037 0.00 0.00 37.82 2.92
5138 5489 3.900941 AGGTTTGCGTGCAATTTTCTAG 58.099 40.909 8.26 0.00 35.70 2.43
5139 5490 2.986479 GGTTTGCGTGCAATTTTCTAGG 59.014 45.455 8.26 0.00 35.70 3.02
5181 5535 1.740296 GGCGCTAAACTCGAGGCAA 60.740 57.895 18.41 0.00 0.00 4.52
5196 5550 0.323087 GGCAAATAACGGAGGGGTGT 60.323 55.000 0.00 0.00 0.00 4.16
5202 5556 4.847990 AATAACGGAGGGGTGTAATGAA 57.152 40.909 0.00 0.00 0.00 2.57
5205 5559 1.338389 ACGGAGGGGTGTAATGAAACG 60.338 52.381 0.00 0.00 0.00 3.60
5207 5561 2.419574 CGGAGGGGTGTAATGAAACGAT 60.420 50.000 0.00 0.00 0.00 3.73
5241 5595 7.425577 AATTCCAAAGATGCTTGCTAAAAAC 57.574 32.000 0.00 0.00 0.00 2.43
5244 5598 4.687483 CCAAAGATGCTTGCTAAAAACCTG 59.313 41.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.839490 TGGCCCATCATCATTCAAGTTTT 59.161 39.130 0.00 0.00 0.00 2.43
22 23 3.104519 TGGCCCATCATCATTCAAGTT 57.895 42.857 0.00 0.00 0.00 2.66
24 25 3.028850 ACTTGGCCCATCATCATTCAAG 58.971 45.455 0.00 0.00 36.96 3.02
54 55 2.641197 GGCGGCCGAATAATCCAAT 58.359 52.632 33.48 0.00 0.00 3.16
87 88 6.036408 GCTTCTTTGCTTTGAAAACACTTGAT 59.964 34.615 0.00 0.00 0.00 2.57
125 126 3.027974 ACTTCTCTAACTTCACCGTGC 57.972 47.619 0.00 0.00 0.00 5.34
126 127 7.536855 ACTATTACTTCTCTAACTTCACCGTG 58.463 38.462 0.00 0.00 0.00 4.94
253 256 9.424319 AGATATGGCTTACATTAACGTAATCAG 57.576 33.333 0.00 0.00 41.03 2.90
315 320 8.739972 AGATTTGGTAAACAGATTTCATGGTAC 58.260 33.333 0.00 0.00 0.00 3.34
374 379 4.093408 CGATAAGCGATATCCCCAACATTG 59.907 45.833 0.00 0.00 44.57 2.82
375 380 4.253685 CGATAAGCGATATCCCCAACATT 58.746 43.478 0.00 0.00 44.57 2.71
376 381 3.369471 CCGATAAGCGATATCCCCAACAT 60.369 47.826 0.00 0.00 44.57 2.71
377 382 2.028476 CCGATAAGCGATATCCCCAACA 60.028 50.000 0.00 0.00 44.57 3.33
378 383 2.618053 CCGATAAGCGATATCCCCAAC 58.382 52.381 0.00 0.00 44.57 3.77
379 384 1.553248 CCCGATAAGCGATATCCCCAA 59.447 52.381 0.00 0.00 44.57 4.12
380 385 1.191535 CCCGATAAGCGATATCCCCA 58.808 55.000 0.00 0.00 44.57 4.96
381 386 1.481871 TCCCGATAAGCGATATCCCC 58.518 55.000 0.00 0.00 44.57 4.81
382 387 2.496470 AGTTCCCGATAAGCGATATCCC 59.504 50.000 0.00 0.00 44.57 3.85
383 388 3.870633 AGTTCCCGATAAGCGATATCC 57.129 47.619 0.00 0.00 44.57 2.59
384 389 5.681982 CGATAAGTTCCCGATAAGCGATATC 59.318 44.000 0.00 0.00 44.57 1.63
385 390 5.450137 CCGATAAGTTCCCGATAAGCGATAT 60.450 44.000 0.00 0.00 44.57 1.63
386 391 4.142534 CCGATAAGTTCCCGATAAGCGATA 60.143 45.833 0.00 0.00 44.57 2.92
387 392 3.367087 CCGATAAGTTCCCGATAAGCGAT 60.367 47.826 0.00 0.00 44.57 4.58
388 393 2.030540 CCGATAAGTTCCCGATAAGCGA 60.031 50.000 0.00 0.00 44.57 4.93
389 394 2.288030 ACCGATAAGTTCCCGATAAGCG 60.288 50.000 0.00 0.00 40.47 4.68
390 395 3.315418 GACCGATAAGTTCCCGATAAGC 58.685 50.000 0.00 0.00 0.00 3.09
391 396 3.251729 TCGACCGATAAGTTCCCGATAAG 59.748 47.826 0.00 0.00 0.00 1.73
392 397 3.003689 GTCGACCGATAAGTTCCCGATAA 59.996 47.826 3.51 0.00 0.00 1.75
393 398 2.549754 GTCGACCGATAAGTTCCCGATA 59.450 50.000 3.51 0.00 0.00 2.92
394 399 1.336125 GTCGACCGATAAGTTCCCGAT 59.664 52.381 3.51 0.00 0.00 4.18
395 400 0.734889 GTCGACCGATAAGTTCCCGA 59.265 55.000 3.51 0.00 0.00 5.14
396 401 0.248784 GGTCGACCGATAAGTTCCCG 60.249 60.000 20.85 0.00 0.00 5.14
397 402 0.103755 GGGTCGACCGATAAGTTCCC 59.896 60.000 27.68 6.58 36.71 3.97
398 403 0.819582 TGGGTCGACCGATAAGTTCC 59.180 55.000 27.68 11.32 44.64 3.62
399 404 2.100252 TCATGGGTCGACCGATAAGTTC 59.900 50.000 28.81 13.28 44.64 3.01
400 405 2.104967 TCATGGGTCGACCGATAAGTT 58.895 47.619 28.81 7.80 44.64 2.66
401 406 1.771565 TCATGGGTCGACCGATAAGT 58.228 50.000 28.81 8.19 44.64 2.24
402 407 4.486090 CTTATCATGGGTCGACCGATAAG 58.514 47.826 32.99 32.99 44.64 1.73
403 408 3.257375 CCTTATCATGGGTCGACCGATAA 59.743 47.826 28.81 28.02 44.64 1.75
404 409 2.823747 CCTTATCATGGGTCGACCGATA 59.176 50.000 28.81 24.09 44.64 2.92
405 410 1.618837 CCTTATCATGGGTCGACCGAT 59.381 52.381 27.68 26.19 44.64 4.18
406 411 1.037493 CCTTATCATGGGTCGACCGA 58.963 55.000 27.68 25.05 44.64 4.69
407 412 0.033504 CCCTTATCATGGGTCGACCG 59.966 60.000 27.68 14.74 44.64 4.79
408 413 0.396811 CCCCTTATCATGGGTCGACC 59.603 60.000 27.04 27.04 43.09 4.79
415 420 3.081804 GCCGATTTACCCCTTATCATGG 58.918 50.000 0.00 0.00 0.00 3.66
416 421 4.021102 AGCCGATTTACCCCTTATCATG 57.979 45.455 0.00 0.00 0.00 3.07
417 422 4.844655 ACTAGCCGATTTACCCCTTATCAT 59.155 41.667 0.00 0.00 0.00 2.45
418 423 4.228824 ACTAGCCGATTTACCCCTTATCA 58.771 43.478 0.00 0.00 0.00 2.15
419 424 4.886496 ACTAGCCGATTTACCCCTTATC 57.114 45.455 0.00 0.00 0.00 1.75
420 425 5.641789 AAACTAGCCGATTTACCCCTTAT 57.358 39.130 0.00 0.00 0.00 1.73
421 426 6.517194 CGATAAACTAGCCGATTTACCCCTTA 60.517 42.308 0.00 0.00 0.00 2.69
422 427 5.618236 GATAAACTAGCCGATTTACCCCTT 58.382 41.667 0.00 0.00 0.00 3.95
423 428 4.262335 CGATAAACTAGCCGATTTACCCCT 60.262 45.833 0.00 0.00 0.00 4.79
424 429 3.992427 CGATAAACTAGCCGATTTACCCC 59.008 47.826 0.00 0.00 0.00 4.95
425 430 3.992427 CCGATAAACTAGCCGATTTACCC 59.008 47.826 0.00 0.00 0.00 3.69
426 431 3.431233 GCCGATAAACTAGCCGATTTACC 59.569 47.826 0.00 0.00 0.00 2.85
427 432 4.053295 TGCCGATAAACTAGCCGATTTAC 58.947 43.478 0.00 0.00 0.00 2.01
428 433 4.325028 TGCCGATAAACTAGCCGATTTA 57.675 40.909 0.00 0.00 0.00 1.40
429 434 3.188159 TGCCGATAAACTAGCCGATTT 57.812 42.857 0.00 0.00 0.00 2.17
430 435 2.902705 TGCCGATAAACTAGCCGATT 57.097 45.000 0.00 0.00 0.00 3.34
431 436 4.683832 GATATGCCGATAAACTAGCCGAT 58.316 43.478 0.00 0.00 0.00 4.18
432 437 3.427098 CGATATGCCGATAAACTAGCCGA 60.427 47.826 0.00 0.00 0.00 5.54
433 438 2.852413 CGATATGCCGATAAACTAGCCG 59.148 50.000 0.00 0.00 0.00 5.52
434 439 3.187700 CCGATATGCCGATAAACTAGCC 58.812 50.000 0.00 0.00 0.00 3.93
435 440 3.846360 ACCGATATGCCGATAAACTAGC 58.154 45.455 0.00 0.00 0.00 3.42
436 441 4.096311 CGACCGATATGCCGATAAACTAG 58.904 47.826 0.00 0.00 0.00 2.57
437 442 3.752747 TCGACCGATATGCCGATAAACTA 59.247 43.478 0.00 0.00 0.00 2.24
438 443 2.555325 TCGACCGATATGCCGATAAACT 59.445 45.455 0.00 0.00 0.00 2.66
439 444 2.937591 TCGACCGATATGCCGATAAAC 58.062 47.619 0.00 0.00 0.00 2.01
440 445 3.861276 ATCGACCGATATGCCGATAAA 57.139 42.857 2.75 0.00 39.59 1.40
441 446 3.861276 AATCGACCGATATGCCGATAA 57.139 42.857 5.27 0.00 40.35 1.75
442 447 3.861276 AAATCGACCGATATGCCGATA 57.139 42.857 5.27 0.00 40.35 2.92
443 448 2.743636 AAATCGACCGATATGCCGAT 57.256 45.000 5.27 0.00 42.66 4.18
444 449 3.766151 GATAAATCGACCGATATGCCGA 58.234 45.455 5.27 0.00 33.97 5.54
467 472 3.560068 GGCCGATAAATTAGCCGATATGG 59.440 47.826 0.00 0.00 42.50 2.74
468 473 4.795970 GGCCGATAAATTAGCCGATATG 57.204 45.455 0.00 0.00 35.30 1.78
474 479 5.585047 AGATAAATCGGCCGATAAATTAGCC 59.415 40.000 39.08 25.31 42.18 3.93
475 480 6.663944 AGATAAATCGGCCGATAAATTAGC 57.336 37.500 39.08 32.03 33.97 3.09
477 482 9.027129 CGATAAGATAAATCGGCCGATAAATTA 57.973 33.333 39.08 31.17 41.91 1.40
478 483 7.906160 CGATAAGATAAATCGGCCGATAAATT 58.094 34.615 39.08 30.15 41.91 1.82
479 484 7.464830 CGATAAGATAAATCGGCCGATAAAT 57.535 36.000 39.08 31.97 41.91 1.40
480 485 6.880822 CGATAAGATAAATCGGCCGATAAA 57.119 37.500 39.08 29.07 41.91 1.40
489 494 5.343593 GCTGTCAGACCGATAAGATAAATCG 59.656 44.000 3.32 0.00 44.51 3.34
490 495 5.343593 CGCTGTCAGACCGATAAGATAAATC 59.656 44.000 3.32 0.00 0.00 2.17
491 496 5.223382 CGCTGTCAGACCGATAAGATAAAT 58.777 41.667 3.32 0.00 0.00 1.40
492 497 4.499188 CCGCTGTCAGACCGATAAGATAAA 60.499 45.833 3.32 0.00 0.00 1.40
493 498 3.004419 CCGCTGTCAGACCGATAAGATAA 59.996 47.826 3.32 0.00 0.00 1.75
494 499 2.552743 CCGCTGTCAGACCGATAAGATA 59.447 50.000 3.32 0.00 0.00 1.98
495 500 1.338337 CCGCTGTCAGACCGATAAGAT 59.662 52.381 3.32 0.00 0.00 2.40
496 501 0.738975 CCGCTGTCAGACCGATAAGA 59.261 55.000 3.32 0.00 0.00 2.10
497 502 0.456221 ACCGCTGTCAGACCGATAAG 59.544 55.000 3.32 0.00 0.00 1.73
498 503 1.753930 TACCGCTGTCAGACCGATAA 58.246 50.000 3.32 0.00 0.00 1.75
499 504 1.674441 CTTACCGCTGTCAGACCGATA 59.326 52.381 3.32 0.00 0.00 2.92
500 505 0.456221 CTTACCGCTGTCAGACCGAT 59.544 55.000 3.32 0.00 0.00 4.18
501 506 1.880894 CTTACCGCTGTCAGACCGA 59.119 57.895 3.32 0.00 0.00 4.69
502 507 1.805945 GCTTACCGCTGTCAGACCG 60.806 63.158 3.32 0.00 35.14 4.79
503 508 1.805945 CGCTTACCGCTGTCAGACC 60.806 63.158 3.32 0.00 36.13 3.85
504 509 0.179134 ATCGCTTACCGCTGTCAGAC 60.179 55.000 3.32 0.00 36.73 3.51
505 510 1.385528 TATCGCTTACCGCTGTCAGA 58.614 50.000 3.32 0.00 36.73 3.27
506 511 2.203800 TTATCGCTTACCGCTGTCAG 57.796 50.000 0.00 0.00 36.73 3.51
507 512 2.658373 TTTATCGCTTACCGCTGTCA 57.342 45.000 0.00 0.00 36.73 3.58
508 513 2.153247 CGATTTATCGCTTACCGCTGTC 59.847 50.000 0.00 0.00 43.84 3.51
509 514 2.124903 CGATTTATCGCTTACCGCTGT 58.875 47.619 0.00 0.00 43.84 4.40
510 515 2.837337 CGATTTATCGCTTACCGCTG 57.163 50.000 0.00 0.00 43.84 5.18
532 537 6.863645 ATATCTTCCGATATGCCGATAAATCG 59.136 38.462 5.38 5.38 43.23 3.34
533 538 8.085296 AGATATCTTCCGATATGCCGATAAATC 58.915 37.037 0.00 0.00 41.70 2.17
534 539 7.957002 AGATATCTTCCGATATGCCGATAAAT 58.043 34.615 0.00 0.00 41.70 1.40
535 540 7.348080 AGATATCTTCCGATATGCCGATAAA 57.652 36.000 0.00 0.00 41.70 1.40
536 541 6.961360 AGATATCTTCCGATATGCCGATAA 57.039 37.500 0.00 0.00 41.70 1.75
537 542 6.546034 TCAAGATATCTTCCGATATGCCGATA 59.454 38.462 15.24 0.00 41.70 2.92
538 543 5.360999 TCAAGATATCTTCCGATATGCCGAT 59.639 40.000 15.24 0.00 41.70 4.18
539 544 4.705023 TCAAGATATCTTCCGATATGCCGA 59.295 41.667 15.24 3.18 41.70 5.54
540 545 4.998788 TCAAGATATCTTCCGATATGCCG 58.001 43.478 15.24 0.82 41.70 5.69
541 546 6.166279 TGTTCAAGATATCTTCCGATATGCC 58.834 40.000 15.24 0.00 41.70 4.40
542 547 6.870965 ACTGTTCAAGATATCTTCCGATATGC 59.129 38.462 15.24 3.61 41.70 3.14
543 548 8.084684 TCACTGTTCAAGATATCTTCCGATATG 58.915 37.037 15.24 10.12 41.70 1.78
544 549 8.183104 TCACTGTTCAAGATATCTTCCGATAT 57.817 34.615 15.24 0.00 43.73 1.63
545 550 7.582667 TCACTGTTCAAGATATCTTCCGATA 57.417 36.000 15.24 2.48 36.61 2.92
546 551 6.471233 TCACTGTTCAAGATATCTTCCGAT 57.529 37.500 15.24 0.00 33.11 4.18
547 552 5.914898 TCACTGTTCAAGATATCTTCCGA 57.085 39.130 15.24 8.09 33.11 4.55
668 675 7.189693 TGCGATCATAATAATTCCTTGACAC 57.810 36.000 0.00 0.00 0.00 3.67
696 703 5.880901 TCCTAAGATGAAAAGCCTGAAACT 58.119 37.500 0.00 0.00 0.00 2.66
712 719 8.148351 CCACATCGGAGTAATTAATTCCTAAGA 58.852 37.037 3.39 2.46 36.56 2.10
740 747 0.616111 AGGATTCAGGCCGAGTGAGT 60.616 55.000 0.00 0.00 0.00 3.41
848 855 1.394618 ACTGCGAGAGGGATACAGTC 58.605 55.000 0.00 0.00 36.95 3.51
884 891 3.147595 TCTCGGCGATGGGGTGAG 61.148 66.667 11.27 0.00 0.00 3.51
885 892 3.458163 GTCTCGGCGATGGGGTGA 61.458 66.667 11.27 0.00 0.00 4.02
886 893 4.873129 CGTCTCGGCGATGGGGTG 62.873 72.222 11.27 0.00 0.00 4.61
924 931 2.039831 AGAGGTGGTGGTGGTGGT 60.040 61.111 0.00 0.00 0.00 4.16
1000 1010 0.820871 GAGAGACCTGCGAGGAACAT 59.179 55.000 8.91 0.00 37.67 2.71
1001 1011 1.587043 CGAGAGACCTGCGAGGAACA 61.587 60.000 8.91 0.00 37.67 3.18
1002 1012 1.137825 CGAGAGACCTGCGAGGAAC 59.862 63.158 8.91 3.59 37.67 3.62
1003 1013 1.303398 ACGAGAGACCTGCGAGGAA 60.303 57.895 8.91 0.00 37.67 3.36
1007 1017 0.671472 TAACGACGAGAGACCTGCGA 60.671 55.000 0.00 0.00 0.00 5.10
1053 1063 3.742248 GAGAGGGAGGGGACGGGAG 62.742 73.684 0.00 0.00 0.00 4.30
1054 1064 3.752167 GAGAGGGAGGGGACGGGA 61.752 72.222 0.00 0.00 0.00 5.14
1055 1065 2.824388 AAAGAGAGGGAGGGGACGGG 62.824 65.000 0.00 0.00 0.00 5.28
1056 1066 1.306226 AAAGAGAGGGAGGGGACGG 60.306 63.158 0.00 0.00 0.00 4.79
1057 1067 0.324830 AGAAAGAGAGGGAGGGGACG 60.325 60.000 0.00 0.00 0.00 4.79
1058 1068 1.491668 GAGAAAGAGAGGGAGGGGAC 58.508 60.000 0.00 0.00 0.00 4.46
1059 1069 0.033011 CGAGAAAGAGAGGGAGGGGA 60.033 60.000 0.00 0.00 0.00 4.81
1060 1070 0.033011 TCGAGAAAGAGAGGGAGGGG 60.033 60.000 0.00 0.00 0.00 4.79
1061 1071 1.853963 TTCGAGAAAGAGAGGGAGGG 58.146 55.000 0.00 0.00 0.00 4.30
1062 1072 4.479786 AAATTCGAGAAAGAGAGGGAGG 57.520 45.455 0.00 0.00 0.00 4.30
1091 1117 3.338250 AAGCATCCCCTCCGCCAA 61.338 61.111 0.00 0.00 0.00 4.52
1103 1129 1.886313 CGCCGCAGATCTGAAGCAT 60.886 57.895 27.04 0.00 32.58 3.79
1106 1132 1.880340 GGACGCCGCAGATCTGAAG 60.880 63.158 27.04 17.78 0.00 3.02
1129 1155 1.006832 CCCAACCAGCGATTACGAAG 58.993 55.000 0.00 0.00 42.66 3.79
1130 1156 1.022451 GCCCAACCAGCGATTACGAA 61.022 55.000 0.00 0.00 42.66 3.85
1136 1163 4.431131 CAGGGCCCAACCAGCGAT 62.431 66.667 27.56 0.00 42.05 4.58
1154 1181 2.825205 CAAGAACCAACCAAAAGCCAG 58.175 47.619 0.00 0.00 0.00 4.85
1175 1209 3.971032 AAAGAACAAAACGGAGAGCAG 57.029 42.857 0.00 0.00 0.00 4.24
1183 1217 6.126568 TCAGGAAACCTAAAGAACAAAACG 57.873 37.500 0.00 0.00 29.64 3.60
1184 1218 8.817100 CAAATCAGGAAACCTAAAGAACAAAAC 58.183 33.333 0.00 0.00 29.64 2.43
1187 1221 6.041523 CCCAAATCAGGAAACCTAAAGAACAA 59.958 38.462 0.00 0.00 29.64 2.83
1188 1222 5.538433 CCCAAATCAGGAAACCTAAAGAACA 59.462 40.000 0.00 0.00 29.64 3.18
1189 1223 5.538813 ACCCAAATCAGGAAACCTAAAGAAC 59.461 40.000 0.00 0.00 29.64 3.01
1191 1225 5.333566 ACCCAAATCAGGAAACCTAAAGA 57.666 39.130 0.00 0.00 29.64 2.52
1192 1226 6.419484 AAACCCAAATCAGGAAACCTAAAG 57.581 37.500 0.00 0.00 29.64 1.85
1194 1228 5.010213 CGAAAACCCAAATCAGGAAACCTAA 59.990 40.000 0.00 0.00 29.64 2.69
1199 1235 2.962421 AGCGAAAACCCAAATCAGGAAA 59.038 40.909 0.00 0.00 0.00 3.13
1270 1306 1.486726 AGATCACCGAACCCAGAATCC 59.513 52.381 0.00 0.00 0.00 3.01
1271 1307 2.990066 AGATCACCGAACCCAGAATC 57.010 50.000 0.00 0.00 0.00 2.52
1272 1308 2.700897 CCTAGATCACCGAACCCAGAAT 59.299 50.000 0.00 0.00 0.00 2.40
1273 1309 2.108168 CCTAGATCACCGAACCCAGAA 58.892 52.381 0.00 0.00 0.00 3.02
1274 1310 1.776662 CCTAGATCACCGAACCCAGA 58.223 55.000 0.00 0.00 0.00 3.86
1275 1311 0.105039 GCCTAGATCACCGAACCCAG 59.895 60.000 0.00 0.00 0.00 4.45
1276 1312 0.616395 TGCCTAGATCACCGAACCCA 60.616 55.000 0.00 0.00 0.00 4.51
1338 1374 4.873817 AGAAATGAGATCTGAGCGAGATG 58.126 43.478 0.00 0.00 41.91 2.90
1403 1439 4.032960 ACACATGTGCAAGATTTCCCTA 57.967 40.909 25.68 0.00 0.00 3.53
1442 1480 6.584942 GGACCACGATAAAAATTGAAGGAAAC 59.415 38.462 0.00 0.00 0.00 2.78
1453 1491 1.706305 ACCCAGGGACCACGATAAAAA 59.294 47.619 14.54 0.00 0.00 1.94
1467 1505 8.421002 CAAAGGTATGGAAATATAAAACCCAGG 58.579 37.037 0.00 0.00 0.00 4.45
1497 1535 8.540388 GGCAAGATCACCATAAAGGAGTATATA 58.460 37.037 0.00 0.00 41.22 0.86
1499 1537 6.328934 TGGCAAGATCACCATAAAGGAGTATA 59.671 38.462 0.00 0.00 41.22 1.47
1606 1647 8.997621 TTCATGGCGACTTATATTAATACTCC 57.002 34.615 0.00 0.00 0.00 3.85
1653 1694 5.129634 TGCTTAATCAACACAGTTGAAGGA 58.870 37.500 15.54 8.09 31.55 3.36
1715 1756 4.389374 CAAGTTGTATGTCCACCTGTCTT 58.611 43.478 0.00 0.00 0.00 3.01
1717 1758 2.484264 GCAAGTTGTATGTCCACCTGTC 59.516 50.000 4.48 0.00 0.00 3.51
1766 1807 3.011821 TCCTCACTGTACTCTTCCATCCT 59.988 47.826 0.00 0.00 0.00 3.24
1779 1820 1.349026 CCCAACATCTGTCCTCACTGT 59.651 52.381 0.00 0.00 0.00 3.55
1819 1860 2.793288 TGCAGAAGATGATGCCAAGA 57.207 45.000 0.00 0.00 41.85 3.02
1822 1863 2.490509 CAGTTTGCAGAAGATGATGCCA 59.509 45.455 0.00 0.00 41.85 4.92
1872 1913 2.042433 CTCCAGGGTTTACAAATCCCCA 59.958 50.000 0.22 0.00 40.14 4.96
1877 1918 1.615919 CCGGCTCCAGGGTTTACAAAT 60.616 52.381 0.00 0.00 0.00 2.32
1910 1951 4.767255 GTCCTGCCAGCAGTCGGG 62.767 72.222 17.86 4.20 42.15 5.14
1978 2019 4.567971 GAGAGAGGAGCATATGAACCATG 58.432 47.826 6.97 0.00 0.00 3.66
2029 2070 1.966451 GTTGGGAAGCCTGGACACG 60.966 63.158 0.00 0.00 0.00 4.49
2169 2216 6.457799 GGTTCGCCACTAACAACAATAATAGG 60.458 42.308 0.00 0.00 37.19 2.57
2170 2217 6.092944 TGGTTCGCCACTAACAACAATAATAG 59.907 38.462 0.00 0.00 43.56 1.73
2189 2236 2.051334 TTCCATGGGCTAATGGTTCG 57.949 50.000 13.02 0.00 46.24 3.95
2216 2263 6.798427 ATCTGAAGAACTACTCCAGCAATA 57.202 37.500 0.00 0.00 0.00 1.90
2217 2264 5.690464 ATCTGAAGAACTACTCCAGCAAT 57.310 39.130 0.00 0.00 0.00 3.56
2236 2283 6.839124 TTTTGCAAGGATGATACACAATCT 57.161 33.333 0.00 0.00 35.45 2.40
2267 2314 5.610398 ACCATTTTTGTCCAATGAAAGTCC 58.390 37.500 0.00 0.00 34.05 3.85
2281 2328 5.409214 CCTGTGGCAATCTAAACCATTTTTG 59.591 40.000 0.00 0.00 35.53 2.44
2331 2385 9.002600 CAGCTCCTATATAATGCATTTACACAA 57.997 33.333 18.75 0.00 0.00 3.33
2339 2393 6.386342 AGTGATCCAGCTCCTATATAATGCAT 59.614 38.462 0.00 0.00 0.00 3.96
2341 2395 6.047870 CAGTGATCCAGCTCCTATATAATGC 58.952 44.000 0.00 0.00 0.00 3.56
2391 2445 1.149174 CCCATCCTTCCCATCACCG 59.851 63.158 0.00 0.00 0.00 4.94
2400 2454 0.544697 TTAGTTCCCGCCCATCCTTC 59.455 55.000 0.00 0.00 0.00 3.46
2401 2455 0.546598 CTTAGTTCCCGCCCATCCTT 59.453 55.000 0.00 0.00 0.00 3.36
2406 2460 0.838987 ACCTTCTTAGTTCCCGCCCA 60.839 55.000 0.00 0.00 0.00 5.36
2412 2466 1.025113 GCCGCCACCTTCTTAGTTCC 61.025 60.000 0.00 0.00 0.00 3.62
2443 2497 2.686106 TACCCCCTCACGCCCTTC 60.686 66.667 0.00 0.00 0.00 3.46
2446 2500 2.042639 TACTACCCCCTCACGCCC 60.043 66.667 0.00 0.00 0.00 6.13
2451 2505 4.028825 GCTAAAACTCTACTACCCCCTCA 58.971 47.826 0.00 0.00 0.00 3.86
2465 2519 2.029649 TCTTACTGTCGGCGCTAAAACT 60.030 45.455 7.64 0.00 0.00 2.66
2479 2533 2.343101 TCGCGGTCCATTTTCTTACTG 58.657 47.619 6.13 0.00 0.00 2.74
2495 2549 2.578163 TTCTCCAGCCCATCTTCGCG 62.578 60.000 0.00 0.00 0.00 5.87
2499 2553 1.067295 TGTGTTCTCCAGCCCATCTT 58.933 50.000 0.00 0.00 0.00 2.40
2509 2563 4.241681 GAGACTGTGAGATTGTGTTCTCC 58.758 47.826 0.00 0.00 41.24 3.71
2511 2565 4.343526 ACTGAGACTGTGAGATTGTGTTCT 59.656 41.667 0.00 0.00 0.00 3.01
2518 2572 3.234353 TGGACACTGAGACTGTGAGATT 58.766 45.455 13.80 0.00 36.91 2.40
2523 2577 3.249320 CACATTTGGACACTGAGACTGTG 59.751 47.826 0.00 0.00 38.85 3.66
2527 2581 3.466836 TCACACATTTGGACACTGAGAC 58.533 45.455 0.00 0.00 0.00 3.36
2530 2584 3.836365 TCTCACACATTTGGACACTGA 57.164 42.857 0.00 0.00 0.00 3.41
2531 2585 4.096231 TGTTTCTCACACATTTGGACACTG 59.904 41.667 0.00 0.00 0.00 3.66
2532 2586 4.269183 TGTTTCTCACACATTTGGACACT 58.731 39.130 0.00 0.00 0.00 3.55
2588 2642 7.823799 TCTTTATGTTCATTAGCACATGTCTCA 59.176 33.333 0.00 0.00 33.62 3.27
2609 2663 9.911138 TTATGTTACACATGACGTACTTCTTTA 57.089 29.630 0.00 0.00 39.53 1.85
2613 2667 8.865978 TCAATTATGTTACACATGACGTACTTC 58.134 33.333 0.00 0.00 39.53 3.01
2645 2699 7.461182 AATACAACAGCAAGGCAAGTAATTA 57.539 32.000 0.00 0.00 0.00 1.40
2685 2739 9.476202 TCAACGATAATAGATGACCTTATTGTG 57.524 33.333 0.00 0.00 32.40 3.33
2693 2747 7.962964 TTGGATTCAACGATAATAGATGACC 57.037 36.000 0.00 0.00 0.00 4.02
2866 2920 9.352784 CAATAGATCTGGTAATTTTCGCAAAAA 57.647 29.630 5.18 0.00 38.66 1.94
2867 2921 8.519526 ACAATAGATCTGGTAATTTTCGCAAAA 58.480 29.630 5.18 0.00 34.41 2.44
2868 2922 8.050778 ACAATAGATCTGGTAATTTTCGCAAA 57.949 30.769 5.18 0.00 0.00 3.68
2869 2923 7.624360 ACAATAGATCTGGTAATTTTCGCAA 57.376 32.000 5.18 0.00 0.00 4.85
2870 2924 8.725405 TTACAATAGATCTGGTAATTTTCGCA 57.275 30.769 5.18 0.00 0.00 5.10
2871 2925 9.651718 CTTTACAATAGATCTGGTAATTTTCGC 57.348 33.333 5.18 0.00 0.00 4.70
2878 2932 9.832445 GGTGAATCTTTACAATAGATCTGGTAA 57.168 33.333 5.18 8.68 31.28 2.85
2879 2933 8.141909 CGGTGAATCTTTACAATAGATCTGGTA 58.858 37.037 5.18 2.64 31.28 3.25
2880 2934 6.986817 CGGTGAATCTTTACAATAGATCTGGT 59.013 38.462 5.18 3.66 31.28 4.00
2881 2935 6.425114 CCGGTGAATCTTTACAATAGATCTGG 59.575 42.308 5.18 0.00 31.28 3.86
2882 2936 7.210174 TCCGGTGAATCTTTACAATAGATCTG 58.790 38.462 5.18 0.00 31.28 2.90
2883 2937 7.361457 TCCGGTGAATCTTTACAATAGATCT 57.639 36.000 0.00 0.00 31.28 2.75
2884 2938 7.711339 AGTTCCGGTGAATCTTTACAATAGATC 59.289 37.037 0.00 0.00 31.28 2.75
2885 2939 7.565680 AGTTCCGGTGAATCTTTACAATAGAT 58.434 34.615 0.00 0.00 33.87 1.98
2886 2940 6.942976 AGTTCCGGTGAATCTTTACAATAGA 58.057 36.000 0.00 0.00 31.98 1.98
2887 2941 7.762615 TGTAGTTCCGGTGAATCTTTACAATAG 59.237 37.037 0.00 0.00 31.98 1.73
2888 2942 7.613585 TGTAGTTCCGGTGAATCTTTACAATA 58.386 34.615 0.00 0.00 31.98 1.90
2889 2943 6.469410 TGTAGTTCCGGTGAATCTTTACAAT 58.531 36.000 0.00 0.00 31.98 2.71
2890 2944 5.856156 TGTAGTTCCGGTGAATCTTTACAA 58.144 37.500 0.00 0.00 31.98 2.41
2891 2945 5.471556 TGTAGTTCCGGTGAATCTTTACA 57.528 39.130 0.00 0.00 31.98 2.41
2892 2946 6.790285 TTTGTAGTTCCGGTGAATCTTTAC 57.210 37.500 0.00 0.00 31.98 2.01
2893 2947 6.766944 TGTTTTGTAGTTCCGGTGAATCTTTA 59.233 34.615 0.00 0.00 31.98 1.85
2894 2948 5.591067 TGTTTTGTAGTTCCGGTGAATCTTT 59.409 36.000 0.00 0.00 31.98 2.52
2895 2949 5.008316 GTGTTTTGTAGTTCCGGTGAATCTT 59.992 40.000 0.00 0.00 31.98 2.40
2896 2950 4.514066 GTGTTTTGTAGTTCCGGTGAATCT 59.486 41.667 0.00 0.00 31.98 2.40
2897 2951 4.319984 GGTGTTTTGTAGTTCCGGTGAATC 60.320 45.833 0.00 0.00 31.98 2.52
2898 2952 3.566742 GGTGTTTTGTAGTTCCGGTGAAT 59.433 43.478 0.00 0.00 31.98 2.57
2899 2953 2.944349 GGTGTTTTGTAGTTCCGGTGAA 59.056 45.455 0.00 0.00 0.00 3.18
2900 2954 2.171027 AGGTGTTTTGTAGTTCCGGTGA 59.829 45.455 0.00 0.00 0.00 4.02
2901 2955 2.546789 GAGGTGTTTTGTAGTTCCGGTG 59.453 50.000 0.00 0.00 0.00 4.94
2902 2956 2.171027 TGAGGTGTTTTGTAGTTCCGGT 59.829 45.455 0.00 0.00 0.00 5.28
2903 2957 2.841215 TGAGGTGTTTTGTAGTTCCGG 58.159 47.619 0.00 0.00 0.00 5.14
2904 2958 4.594136 GTTTGAGGTGTTTTGTAGTTCCG 58.406 43.478 0.00 0.00 0.00 4.30
2905 2959 4.095334 ACGTTTGAGGTGTTTTGTAGTTCC 59.905 41.667 0.00 0.00 0.00 3.62
2906 2960 5.163834 TGACGTTTGAGGTGTTTTGTAGTTC 60.164 40.000 0.00 0.00 0.00 3.01
2907 2961 4.696402 TGACGTTTGAGGTGTTTTGTAGTT 59.304 37.500 0.00 0.00 0.00 2.24
2908 2962 4.255301 TGACGTTTGAGGTGTTTTGTAGT 58.745 39.130 0.00 0.00 0.00 2.73
2909 2963 4.868450 TGACGTTTGAGGTGTTTTGTAG 57.132 40.909 0.00 0.00 0.00 2.74
2910 2964 6.922247 TTATGACGTTTGAGGTGTTTTGTA 57.078 33.333 0.00 0.00 0.00 2.41
2911 2965 5.821516 TTATGACGTTTGAGGTGTTTTGT 57.178 34.783 0.00 0.00 0.00 2.83
2912 2966 7.692908 ATTTTATGACGTTTGAGGTGTTTTG 57.307 32.000 0.00 0.00 0.00 2.44
2913 2967 9.240159 GTAATTTTATGACGTTTGAGGTGTTTT 57.760 29.630 0.00 0.00 0.00 2.43
2914 2968 8.626526 AGTAATTTTATGACGTTTGAGGTGTTT 58.373 29.630 0.00 0.00 0.00 2.83
2915 2969 8.161699 AGTAATTTTATGACGTTTGAGGTGTT 57.838 30.769 0.00 0.00 0.00 3.32
2916 2970 7.739498 AGTAATTTTATGACGTTTGAGGTGT 57.261 32.000 0.00 0.00 0.00 4.16
2917 2971 7.477422 CGAAGTAATTTTATGACGTTTGAGGTG 59.523 37.037 0.00 0.00 0.00 4.00
2918 2972 7.385752 TCGAAGTAATTTTATGACGTTTGAGGT 59.614 33.333 0.00 0.00 0.00 3.85
2919 2973 7.735500 TCGAAGTAATTTTATGACGTTTGAGG 58.264 34.615 0.00 0.00 0.00 3.86
2920 2974 7.898309 CCTCGAAGTAATTTTATGACGTTTGAG 59.102 37.037 0.00 0.00 0.00 3.02
2921 2975 7.385752 ACCTCGAAGTAATTTTATGACGTTTGA 59.614 33.333 0.00 0.00 0.00 2.69
2922 2976 7.515643 ACCTCGAAGTAATTTTATGACGTTTG 58.484 34.615 0.00 0.00 0.00 2.93
2923 2977 7.662604 ACCTCGAAGTAATTTTATGACGTTT 57.337 32.000 0.00 0.00 0.00 3.60
2924 2978 7.814107 TGTACCTCGAAGTAATTTTATGACGTT 59.186 33.333 0.00 0.00 0.00 3.99
2925 2979 7.315142 TGTACCTCGAAGTAATTTTATGACGT 58.685 34.615 0.00 0.00 0.00 4.34
2926 2980 7.043590 CCTGTACCTCGAAGTAATTTTATGACG 60.044 40.741 0.00 0.00 0.00 4.35
2927 2981 7.224167 CCCTGTACCTCGAAGTAATTTTATGAC 59.776 40.741 0.00 0.00 0.00 3.06
2928 2982 7.124599 TCCCTGTACCTCGAAGTAATTTTATGA 59.875 37.037 0.00 0.00 0.00 2.15
2929 2983 7.224167 GTCCCTGTACCTCGAAGTAATTTTATG 59.776 40.741 0.00 0.00 0.00 1.90
2930 2984 7.270779 GTCCCTGTACCTCGAAGTAATTTTAT 58.729 38.462 0.00 0.00 0.00 1.40
2931 2985 6.351286 GGTCCCTGTACCTCGAAGTAATTTTA 60.351 42.308 0.00 0.00 36.53 1.52
2932 2986 5.485620 GTCCCTGTACCTCGAAGTAATTTT 58.514 41.667 0.00 0.00 0.00 1.82
2933 2987 4.081254 GGTCCCTGTACCTCGAAGTAATTT 60.081 45.833 0.00 0.00 36.53 1.82
2934 2988 3.450096 GGTCCCTGTACCTCGAAGTAATT 59.550 47.826 0.00 0.00 36.53 1.40
2935 2989 3.029570 GGTCCCTGTACCTCGAAGTAAT 58.970 50.000 0.00 0.00 36.53 1.89
2936 2990 2.225091 TGGTCCCTGTACCTCGAAGTAA 60.225 50.000 0.00 0.00 40.44 2.24
2937 2991 1.355381 TGGTCCCTGTACCTCGAAGTA 59.645 52.381 0.00 0.00 40.44 2.24
2938 2992 0.113776 TGGTCCCTGTACCTCGAAGT 59.886 55.000 0.00 0.00 40.44 3.01
2939 2993 1.486211 ATGGTCCCTGTACCTCGAAG 58.514 55.000 0.00 0.00 40.44 3.79
2940 2994 1.553248 CAATGGTCCCTGTACCTCGAA 59.447 52.381 0.00 0.00 40.44 3.71
2941 2995 1.191535 CAATGGTCCCTGTACCTCGA 58.808 55.000 0.00 0.00 40.44 4.04
2942 2996 1.191535 TCAATGGTCCCTGTACCTCG 58.808 55.000 0.00 0.00 40.44 4.63
2943 2997 2.572104 ACTTCAATGGTCCCTGTACCTC 59.428 50.000 0.00 0.00 40.44 3.85
2944 2998 2.632537 ACTTCAATGGTCCCTGTACCT 58.367 47.619 0.00 0.00 40.44 3.08
2945 2999 3.434940 AACTTCAATGGTCCCTGTACC 57.565 47.619 0.00 0.00 40.19 3.34
2946 3000 5.161943 AGTAACTTCAATGGTCCCTGTAC 57.838 43.478 0.00 0.00 0.00 2.90
2947 3001 5.105064 GCTAGTAACTTCAATGGTCCCTGTA 60.105 44.000 0.00 0.00 0.00 2.74
2948 3002 4.323562 GCTAGTAACTTCAATGGTCCCTGT 60.324 45.833 0.00 0.00 0.00 4.00
2949 3003 4.192317 GCTAGTAACTTCAATGGTCCCTG 58.808 47.826 0.00 0.00 0.00 4.45
2950 3004 3.844211 TGCTAGTAACTTCAATGGTCCCT 59.156 43.478 0.00 0.00 0.00 4.20
2951 3005 3.939592 GTGCTAGTAACTTCAATGGTCCC 59.060 47.826 0.00 0.00 0.00 4.46
2952 3006 4.575885 TGTGCTAGTAACTTCAATGGTCC 58.424 43.478 0.00 0.00 0.00 4.46
2953 3007 6.371548 TGATTGTGCTAGTAACTTCAATGGTC 59.628 38.462 0.20 0.00 0.00 4.02
2954 3008 6.237901 TGATTGTGCTAGTAACTTCAATGGT 58.762 36.000 0.20 0.00 0.00 3.55
2955 3009 6.741992 TGATTGTGCTAGTAACTTCAATGG 57.258 37.500 0.20 0.00 0.00 3.16
2956 3010 6.690098 GCATGATTGTGCTAGTAACTTCAATG 59.310 38.462 0.00 1.68 41.82 2.82
3022 3076 1.628340 CTGGACCTGGTACCATGTTCA 59.372 52.381 24.88 24.88 35.54 3.18
3041 3095 2.906389 TGTTCTTCTACCCAGATGTGCT 59.094 45.455 0.00 0.00 0.00 4.40
3051 3105 6.981722 ACCATTTTGAACATGTTCTTCTACC 58.018 36.000 32.57 11.44 40.14 3.18
3097 3151 3.161866 GGAAAGTTCTGGGGCATTGTTA 58.838 45.455 0.00 0.00 0.00 2.41
3098 3152 1.970640 GGAAAGTTCTGGGGCATTGTT 59.029 47.619 0.00 0.00 0.00 2.83
3111 3165 9.259832 AGAAAATAAATGATAGCCAGGAAAGTT 57.740 29.630 0.00 0.00 0.00 2.66
3112 3166 8.829373 AGAAAATAAATGATAGCCAGGAAAGT 57.171 30.769 0.00 0.00 0.00 2.66
3142 3196 7.447374 TGAATTCAATTTGTAACATCCTCGT 57.553 32.000 5.45 0.00 0.00 4.18
3143 3197 9.655769 CTATGAATTCAATTTGTAACATCCTCG 57.344 33.333 13.09 0.00 0.00 4.63
3156 3214 3.316308 GGAGCACGCCTATGAATTCAATT 59.684 43.478 13.09 0.00 0.00 2.32
3158 3216 2.092968 AGGAGCACGCCTATGAATTCAA 60.093 45.455 13.09 1.39 36.22 2.69
3162 3220 0.833287 ACAGGAGCACGCCTATGAAT 59.167 50.000 0.00 0.00 36.22 2.57
3167 3225 2.047274 GCAACAGGAGCACGCCTA 60.047 61.111 0.00 0.00 36.22 3.93
3180 3238 4.176271 ACAAAGTTCAGAAGCAAAGCAAC 58.824 39.130 0.00 0.00 0.00 4.17
3212 3270 2.887152 AGCAAAAGACATCACCAGGAAC 59.113 45.455 0.00 0.00 0.00 3.62
3217 3275 2.223782 GCACAAGCAAAAGACATCACCA 60.224 45.455 0.00 0.00 41.58 4.17
3243 3301 3.440107 AGGGAAATTGTCACCCCTAGGG 61.440 54.545 22.25 22.25 46.80 3.53
3266 3324 8.359642 CAACAATAAAGGAAGGAACAAATCTCA 58.640 33.333 0.00 0.00 0.00 3.27
3268 3326 8.250143 ACAACAATAAAGGAAGGAACAAATCT 57.750 30.769 0.00 0.00 0.00 2.40
3275 3333 4.580995 TCGCAACAACAATAAAGGAAGGAA 59.419 37.500 0.00 0.00 0.00 3.36
3276 3334 4.138290 TCGCAACAACAATAAAGGAAGGA 58.862 39.130 0.00 0.00 0.00 3.36
3280 3338 3.997681 TCGATCGCAACAACAATAAAGGA 59.002 39.130 11.09 0.00 0.00 3.36
3281 3339 4.142902 ACTCGATCGCAACAACAATAAAGG 60.143 41.667 11.09 0.00 0.00 3.11
3282 3340 4.957971 ACTCGATCGCAACAACAATAAAG 58.042 39.130 11.09 0.00 0.00 1.85
3311 3369 7.201893 GCCCAGCTACTACTACTAAACAACTAT 60.202 40.741 0.00 0.00 0.00 2.12
3314 3372 5.107824 GCCCAGCTACTACTACTAAACAAC 58.892 45.833 0.00 0.00 0.00 3.32
3363 3421 1.941325 ATAAGCGAGCTACAAGCACC 58.059 50.000 0.00 0.00 45.56 5.01
3364 3422 2.537730 GCAATAAGCGAGCTACAAGCAC 60.538 50.000 0.00 0.00 45.56 4.40
3385 3443 3.287222 TCCGATTTCCATTAAGGGCAAG 58.713 45.455 0.00 0.00 38.24 4.01
3388 3446 2.029918 GCATCCGATTTCCATTAAGGGC 60.030 50.000 0.00 0.00 38.24 5.19
3393 3451 4.338118 GGTTTCTGCATCCGATTTCCATTA 59.662 41.667 0.00 0.00 0.00 1.90
3404 3462 2.922335 GCAAAGAACGGTTTCTGCATCC 60.922 50.000 14.19 0.00 41.56 3.51
3407 3465 1.388547 AGCAAAGAACGGTTTCTGCA 58.611 45.000 18.64 0.00 41.56 4.41
3437 3495 8.503486 ACGTACTCAATTAGCTATTAACATCG 57.497 34.615 0.00 0.00 0.00 3.84
3439 3497 9.595823 ACAACGTACTCAATTAGCTATTAACAT 57.404 29.630 0.00 0.00 0.00 2.71
3440 3498 8.865978 CACAACGTACTCAATTAGCTATTAACA 58.134 33.333 0.00 0.00 0.00 2.41
3462 3523 7.175641 ACCAAAACAAATTCAAAATGGACACAA 59.824 29.630 6.55 0.00 0.00 3.33
3463 3524 6.656693 ACCAAAACAAATTCAAAATGGACACA 59.343 30.769 6.55 0.00 0.00 3.72
3524 3587 6.401796 GGTCAGCGGTAAACAAAGTACTATTG 60.402 42.308 13.08 13.08 0.00 1.90
3525 3588 5.640783 GGTCAGCGGTAAACAAAGTACTATT 59.359 40.000 0.00 0.00 0.00 1.73
3544 3607 9.573166 TTATCAAAATATTGTGGATAGGGTCAG 57.427 33.333 5.78 0.00 37.79 3.51
3567 3630 7.244886 ACACGGTAGGGTAAGTAAGTTTTAT 57.755 36.000 0.00 0.00 27.92 1.40
3572 3635 5.305386 AGAAAACACGGTAGGGTAAGTAAGT 59.695 40.000 0.00 0.00 30.86 2.24
3581 3644 2.359531 TGCAAAAGAAAACACGGTAGGG 59.640 45.455 0.00 0.00 0.00 3.53
3614 3677 5.182760 CCTTGAAATCTCCAAAGTCTTGAGG 59.817 44.000 1.27 0.19 34.14 3.86
3633 3696 1.032114 TCGCTGATCTCGCTCCTTGA 61.032 55.000 0.00 0.00 0.00 3.02
3820 3883 2.438434 GGGCCTCGTCATTGTGGG 60.438 66.667 0.84 0.00 0.00 4.61
3842 3905 3.500982 CTTTGGCATGTTGTACGGAATG 58.499 45.455 0.00 0.00 0.00 2.67
3846 3909 0.881118 AGCTTTGGCATGTTGTACGG 59.119 50.000 0.00 0.00 41.70 4.02
3848 3911 2.669391 GCAGAGCTTTGGCATGTTGTAC 60.669 50.000 6.36 0.00 41.70 2.90
3878 3941 4.940046 GTCCCAATCAGCATGTATCCTATG 59.060 45.833 0.00 0.00 37.40 2.23
3893 3958 2.135664 CGACATCCGTAGTCCCAATC 57.864 55.000 0.00 0.00 32.41 2.67
4031 4096 6.602406 AGAAGCTGTTCTCATAGCAATCATTT 59.398 34.615 0.00 0.00 38.84 2.32
4032 4097 6.038382 CAGAAGCTGTTCTCATAGCAATCATT 59.962 38.462 0.00 0.00 41.40 2.57
4034 4099 4.874396 CAGAAGCTGTTCTCATAGCAATCA 59.126 41.667 0.00 0.00 41.40 2.57
4037 4102 3.603532 CCAGAAGCTGTTCTCATAGCAA 58.396 45.455 0.00 0.00 41.40 3.91
4129 4397 2.073252 TATGGCCTCATCGTCACTCT 57.927 50.000 3.32 0.00 34.96 3.24
4155 4423 2.917971 GTCCTTCGAAAGAGTGATCGTG 59.082 50.000 0.00 0.00 43.69 4.35
4164 4432 6.008960 ACCTAACTTCTAGTCCTTCGAAAGA 58.991 40.000 0.00 0.00 39.20 2.52
4167 4435 6.008960 AGAACCTAACTTCTAGTCCTTCGAA 58.991 40.000 0.00 0.00 0.00 3.71
4287 4592 6.832384 ACATAACATGGAAGAAGATGCTTCAT 59.168 34.615 9.56 0.00 44.71 2.57
4361 4666 4.953579 ACCCACACAAGTTTACTCAACAAT 59.046 37.500 0.00 0.00 37.93 2.71
4379 4684 4.929819 AGAACCATGTTTTTACACCCAC 57.070 40.909 0.00 0.00 0.00 4.61
4454 4765 5.647589 ACTTCCGAAAAGAAACAGAAAACC 58.352 37.500 4.76 0.00 0.00 3.27
4466 4777 7.900782 TGGTTAATCTAGAACTTCCGAAAAG 57.099 36.000 0.00 0.00 0.00 2.27
4467 4778 8.726988 CAATGGTTAATCTAGAACTTCCGAAAA 58.273 33.333 0.00 0.00 0.00 2.29
4472 4783 7.110155 TCACCAATGGTTAATCTAGAACTTCC 58.890 38.462 0.16 0.00 31.02 3.46
4505 4816 6.725834 AGTGGGACATATTGAATTTTCCAACT 59.274 34.615 4.45 4.45 44.52 3.16
4506 4817 6.813152 CAGTGGGACATATTGAATTTTCCAAC 59.187 38.462 0.00 0.81 44.52 3.77
4531 4842 3.434319 CACGCCTGCATGACCACC 61.434 66.667 0.00 0.00 0.00 4.61
4546 4857 1.808411 TCAAAGACGCTTCATCCCAC 58.192 50.000 0.00 0.00 0.00 4.61
4582 4893 3.321111 TCATACGAAGCTTCCCCAGTATC 59.679 47.826 20.62 0.00 0.00 2.24
4649 4961 9.787435 TCTGTACCTATTTAAGCTTCTTTTTCA 57.213 29.630 0.00 0.00 0.00 2.69
4666 4978 1.890489 TGCGAGCTGTTTCTGTACCTA 59.110 47.619 0.00 0.00 0.00 3.08
4678 4990 1.081094 TTCATCACATGTGCGAGCTG 58.919 50.000 21.38 12.17 0.00 4.24
4683 4995 0.179156 GCCCTTTCATCACATGTGCG 60.179 55.000 21.38 14.15 0.00 5.34
4765 5115 0.179034 GGAGCCTATGCAGTTCCAGG 60.179 60.000 2.91 0.61 41.13 4.45
4798 5148 1.177256 AGCCGTTACGTCACCAGTCT 61.177 55.000 3.52 0.00 0.00 3.24
4817 5167 4.138290 TGGACTCTTTTTGAATTGCCGTA 58.862 39.130 0.00 0.00 0.00 4.02
4827 5178 6.667007 AAGCAAATTGTTGGACTCTTTTTG 57.333 33.333 0.00 0.00 35.10 2.44
4833 5184 2.802247 GCCAAAGCAAATTGTTGGACTC 59.198 45.455 16.55 0.00 43.82 3.36
4835 5186 1.872952 GGCCAAAGCAAATTGTTGGAC 59.127 47.619 16.55 11.44 43.82 4.02
4849 5200 2.554893 GGTCACGTTATTTCTGGCCAAA 59.445 45.455 7.01 0.00 29.43 3.28
4881 5232 2.058593 CCCCCTGGTCATCTTTAAGC 57.941 55.000 0.00 0.00 0.00 3.09
4901 5252 2.125106 CACCTTCCAGCCCGCTAC 60.125 66.667 0.00 0.00 0.00 3.58
4902 5253 4.096003 GCACCTTCCAGCCCGCTA 62.096 66.667 0.00 0.00 0.00 4.26
4918 5269 1.024579 ATCGGGTTTGACATGTCCGC 61.025 55.000 22.85 14.17 40.42 5.54
4967 5318 8.352201 CAAGATCTGTATTGTCAACTTTGGAAA 58.648 33.333 0.00 0.00 0.00 3.13
4972 5323 8.641498 AATCCAAGATCTGTATTGTCAACTTT 57.359 30.769 0.00 0.00 0.00 2.66
4978 5329 8.498054 TCAAGAAATCCAAGATCTGTATTGTC 57.502 34.615 0.00 0.00 0.00 3.18
5057 5408 2.408050 GTGTGCTTCACTTCATCGTCT 58.592 47.619 5.59 0.00 43.13 4.18
5091 5442 1.544825 CCATGGGCCTCGATACCGAT 61.545 60.000 2.85 0.00 44.62 4.18
5117 5468 2.888834 AGAAAATTGCACGCAAACCT 57.111 40.000 8.76 1.27 39.55 3.50
5146 5500 0.543749 GCCTCCTGCACATCCTAGTT 59.456 55.000 0.00 0.00 40.77 2.24
5154 5508 1.671054 GTTTAGCGCCTCCTGCACA 60.671 57.895 2.29 0.00 41.33 4.57
5157 5511 2.167861 CGAGTTTAGCGCCTCCTGC 61.168 63.158 2.29 0.00 0.00 4.85
5159 5513 1.668101 CCTCGAGTTTAGCGCCTCCT 61.668 60.000 12.31 0.00 0.00 3.69
5167 5521 4.178540 TCCGTTATTTGCCTCGAGTTTAG 58.821 43.478 12.31 0.00 0.00 1.85
5181 5535 4.847990 TTCATTACACCCCTCCGTTATT 57.152 40.909 0.00 0.00 0.00 1.40
5205 5559 9.771534 AGCATCTTTGGAATTAAGACTACTATC 57.228 33.333 0.00 0.00 34.68 2.08
5207 5561 9.383519 CAAGCATCTTTGGAATTAAGACTACTA 57.616 33.333 0.00 0.00 34.68 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.