Multiple sequence alignment - TraesCS3A01G489500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G489500 chr3A 100.000 2389 0 0 2280 4668 716965675 716963287 0.000000e+00 4412.0
1 TraesCS3A01G489500 chr3A 100.000 2063 0 0 1 2063 716967954 716965892 0.000000e+00 3810.0
2 TraesCS3A01G489500 chr3A 81.124 890 102 31 938 1792 716948318 716947460 0.000000e+00 652.0
3 TraesCS3A01G489500 chr3A 80.024 836 109 33 994 1789 717010996 717010179 2.540000e-157 566.0
4 TraesCS3A01G489500 chr3A 80.234 769 108 34 998 1737 717297220 717297973 5.540000e-149 538.0
5 TraesCS3A01G489500 chr3A 94.271 192 9 2 631 821 647018536 647018726 4.760000e-75 292.0
6 TraesCS3A01G489500 chr3A 80.876 251 43 3 3687 3937 716946539 716946294 4.970000e-45 193.0
7 TraesCS3A01G489500 chr3A 100.000 76 0 0 4787 4862 716963168 716963093 1.820000e-29 141.0
8 TraesCS3A01G489500 chr3A 93.103 58 4 0 848 905 717296899 717296956 8.670000e-13 86.1
9 TraesCS3A01G489500 chr3D 90.220 1953 133 25 2752 4668 587594960 587593030 0.000000e+00 2495.0
10 TraesCS3A01G489500 chr3D 95.525 1229 47 4 816 2040 587596705 587595481 0.000000e+00 1958.0
11 TraesCS3A01G489500 chr3D 93.825 502 28 3 1 501 587597575 587597076 0.000000e+00 752.0
12 TraesCS3A01G489500 chr3D 82.888 824 92 28 936 1735 587586648 587585850 0.000000e+00 695.0
13 TraesCS3A01G489500 chr3D 82.045 841 103 29 994 1789 587648507 587647670 0.000000e+00 673.0
14 TraesCS3A01G489500 chr3D 81.081 777 88 33 998 1737 587745681 587746435 2.540000e-157 566.0
15 TraesCS3A01G489500 chr3D 93.158 190 13 0 632 821 100392410 100392599 3.710000e-71 279.0
16 TraesCS3A01G489500 chr3D 97.794 136 3 0 499 634 587596837 587596702 8.140000e-58 235.0
17 TraesCS3A01G489500 chr3D 89.655 58 6 0 848 905 587745358 587745415 1.880000e-09 75.0
18 TraesCS3A01G489500 chr3D 91.111 45 3 1 1748 1792 587585786 587585743 5.260000e-05 60.2
19 TraesCS3A01G489500 chr3B 89.871 1935 156 25 2752 4668 784899465 784897553 0.000000e+00 2451.0
20 TraesCS3A01G489500 chr3B 93.076 1242 57 14 816 2053 784901067 784899851 0.000000e+00 1790.0
21 TraesCS3A01G489500 chr3B 81.477 826 94 29 1011 1792 784870599 784869789 1.490000e-174 623.0
22 TraesCS3A01G489500 chr3B 80.569 844 113 31 994 1789 785043179 785042339 1.940000e-168 603.0
23 TraesCS3A01G489500 chr3B 80.103 779 95 31 998 1737 785280735 785281492 4.310000e-145 525.0
24 TraesCS3A01G489500 chr3B 95.722 187 8 0 448 634 784901250 784901064 7.910000e-78 302.0
25 TraesCS3A01G489500 chr3B 72.979 903 181 38 3111 3988 785040099 785039235 1.740000e-64 257.0
26 TraesCS3A01G489500 chr3B 82.379 227 36 2 109 335 579893802 579893580 1.380000e-45 195.0
27 TraesCS3A01G489500 chr5D 86.471 340 35 6 2419 2756 8027511 8027841 3.580000e-96 363.0
28 TraesCS3A01G489500 chr5D 88.129 278 28 3 2474 2751 41450137 41450409 4.690000e-85 326.0
29 TraesCS3A01G489500 chr5D 83.030 330 47 8 2419 2743 393812516 393812841 1.710000e-74 291.0
30 TraesCS3A01G489500 chrUn 85.345 348 39 8 2419 2756 323126857 323126512 2.780000e-92 350.0
31 TraesCS3A01G489500 chrUn 85.345 348 39 8 2419 2756 323130073 323129728 2.780000e-92 350.0
32 TraesCS3A01G489500 chrUn 85.345 348 39 8 2419 2756 353152688 353153033 2.780000e-92 350.0
33 TraesCS3A01G489500 chrUn 100.000 33 0 0 2385 2417 323126921 323126889 1.460000e-05 62.1
34 TraesCS3A01G489500 chrUn 100.000 33 0 0 2385 2417 323130137 323130105 1.460000e-05 62.1
35 TraesCS3A01G489500 chrUn 100.000 33 0 0 2385 2417 353152624 353152656 1.460000e-05 62.1
36 TraesCS3A01G489500 chr5A 85.933 327 42 4 2419 2744 495877174 495877497 3.600000e-91 346.0
37 TraesCS3A01G489500 chr7B 84.756 328 41 7 2419 2742 593072356 593072034 2.180000e-83 320.0
38 TraesCS3A01G489500 chr7B 79.184 245 45 6 109 350 124527898 124527657 1.080000e-36 165.0
39 TraesCS3A01G489500 chr1A 94.737 190 10 0 634 823 579321563 579321374 3.680000e-76 296.0
40 TraesCS3A01G489500 chr1D 94.709 189 10 0 632 820 176952970 176953158 1.320000e-75 294.0
41 TraesCS3A01G489500 chr1D 82.515 326 53 3 2420 2742 11137536 11137860 2.860000e-72 283.0
42 TraesCS3A01G489500 chr1D 83.404 235 37 2 112 346 347198689 347198457 2.950000e-52 217.0
43 TraesCS3A01G489500 chr5B 94.211 190 11 0 632 821 447830662 447830851 1.710000e-74 291.0
44 TraesCS3A01G489500 chr4D 93.782 193 12 0 632 824 277419834 277419642 1.710000e-74 291.0
45 TraesCS3A01G489500 chr4D 93.750 192 12 0 631 822 503922210 503922019 6.160000e-74 289.0
46 TraesCS3A01G489500 chr6D 93.299 194 13 0 626 819 381549086 381548893 2.210000e-73 287.0
47 TraesCS3A01G489500 chr7D 91.304 207 17 1 633 838 555214005 555213799 1.030000e-71 281.0
48 TraesCS3A01G489500 chr7D 81.962 316 41 11 2443 2751 61746636 61746330 2.250000e-63 254.0
49 TraesCS3A01G489500 chr6A 82.334 317 51 5 2427 2742 435777785 435778097 2.230000e-68 270.0
50 TraesCS3A01G489500 chr6A 80.952 231 42 2 117 346 605263869 605264098 1.070000e-41 182.0
51 TraesCS3A01G489500 chr2D 85.774 239 31 3 100 336 159321866 159322103 2.910000e-62 250.0
52 TraesCS3A01G489500 chr4B 82.427 239 40 2 109 346 57270354 57270591 1.770000e-49 207.0
53 TraesCS3A01G489500 chr4B 81.633 245 41 4 109 349 515563887 515563643 2.970000e-47 200.0
54 TraesCS3A01G489500 chr4B 81.172 239 42 3 109 346 57527449 57527213 6.420000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G489500 chr3A 716963093 716967954 4861 True 2787.666667 4412 100.000000 1 4862 3 chr3A.!!$R3 4861
1 TraesCS3A01G489500 chr3A 717010179 717010996 817 True 566.000000 566 80.024000 994 1789 1 chr3A.!!$R1 795
2 TraesCS3A01G489500 chr3A 716946294 716948318 2024 True 422.500000 652 81.000000 938 3937 2 chr3A.!!$R2 2999
3 TraesCS3A01G489500 chr3A 717296899 717297973 1074 False 312.050000 538 86.668500 848 1737 2 chr3A.!!$F2 889
4 TraesCS3A01G489500 chr3D 587593030 587597575 4545 True 1360.000000 2495 94.341000 1 4668 4 chr3D.!!$R3 4667
5 TraesCS3A01G489500 chr3D 587647670 587648507 837 True 673.000000 673 82.045000 994 1789 1 chr3D.!!$R1 795
6 TraesCS3A01G489500 chr3D 587585743 587586648 905 True 377.600000 695 86.999500 936 1792 2 chr3D.!!$R2 856
7 TraesCS3A01G489500 chr3D 587745358 587746435 1077 False 320.500000 566 85.368000 848 1737 2 chr3D.!!$F2 889
8 TraesCS3A01G489500 chr3B 784897553 784901250 3697 True 1514.333333 2451 92.889667 448 4668 3 chr3B.!!$R3 4220
9 TraesCS3A01G489500 chr3B 784869789 784870599 810 True 623.000000 623 81.477000 1011 1792 1 chr3B.!!$R2 781
10 TraesCS3A01G489500 chr3B 785280735 785281492 757 False 525.000000 525 80.103000 998 1737 1 chr3B.!!$F1 739
11 TraesCS3A01G489500 chr3B 785039235 785043179 3944 True 430.000000 603 76.774000 994 3988 2 chr3B.!!$R4 2994
12 TraesCS3A01G489500 chrUn 323126512 323130137 3625 True 206.050000 350 92.672500 2385 2756 4 chrUn.!!$R1 371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 894 0.105709 AAGGGGGTGTTTGGTTCAGG 60.106 55.0 0.00 0.0 0.00 3.86 F
655 898 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.0 0.00 0.0 43.88 3.85 F
1654 2196 0.035725 TGCATCAAGGTGCTGGAGAG 60.036 55.0 6.88 0.0 45.27 3.20 F
3174 6098 0.761187 GCTAGGGTGCTGATCCATCA 59.239 55.0 0.00 0.0 35.16 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 2196 0.178068 TATGAGGCGAAGACCTTGGC 59.822 55.0 8.02 8.02 41.32 4.52 R
1933 2721 0.534412 CAGGGCTCGACAAGATCAGT 59.466 55.0 0.00 0.00 0.00 3.41 R
3499 6442 0.114954 TAGTCACGGGTGGTAGGGTT 59.885 55.0 0.00 0.00 0.00 4.11 R
4257 9024 0.393537 AGAAGCACTACAGGCCATGC 60.394 55.0 5.01 6.68 38.39 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.100409 TGATTTTGATATGGACACGTGTAGAA 58.900 34.615 23.44 10.60 0.00 2.10
85 86 5.451354 AGTTGGGAGTTTTTAGGTTTGCTA 58.549 37.500 0.00 0.00 0.00 3.49
98 99 4.704965 AGGTTTGCTAATTATCTCGGTCC 58.295 43.478 0.00 0.00 0.00 4.46
115 116 4.100498 TCGGTCCAATGAGAATTACTACCC 59.900 45.833 0.00 0.00 0.00 3.69
120 121 5.073144 TCCAATGAGAATTACTACCCCCATC 59.927 44.000 0.00 0.00 0.00 3.51
124 125 3.327439 AGAATTACTACCCCCATCCTGG 58.673 50.000 0.00 0.00 37.25 4.45
128 129 1.296002 ACTACCCCCATCCTGGTTTC 58.704 55.000 0.00 0.00 35.17 2.78
134 135 0.972471 CCCATCCTGGTTTCTTGGCC 60.972 60.000 0.00 0.00 35.17 5.36
137 138 1.442886 ATCCTGGTTTCTTGGCCCCA 61.443 55.000 0.00 0.00 0.00 4.96
150 151 1.821753 TGGCCCCATTCGTATTTTGTG 59.178 47.619 0.00 0.00 0.00 3.33
360 361 8.027771 ACAAAGGTAGTAGTTAAATCTCAGTCG 58.972 37.037 0.00 0.00 0.00 4.18
362 363 7.319142 AGGTAGTAGTTAAATCTCAGTCGAC 57.681 40.000 7.70 7.70 0.00 4.20
413 414 9.539194 AAGATCCATACAAGATTTTCTTTTCCT 57.461 29.630 0.00 0.00 33.78 3.36
420 421 7.043961 ACAAGATTTTCTTTTCCTTGACTCC 57.956 36.000 0.00 0.00 33.78 3.85
435 436 2.948979 TGACTCCGAAAACAAGCAACAT 59.051 40.909 0.00 0.00 0.00 2.71
436 437 3.380004 TGACTCCGAAAACAAGCAACATT 59.620 39.130 0.00 0.00 0.00 2.71
515 758 5.733226 TGCATGTATATGAACAACTTCGG 57.267 39.130 3.28 0.00 36.36 4.30
601 844 1.640917 ACCCTTTACCTCGCTCTCAA 58.359 50.000 0.00 0.00 0.00 3.02
636 879 1.481871 TTAGACGTCCAGGCTAAGGG 58.518 55.000 13.01 0.00 45.13 3.95
637 880 0.396695 TAGACGTCCAGGCTAAGGGG 60.397 60.000 13.01 0.00 37.56 4.79
638 881 2.687566 ACGTCCAGGCTAAGGGGG 60.688 66.667 0.00 0.00 0.00 5.40
639 882 2.687566 CGTCCAGGCTAAGGGGGT 60.688 66.667 0.00 0.00 0.00 4.95
640 883 2.998949 GTCCAGGCTAAGGGGGTG 59.001 66.667 0.00 0.00 0.00 4.61
641 884 1.923909 GTCCAGGCTAAGGGGGTGT 60.924 63.158 0.00 0.00 0.00 4.16
642 885 1.151677 TCCAGGCTAAGGGGGTGTT 60.152 57.895 0.00 0.00 0.00 3.32
643 886 0.774491 TCCAGGCTAAGGGGGTGTTT 60.774 55.000 0.00 0.00 0.00 2.83
644 887 0.611896 CCAGGCTAAGGGGGTGTTTG 60.612 60.000 0.00 0.00 0.00 2.93
645 888 0.611896 CAGGCTAAGGGGGTGTTTGG 60.612 60.000 0.00 0.00 0.00 3.28
646 889 1.071909 AGGCTAAGGGGGTGTTTGGT 61.072 55.000 0.00 0.00 0.00 3.67
647 890 0.178944 GGCTAAGGGGGTGTTTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
648 891 1.254026 GCTAAGGGGGTGTTTGGTTC 58.746 55.000 0.00 0.00 0.00 3.62
649 892 1.479757 GCTAAGGGGGTGTTTGGTTCA 60.480 52.381 0.00 0.00 0.00 3.18
650 893 2.514803 CTAAGGGGGTGTTTGGTTCAG 58.485 52.381 0.00 0.00 0.00 3.02
651 894 0.105709 AAGGGGGTGTTTGGTTCAGG 60.106 55.000 0.00 0.00 0.00 3.86
652 895 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
653 896 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
654 897 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
655 898 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
656 899 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
657 900 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
658 901 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
659 902 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
660 903 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
661 904 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
662 905 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
663 906 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
683 926 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
684 927 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
685 928 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
686 929 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
687 930 5.484290 CCCAGAGACTAGAAAAAGTCCCTAA 59.516 44.000 0.00 0.00 45.86 2.69
688 931 6.013639 CCCAGAGACTAGAAAAAGTCCCTAAA 60.014 42.308 0.00 0.00 45.86 1.85
689 932 7.450903 CCAGAGACTAGAAAAAGTCCCTAAAA 58.549 38.462 0.00 0.00 45.86 1.52
690 933 7.937394 CCAGAGACTAGAAAAAGTCCCTAAAAA 59.063 37.037 0.00 0.00 45.86 1.94
691 934 8.994170 CAGAGACTAGAAAAAGTCCCTAAAAAG 58.006 37.037 0.00 0.00 45.86 2.27
692 935 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
693 936 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
694 937 7.937942 AGACTAGAAAAAGTCCCTAAAAAGTCC 59.062 37.037 0.00 0.00 45.86 3.85
695 938 7.002879 ACTAGAAAAAGTCCCTAAAAAGTCCC 58.997 38.462 0.00 0.00 0.00 4.46
696 939 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
697 940 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
698 941 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
699 942 6.775234 AAAAGTCCCTAAAAAGTCCCTAGA 57.225 37.500 0.00 0.00 0.00 2.43
700 943 6.775234 AAAGTCCCTAAAAAGTCCCTAGAA 57.225 37.500 0.00 0.00 0.00 2.10
701 944 6.775234 AAGTCCCTAAAAAGTCCCTAGAAA 57.225 37.500 0.00 0.00 0.00 2.52
702 945 6.124316 AGTCCCTAAAAAGTCCCTAGAAAC 57.876 41.667 0.00 0.00 0.00 2.78
703 946 5.013913 AGTCCCTAAAAAGTCCCTAGAAACC 59.986 44.000 0.00 0.00 0.00 3.27
704 947 4.915194 TCCCTAAAAAGTCCCTAGAAACCA 59.085 41.667 0.00 0.00 0.00 3.67
705 948 5.373257 TCCCTAAAAAGTCCCTAGAAACCAA 59.627 40.000 0.00 0.00 0.00 3.67
706 949 6.072649 CCCTAAAAAGTCCCTAGAAACCAAA 58.927 40.000 0.00 0.00 0.00 3.28
707 950 6.015688 CCCTAAAAAGTCCCTAGAAACCAAAC 60.016 42.308 0.00 0.00 0.00 2.93
708 951 6.548251 CCTAAAAAGTCCCTAGAAACCAAACA 59.452 38.462 0.00 0.00 0.00 2.83
709 952 6.465439 AAAAAGTCCCTAGAAACCAAACAG 57.535 37.500 0.00 0.00 0.00 3.16
710 953 3.790089 AGTCCCTAGAAACCAAACAGG 57.210 47.619 0.00 0.00 45.67 4.00
711 954 3.323775 AGTCCCTAGAAACCAAACAGGA 58.676 45.455 0.00 0.00 41.22 3.86
712 955 3.328050 AGTCCCTAGAAACCAAACAGGAG 59.672 47.826 0.00 0.00 41.22 3.69
713 956 2.642807 TCCCTAGAAACCAAACAGGAGG 59.357 50.000 0.00 0.00 41.22 4.30
714 957 2.290960 CCCTAGAAACCAAACAGGAGGG 60.291 54.545 0.00 0.00 39.46 4.30
715 958 2.642807 CCTAGAAACCAAACAGGAGGGA 59.357 50.000 0.00 0.00 41.22 4.20
716 959 2.658807 AGAAACCAAACAGGAGGGAC 57.341 50.000 0.00 0.00 41.22 4.46
718 961 2.514160 AGAAACCAAACAGGAGGGACTT 59.486 45.455 0.00 0.00 41.55 3.01
719 962 3.052869 AGAAACCAAACAGGAGGGACTTT 60.053 43.478 0.00 0.00 41.55 2.66
720 963 3.398318 AACCAAACAGGAGGGACTTTT 57.602 42.857 0.00 0.00 41.55 2.27
721 964 3.398318 ACCAAACAGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
722 965 3.296854 ACCAAACAGGAGGGACTTTTTC 58.703 45.455 0.00 0.00 41.55 2.29
723 966 3.052869 ACCAAACAGGAGGGACTTTTTCT 60.053 43.478 0.00 0.00 41.55 2.52
724 967 4.167307 ACCAAACAGGAGGGACTTTTTCTA 59.833 41.667 0.00 0.00 41.55 2.10
725 968 4.519350 CCAAACAGGAGGGACTTTTTCTAC 59.481 45.833 0.00 0.00 41.55 2.59
726 969 5.130350 CAAACAGGAGGGACTTTTTCTACA 58.870 41.667 0.00 0.00 41.55 2.74
727 970 4.625607 ACAGGAGGGACTTTTTCTACAG 57.374 45.455 0.00 0.00 41.55 2.74
728 971 3.328050 ACAGGAGGGACTTTTTCTACAGG 59.672 47.826 0.00 0.00 41.55 4.00
729 972 2.913617 AGGAGGGACTTTTTCTACAGGG 59.086 50.000 0.00 0.00 41.55 4.45
730 973 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
731 974 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
732 975 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
733 976 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
734 977 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
735 978 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
736 979 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
737 980 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
738 981 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
742 985 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
743 986 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
744 987 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
745 988 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
746 989 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
747 990 8.337739 TCTACAGGGACTAGAAAAAGACTCTAT 58.662 37.037 0.00 0.00 36.02 1.98
748 991 7.800300 ACAGGGACTAGAAAAAGACTCTATT 57.200 36.000 0.00 0.00 36.02 1.73
749 992 7.616313 ACAGGGACTAGAAAAAGACTCTATTG 58.384 38.462 0.00 0.00 36.02 1.90
750 993 7.044798 CAGGGACTAGAAAAAGACTCTATTGG 58.955 42.308 0.00 0.00 36.02 3.16
751 994 6.731448 AGGGACTAGAAAAAGACTCTATTGGT 59.269 38.462 0.00 0.00 36.02 3.67
752 995 6.819146 GGGACTAGAAAAAGACTCTATTGGTG 59.181 42.308 0.00 0.00 0.00 4.17
753 996 7.310485 GGGACTAGAAAAAGACTCTATTGGTGA 60.310 40.741 0.00 0.00 0.00 4.02
754 997 7.762159 GGACTAGAAAAAGACTCTATTGGTGAG 59.238 40.741 0.00 0.00 37.55 3.51
755 998 8.196378 ACTAGAAAAAGACTCTATTGGTGAGT 57.804 34.615 0.00 0.00 46.17 3.41
793 1036 9.936759 AGTCTCTGGAATTAGAAAAAGTTCTAG 57.063 33.333 0.00 0.00 45.08 2.43
794 1037 9.157104 GTCTCTGGAATTAGAAAAAGTTCTAGG 57.843 37.037 0.00 0.00 45.08 3.02
795 1038 9.101325 TCTCTGGAATTAGAAAAAGTTCTAGGA 57.899 33.333 0.00 0.00 45.08 2.94
796 1039 9.157104 CTCTGGAATTAGAAAAAGTTCTAGGAC 57.843 37.037 0.00 0.00 45.08 3.85
797 1040 8.881262 TCTGGAATTAGAAAAAGTTCTAGGACT 58.119 33.333 0.00 0.00 45.08 3.85
798 1041 9.508642 CTGGAATTAGAAAAAGTTCTAGGACTT 57.491 33.333 10.89 10.89 45.08 3.01
799 1042 9.284968 TGGAATTAGAAAAAGTTCTAGGACTTG 57.715 33.333 17.40 0.00 45.08 3.16
800 1043 9.286170 GGAATTAGAAAAAGTTCTAGGACTTGT 57.714 33.333 17.40 9.14 45.08 3.16
802 1045 9.847224 AATTAGAAAAAGTTCTAGGACTTGTGA 57.153 29.630 17.40 0.00 45.08 3.58
803 1046 9.847224 ATTAGAAAAAGTTCTAGGACTTGTGAA 57.153 29.630 17.40 7.79 45.08 3.18
804 1047 7.555306 AGAAAAAGTTCTAGGACTTGTGAAC 57.445 36.000 17.40 7.47 42.53 3.18
805 1048 6.542735 AGAAAAAGTTCTAGGACTTGTGAACC 59.457 38.462 17.40 3.12 42.53 3.62
806 1049 5.367945 AAAGTTCTAGGACTTGTGAACCA 57.632 39.130 17.40 0.00 39.68 3.67
807 1050 5.367945 AAGTTCTAGGACTTGTGAACCAA 57.632 39.130 15.98 0.00 38.39 3.67
808 1051 5.367945 AGTTCTAGGACTTGTGAACCAAA 57.632 39.130 0.00 0.00 39.45 3.28
809 1052 5.123936 AGTTCTAGGACTTGTGAACCAAAC 58.876 41.667 0.00 0.00 39.45 2.93
810 1053 4.764050 TCTAGGACTTGTGAACCAAACA 57.236 40.909 0.00 0.00 31.20 2.83
811 1054 4.448210 TCTAGGACTTGTGAACCAAACAC 58.552 43.478 0.00 0.00 38.55 3.32
812 1055 2.375146 AGGACTTGTGAACCAAACACC 58.625 47.619 0.00 0.00 37.45 4.16
813 1056 2.096248 GGACTTGTGAACCAAACACCA 58.904 47.619 0.00 0.00 37.45 4.17
814 1057 2.159296 GGACTTGTGAACCAAACACCAC 60.159 50.000 0.00 0.00 37.45 4.16
815 1058 1.822371 ACTTGTGAACCAAACACCACC 59.178 47.619 0.00 0.00 37.45 4.61
816 1059 2.099405 CTTGTGAACCAAACACCACCT 58.901 47.619 0.00 0.00 37.45 4.00
817 1060 3.283751 CTTGTGAACCAAACACCACCTA 58.716 45.455 0.00 0.00 37.45 3.08
818 1061 3.367646 TGTGAACCAAACACCACCTAA 57.632 42.857 0.00 0.00 37.45 2.69
828 1071 5.301805 CCAAACACCACCTAAATCAGTTCTT 59.698 40.000 0.00 0.00 0.00 2.52
841 1087 4.073293 TCAGTTCTTTGGAGTTCTCACC 57.927 45.455 2.24 0.00 0.00 4.02
932 1267 2.622452 GCCTACTACCACACTAGGTCCA 60.622 54.545 0.00 0.00 42.06 4.02
964 1370 3.005261 CCACCATCATCTCTAACCTCTCG 59.995 52.174 0.00 0.00 0.00 4.04
1054 1475 4.099403 CGAGCAGCATGTCGTCAT 57.901 55.556 0.00 0.00 39.31 3.06
1191 1663 4.899239 GGCGGCTCCGGATCACAG 62.899 72.222 3.57 0.00 40.19 3.66
1361 1884 9.520515 TGAGCTATGTACATGTGAGATATTCTA 57.479 33.333 18.81 0.00 0.00 2.10
1607 2149 1.127567 AGGTCAGCCTGGTAAGCACA 61.128 55.000 0.00 0.00 45.05 4.57
1654 2196 0.035725 TGCATCAAGGTGCTGGAGAG 60.036 55.000 6.88 0.00 45.27 3.20
1801 2587 8.798859 ATGATTTGATCTTAACAAGTACTGCT 57.201 30.769 0.00 0.00 0.00 4.24
2040 2859 9.051027 CGACATTGTAGCAAGTTAGTTAATTTG 57.949 33.333 3.56 3.56 36.39 2.32
2318 3326 3.678072 CACAGTATGACGAACCGTGAATT 59.322 43.478 0.00 0.00 41.37 2.17
2323 3331 2.052891 TGACGAACCGTGAATTGTACG 58.947 47.619 0.00 5.16 41.37 3.67
2465 3505 8.570096 AATTGCGACATCAAATATGATCAAAG 57.430 30.769 0.00 0.00 44.53 2.77
2466 3506 6.063640 TGCGACATCAAATATGATCAAAGG 57.936 37.500 0.00 0.00 44.53 3.11
2517 3557 8.140112 ACAAAATATCAAGTAGAGAGAGGTGT 57.860 34.615 0.00 0.00 0.00 4.16
2520 3560 8.824756 AAATATCAAGTAGAGAGAGGTGTACA 57.175 34.615 0.00 0.00 0.00 2.90
2522 3562 4.001652 TCAAGTAGAGAGAGGTGTACACG 58.998 47.826 19.41 1.44 0.00 4.49
2557 3598 5.574891 TTCAGTGCTAAAAGTGCTCAAAA 57.425 34.783 0.00 0.00 0.00 2.44
2558 3599 4.920376 TCAGTGCTAAAAGTGCTCAAAAC 58.080 39.130 0.00 0.00 0.00 2.43
2562 3603 5.807011 AGTGCTAAAAGTGCTCAAAACTTTG 59.193 36.000 2.56 0.00 44.93 2.77
2563 3604 5.804979 GTGCTAAAAGTGCTCAAAACTTTGA 59.195 36.000 4.87 4.87 44.93 2.69
2574 3615 4.290155 TCAAAACTTTGAGCGCTGAAATC 58.710 39.130 22.21 4.44 41.88 2.17
2575 3616 2.997485 AACTTTGAGCGCTGAAATCC 57.003 45.000 22.21 3.33 0.00 3.01
2587 3628 4.084900 GCGCTGAAATCCTTTTCTTGTTTG 60.085 41.667 0.00 0.00 41.54 2.93
2592 3633 5.363580 TGAAATCCTTTTCTTGTTTGGAGCT 59.636 36.000 0.00 0.00 41.54 4.09
2597 3638 2.169832 TTCTTGTTTGGAGCTCCTCG 57.830 50.000 32.28 14.20 36.82 4.63
2642 3683 3.020274 TGCAAGCACCTACAAAGTTTGA 58.980 40.909 22.23 5.24 0.00 2.69
2658 3699 7.962918 ACAAAGTTTGACTATATTTGATGTCGC 59.037 33.333 22.23 0.00 35.40 5.19
2665 3706 8.039603 TGACTATATTTGATGTCGCAAAGTTT 57.960 30.769 0.00 0.00 40.68 2.66
2669 3710 4.891627 TTTGATGTCGCAAAGTTTCAGA 57.108 36.364 0.00 0.00 33.16 3.27
2670 3711 5.437289 TTTGATGTCGCAAAGTTTCAGAT 57.563 34.783 0.00 0.00 33.16 2.90
2671 3712 5.437289 TTGATGTCGCAAAGTTTCAGATT 57.563 34.783 0.00 0.00 0.00 2.40
2675 3716 5.947503 TGTCGCAAAGTTTCAGATTTTTG 57.052 34.783 0.00 0.00 34.51 2.44
2678 3719 6.367422 TGTCGCAAAGTTTCAGATTTTTGTTT 59.633 30.769 0.00 0.00 34.04 2.83
2679 3720 6.894517 GTCGCAAAGTTTCAGATTTTTGTTTC 59.105 34.615 0.00 0.00 34.04 2.78
2742 3790 2.031120 CTGCACCCAGGAGTTGAAAAA 58.969 47.619 0.00 0.00 35.38 1.94
2745 3793 2.223805 GCACCCAGGAGTTGAAAAACTG 60.224 50.000 0.00 0.00 32.22 3.16
2753 3801 5.300286 CAGGAGTTGAAAAACTGGTCTCATT 59.700 40.000 0.00 0.00 32.22 2.57
2755 3803 5.979517 GGAGTTGAAAAACTGGTCTCATTTG 59.020 40.000 0.00 0.00 32.22 2.32
2756 3804 6.405842 GGAGTTGAAAAACTGGTCTCATTTGT 60.406 38.462 0.00 0.00 32.22 2.83
2758 3806 8.237811 AGTTGAAAAACTGGTCTCATTTGTAT 57.762 30.769 0.00 0.00 0.00 2.29
2760 3808 9.959749 GTTGAAAAACTGGTCTCATTTGTATAA 57.040 29.630 0.00 0.00 0.00 0.98
2774 3843 9.935682 CTCATTTGTATAATACACCATGTCAAC 57.064 33.333 0.00 0.00 38.63 3.18
2813 3911 5.309543 TCTCTCCTCCACTAAAATGGTTCAA 59.690 40.000 0.00 0.00 40.95 2.69
2846 3948 6.369890 GCATATGAGTTGAAAGTGAAGTGAGA 59.630 38.462 6.97 0.00 0.00 3.27
2894 3996 9.920946 ATATAATACAGATTCCACAAAACCACT 57.079 29.630 0.00 0.00 0.00 4.00
2899 4001 4.097741 CAGATTCCACAAAACCACTGTTCA 59.902 41.667 0.00 0.00 32.15 3.18
2902 4016 1.202405 CCACAAAACCACTGTTCAGGC 60.202 52.381 4.82 0.00 32.15 4.85
2952 5494 5.789521 TGAACTATGAAGACGAACATTCCA 58.210 37.500 0.00 0.00 0.00 3.53
2995 5537 4.656041 CTCGTCAAAGAGGATGAATTTGC 58.344 43.478 0.00 0.00 34.63 3.68
3012 5554 6.258287 TGAATTTGCTGTGTTTTGATCCTTTG 59.742 34.615 0.00 0.00 0.00 2.77
3016 5558 5.108517 TGCTGTGTTTTGATCCTTTGTTTC 58.891 37.500 0.00 0.00 0.00 2.78
3030 5953 4.261825 CCTTTGTTTCGTCTTTTGGGCATA 60.262 41.667 0.00 0.00 0.00 3.14
3031 5954 5.461032 TTTGTTTCGTCTTTTGGGCATAT 57.539 34.783 0.00 0.00 0.00 1.78
3080 6003 6.803642 AGAATTTTGCTTCCTTGCATATCTC 58.196 36.000 0.00 0.00 42.96 2.75
3164 6088 2.325082 CGTTGGTGTGCTAGGGTGC 61.325 63.158 0.00 0.00 0.00 5.01
3174 6098 0.761187 GCTAGGGTGCTGATCCATCA 59.239 55.000 0.00 0.00 35.16 3.07
3222 6147 9.139174 CAATTGGTATTGGTTTTTATCTCACAC 57.861 33.333 0.00 0.00 37.97 3.82
3239 6164 1.152631 ACCCTTTCAACCCCAACGG 60.153 57.895 0.00 0.00 37.81 4.44
3259 6190 3.049344 GGAAGGGGGAGTCATCATACTT 58.951 50.000 0.00 0.00 0.00 2.24
3269 6200 6.000219 GGAGTCATCATACTTGTGCCAATAT 59.000 40.000 0.00 0.00 0.00 1.28
3307 6238 7.898918 AGATCTAGCTTGTCGTATCTAGACTA 58.101 38.462 0.00 0.00 39.92 2.59
3355 6286 9.897744 ATAAATATGCCATCATAAAACACGAAG 57.102 29.630 0.00 0.00 38.55 3.79
3380 6311 4.973396 TCTCGAAATGACATTGTGATTGC 58.027 39.130 0.34 0.00 0.00 3.56
3381 6312 4.455190 TCTCGAAATGACATTGTGATTGCA 59.545 37.500 7.60 0.00 0.00 4.08
3384 6315 4.259650 CGAAATGACATTGTGATTGCATGC 60.260 41.667 11.82 11.82 0.00 4.06
3475 6418 2.575532 GATGCAATCGAAGGGATGGAA 58.424 47.619 0.00 0.00 34.93 3.53
3499 6442 2.144450 TCTCCTACCCTCTAGGCATCA 58.856 52.381 0.00 0.00 40.58 3.07
3520 6463 1.570501 ACCCTACCACCCGTGACTATA 59.429 52.381 0.00 0.00 0.00 1.31
3534 6477 2.691526 TGACTATAAGTAGCACCGGTGG 59.308 50.000 34.58 17.35 0.00 4.61
3639 6588 6.940714 AGTAACGTTACAGATGTGTCAAAAC 58.059 36.000 33.43 9.51 38.19 2.43
3645 6594 7.853929 ACGTTACAGATGTGTCAAAACAAATAC 59.146 33.333 0.00 0.00 33.26 1.89
3647 6596 6.707440 ACAGATGTGTCAAAACAAATACCA 57.293 33.333 0.00 0.00 33.26 3.25
3671 6624 7.304735 CAAATTACTAACTGCAAGCATGTGTA 58.695 34.615 0.00 0.00 37.60 2.90
3713 8309 2.094078 CCAACTTACGGGTGACGGAATA 60.094 50.000 0.00 0.00 45.98 1.75
3804 8569 0.037046 GCAAGGAGGGCCAAACATTG 60.037 55.000 6.18 11.94 36.29 2.82
3816 8581 3.972502 GCCAAACATTGTGTAACGAACTC 59.027 43.478 0.00 0.00 42.39 3.01
3868 8633 6.039047 ACAACATCTGCATCATTAGTGGATTC 59.961 38.462 0.00 0.00 0.00 2.52
3902 8667 6.564709 ATGGTGCATGTCATCATACATAAC 57.435 37.500 12.38 0.00 44.38 1.89
3938 8703 9.470399 AATCAAAATGCATGCCATAGATATAGA 57.530 29.630 16.68 0.69 32.67 1.98
3941 8706 8.517056 CAAAATGCATGCCATAGATATAGAACA 58.483 33.333 16.68 0.00 32.67 3.18
4246 9013 5.729510 TGTGTGCTTACTGCTTGTATATCA 58.270 37.500 0.00 0.00 43.37 2.15
4253 9020 7.867909 TGCTTACTGCTTGTATATCAGTGTATC 59.132 37.037 4.56 0.00 40.80 2.24
4254 9021 8.085296 GCTTACTGCTTGTATATCAGTGTATCT 58.915 37.037 4.56 0.00 40.80 1.98
4255 9022 9.404348 CTTACTGCTTGTATATCAGTGTATCTG 57.596 37.037 4.56 0.00 44.85 2.90
4256 9023 6.753180 ACTGCTTGTATATCAGTGTATCTGG 58.247 40.000 0.00 0.00 43.76 3.86
4257 9024 6.101650 TGCTTGTATATCAGTGTATCTGGG 57.898 41.667 0.00 0.00 43.76 4.45
4258 9025 4.932200 GCTTGTATATCAGTGTATCTGGGC 59.068 45.833 0.00 0.00 43.76 5.36
4259 9026 5.511373 GCTTGTATATCAGTGTATCTGGGCA 60.511 44.000 0.00 0.00 43.76 5.36
4260 9027 6.686484 TTGTATATCAGTGTATCTGGGCAT 57.314 37.500 0.00 0.00 43.76 4.40
4300 9067 2.404923 TGTTCGTGTTCAGGTTTGGA 57.595 45.000 0.00 0.00 0.00 3.53
4302 9069 3.082548 TGTTCGTGTTCAGGTTTGGAAA 58.917 40.909 0.00 0.00 0.00 3.13
4308 9075 5.105716 TCGTGTTCAGGTTTGGAAATTTTCA 60.106 36.000 11.09 0.00 0.00 2.69
4486 9280 3.264193 TGTGTCTGGCCTATCAATGAACT 59.736 43.478 3.32 0.00 0.00 3.01
4504 9298 6.055231 TGAACTGAACCGAGTTTGTAATTG 57.945 37.500 0.00 0.00 36.27 2.32
4510 9304 5.918011 TGAACCGAGTTTGTAATTGCATTTC 59.082 36.000 0.00 0.00 0.00 2.17
4558 9352 4.281435 TCACATAAGTTCAGACGTACCCAA 59.719 41.667 0.00 0.00 0.00 4.12
4559 9353 4.992319 CACATAAGTTCAGACGTACCCAAA 59.008 41.667 0.00 0.00 0.00 3.28
4562 9356 6.204108 ACATAAGTTCAGACGTACCCAAAAAG 59.796 38.462 0.00 0.00 0.00 2.27
4579 9373 8.197439 ACCCAAAAAGAAAACATAAGTTCAGAG 58.803 33.333 0.00 0.00 36.84 3.35
4812 9609 5.904362 ATATGACACTTTTCTTTGAGGGC 57.096 39.130 0.00 0.00 0.00 5.19
4813 9610 3.297134 TGACACTTTTCTTTGAGGGCT 57.703 42.857 0.00 0.00 0.00 5.19
4817 9614 3.225940 CACTTTTCTTTGAGGGCTTCCT 58.774 45.455 0.00 0.00 45.23 3.36
4818 9615 4.141251 ACACTTTTCTTTGAGGGCTTCCTA 60.141 41.667 0.00 0.00 41.93 2.94
4819 9616 5.012893 CACTTTTCTTTGAGGGCTTCCTAT 58.987 41.667 0.00 0.00 41.93 2.57
4820 9617 6.180472 CACTTTTCTTTGAGGGCTTCCTATA 58.820 40.000 0.00 0.00 41.93 1.31
4821 9618 6.830838 CACTTTTCTTTGAGGGCTTCCTATAT 59.169 38.462 0.00 0.00 41.93 0.86
4822 9619 6.830838 ACTTTTCTTTGAGGGCTTCCTATATG 59.169 38.462 0.00 0.00 41.93 1.78
4823 9620 6.575244 TTTCTTTGAGGGCTTCCTATATGA 57.425 37.500 0.00 0.00 41.93 2.15
4825 9622 4.039245 TCTTTGAGGGCTTCCTATATGACG 59.961 45.833 0.00 0.00 41.93 4.35
4826 9623 1.618837 TGAGGGCTTCCTATATGACGC 59.381 52.381 0.00 0.00 41.93 5.19
4827 9624 1.896465 GAGGGCTTCCTATATGACGCT 59.104 52.381 6.48 0.00 41.93 5.07
4828 9625 2.300437 GAGGGCTTCCTATATGACGCTT 59.700 50.000 6.48 0.00 41.93 4.68
4829 9626 3.507411 AGGGCTTCCTATATGACGCTTA 58.493 45.455 6.48 0.00 39.59 3.09
4832 9629 5.720041 AGGGCTTCCTATATGACGCTTATTA 59.280 40.000 6.48 0.00 39.59 0.98
4833 9630 6.384305 AGGGCTTCCTATATGACGCTTATTAT 59.616 38.462 6.48 0.00 39.59 1.28
4834 9631 6.480320 GGGCTTCCTATATGACGCTTATTATG 59.520 42.308 6.48 0.00 30.82 1.90
4835 9632 7.042335 GGCTTCCTATATGACGCTTATTATGT 58.958 38.462 6.48 0.00 30.82 2.29
4836 9633 7.010552 GGCTTCCTATATGACGCTTATTATGTG 59.989 40.741 6.48 0.00 30.82 3.21
4837 9634 7.545965 GCTTCCTATATGACGCTTATTATGTGT 59.454 37.037 0.13 0.00 0.00 3.72
4840 9637 9.850628 TCCTATATGACGCTTATTATGTGTAAC 57.149 33.333 0.00 0.00 37.35 2.50
4841 9638 9.856488 CCTATATGACGCTTATTATGTGTAACT 57.144 33.333 0.00 0.00 38.04 2.24
4845 9642 7.056002 TGACGCTTATTATGTGTAACTGTTG 57.944 36.000 2.69 0.00 38.04 3.33
4846 9643 5.864986 ACGCTTATTATGTGTAACTGTTGC 58.135 37.500 2.69 2.00 38.04 4.17
4848 9645 5.959527 CGCTTATTATGTGTAACTGTTGCTG 59.040 40.000 9.94 0.00 38.04 4.41
4849 9646 6.258160 GCTTATTATGTGTAACTGTTGCTGG 58.742 40.000 9.94 0.00 38.04 4.85
4850 9647 6.093495 GCTTATTATGTGTAACTGTTGCTGGA 59.907 38.462 9.94 0.00 38.04 3.86
4851 9648 7.201732 GCTTATTATGTGTAACTGTTGCTGGAT 60.202 37.037 9.94 2.49 38.04 3.41
4852 9649 8.574251 TTATTATGTGTAACTGTTGCTGGATT 57.426 30.769 9.94 0.00 38.04 3.01
4853 9650 4.771590 ATGTGTAACTGTTGCTGGATTG 57.228 40.909 9.94 0.00 38.04 2.67
4854 9651 2.293122 TGTGTAACTGTTGCTGGATTGC 59.707 45.455 9.94 0.00 38.04 3.56
4855 9652 2.293122 GTGTAACTGTTGCTGGATTGCA 59.707 45.455 9.94 0.00 41.65 4.08
4856 9653 2.293122 TGTAACTGTTGCTGGATTGCAC 59.707 45.455 9.94 0.00 43.20 4.57
4857 9654 0.311790 AACTGTTGCTGGATTGCACG 59.688 50.000 0.00 0.00 43.20 5.34
4858 9655 0.534877 ACTGTTGCTGGATTGCACGA 60.535 50.000 0.00 0.00 43.20 4.35
4859 9656 0.167470 CTGTTGCTGGATTGCACGAG 59.833 55.000 0.00 0.00 43.20 4.18
4860 9657 0.534877 TGTTGCTGGATTGCACGAGT 60.535 50.000 0.00 0.00 43.20 4.18
4861 9658 1.270571 TGTTGCTGGATTGCACGAGTA 60.271 47.619 0.00 0.00 43.20 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.640357 GGTTCTACACGTGTCCATATCAAAA 59.360 40.000 27.16 1.94 0.00 2.44
25 26 8.986991 ACTCTAATCATCTCAATGAACTAAGGT 58.013 33.333 0.00 0.00 44.85 3.50
85 86 8.432805 AGTAATTCTCATTGGACCGAGATAATT 58.567 33.333 0.00 4.57 38.06 1.40
98 99 5.073691 AGGATGGGGGTAGTAATTCTCATTG 59.926 44.000 0.00 0.00 0.00 2.82
120 121 0.545071 AATGGGGCCAAGAAACCAGG 60.545 55.000 4.39 0.00 36.27 4.45
124 125 1.828979 TACGAATGGGGCCAAGAAAC 58.171 50.000 4.39 0.00 0.00 2.78
128 129 2.495669 ACAAAATACGAATGGGGCCAAG 59.504 45.455 4.39 0.00 0.00 3.61
134 135 7.650834 AATTTTGACACAAAATACGAATGGG 57.349 32.000 18.37 0.00 30.38 4.00
324 325 9.933723 TTAACTACTACCTTTGTCCTGATTTAC 57.066 33.333 0.00 0.00 0.00 2.01
330 331 8.311836 TGAGATTTAACTACTACCTTTGTCCTG 58.688 37.037 0.00 0.00 0.00 3.86
360 361 3.119101 ACAGGTCAATGATACTCGGTGTC 60.119 47.826 0.00 0.00 0.00 3.67
362 363 3.119137 TGACAGGTCAATGATACTCGGTG 60.119 47.826 0.00 0.00 36.53 4.94
405 406 4.519213 TGTTTTCGGAGTCAAGGAAAAGA 58.481 39.130 13.15 10.65 39.51 2.52
406 407 4.893424 TGTTTTCGGAGTCAAGGAAAAG 57.107 40.909 13.15 0.00 39.51 2.27
413 414 2.750166 TGTTGCTTGTTTTCGGAGTCAA 59.250 40.909 0.00 0.00 0.00 3.18
515 758 8.694394 GCACTCAATTAACTCTTGTCAATTTTC 58.306 33.333 0.00 0.00 0.00 2.29
601 844 5.844004 ACGTCTAAGTCACAGAGAACATTT 58.156 37.500 0.00 0.00 0.00 2.32
634 877 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
635 878 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
636 879 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
637 880 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
638 881 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
639 882 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
640 883 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
661 904 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
662 905 3.838903 GGGACTTTTTCTAGTCTCTGGGA 59.161 47.826 0.00 0.00 41.50 4.37
663 906 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
667 910 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
668 911 7.937942 GGACTTTTTAGGGACTTTTTCTAGTCT 59.062 37.037 0.00 0.00 43.26 3.24
669 912 7.174599 GGGACTTTTTAGGGACTTTTTCTAGTC 59.825 40.741 0.00 0.00 43.05 2.59
670 913 7.002879 GGGACTTTTTAGGGACTTTTTCTAGT 58.997 38.462 0.00 0.00 41.75 2.57
671 914 7.232188 AGGGACTTTTTAGGGACTTTTTCTAG 58.768 38.462 0.00 0.00 34.75 2.43
672 915 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
673 916 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
674 917 7.229308 TCTAGGGACTTTTTAGGGACTTTTTC 58.771 38.462 0.00 0.00 39.49 2.29
675 918 7.157947 TCTAGGGACTTTTTAGGGACTTTTT 57.842 36.000 0.00 0.00 39.49 1.94
676 919 6.775234 TCTAGGGACTTTTTAGGGACTTTT 57.225 37.500 0.00 0.00 39.49 2.27
677 920 6.775234 TTCTAGGGACTTTTTAGGGACTTT 57.225 37.500 0.00 0.00 39.49 2.66
678 921 6.466904 GGTTTCTAGGGACTTTTTAGGGACTT 60.467 42.308 0.00 0.00 39.49 3.01
679 922 5.013913 GGTTTCTAGGGACTTTTTAGGGACT 59.986 44.000 0.00 0.00 41.75 3.85
680 923 5.221986 TGGTTTCTAGGGACTTTTTAGGGAC 60.222 44.000 0.00 0.00 41.75 4.46
681 924 4.915194 TGGTTTCTAGGGACTTTTTAGGGA 59.085 41.667 0.00 0.00 41.75 4.20
682 925 5.251182 TGGTTTCTAGGGACTTTTTAGGG 57.749 43.478 0.00 0.00 41.75 3.53
683 926 6.548251 TGTTTGGTTTCTAGGGACTTTTTAGG 59.452 38.462 0.00 0.00 41.75 2.69
684 927 7.255486 CCTGTTTGGTTTCTAGGGACTTTTTAG 60.255 40.741 0.00 0.00 41.75 1.85
685 928 6.548251 CCTGTTTGGTTTCTAGGGACTTTTTA 59.452 38.462 0.00 0.00 41.75 1.52
686 929 5.362717 CCTGTTTGGTTTCTAGGGACTTTTT 59.637 40.000 0.00 0.00 41.75 1.94
687 930 4.893524 CCTGTTTGGTTTCTAGGGACTTTT 59.106 41.667 0.00 0.00 41.75 2.27
688 931 4.167307 TCCTGTTTGGTTTCTAGGGACTTT 59.833 41.667 0.00 0.00 37.15 2.66
689 932 3.720002 TCCTGTTTGGTTTCTAGGGACTT 59.280 43.478 0.00 0.00 37.15 3.01
690 933 3.323775 TCCTGTTTGGTTTCTAGGGACT 58.676 45.455 0.00 0.00 38.94 3.85
691 934 3.559384 CCTCCTGTTTGGTTTCTAGGGAC 60.559 52.174 0.00 0.00 37.07 4.46
692 935 2.642807 CCTCCTGTTTGGTTTCTAGGGA 59.357 50.000 0.00 0.00 37.07 4.20
693 936 2.290960 CCCTCCTGTTTGGTTTCTAGGG 60.291 54.545 0.00 0.00 38.25 3.53
694 937 2.642807 TCCCTCCTGTTTGGTTTCTAGG 59.357 50.000 0.00 0.00 37.07 3.02
695 938 3.328050 AGTCCCTCCTGTTTGGTTTCTAG 59.672 47.826 0.00 0.00 37.07 2.43
696 939 3.323775 AGTCCCTCCTGTTTGGTTTCTA 58.676 45.455 0.00 0.00 37.07 2.10
697 940 2.136026 AGTCCCTCCTGTTTGGTTTCT 58.864 47.619 0.00 0.00 37.07 2.52
698 941 2.658807 AGTCCCTCCTGTTTGGTTTC 57.341 50.000 0.00 0.00 37.07 2.78
699 942 3.398318 AAAGTCCCTCCTGTTTGGTTT 57.602 42.857 0.00 0.00 37.07 3.27
700 943 3.398318 AAAAGTCCCTCCTGTTTGGTT 57.602 42.857 0.00 0.00 37.07 3.67
701 944 3.052869 AGAAAAAGTCCCTCCTGTTTGGT 60.053 43.478 0.00 0.00 37.07 3.67
702 945 3.566351 AGAAAAAGTCCCTCCTGTTTGG 58.434 45.455 0.00 0.00 37.10 3.28
703 946 5.130350 TGTAGAAAAAGTCCCTCCTGTTTG 58.870 41.667 0.00 0.00 0.00 2.93
704 947 5.377478 CTGTAGAAAAAGTCCCTCCTGTTT 58.623 41.667 0.00 0.00 0.00 2.83
705 948 4.202472 CCTGTAGAAAAAGTCCCTCCTGTT 60.202 45.833 0.00 0.00 0.00 3.16
706 949 3.328050 CCTGTAGAAAAAGTCCCTCCTGT 59.672 47.826 0.00 0.00 0.00 4.00
707 950 3.307762 CCCTGTAGAAAAAGTCCCTCCTG 60.308 52.174 0.00 0.00 0.00 3.86
708 951 2.913617 CCCTGTAGAAAAAGTCCCTCCT 59.086 50.000 0.00 0.00 0.00 3.69
709 952 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
710 953 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
711 954 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
712 955 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
713 956 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
719 962 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
720 963 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
721 964 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
722 965 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
723 966 8.750298 CAATAGAGTCTTTTTCTAGTCCCTGTA 58.250 37.037 0.00 0.00 31.17 2.74
724 967 7.310734 CCAATAGAGTCTTTTTCTAGTCCCTGT 60.311 40.741 0.00 0.00 31.17 4.00
725 968 7.044798 CCAATAGAGTCTTTTTCTAGTCCCTG 58.955 42.308 0.00 0.00 31.17 4.45
726 969 6.731448 ACCAATAGAGTCTTTTTCTAGTCCCT 59.269 38.462 0.00 0.00 31.17 4.20
727 970 6.819146 CACCAATAGAGTCTTTTTCTAGTCCC 59.181 42.308 0.00 0.00 31.17 4.46
728 971 7.612677 TCACCAATAGAGTCTTTTTCTAGTCC 58.387 38.462 0.00 0.00 31.17 3.85
729 972 8.308207 ACTCACCAATAGAGTCTTTTTCTAGTC 58.692 37.037 0.00 0.00 42.40 2.59
730 973 8.196378 ACTCACCAATAGAGTCTTTTTCTAGT 57.804 34.615 0.00 0.00 42.40 2.57
767 1010 9.936759 CTAGAACTTTTTCTAATTCCAGAGACT 57.063 33.333 0.00 0.00 42.61 3.24
768 1011 9.157104 CCTAGAACTTTTTCTAATTCCAGAGAC 57.843 37.037 0.00 0.00 42.61 3.36
769 1012 9.101325 TCCTAGAACTTTTTCTAATTCCAGAGA 57.899 33.333 0.00 0.00 42.61 3.10
770 1013 9.157104 GTCCTAGAACTTTTTCTAATTCCAGAG 57.843 37.037 0.00 0.00 42.61 3.35
771 1014 8.881262 AGTCCTAGAACTTTTTCTAATTCCAGA 58.119 33.333 0.00 0.00 42.61 3.86
772 1015 9.508642 AAGTCCTAGAACTTTTTCTAATTCCAG 57.491 33.333 0.00 0.00 42.61 3.86
773 1016 9.284968 CAAGTCCTAGAACTTTTTCTAATTCCA 57.715 33.333 0.00 0.00 42.61 3.53
774 1017 9.286170 ACAAGTCCTAGAACTTTTTCTAATTCC 57.714 33.333 0.00 0.00 42.61 3.01
776 1019 9.847224 TCACAAGTCCTAGAACTTTTTCTAATT 57.153 29.630 0.00 0.00 42.61 1.40
777 1020 9.847224 TTCACAAGTCCTAGAACTTTTTCTAAT 57.153 29.630 0.00 0.00 42.61 1.73
778 1021 9.106070 GTTCACAAGTCCTAGAACTTTTTCTAA 57.894 33.333 0.00 0.00 42.61 2.10
779 1022 7.713942 GGTTCACAAGTCCTAGAACTTTTTCTA 59.286 37.037 0.00 0.00 42.44 2.10
780 1023 6.542735 GGTTCACAAGTCCTAGAACTTTTTCT 59.457 38.462 0.00 0.00 44.70 2.52
781 1024 6.317893 TGGTTCACAAGTCCTAGAACTTTTTC 59.682 38.462 0.00 0.00 40.05 2.29
782 1025 6.184789 TGGTTCACAAGTCCTAGAACTTTTT 58.815 36.000 0.00 0.00 40.05 1.94
783 1026 5.751586 TGGTTCACAAGTCCTAGAACTTTT 58.248 37.500 0.00 0.00 40.05 2.27
784 1027 5.367945 TGGTTCACAAGTCCTAGAACTTT 57.632 39.130 0.00 0.00 40.05 2.66
785 1028 5.367945 TTGGTTCACAAGTCCTAGAACTT 57.632 39.130 0.00 0.00 40.05 2.66
786 1029 5.123936 GTTTGGTTCACAAGTCCTAGAACT 58.876 41.667 0.00 0.00 40.82 3.01
787 1030 4.879545 TGTTTGGTTCACAAGTCCTAGAAC 59.120 41.667 0.00 0.00 40.82 3.01
788 1031 4.879545 GTGTTTGGTTCACAAGTCCTAGAA 59.120 41.667 0.00 0.00 40.82 2.10
789 1032 4.448210 GTGTTTGGTTCACAAGTCCTAGA 58.552 43.478 0.00 0.00 40.82 2.43
790 1033 3.564225 GGTGTTTGGTTCACAAGTCCTAG 59.436 47.826 0.00 0.00 40.82 3.02
791 1034 3.054287 TGGTGTTTGGTTCACAAGTCCTA 60.054 43.478 0.00 0.00 40.82 2.94
792 1035 2.291282 TGGTGTTTGGTTCACAAGTCCT 60.291 45.455 0.00 0.00 40.82 3.85
793 1036 2.096248 TGGTGTTTGGTTCACAAGTCC 58.904 47.619 0.00 0.00 40.82 3.85
794 1037 2.159296 GGTGGTGTTTGGTTCACAAGTC 60.159 50.000 0.00 0.00 40.82 3.01
795 1038 1.822371 GGTGGTGTTTGGTTCACAAGT 59.178 47.619 0.00 0.00 40.82 3.16
796 1039 2.099405 AGGTGGTGTTTGGTTCACAAG 58.901 47.619 0.00 0.00 40.82 3.16
797 1040 2.223803 AGGTGGTGTTTGGTTCACAA 57.776 45.000 0.00 0.00 37.52 3.33
798 1041 3.367646 TTAGGTGGTGTTTGGTTCACA 57.632 42.857 0.00 0.00 37.52 3.58
799 1042 4.339814 TGATTTAGGTGGTGTTTGGTTCAC 59.660 41.667 0.00 0.00 35.36 3.18
800 1043 4.537751 TGATTTAGGTGGTGTTTGGTTCA 58.462 39.130 0.00 0.00 0.00 3.18
801 1044 4.583073 ACTGATTTAGGTGGTGTTTGGTTC 59.417 41.667 0.00 0.00 0.00 3.62
802 1045 4.542697 ACTGATTTAGGTGGTGTTTGGTT 58.457 39.130 0.00 0.00 0.00 3.67
803 1046 4.178956 ACTGATTTAGGTGGTGTTTGGT 57.821 40.909 0.00 0.00 0.00 3.67
804 1047 4.827284 AGAACTGATTTAGGTGGTGTTTGG 59.173 41.667 0.00 0.00 0.00 3.28
805 1048 6.391227 AAGAACTGATTTAGGTGGTGTTTG 57.609 37.500 0.00 0.00 0.00 2.93
806 1049 6.183360 CCAAAGAACTGATTTAGGTGGTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
807 1050 5.301805 CCAAAGAACTGATTTAGGTGGTGTT 59.698 40.000 0.00 0.00 0.00 3.32
808 1051 4.827284 CCAAAGAACTGATTTAGGTGGTGT 59.173 41.667 0.00 0.00 0.00 4.16
809 1052 5.070001 TCCAAAGAACTGATTTAGGTGGTG 58.930 41.667 0.00 0.00 0.00 4.17
810 1053 5.163088 ACTCCAAAGAACTGATTTAGGTGGT 60.163 40.000 0.00 0.00 0.00 4.16
811 1054 5.316987 ACTCCAAAGAACTGATTTAGGTGG 58.683 41.667 0.00 0.00 0.00 4.61
812 1055 6.712547 AGAACTCCAAAGAACTGATTTAGGTG 59.287 38.462 0.00 0.00 0.00 4.00
813 1056 6.842676 AGAACTCCAAAGAACTGATTTAGGT 58.157 36.000 0.00 0.00 0.00 3.08
814 1057 6.936900 TGAGAACTCCAAAGAACTGATTTAGG 59.063 38.462 0.00 0.00 0.00 2.69
815 1058 7.095017 GGTGAGAACTCCAAAGAACTGATTTAG 60.095 40.741 0.00 0.00 0.00 1.85
816 1059 6.710744 GGTGAGAACTCCAAAGAACTGATTTA 59.289 38.462 0.00 0.00 0.00 1.40
817 1060 5.532779 GGTGAGAACTCCAAAGAACTGATTT 59.467 40.000 0.00 0.00 0.00 2.17
818 1061 5.066593 GGTGAGAACTCCAAAGAACTGATT 58.933 41.667 0.00 0.00 0.00 2.57
828 1071 0.313043 GTCGACGGTGAGAACTCCAA 59.687 55.000 0.00 0.00 0.00 3.53
932 1267 3.896888 GAGATGATGGTGGATGAGAGAGT 59.103 47.826 0.00 0.00 0.00 3.24
1054 1475 1.909302 GGAGAACATGTCCTCCTCCAA 59.091 52.381 23.01 0.00 44.23 3.53
1191 1663 0.179240 CGTTGTGACTCATCTTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
1361 1884 7.013083 AGCAAAAGATAAATCGATCAGATGCTT 59.987 33.333 0.00 0.00 40.02 3.91
1391 1927 2.975732 TGCTCATCTTCTTCTGCGAT 57.024 45.000 0.00 0.00 0.00 4.58
1424 1960 0.172578 TGTACTTGATCACCCGCGAG 59.827 55.000 8.23 0.00 0.00 5.03
1601 2143 3.064324 GCTCCGGCCATTGTGCTT 61.064 61.111 2.24 0.00 0.00 3.91
1654 2196 0.178068 TATGAGGCGAAGACCTTGGC 59.822 55.000 8.02 8.02 41.32 4.52
1800 2586 5.179555 AGTTTTAGGCTTTTAGCTCGTCAAG 59.820 40.000 0.00 0.00 41.99 3.02
1801 2587 5.061179 AGTTTTAGGCTTTTAGCTCGTCAA 58.939 37.500 0.00 0.00 41.99 3.18
1933 2721 0.534412 CAGGGCTCGACAAGATCAGT 59.466 55.000 0.00 0.00 0.00 3.41
2298 3305 3.678072 ACAATTCACGGTTCGTCATACTG 59.322 43.478 0.00 0.00 38.32 2.74
2318 3326 7.239166 TCGGTTAATGTAAACAAAACGTACA 57.761 32.000 5.24 0.00 32.58 2.90
2323 3331 7.790216 GCATGTTTCGGTTAATGTAAACAAAAC 59.210 33.333 12.98 0.00 42.98 2.43
2383 3392 1.207089 CGGGAGCTATCACACCTTTCA 59.793 52.381 0.00 0.00 0.00 2.69
2433 3473 8.242739 TCATATTTGATGTCGCAATTTTTCAGA 58.757 29.630 0.00 0.00 0.00 3.27
2440 3480 7.650504 CCTTTGATCATATTTGATGTCGCAATT 59.349 33.333 3.15 0.00 42.73 2.32
2441 3481 7.143340 CCTTTGATCATATTTGATGTCGCAAT 58.857 34.615 3.15 0.00 42.73 3.56
2465 3505 6.994992 TGAAAATTTGCAAGAACGTAAAACC 58.005 32.000 0.00 0.00 0.00 3.27
2472 3512 9.649024 ATTTTGTTATGAAAATTTGCAAGAACG 57.351 25.926 16.71 0.00 32.70 3.95
2511 3551 3.050619 CAGAAACTCACGTGTACACCTC 58.949 50.000 20.11 6.27 0.00 3.85
2517 3557 5.462068 CACTGAAATCAGAAACTCACGTGTA 59.538 40.000 16.51 1.31 46.59 2.90
2520 3560 3.248602 GCACTGAAATCAGAAACTCACGT 59.751 43.478 16.93 0.00 46.59 4.49
2522 3562 6.545504 TTAGCACTGAAATCAGAAACTCAC 57.454 37.500 16.93 0.00 46.59 3.51
2557 3598 2.191128 AGGATTTCAGCGCTCAAAGT 57.809 45.000 13.11 4.70 0.00 2.66
2558 3599 3.565905 AAAGGATTTCAGCGCTCAAAG 57.434 42.857 13.11 0.00 27.08 2.77
2562 3603 3.057946 ACAAGAAAAGGATTTCAGCGCTC 60.058 43.478 7.13 0.00 46.03 5.03
2563 3604 2.887152 ACAAGAAAAGGATTTCAGCGCT 59.113 40.909 2.64 2.64 46.03 5.92
2566 3607 5.600696 TCCAAACAAGAAAAGGATTTCAGC 58.399 37.500 4.34 0.00 46.03 4.26
2574 3615 3.225940 AGGAGCTCCAAACAAGAAAAGG 58.774 45.455 33.90 0.00 38.89 3.11
2575 3616 3.058639 CGAGGAGCTCCAAACAAGAAAAG 60.059 47.826 33.90 7.30 38.89 2.27
2610 3651 2.694628 AGGTGCTTGCAAGTTTTCATGA 59.305 40.909 26.55 0.00 0.00 3.07
2613 3654 3.020274 TGTAGGTGCTTGCAAGTTTTCA 58.980 40.909 26.55 13.72 0.00 2.69
2614 3655 3.708563 TGTAGGTGCTTGCAAGTTTTC 57.291 42.857 26.55 11.22 0.00 2.29
2619 3660 3.715628 AACTTTGTAGGTGCTTGCAAG 57.284 42.857 22.44 22.44 0.00 4.01
2642 3683 8.039603 TGAAACTTTGCGACATCAAATATAGT 57.960 30.769 0.00 0.00 35.64 2.12
2696 3744 6.606395 GGACTCCCTCTATGAACAGTAAGTTA 59.394 42.308 0.00 0.00 41.51 2.24
2699 3747 4.342665 GGGACTCCCTCTATGAACAGTAAG 59.657 50.000 6.90 0.00 41.34 2.34
2717 3765 2.608988 CTCCTGGGTGCAGGGACT 60.609 66.667 0.00 0.00 42.50 3.85
2724 3772 2.031870 AGTTTTTCAACTCCTGGGTGC 58.968 47.619 0.00 0.00 39.15 5.01
2730 3778 4.503714 TGAGACCAGTTTTTCAACTCCT 57.496 40.909 0.00 0.00 41.69 3.69
2732 3780 6.564328 ACAAATGAGACCAGTTTTTCAACTC 58.436 36.000 0.00 0.00 41.69 3.01
2742 3790 7.857456 TGGTGTATTATACAAATGAGACCAGT 58.143 34.615 6.64 0.00 40.93 4.00
2745 3793 8.677148 ACATGGTGTATTATACAAATGAGACC 57.323 34.615 24.15 14.00 40.93 3.85
2753 3801 5.818336 CCGGTTGACATGGTGTATTATACAA 59.182 40.000 6.64 0.00 40.93 2.41
2755 3803 5.603596 TCCGGTTGACATGGTGTATTATAC 58.396 41.667 0.00 0.00 0.00 1.47
2756 3804 5.873146 TCCGGTTGACATGGTGTATTATA 57.127 39.130 0.00 0.00 0.00 0.98
2758 3806 4.162509 TGATCCGGTTGACATGGTGTATTA 59.837 41.667 0.00 0.00 0.00 0.98
2760 3808 2.503765 TGATCCGGTTGACATGGTGTAT 59.496 45.455 0.00 0.00 0.00 2.29
2761 3809 1.903183 TGATCCGGTTGACATGGTGTA 59.097 47.619 0.00 0.00 0.00 2.90
2774 3843 2.565841 GAGAGACCCATTTTGATCCGG 58.434 52.381 0.00 0.00 0.00 5.14
2846 3948 2.487775 TGGGTAGAGGGCACATGTAAT 58.512 47.619 0.00 0.00 0.00 1.89
2893 3995 5.698545 GCCTATAAGATGTAAGCCTGAACAG 59.301 44.000 0.00 0.00 0.00 3.16
2894 3996 5.366768 AGCCTATAAGATGTAAGCCTGAACA 59.633 40.000 0.00 0.00 0.00 3.18
2899 4001 3.511934 CGGAGCCTATAAGATGTAAGCCT 59.488 47.826 0.00 0.00 0.00 4.58
2902 4016 5.944599 TCCTACGGAGCCTATAAGATGTAAG 59.055 44.000 0.00 0.00 0.00 2.34
2942 5484 4.397730 TGATTTACCACCATGGAATGTTCG 59.602 41.667 21.47 0.00 44.81 3.95
2952 5494 2.297701 GGTGCGATGATTTACCACCAT 58.702 47.619 3.43 0.00 44.07 3.55
2990 5532 5.673514 ACAAAGGATCAAAACACAGCAAAT 58.326 33.333 0.00 0.00 0.00 2.32
2993 5535 4.734398 AACAAAGGATCAAAACACAGCA 57.266 36.364 0.00 0.00 0.00 4.41
2995 5537 5.339990 ACGAAACAAAGGATCAAAACACAG 58.660 37.500 0.00 0.00 0.00 3.66
3012 5554 4.394920 TCTCATATGCCCAAAAGACGAAAC 59.605 41.667 0.00 0.00 0.00 2.78
3016 5558 5.056480 TGTATCTCATATGCCCAAAAGACG 58.944 41.667 0.00 0.00 0.00 4.18
3030 5953 3.118482 CCACCTGAGTGCTTGTATCTCAT 60.118 47.826 0.00 0.00 43.09 2.90
3031 5954 2.234661 CCACCTGAGTGCTTGTATCTCA 59.765 50.000 0.00 0.00 43.09 3.27
3103 6027 0.464373 TAGCCTAAGCAGCCATGTGC 60.464 55.000 0.10 0.10 43.56 4.57
3105 6029 0.471617 CCTAGCCTAAGCAGCCATGT 59.528 55.000 0.00 0.00 43.56 3.21
3109 6033 1.338136 TGACCCTAGCCTAAGCAGCC 61.338 60.000 0.00 0.00 43.56 4.85
3146 6070 2.325082 GCACCCTAGCACACCAACG 61.325 63.158 0.00 0.00 0.00 4.10
3174 6098 3.906846 GAGGTCAATGAGGGTCTATCCAT 59.093 47.826 0.00 0.00 38.11 3.41
3186 6110 5.579047 ACCAATACCAATTGAGGTCAATGA 58.421 37.500 7.12 0.00 45.06 2.57
3222 6147 0.468400 TTCCGTTGGGGTTGAAAGGG 60.468 55.000 0.00 0.00 37.00 3.95
3239 6164 3.456277 ACAAGTATGATGACTCCCCCTTC 59.544 47.826 0.00 0.00 0.00 3.46
3259 6190 4.787135 TCCCATCAGTTATATTGGCACA 57.213 40.909 0.00 0.00 0.00 4.57
3269 6200 7.013220 ACAAGCTAGATCTATCCCATCAGTTA 58.987 38.462 2.11 0.00 0.00 2.24
3342 6273 6.448053 TTTCGAGAGTCTTCGTGTTTTATG 57.552 37.500 0.00 0.00 41.22 1.90
3345 6276 5.047847 TCATTTCGAGAGTCTTCGTGTTTT 58.952 37.500 0.00 0.00 41.22 2.43
3352 6283 5.635280 TCACAATGTCATTTCGAGAGTCTTC 59.365 40.000 0.00 0.00 0.00 2.87
3355 6286 6.246449 CAATCACAATGTCATTTCGAGAGTC 58.754 40.000 0.00 0.00 0.00 3.36
3390 6321 4.440103 CACTTCCCGTAGTTAATCGATTCG 59.560 45.833 15.25 11.35 0.00 3.34
3475 6418 1.218450 GCCTAGAGGGTAGGAGAAGGT 59.782 57.143 2.09 0.00 36.85 3.50
3499 6442 0.114954 TAGTCACGGGTGGTAGGGTT 59.885 55.000 0.00 0.00 0.00 4.11
3520 6463 2.159382 CATTTTCCACCGGTGCTACTT 58.841 47.619 29.75 10.30 0.00 2.24
3534 6477 8.441312 AAAAATGCATCCACATATCCATTTTC 57.559 30.769 0.00 0.00 40.14 2.29
3639 6588 7.812191 TGCTTGCAGTTAGTAATTTGGTATTTG 59.188 33.333 0.00 0.00 0.00 2.32
3645 6594 5.574055 CACATGCTTGCAGTTAGTAATTTGG 59.426 40.000 0.87 0.00 0.00 3.28
3647 6596 6.331369 ACACATGCTTGCAGTTAGTAATTT 57.669 33.333 0.87 0.00 0.00 1.82
3759 8355 4.139859 TGTTCGTTGGGTTCTCTGTTTA 57.860 40.909 0.00 0.00 0.00 2.01
3804 8569 1.381429 GCGTTCTCGAGTTCGTTACAC 59.619 52.381 23.63 10.35 40.80 2.90
3816 8581 1.827315 TTTGCTTCACGGCGTTCTCG 61.827 55.000 11.19 0.00 40.37 4.04
3868 8633 8.785946 TGATGACATGCACCATTATTATGTTAG 58.214 33.333 0.00 0.00 32.58 2.34
3902 8667 5.690409 GCATGCATTTTGATTCATGGTAGAG 59.310 40.000 14.21 0.00 37.40 2.43
3954 8720 6.140786 GTCATGCATGCATCAGTACTATTTG 58.859 40.000 30.07 15.85 33.90 2.32
4038 8804 4.502259 GCCAGGGTACATGATGAAGAGTAG 60.502 50.000 0.00 0.00 0.00 2.57
4040 8806 2.171448 GCCAGGGTACATGATGAAGAGT 59.829 50.000 0.00 0.00 0.00 3.24
4246 9013 1.533711 GGCCATGCCCAGATACACT 59.466 57.895 0.00 0.00 44.06 3.55
4257 9024 0.393537 AGAAGCACTACAGGCCATGC 60.394 55.000 5.01 6.68 38.39 4.06
4258 9025 1.741706 CAAGAAGCACTACAGGCCATG 59.258 52.381 5.01 2.64 0.00 3.66
4259 9026 1.952367 GCAAGAAGCACTACAGGCCAT 60.952 52.381 5.01 0.00 44.79 4.40
4260 9027 0.606401 GCAAGAAGCACTACAGGCCA 60.606 55.000 5.01 0.00 44.79 5.36
4300 9067 6.276091 GGCAACTGTTTCTCTCTGAAAATTT 58.724 36.000 0.00 0.00 45.10 1.82
4302 9069 4.023707 CGGCAACTGTTTCTCTCTGAAAAT 60.024 41.667 0.00 0.00 45.10 1.82
4308 9075 2.614057 CAAACGGCAACTGTTTCTCTCT 59.386 45.455 1.60 0.00 39.88 3.10
4383 9177 3.288308 CTCCAACGAGCTCGGCTGT 62.288 63.158 36.93 16.06 44.95 4.40
4450 9244 4.231753 CACATTGCGTGCCTTGTG 57.768 55.556 9.05 9.05 39.19 3.33
4470 9264 3.620488 GGTTCAGTTCATTGATAGGCCA 58.380 45.455 5.01 0.00 0.00 5.36
4486 9280 5.446143 AATGCAATTACAAACTCGGTTCA 57.554 34.783 0.00 0.00 32.46 3.18
4504 9298 8.078596 AGAAATAACAAACTCTGTCAGAAATGC 58.921 33.333 3.67 0.00 37.23 3.56
4510 9304 7.678947 ATCCAGAAATAACAAACTCTGTCAG 57.321 36.000 0.00 0.00 37.23 3.51
4558 9352 8.414003 GGAACCTCTGAACTTATGTTTTCTTTT 58.586 33.333 0.00 0.00 36.39 2.27
4559 9353 7.780271 AGGAACCTCTGAACTTATGTTTTCTTT 59.220 33.333 0.00 0.00 36.39 2.52
4562 9356 7.511959 AAGGAACCTCTGAACTTATGTTTTC 57.488 36.000 0.00 0.00 36.39 2.29
4786 9583 7.338710 CCCTCAAAGAAAAGTGTCATATAGGA 58.661 38.462 0.00 0.00 0.00 2.94
4787 9584 6.038714 GCCCTCAAAGAAAAGTGTCATATAGG 59.961 42.308 0.00 0.00 0.00 2.57
4788 9585 6.825721 AGCCCTCAAAGAAAAGTGTCATATAG 59.174 38.462 0.00 0.00 0.00 1.31
4789 9586 6.721318 AGCCCTCAAAGAAAAGTGTCATATA 58.279 36.000 0.00 0.00 0.00 0.86
4790 9587 5.574188 AGCCCTCAAAGAAAAGTGTCATAT 58.426 37.500 0.00 0.00 0.00 1.78
4791 9588 4.985538 AGCCCTCAAAGAAAAGTGTCATA 58.014 39.130 0.00 0.00 0.00 2.15
4792 9589 3.837355 AGCCCTCAAAGAAAAGTGTCAT 58.163 40.909 0.00 0.00 0.00 3.06
4793 9590 3.297134 AGCCCTCAAAGAAAAGTGTCA 57.703 42.857 0.00 0.00 0.00 3.58
4794 9591 3.004839 GGAAGCCCTCAAAGAAAAGTGTC 59.995 47.826 0.00 0.00 0.00 3.67
4795 9592 2.959030 GGAAGCCCTCAAAGAAAAGTGT 59.041 45.455 0.00 0.00 0.00 3.55
4796 9593 3.225940 AGGAAGCCCTCAAAGAAAAGTG 58.774 45.455 0.00 0.00 38.86 3.16
4800 9597 6.357367 GTCATATAGGAAGCCCTCAAAGAAA 58.643 40.000 0.00 0.00 43.14 2.52
4804 9601 3.494398 GCGTCATATAGGAAGCCCTCAAA 60.494 47.826 13.35 0.00 43.14 2.69
4806 9603 1.618837 GCGTCATATAGGAAGCCCTCA 59.381 52.381 13.35 0.00 43.14 3.86
4812 9609 8.988064 ACACATAATAAGCGTCATATAGGAAG 57.012 34.615 0.00 0.00 0.00 3.46
4818 9615 9.542462 AACAGTTACACATAATAAGCGTCATAT 57.458 29.630 0.00 0.00 0.00 1.78
4819 9616 8.813282 CAACAGTTACACATAATAAGCGTCATA 58.187 33.333 0.00 0.00 0.00 2.15
4820 9617 7.676338 GCAACAGTTACACATAATAAGCGTCAT 60.676 37.037 0.00 0.00 0.00 3.06
4821 9618 6.401688 GCAACAGTTACACATAATAAGCGTCA 60.402 38.462 0.00 0.00 0.00 4.35
4822 9619 5.957796 GCAACAGTTACACATAATAAGCGTC 59.042 40.000 0.00 0.00 0.00 5.19
4823 9620 5.642063 AGCAACAGTTACACATAATAAGCGT 59.358 36.000 0.00 0.00 0.00 5.07
4825 9622 6.093495 TCCAGCAACAGTTACACATAATAAGC 59.907 38.462 0.00 0.00 0.00 3.09
4826 9623 7.609760 TCCAGCAACAGTTACACATAATAAG 57.390 36.000 0.00 0.00 0.00 1.73
4827 9624 8.458052 CAATCCAGCAACAGTTACACATAATAA 58.542 33.333 0.00 0.00 0.00 1.40
4828 9625 7.415095 GCAATCCAGCAACAGTTACACATAATA 60.415 37.037 0.00 0.00 0.00 0.98
4829 9626 6.625740 GCAATCCAGCAACAGTTACACATAAT 60.626 38.462 0.00 0.00 0.00 1.28
4832 9629 3.057315 GCAATCCAGCAACAGTTACACAT 60.057 43.478 0.00 0.00 0.00 3.21
4833 9630 2.293122 GCAATCCAGCAACAGTTACACA 59.707 45.455 0.00 0.00 0.00 3.72
4834 9631 2.293122 TGCAATCCAGCAACAGTTACAC 59.707 45.455 0.00 0.00 42.46 2.90
4835 9632 2.580962 TGCAATCCAGCAACAGTTACA 58.419 42.857 0.00 0.00 42.46 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.