Multiple sequence alignment - TraesCS3A01G488800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G488800 chr3A 100.000 6333 0 0 1 6333 716557701 716564033 0.000000e+00 11695.0
1 TraesCS3A01G488800 chr3D 93.274 5352 219 57 1 5303 581529193 581523934 0.000000e+00 7758.0
2 TraesCS3A01G488800 chr3D 93.350 782 42 6 3303 4080 581456081 581455306 0.000000e+00 1147.0
3 TraesCS3A01G488800 chr3D 86.922 887 76 21 4196 5048 581448109 581447229 0.000000e+00 959.0
4 TraesCS3A01G488800 chr3D 86.275 459 53 5 5884 6333 581518646 581518189 2.050000e-134 490.0
5 TraesCS3A01G488800 chr3D 87.591 411 43 4 5930 6333 581507696 581507287 2.670000e-128 470.0
6 TraesCS3A01G488800 chr3D 91.925 161 9 3 5041 5201 581431586 581431430 8.260000e-54 222.0
7 TraesCS3A01G488800 chr3D 94.737 133 6 1 5871 6002 581523477 581523345 8.320000e-49 206.0
8 TraesCS3A01G488800 chr3D 92.000 100 8 0 4096 4195 581454067 581453968 2.380000e-29 141.0
9 TraesCS3A01G488800 chr3D 78.365 208 36 6 5262 5468 581422175 581421976 6.670000e-25 126.0
10 TraesCS3A01G488800 chr3D 89.130 92 6 2 5175 5264 581520748 581520659 1.870000e-20 111.0
11 TraesCS3A01G488800 chr3D 90.323 62 5 1 5263 5324 581480294 581480234 5.260000e-11 80.5
12 TraesCS3A01G488800 chr3D 82.716 81 6 6 5191 5264 581480388 581480309 1.470000e-06 65.8
13 TraesCS3A01G488800 chr3B 91.809 4676 225 59 860 5452 776552807 776557407 0.000000e+00 6368.0
14 TraesCS3A01G488800 chr3B 93.607 610 33 6 3303 3908 776866155 776866762 0.000000e+00 905.0
15 TraesCS3A01G488800 chr3B 85.566 866 100 20 4196 5048 776946894 776947747 0.000000e+00 883.0
16 TraesCS3A01G488800 chr3B 94.723 379 15 4 3430 3805 776584735 776585111 9.150000e-163 584.0
17 TraesCS3A01G488800 chr3B 86.408 412 29 10 5850 6257 776557858 776558246 5.870000e-115 425.0
18 TraesCS3A01G488800 chr3B 83.893 447 58 6 5884 6325 777001060 777001497 1.270000e-111 414.0
19 TraesCS3A01G488800 chr3B 76.512 430 75 16 5896 6306 776863276 776863698 1.790000e-50 211.0
20 TraesCS3A01G488800 chr3B 92.000 100 8 0 4096 4195 776868080 776868179 2.380000e-29 141.0
21 TraesCS3A01G488800 chr3B 98.182 55 1 0 6250 6304 776558816 776558870 5.230000e-16 97.1
22 TraesCS3A01G488800 chr3B 86.420 81 4 6 5190 5264 776788297 776788376 1.460000e-11 82.4
23 TraesCS3A01G488800 chr3B 86.420 81 4 6 5190 5264 776825633 776825712 1.460000e-11 82.4
24 TraesCS3A01G488800 chr3B 97.561 41 1 0 5263 5303 776788391 776788431 3.170000e-08 71.3
25 TraesCS3A01G488800 chr3B 95.349 43 2 0 3 45 776550857 776550899 1.140000e-07 69.4
26 TraesCS3A01G488800 chr3B 97.436 39 1 0 5263 5301 776825727 776825765 4.100000e-07 67.6
27 TraesCS3A01G488800 chr3B 94.737 38 2 0 5326 5363 776557212 776557249 6.860000e-05 60.2
28 TraesCS3A01G488800 chr4B 91.724 145 12 0 5702 5846 391552173 391552029 1.080000e-47 202.0
29 TraesCS3A01G488800 chr7D 90.647 139 11 2 5703 5840 388959642 388959779 3.900000e-42 183.0
30 TraesCS3A01G488800 chr6B 88.112 143 17 0 5704 5846 181707857 181707715 3.040000e-38 171.0
31 TraesCS3A01G488800 chr1A 88.971 136 15 0 5711 5846 241734911 241734776 1.090000e-37 169.0
32 TraesCS3A01G488800 chr7B 90.816 98 9 0 5749 5846 465588174 465588077 1.430000e-26 132.0
33 TraesCS3A01G488800 chr2A 86.667 105 13 1 5707 5811 686220349 686220246 1.440000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G488800 chr3A 716557701 716564033 6332 False 11695.00 11695 100.000 1 6333 1 chr3A.!!$F1 6332
1 TraesCS3A01G488800 chr3D 581518189 581529193 11004 True 2141.25 7758 90.854 1 6333 4 chr3D.!!$R7 6332
2 TraesCS3A01G488800 chr3D 581447229 581448109 880 True 959.00 959 86.922 4196 5048 1 chr3D.!!$R3 852
3 TraesCS3A01G488800 chr3D 581453968 581456081 2113 True 644.00 1147 92.675 3303 4195 2 chr3D.!!$R5 892
4 TraesCS3A01G488800 chr3B 776550857 776558870 8013 False 1403.94 6368 93.297 3 6304 5 chr3B.!!$F4 6301
5 TraesCS3A01G488800 chr3B 776946894 776947747 853 False 883.00 883 85.566 4196 5048 1 chr3B.!!$F2 852
6 TraesCS3A01G488800 chr3B 776863276 776868179 4903 False 419.00 905 87.373 3303 6306 3 chr3B.!!$F7 3003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 1552 0.249120 TCCTTCGCACCACATGTAGG 59.751 55.000 0.00 5.37 0.00 3.18 F
828 1813 0.399075 TCCGGTTGAGTTTCCTTCCC 59.601 55.000 0.00 0.00 0.00 3.97 F
1574 2753 0.109781 CTGCCACGTTTAATTGCGCT 60.110 50.000 9.73 0.00 0.00 5.92 F
1576 2755 0.109964 GCCACGTTTAATTGCGCTGA 60.110 50.000 9.73 0.00 0.00 4.26 F
2213 3394 1.271379 GCTGTGTTCTGCTTTCCCCTA 60.271 52.381 0.00 0.00 35.98 3.53 F
3419 4611 0.250727 CAATGGACAACACGGGAGGT 60.251 55.000 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 2657 0.249238 CAGAGGAGGAGCGGAAATCG 60.249 60.000 0.00 0.0 42.76 3.34 R
2554 3742 1.396301 GTACAGCAGAATGAGCAGCAC 59.604 52.381 0.00 0.0 39.69 4.40 R
2634 3822 3.004002 TGTGATGCAAGAGAAACAAGCAG 59.996 43.478 0.00 0.0 38.75 4.24 R
3093 4284 6.269077 TGTCAGAAAGGTGTCCTTGTTAGATA 59.731 38.462 1.62 0.0 43.92 1.98 R
3611 4807 0.835941 ATCCATTCGCCTTCTCAGCT 59.164 50.000 0.00 0.0 0.00 4.24 R
5341 7899 0.178975 CACTACAAAGGCCCAACCCA 60.179 55.000 0.00 0.0 40.58 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 1213 2.039298 TCCCTTGTGGACACCCCA 60.039 61.111 0.00 0.00 44.25 4.96
263 1239 0.319383 CGCTCCATCCTTCTCATCCG 60.319 60.000 0.00 0.00 0.00 4.18
288 1264 1.134128 TCCAGCAGCAGAGACAACAAA 60.134 47.619 0.00 0.00 0.00 2.83
375 1352 0.881159 AATTCGTGGCGTCGTTTCCA 60.881 50.000 0.00 0.00 0.00 3.53
381 1358 0.390124 TGGCGTCGTTTCCAGTTACT 59.610 50.000 0.00 0.00 0.00 2.24
385 1362 1.271656 CGTCGTTTCCAGTTACTCCCT 59.728 52.381 0.00 0.00 0.00 4.20
386 1363 2.489329 CGTCGTTTCCAGTTACTCCCTA 59.511 50.000 0.00 0.00 0.00 3.53
387 1364 3.671702 CGTCGTTTCCAGTTACTCCCTAC 60.672 52.174 0.00 0.00 0.00 3.18
388 1365 2.827921 TCGTTTCCAGTTACTCCCTACC 59.172 50.000 0.00 0.00 0.00 3.18
390 1367 3.119209 CGTTTCCAGTTACTCCCTACCTC 60.119 52.174 0.00 0.00 0.00 3.85
391 1368 2.842645 TCCAGTTACTCCCTACCTCC 57.157 55.000 0.00 0.00 0.00 4.30
392 1369 2.295143 TCCAGTTACTCCCTACCTCCT 58.705 52.381 0.00 0.00 0.00 3.69
393 1370 2.024273 TCCAGTTACTCCCTACCTCCTG 60.024 54.545 0.00 0.00 0.00 3.86
394 1371 1.757699 CAGTTACTCCCTACCTCCTGC 59.242 57.143 0.00 0.00 0.00 4.85
413 1390 1.279271 GCCCCTTCTCTTCTAGCACAA 59.721 52.381 0.00 0.00 0.00 3.33
453 1430 1.078709 CAGTGATGCGACCGAAACAT 58.921 50.000 0.00 0.00 0.00 2.71
545 1524 0.545309 TCAACCTCCTGCAGCTACCT 60.545 55.000 8.66 0.00 0.00 3.08
567 1546 1.296392 CCATCTCCTTCGCACCACA 59.704 57.895 0.00 0.00 0.00 4.17
570 1549 0.615331 ATCTCCTTCGCACCACATGT 59.385 50.000 0.00 0.00 0.00 3.21
572 1551 1.204704 TCTCCTTCGCACCACATGTAG 59.795 52.381 0.00 0.00 0.00 2.74
573 1552 0.249120 TCCTTCGCACCACATGTAGG 59.751 55.000 0.00 5.37 0.00 3.18
630 1609 1.868109 GCCTCCGTTGCAAAAGTTTCC 60.868 52.381 0.00 0.00 0.00 3.13
635 1614 1.255084 CGTTGCAAAAGTTTCCGCAAG 59.745 47.619 19.99 12.96 44.41 4.01
667 1646 3.518634 TTCAAAAGGGTTCTGCAACAC 57.481 42.857 0.00 0.00 35.97 3.32
701 1682 5.064071 TGGAAAAGAAAACGGTTTGAATTGC 59.936 36.000 1.45 0.90 0.00 3.56
799 1784 3.885724 TGCAAGATCTGACGGTTATCA 57.114 42.857 0.00 0.00 0.00 2.15
806 1791 4.822896 AGATCTGACGGTTATCACTACCTC 59.177 45.833 0.00 0.00 33.35 3.85
810 1795 3.635373 TGACGGTTATCACTACCTCCATC 59.365 47.826 0.00 0.00 33.35 3.51
817 1802 1.191535 CACTACCTCCATCCGGTTGA 58.808 55.000 14.27 2.25 35.98 3.18
820 1805 1.831736 CTACCTCCATCCGGTTGAGTT 59.168 52.381 14.27 3.78 35.98 3.01
821 1806 1.064825 ACCTCCATCCGGTTGAGTTT 58.935 50.000 14.27 0.00 0.00 2.66
822 1807 1.003233 ACCTCCATCCGGTTGAGTTTC 59.997 52.381 14.27 0.00 0.00 2.78
823 1808 1.679032 CCTCCATCCGGTTGAGTTTCC 60.679 57.143 14.27 0.00 0.00 3.13
824 1809 1.279271 CTCCATCCGGTTGAGTTTCCT 59.721 52.381 14.27 0.00 0.00 3.36
828 1813 0.399075 TCCGGTTGAGTTTCCTTCCC 59.601 55.000 0.00 0.00 0.00 3.97
829 1814 0.608308 CCGGTTGAGTTTCCTTCCCC 60.608 60.000 0.00 0.00 0.00 4.81
902 2056 3.308705 GACGGGTCCGGTCCACTT 61.309 66.667 19.75 2.35 44.69 3.16
936 2090 1.352156 GCCCACTTCTACAAGCGACG 61.352 60.000 0.00 0.00 32.09 5.12
942 2096 3.771160 CTACAAGCGACGCCCCCT 61.771 66.667 17.79 0.00 0.00 4.79
1471 2648 1.990160 TTCCCCAAGTTCTGGTGCGT 61.990 55.000 0.00 0.00 44.76 5.24
1472 2649 2.260869 CCCCAAGTTCTGGTGCGTG 61.261 63.158 0.00 0.00 44.76 5.34
1474 2651 2.249309 CAAGTTCTGGTGCGTGCG 59.751 61.111 0.00 0.00 0.00 5.34
1475 2652 2.108157 AAGTTCTGGTGCGTGCGA 59.892 55.556 0.00 0.00 0.00 5.10
1477 2654 1.291877 AAGTTCTGGTGCGTGCGATC 61.292 55.000 0.00 0.00 0.00 3.69
1478 2655 2.027073 GTTCTGGTGCGTGCGATCA 61.027 57.895 0.00 0.00 0.00 2.92
1479 2656 2.027073 TTCTGGTGCGTGCGATCAC 61.027 57.895 0.00 0.00 39.78 3.06
1486 2663 1.012234 GCGTGCGATCACCGATTTC 60.012 57.895 0.00 0.00 40.04 2.17
1495 2672 1.521681 CACCGATTTCCGCTCCTCC 60.522 63.158 0.00 0.00 36.84 4.30
1504 2681 0.394488 TCCGCTCCTCCTCTGTACTG 60.394 60.000 0.00 0.00 0.00 2.74
1510 2687 3.199677 CTCCTCCTCTGTACTGTACTCG 58.800 54.545 17.98 9.79 0.00 4.18
1511 2688 1.671845 CCTCCTCTGTACTGTACTCGC 59.328 57.143 17.98 0.00 0.00 5.03
1512 2689 2.634600 CTCCTCTGTACTGTACTCGCT 58.365 52.381 17.98 0.00 0.00 4.93
1516 2693 3.002862 CCTCTGTACTGTACTCGCTGATC 59.997 52.174 17.98 0.00 0.00 2.92
1559 2738 0.464554 GAGGGTGGATTAGCACTGCC 60.465 60.000 0.00 0.00 0.00 4.85
1565 2744 1.165270 GGATTAGCACTGCCACGTTT 58.835 50.000 0.00 0.00 0.00 3.60
1574 2753 0.109781 CTGCCACGTTTAATTGCGCT 60.110 50.000 9.73 0.00 0.00 5.92
1575 2754 0.386605 TGCCACGTTTAATTGCGCTG 60.387 50.000 9.73 0.00 0.00 5.18
1576 2755 0.109964 GCCACGTTTAATTGCGCTGA 60.110 50.000 9.73 0.00 0.00 4.26
1577 2756 1.664588 GCCACGTTTAATTGCGCTGAA 60.665 47.619 9.73 0.00 0.00 3.02
1736 2915 4.143986 AGTTGAAGTTAGCCCTGCTATC 57.856 45.455 0.00 0.00 41.01 2.08
1774 2953 6.431234 GTGTCTAGTGGAAGGATTTGTGATTT 59.569 38.462 0.00 0.00 0.00 2.17
1839 3018 5.255397 AGGGATCACTACATGTTCCAAAA 57.745 39.130 14.06 0.00 45.72 2.44
1840 3019 5.831103 AGGGATCACTACATGTTCCAAAAT 58.169 37.500 14.06 0.00 45.72 1.82
1843 3022 5.807011 GGATCACTACATGTTCCAAAATTGC 59.193 40.000 2.30 0.00 44.02 3.56
1844 3023 6.350445 GGATCACTACATGTTCCAAAATTGCT 60.350 38.462 2.30 0.00 44.02 3.91
1845 3024 7.148086 GGATCACTACATGTTCCAAAATTGCTA 60.148 37.037 2.30 0.00 44.02 3.49
1847 3026 6.150976 TCACTACATGTTCCAAAATTGCTAGG 59.849 38.462 2.30 0.00 0.00 3.02
1850 3029 5.025453 ACATGTTCCAAAATTGCTAGGGAT 58.975 37.500 0.00 0.00 0.00 3.85
1851 3030 5.127682 ACATGTTCCAAAATTGCTAGGGATC 59.872 40.000 0.00 0.00 0.00 3.36
1853 3032 4.462483 TGTTCCAAAATTGCTAGGGATCAC 59.538 41.667 0.00 0.00 0.00 3.06
1854 3033 4.591321 TCCAAAATTGCTAGGGATCACT 57.409 40.909 1.44 1.44 0.00 3.41
1855 3034 5.708736 TCCAAAATTGCTAGGGATCACTA 57.291 39.130 4.24 4.24 0.00 2.74
1952 3133 4.106197 CGTGTCCTAGAGAACTTATGTGC 58.894 47.826 0.00 0.00 0.00 4.57
1974 3155 4.486090 CCTGAGTATCCATCCGTATTTCG 58.514 47.826 0.00 0.00 39.52 3.46
2159 3340 3.368248 ACATACTGATGGCCAAGCAAAT 58.632 40.909 10.96 5.16 37.39 2.32
2213 3394 1.271379 GCTGTGTTCTGCTTTCCCCTA 60.271 52.381 0.00 0.00 35.98 3.53
2265 3446 6.763715 AGGGTAATCTTATTATCCTGCACA 57.236 37.500 10.09 0.00 34.36 4.57
2301 3482 2.616458 CCAGCAGCCCCCTACCTTT 61.616 63.158 0.00 0.00 0.00 3.11
2399 3584 2.401583 TGATGCTATCAAACGCACCT 57.598 45.000 0.00 0.00 39.21 4.00
2441 3626 4.516698 AGCTATGTAAGATTCGGCATTTGG 59.483 41.667 0.00 0.00 0.00 3.28
2480 3665 7.364522 TGTTTACTTCATGACATGACTTAGC 57.635 36.000 17.77 7.65 39.39 3.09
2505 3690 5.826737 AGGCCTTTGTTGATCTGATATTCTG 59.173 40.000 0.00 0.00 0.00 3.02
2526 3714 5.354234 TCTGTTCCTTGTGACTTTTGAAGAC 59.646 40.000 0.00 0.00 0.00 3.01
2530 3718 4.881850 TCCTTGTGACTTTTGAAGACTTCC 59.118 41.667 12.66 0.00 0.00 3.46
2804 3994 3.549794 GTTTATGGAGATTGCTGAGGCT 58.450 45.455 0.00 0.00 39.59 4.58
2917 4107 2.565834 GCCCCAGTCTTATAGGCGATAA 59.434 50.000 0.11 0.11 33.18 1.75
3093 4284 4.744867 GCCTATCAGCAATGGACATACACT 60.745 45.833 0.00 0.00 0.00 3.55
3190 4382 6.775142 TGTTTTCCTGATGATGAAACCTTACA 59.225 34.615 0.00 0.00 30.64 2.41
3419 4611 0.250727 CAATGGACAACACGGGAGGT 60.251 55.000 0.00 0.00 0.00 3.85
3446 4638 9.696917 TTAGTGCTTACTTAACTACAGTAAACC 57.303 33.333 0.00 0.00 36.51 3.27
3486 4682 6.575244 AGTCCAATCCCAGTTATGTATGAA 57.425 37.500 0.00 0.00 0.00 2.57
3611 4807 5.188163 TCCACTTAATTGGACTGATAACCGA 59.812 40.000 10.35 0.00 41.00 4.69
3713 4909 1.207593 GCACTAACACTTGCAGCCG 59.792 57.895 0.00 0.00 38.68 5.52
3722 4918 3.638484 ACACTTGCAGCCGTTTTTATTC 58.362 40.909 0.00 0.00 0.00 1.75
3856 5052 5.505780 ACCTTTAATAGTGGCTACAATGCA 58.494 37.500 2.02 0.00 34.04 3.96
3941 5138 7.995463 TTCTCCCTTTTCGTGTTAATTTTTG 57.005 32.000 0.00 0.00 0.00 2.44
4145 6577 9.820229 CTTATCTCTACTCGTAATCTAAGCTTG 57.180 37.037 9.86 0.00 0.00 4.01
4226 6658 6.529220 ACATCCCATTATCTCTACTTGCTTC 58.471 40.000 0.00 0.00 0.00 3.86
4240 6673 9.107177 CTCTACTTGCTTCAATATCATCTTTGT 57.893 33.333 0.00 0.00 0.00 2.83
4271 6704 4.382362 CCTTCCTCTTTTTGCAATGGGATC 60.382 45.833 0.00 0.00 0.00 3.36
4356 6790 9.975218 ATCTTTAAGTTGTAAATACCCTCATGT 57.025 29.630 0.00 0.00 0.00 3.21
4497 6935 3.831333 TCCTTGGCATTTATTTGCACTGA 59.169 39.130 0.00 0.00 44.59 3.41
4627 7113 6.256053 ACACTCTAATCATGGGTTTTGGAAT 58.744 36.000 0.00 0.00 0.00 3.01
4691 7177 5.417266 TGTTTCTTGATGTGTCTTGGTCAAA 59.583 36.000 0.00 0.00 30.96 2.69
4720 7206 8.302515 TCTACCGAAACCTACATATTCTTCTT 57.697 34.615 0.00 0.00 0.00 2.52
4721 7207 8.755977 TCTACCGAAACCTACATATTCTTCTTT 58.244 33.333 0.00 0.00 0.00 2.52
4737 7224 4.885325 TCTTCTTTTCGGTAGTTTGGCTTT 59.115 37.500 0.00 0.00 0.00 3.51
4749 7236 2.279935 TTGGCTTTACAACCCGTGAT 57.720 45.000 0.00 0.00 0.00 3.06
4803 7292 0.674581 TCAGCGGAATTGTGGCAGAG 60.675 55.000 0.00 0.00 0.00 3.35
4852 7341 1.000506 GACAACCGAGCAGACAAGGTA 59.999 52.381 0.00 0.00 35.68 3.08
4861 7350 1.404315 GCAGACAAGGTAAGTCTCGGG 60.404 57.143 0.00 0.00 44.11 5.14
4892 7382 5.182001 CGTCATGATTTATCCATCTTTCCCC 59.818 44.000 0.00 0.00 0.00 4.81
4954 7448 0.914902 AGAGGTCACCTAAAGCCCCC 60.915 60.000 0.00 0.00 31.76 5.40
4965 7459 3.901797 AAGCCCCCGACTTCAAGCG 62.902 63.158 0.00 0.00 0.00 4.68
4993 7487 2.978824 GGCGAGGCTCTGTGGTTA 59.021 61.111 13.50 0.00 0.00 2.85
5054 7548 1.398692 GGTGAGAGGAGGTAGCAGAG 58.601 60.000 0.00 0.00 0.00 3.35
5055 7549 1.398692 GTGAGAGGAGGTAGCAGAGG 58.601 60.000 0.00 0.00 0.00 3.69
5056 7550 0.396417 TGAGAGGAGGTAGCAGAGGC 60.396 60.000 0.00 0.00 41.61 4.70
5188 7705 3.242969 CGGTCTGCTAACTTATGCGAGTA 60.243 47.826 0.00 0.00 0.00 2.59
5307 7852 8.034215 CAGGATGTAAATAGCATTTCCACAAAA 58.966 33.333 0.00 0.00 0.00 2.44
5309 7854 9.034544 GGATGTAAATAGCATTTCCACAAAATC 57.965 33.333 0.00 0.00 35.32 2.17
5324 7882 8.394971 TCCACAAAATCGATGATATTTATGCT 57.605 30.769 0.00 0.00 0.00 3.79
5327 7885 7.061441 CACAAAATCGATGATATTTATGCTGCC 59.939 37.037 0.00 0.00 0.00 4.85
5328 7886 6.822667 AAATCGATGATATTTATGCTGCCA 57.177 33.333 0.00 0.00 0.00 4.92
5329 7887 7.400599 AAATCGATGATATTTATGCTGCCAT 57.599 32.000 0.00 0.00 35.44 4.40
5330 7888 5.806366 TCGATGATATTTATGCTGCCATG 57.194 39.130 0.00 0.00 32.85 3.66
5332 7890 5.122711 TCGATGATATTTATGCTGCCATGTG 59.877 40.000 0.00 0.00 32.85 3.21
5333 7891 5.647589 GATGATATTTATGCTGCCATGTGG 58.352 41.667 0.00 0.00 38.53 4.17
5334 7892 3.827876 TGATATTTATGCTGCCATGTGGG 59.172 43.478 0.54 0.00 40.85 4.61
5336 7894 1.935799 TTTATGCTGCCATGTGGGTT 58.064 45.000 0.54 0.00 39.65 4.11
5337 7895 1.184431 TTATGCTGCCATGTGGGTTG 58.816 50.000 0.54 0.00 39.65 3.77
5338 7896 0.683828 TATGCTGCCATGTGGGTTGG 60.684 55.000 0.54 0.00 39.65 3.77
5339 7897 3.384532 GCTGCCATGTGGGTTGGG 61.385 66.667 0.54 0.00 39.65 4.12
5340 7898 2.118076 CTGCCATGTGGGTTGGGT 59.882 61.111 0.54 0.00 39.65 4.51
5341 7899 1.533753 CTGCCATGTGGGTTGGGTT 60.534 57.895 0.54 0.00 39.65 4.11
5342 7900 1.818959 CTGCCATGTGGGTTGGGTTG 61.819 60.000 0.54 0.00 39.65 3.77
5343 7901 2.582493 GCCATGTGGGTTGGGTTGG 61.582 63.158 0.54 0.00 39.65 3.77
5344 7902 1.912763 CCATGTGGGTTGGGTTGGG 60.913 63.158 0.00 0.00 0.00 4.12
5345 7903 1.152355 CATGTGGGTTGGGTTGGGT 60.152 57.895 0.00 0.00 0.00 4.51
5348 7906 2.137528 GTGGGTTGGGTTGGGTTGG 61.138 63.158 0.00 0.00 0.00 3.77
5349 7907 2.525629 GGGTTGGGTTGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
5350 7908 3.238497 GGTTGGGTTGGGTTGGGC 61.238 66.667 0.00 0.00 0.00 5.36
5351 7909 3.238497 GTTGGGTTGGGTTGGGCC 61.238 66.667 0.00 0.00 0.00 5.80
5352 7910 3.443479 TTGGGTTGGGTTGGGCCT 61.443 61.111 4.53 0.00 37.43 5.19
5353 7911 3.028223 TTGGGTTGGGTTGGGCCTT 62.028 57.895 4.53 0.00 37.43 4.35
5373 7931 5.678616 GCCTTTGTAGTGCTTTCAGTTTCAA 60.679 40.000 0.00 0.00 0.00 2.69
5407 7965 3.555956 CAGCAACTTTACCTATAGCGGTG 59.444 47.826 0.00 0.00 37.93 4.94
5425 7983 1.228154 GAAGTGGGCCTTGGTCGTT 60.228 57.895 4.53 0.00 32.03 3.85
5426 7984 0.822121 GAAGTGGGCCTTGGTCGTTT 60.822 55.000 4.53 0.00 32.03 3.60
5447 8005 0.523072 CCATGAAACTGAAGTGGGCG 59.477 55.000 0.00 0.00 0.00 6.13
5452 8010 0.535102 AAACTGAAGTGGGCGGTGAG 60.535 55.000 0.00 0.00 0.00 3.51
5453 8011 1.696097 AACTGAAGTGGGCGGTGAGT 61.696 55.000 0.00 0.00 0.00 3.41
5454 8012 1.669115 CTGAAGTGGGCGGTGAGTG 60.669 63.158 0.00 0.00 0.00 3.51
5458 8016 2.668550 GTGGGCGGTGAGTGGTTC 60.669 66.667 0.00 0.00 0.00 3.62
5465 8023 1.966451 GGTGAGTGGTTCGGCCTTG 60.966 63.158 0.00 0.00 38.35 3.61
5468 8026 1.376037 GAGTGGTTCGGCCTTGGAG 60.376 63.158 0.00 0.00 38.35 3.86
5486 8178 7.196331 CCTTGGAGTTTTGAAGTAGAAGTTTG 58.804 38.462 0.00 0.00 0.00 2.93
5500 8192 4.855340 AGAAGTTTGAACCTGTTTCTCCA 58.145 39.130 0.00 0.00 34.97 3.86
5501 8193 4.884164 AGAAGTTTGAACCTGTTTCTCCAG 59.116 41.667 0.00 0.00 34.97 3.86
5502 8194 4.236527 AGTTTGAACCTGTTTCTCCAGT 57.763 40.909 0.00 0.00 34.97 4.00
5503 8195 4.600062 AGTTTGAACCTGTTTCTCCAGTT 58.400 39.130 0.00 0.00 34.97 3.16
5504 8196 5.751586 AGTTTGAACCTGTTTCTCCAGTTA 58.248 37.500 0.00 0.00 34.97 2.24
5505 8197 6.365520 AGTTTGAACCTGTTTCTCCAGTTAT 58.634 36.000 0.00 0.00 34.97 1.89
5506 8198 6.833933 AGTTTGAACCTGTTTCTCCAGTTATT 59.166 34.615 0.00 0.00 34.97 1.40
5507 8199 7.996644 AGTTTGAACCTGTTTCTCCAGTTATTA 59.003 33.333 0.00 0.00 34.97 0.98
5508 8200 8.626526 GTTTGAACCTGTTTCTCCAGTTATTAA 58.373 33.333 0.00 0.00 34.97 1.40
5509 8201 8.754991 TTGAACCTGTTTCTCCAGTTATTAAA 57.245 30.769 0.00 0.00 34.97 1.52
5510 8202 8.754991 TGAACCTGTTTCTCCAGTTATTAAAA 57.245 30.769 0.00 0.00 34.97 1.52
5511 8203 9.191479 TGAACCTGTTTCTCCAGTTATTAAAAA 57.809 29.630 0.00 0.00 34.97 1.94
5544 8236 0.179468 TGGTTTACAGCGGGATAGCC 59.821 55.000 0.00 0.00 38.01 3.93
5577 8269 3.757184 CAAAAGCCCAAACAAAAACAGC 58.243 40.909 0.00 0.00 0.00 4.40
5586 8278 4.444056 CCAAACAAAAACAGCGGAATAGTG 59.556 41.667 0.00 0.00 0.00 2.74
5608 8354 6.615726 AGTGGAAAGGAGCTAGTGGAATATTA 59.384 38.462 0.00 0.00 0.00 0.98
5609 8355 6.931840 GTGGAAAGGAGCTAGTGGAATATTAG 59.068 42.308 0.00 0.00 0.00 1.73
5618 8364 5.105837 GCTAGTGGAATATTAGACTACCCGG 60.106 48.000 0.00 0.00 0.00 5.73
5619 8365 3.577415 AGTGGAATATTAGACTACCCGGC 59.423 47.826 0.00 0.00 0.00 6.13
5622 8437 3.256631 GGAATATTAGACTACCCGGCGAA 59.743 47.826 9.30 0.00 0.00 4.70
5623 8438 4.081807 GGAATATTAGACTACCCGGCGAAT 60.082 45.833 9.30 0.00 0.00 3.34
5624 8439 5.476614 GAATATTAGACTACCCGGCGAATT 58.523 41.667 9.30 0.00 0.00 2.17
5643 8458 5.452496 CGAATTGACCTGGTCAGATAGATGT 60.452 44.000 26.94 10.14 43.69 3.06
5650 8465 5.899547 ACCTGGTCAGATAGATGTCACATAA 59.100 40.000 0.00 0.00 0.00 1.90
5678 8493 9.434275 TTTTCTCACCTATATACAGGAGATTGA 57.566 33.333 3.44 0.00 39.18 2.57
5690 8505 4.287067 ACAGGAGATTGAGCAGAAAGGTTA 59.713 41.667 0.00 0.00 0.00 2.85
5708 8523 9.750125 GAAAGGTTATCATTTGGCTTATTAAGG 57.250 33.333 5.61 0.00 0.00 2.69
5709 8524 8.838649 AAGGTTATCATTTGGCTTATTAAGGT 57.161 30.769 5.61 0.00 0.00 3.50
5712 8527 7.505923 GGTTATCATTTGGCTTATTAAGGTCCT 59.494 37.037 5.61 0.00 0.00 3.85
5713 8528 6.966534 ATCATTTGGCTTATTAAGGTCCTG 57.033 37.500 5.61 0.00 0.00 3.86
5717 8532 3.869065 TGGCTTATTAAGGTCCTGTTCG 58.131 45.455 5.61 0.00 0.00 3.95
5719 8534 3.118519 GGCTTATTAAGGTCCTGTTCGGA 60.119 47.826 5.61 0.00 40.30 4.55
5720 8535 4.510571 GCTTATTAAGGTCCTGTTCGGAA 58.489 43.478 5.61 0.00 45.32 4.30
5722 8537 5.236695 GCTTATTAAGGTCCTGTTCGGAATC 59.763 44.000 5.61 0.00 45.32 2.52
5723 8538 3.622166 TTAAGGTCCTGTTCGGAATCC 57.378 47.619 0.00 0.00 45.32 3.01
5725 8540 0.546747 AGGTCCTGTTCGGAATCCCA 60.547 55.000 0.00 0.00 45.32 4.37
5726 8541 0.392595 GGTCCTGTTCGGAATCCCAC 60.393 60.000 0.00 0.00 45.32 4.61
5727 8542 0.392595 GTCCTGTTCGGAATCCCACC 60.393 60.000 0.00 0.00 45.32 4.61
5728 8543 0.546747 TCCTGTTCGGAATCCCACCT 60.547 55.000 0.00 0.00 39.40 4.00
5729 8544 0.392998 CCTGTTCGGAATCCCACCTG 60.393 60.000 0.00 0.00 33.16 4.00
5730 8545 1.002624 TGTTCGGAATCCCACCTGC 60.003 57.895 0.00 0.00 0.00 4.85
5731 8546 1.299976 GTTCGGAATCCCACCTGCT 59.700 57.895 0.00 0.00 0.00 4.24
5732 8547 0.744771 GTTCGGAATCCCACCTGCTC 60.745 60.000 0.00 0.00 0.00 4.26
5733 8548 1.910580 TTCGGAATCCCACCTGCTCC 61.911 60.000 0.00 0.00 0.00 4.70
5734 8549 2.669133 CGGAATCCCACCTGCTCCA 61.669 63.158 0.00 0.00 0.00 3.86
5735 8550 1.077429 GGAATCCCACCTGCTCCAC 60.077 63.158 0.00 0.00 0.00 4.02
5736 8551 1.685224 GAATCCCACCTGCTCCACA 59.315 57.895 0.00 0.00 0.00 4.17
5737 8552 0.038166 GAATCCCACCTGCTCCACAA 59.962 55.000 0.00 0.00 0.00 3.33
5738 8553 0.482446 AATCCCACCTGCTCCACAAA 59.518 50.000 0.00 0.00 0.00 2.83
5739 8554 0.482446 ATCCCACCTGCTCCACAAAA 59.518 50.000 0.00 0.00 0.00 2.44
5740 8555 0.482446 TCCCACCTGCTCCACAAAAT 59.518 50.000 0.00 0.00 0.00 1.82
5741 8556 1.707989 TCCCACCTGCTCCACAAAATA 59.292 47.619 0.00 0.00 0.00 1.40
5742 8557 2.094675 CCCACCTGCTCCACAAAATAG 58.905 52.381 0.00 0.00 0.00 1.73
5743 8558 1.474077 CCACCTGCTCCACAAAATAGC 59.526 52.381 0.00 0.00 36.77 2.97
5744 8559 2.161855 CACCTGCTCCACAAAATAGCA 58.838 47.619 0.00 0.00 43.66 3.49
5747 8562 2.877097 TGCTCCACAAAATAGCAGGA 57.123 45.000 0.00 0.00 41.15 3.86
5748 8563 2.715046 TGCTCCACAAAATAGCAGGAG 58.285 47.619 0.00 0.00 46.71 3.69
5768 8583 2.946762 GTGGAGCCACGAAACAGC 59.053 61.111 3.57 0.00 37.19 4.40
5769 8584 2.281484 TGGAGCCACGAAACAGCC 60.281 61.111 0.00 0.00 0.00 4.85
5770 8585 3.423154 GGAGCCACGAAACAGCCG 61.423 66.667 0.00 0.00 0.00 5.52
5771 8586 4.090057 GAGCCACGAAACAGCCGC 62.090 66.667 0.00 0.00 0.00 6.53
5772 8587 4.626081 AGCCACGAAACAGCCGCT 62.626 61.111 0.00 0.00 0.00 5.52
5773 8588 4.090057 GCCACGAAACAGCCGCTC 62.090 66.667 0.00 0.00 0.00 5.03
5774 8589 3.423154 CCACGAAACAGCCGCTCC 61.423 66.667 0.00 0.00 0.00 4.70
5775 8590 3.777925 CACGAAACAGCCGCTCCG 61.778 66.667 0.00 0.00 0.00 4.63
5778 8593 3.127533 GAAACAGCCGCTCCGCAT 61.128 61.111 0.00 0.00 0.00 4.73
5779 8594 2.672996 AAACAGCCGCTCCGCATT 60.673 55.556 0.00 0.00 0.00 3.56
5780 8595 2.200170 GAAACAGCCGCTCCGCATTT 62.200 55.000 0.00 0.00 0.00 2.32
5781 8596 1.805428 AAACAGCCGCTCCGCATTTT 61.805 50.000 0.00 0.00 0.00 1.82
5782 8597 1.805428 AACAGCCGCTCCGCATTTTT 61.805 50.000 0.00 0.00 0.00 1.94
5798 8613 1.670791 TTTTTCACCGTGACTCCACC 58.329 50.000 0.00 0.00 40.12 4.61
5799 8614 0.179040 TTTTCACCGTGACTCCACCC 60.179 55.000 0.00 0.00 40.12 4.61
5800 8615 2.372040 TTTCACCGTGACTCCACCCG 62.372 60.000 0.00 0.00 40.12 5.28
5801 8616 3.612681 CACCGTGACTCCACCCGT 61.613 66.667 0.00 0.00 40.12 5.28
5802 8617 3.612681 ACCGTGACTCCACCCGTG 61.613 66.667 0.00 0.00 40.12 4.94
5805 8620 3.936203 GTGACTCCACCCGTGCCA 61.936 66.667 0.00 0.00 37.33 4.92
5806 8621 3.625897 TGACTCCACCCGTGCCAG 61.626 66.667 0.00 0.00 0.00 4.85
5807 8622 4.394712 GACTCCACCCGTGCCAGG 62.395 72.222 0.00 0.00 0.00 4.45
5808 8623 4.954118 ACTCCACCCGTGCCAGGA 62.954 66.667 0.00 0.00 0.00 3.86
5809 8624 4.087892 CTCCACCCGTGCCAGGAG 62.088 72.222 0.00 0.00 41.43 3.69
5810 8625 4.954118 TCCACCCGTGCCAGGAGT 62.954 66.667 0.00 0.00 0.00 3.85
5811 8626 4.704833 CCACCCGTGCCAGGAGTG 62.705 72.222 0.00 0.00 34.43 3.51
5833 8648 1.503294 GCTATGGAGCGAAGGTAAGC 58.497 55.000 0.00 0.00 39.88 3.09
5835 8650 2.748605 CTATGGAGCGAAGGTAAGCTG 58.251 52.381 0.00 0.00 44.69 4.24
5836 8651 1.195115 ATGGAGCGAAGGTAAGCTGA 58.805 50.000 0.00 0.00 44.69 4.26
5837 8652 0.973632 TGGAGCGAAGGTAAGCTGAA 59.026 50.000 0.00 0.00 44.69 3.02
5838 8653 1.337823 TGGAGCGAAGGTAAGCTGAAC 60.338 52.381 0.00 0.00 44.69 3.18
5839 8654 1.337823 GGAGCGAAGGTAAGCTGAACA 60.338 52.381 0.00 0.00 44.69 3.18
5840 8655 1.996191 GAGCGAAGGTAAGCTGAACAG 59.004 52.381 0.00 0.00 44.69 3.16
5841 8656 1.079503 GCGAAGGTAAGCTGAACAGG 58.920 55.000 3.99 0.00 0.00 4.00
5842 8657 1.726853 CGAAGGTAAGCTGAACAGGG 58.273 55.000 3.99 0.00 0.00 4.45
5843 8658 1.676014 CGAAGGTAAGCTGAACAGGGG 60.676 57.143 3.99 0.00 0.00 4.79
5844 8659 0.038310 AAGGTAAGCTGAACAGGGGC 59.962 55.000 3.99 0.00 0.00 5.80
5845 8660 0.842467 AGGTAAGCTGAACAGGGGCT 60.842 55.000 3.99 0.00 37.99 5.19
5846 8661 0.678048 GGTAAGCTGAACAGGGGCTG 60.678 60.000 3.99 0.00 36.37 4.85
5889 8704 7.431376 CCATTTCATCATCGAGATTTGAAGTTG 59.569 37.037 0.00 1.02 33.72 3.16
5990 8806 1.134877 CACATCGTCATGCTCCTCTGT 60.135 52.381 0.00 0.00 32.57 3.41
6007 13645 4.822350 CCTCTGTTACTCGATATGGTCTCA 59.178 45.833 0.00 0.00 0.00 3.27
6011 13649 4.202020 TGTTACTCGATATGGTCTCAGCAC 60.202 45.833 0.00 0.00 0.00 4.40
6013 13651 1.000283 CTCGATATGGTCTCAGCACCC 60.000 57.143 0.00 0.00 35.26 4.61
6030 13668 4.415332 CGCCTCGTGCTACCGTGT 62.415 66.667 0.00 0.00 38.05 4.49
6040 13678 4.209703 TCGTGCTACCGTGTTTTCTTTTAG 59.790 41.667 0.00 0.00 0.00 1.85
6051 13689 6.458342 CGTGTTTTCTTTTAGCTCCAACTTCT 60.458 38.462 0.00 0.00 0.00 2.85
6053 13691 6.828785 TGTTTTCTTTTAGCTCCAACTTCTCT 59.171 34.615 0.00 0.00 0.00 3.10
6059 13697 2.544721 AGCTCCAACTTCTCTGATCCA 58.455 47.619 0.00 0.00 0.00 3.41
6065 13703 5.523588 TCCAACTTCTCTGATCCAGACTAT 58.476 41.667 0.00 0.00 35.39 2.12
6104 13742 2.082140 TCCAGGGTGACGCATACTAT 57.918 50.000 1.61 0.00 0.00 2.12
6109 13747 2.764010 AGGGTGACGCATACTATGACAA 59.236 45.455 1.61 0.00 0.00 3.18
6140 13778 6.005823 TCACATGATCCAACTCACAAGAAAT 58.994 36.000 0.00 0.00 0.00 2.17
6144 13782 2.238521 TCCAACTCACAAGAAATGGCC 58.761 47.619 0.00 0.00 0.00 5.36
6151 13789 3.956199 CTCACAAGAAATGGCCATGGTAT 59.044 43.478 21.63 4.82 0.00 2.73
6168 13806 4.842574 TGGTATAAGCATCAAGAACAGCA 58.157 39.130 0.00 0.00 0.00 4.41
6170 13808 5.297527 TGGTATAAGCATCAAGAACAGCATG 59.702 40.000 0.00 0.00 46.00 4.06
6173 13811 1.005097 AGCATCAAGAACAGCATGGGA 59.995 47.619 0.00 0.00 43.62 4.37
6179 13817 1.078848 GAACAGCATGGGACGAGCT 60.079 57.895 0.00 0.00 43.62 4.09
6215 13856 2.665000 CCGCTGTGGGATGTCACT 59.335 61.111 0.00 0.00 38.40 3.41
6236 13877 4.742201 GAGCTCGCCCGCTTCACA 62.742 66.667 0.00 0.00 41.08 3.58
6274 14492 6.586344 TCCAAATCAAGGTAAACAATGCAAA 58.414 32.000 0.00 0.00 0.00 3.68
6307 14525 0.690192 TTGACATTCTTCCTCGGGCA 59.310 50.000 0.00 0.00 0.00 5.36
6315 14533 1.971357 TCTTCCTCGGGCATTATCCTC 59.029 52.381 0.00 0.00 0.00 3.71
6318 14536 1.293498 CTCGGGCATTATCCTCCGG 59.707 63.158 0.00 0.00 42.44 5.14
6319 14537 1.458777 TCGGGCATTATCCTCCGGT 60.459 57.895 0.00 0.00 42.44 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 1213 0.904865 TGAGAAGGATGGAGCGGTGT 60.905 55.000 0.00 0.00 0.00 4.16
263 1239 1.753649 TGTCTCTGCTGCTGGAGATAC 59.246 52.381 21.44 18.74 39.88 2.24
288 1264 7.807977 AATTGGAAAAGATATAGCATGTCGT 57.192 32.000 0.00 0.00 0.00 4.34
375 1352 1.343176 GGCAGGAGGTAGGGAGTAACT 60.343 57.143 0.00 0.00 0.00 2.24
381 1358 2.547123 GAAGGGGCAGGAGGTAGGGA 62.547 65.000 0.00 0.00 0.00 4.20
385 1362 0.417841 AAGAGAAGGGGCAGGAGGTA 59.582 55.000 0.00 0.00 0.00 3.08
386 1363 0.912006 GAAGAGAAGGGGCAGGAGGT 60.912 60.000 0.00 0.00 0.00 3.85
387 1364 0.620121 AGAAGAGAAGGGGCAGGAGG 60.620 60.000 0.00 0.00 0.00 4.30
388 1365 2.038659 CTAGAAGAGAAGGGGCAGGAG 58.961 57.143 0.00 0.00 0.00 3.69
390 1367 0.467804 GCTAGAAGAGAAGGGGCAGG 59.532 60.000 0.00 0.00 0.00 4.85
391 1368 1.134551 GTGCTAGAAGAGAAGGGGCAG 60.135 57.143 0.00 0.00 0.00 4.85
392 1369 0.905357 GTGCTAGAAGAGAAGGGGCA 59.095 55.000 0.00 0.00 0.00 5.36
393 1370 0.905357 TGTGCTAGAAGAGAAGGGGC 59.095 55.000 0.00 0.00 0.00 5.80
394 1371 3.539604 CATTGTGCTAGAAGAGAAGGGG 58.460 50.000 0.00 0.00 0.00 4.79
413 1390 2.890945 GGTTTGCCAGAGTTACAACCAT 59.109 45.455 0.00 0.00 34.09 3.55
453 1430 2.099141 GCAACCAGCTGTGTATCTCA 57.901 50.000 13.81 0.00 41.15 3.27
545 1524 0.535335 GGTGCGAAGGAGATGGTGTA 59.465 55.000 0.00 0.00 0.00 2.90
567 1546 3.041211 TCTGCAATAGAGCCACCTACAT 58.959 45.455 0.00 0.00 0.00 2.29
570 1549 4.225042 TCTTTTCTGCAATAGAGCCACCTA 59.775 41.667 0.00 0.00 36.61 3.08
572 1551 3.347216 TCTTTTCTGCAATAGAGCCACC 58.653 45.455 0.00 0.00 36.61 4.61
573 1552 5.376854 TTTCTTTTCTGCAATAGAGCCAC 57.623 39.130 0.00 0.00 36.61 5.01
630 1609 0.660300 GAAACAAAGGCCGTCTTGCG 60.660 55.000 13.30 0.00 35.55 4.85
635 1614 2.469826 CCTTTTGAAACAAAGGCCGTC 58.530 47.619 0.00 0.00 39.09 4.79
667 1646 4.377431 CGTTTTCTTTTCCATCAGAGGTCG 60.377 45.833 0.00 0.00 0.00 4.79
799 1784 1.273098 ACTCAACCGGATGGAGGTAGT 60.273 52.381 9.46 2.27 41.95 2.73
806 1791 2.084546 GAAGGAAACTCAACCGGATGG 58.915 52.381 9.46 3.25 42.68 3.51
810 1795 0.608308 GGGGAAGGAAACTCAACCGG 60.608 60.000 0.00 0.00 42.68 5.28
820 1805 0.323629 CGCTTGTACAGGGGAAGGAA 59.676 55.000 15.90 0.00 0.00 3.36
821 1806 0.543410 TCGCTTGTACAGGGGAAGGA 60.543 55.000 20.31 0.06 36.07 3.36
822 1807 0.108138 CTCGCTTGTACAGGGGAAGG 60.108 60.000 22.24 10.61 36.07 3.46
823 1808 0.895530 TCTCGCTTGTACAGGGGAAG 59.104 55.000 22.24 16.55 36.07 3.46
824 1809 1.344065 TTCTCGCTTGTACAGGGGAA 58.656 50.000 22.24 12.53 36.07 3.97
828 1813 1.929836 GCTCATTCTCGCTTGTACAGG 59.070 52.381 0.00 0.00 0.00 4.00
829 1814 1.929836 GGCTCATTCTCGCTTGTACAG 59.070 52.381 0.00 0.00 0.00 2.74
936 2090 4.475135 GAGTCTTGCGGAGGGGGC 62.475 72.222 0.00 0.00 0.00 5.80
1016 2184 0.649992 AGAATGAGATGGGGAGGGGA 59.350 55.000 0.00 0.00 0.00 4.81
1020 2188 2.983296 ACCCTAGAATGAGATGGGGAG 58.017 52.381 0.11 0.00 42.00 4.30
1021 2189 3.438131 AACCCTAGAATGAGATGGGGA 57.562 47.619 0.11 0.00 42.00 4.81
1022 2190 4.042187 CCTAAACCCTAGAATGAGATGGGG 59.958 50.000 0.00 0.00 42.00 4.96
1091 2262 3.003763 AGGAGGAGGCGGTGGTTC 61.004 66.667 0.00 0.00 0.00 3.62
1471 2648 2.171079 GCGGAAATCGGTGATCGCA 61.171 57.895 8.82 0.00 42.27 5.10
1472 2649 2.626455 GCGGAAATCGGTGATCGC 59.374 61.111 0.00 0.00 39.69 4.58
1479 2656 1.068250 GAGGAGGAGCGGAAATCGG 59.932 63.158 0.00 0.00 39.69 4.18
1480 2657 0.249238 CAGAGGAGGAGCGGAAATCG 60.249 60.000 0.00 0.00 42.76 3.34
1481 2658 0.827368 ACAGAGGAGGAGCGGAAATC 59.173 55.000 0.00 0.00 0.00 2.17
1482 2659 1.757699 GTACAGAGGAGGAGCGGAAAT 59.242 52.381 0.00 0.00 0.00 2.17
1486 2663 0.681564 ACAGTACAGAGGAGGAGCGG 60.682 60.000 0.00 0.00 0.00 5.52
1495 2672 3.302805 CGATCAGCGAGTACAGTACAGAG 60.303 52.174 13.37 4.85 44.57 3.35
1511 2688 2.094894 CCAAACACTAGCAAGCGATCAG 59.905 50.000 0.00 0.00 0.00 2.90
1512 2689 2.076100 CCAAACACTAGCAAGCGATCA 58.924 47.619 0.00 0.00 0.00 2.92
1516 2693 0.951558 AACCCAAACACTAGCAAGCG 59.048 50.000 0.00 0.00 0.00 4.68
1552 2731 1.059942 GCAATTAAACGTGGCAGTGC 58.940 50.000 6.55 6.55 0.00 4.40
1559 2738 3.911365 TCATTTCAGCGCAATTAAACGTG 59.089 39.130 11.47 0.00 0.00 4.49
1565 2744 7.544915 TCATTTCATTTCATTTCAGCGCAATTA 59.455 29.630 11.47 0.00 0.00 1.40
1574 2753 8.310382 ACCCGTAATTCATTTCATTTCATTTCA 58.690 29.630 0.00 0.00 0.00 2.69
1575 2754 8.702163 ACCCGTAATTCATTTCATTTCATTTC 57.298 30.769 0.00 0.00 0.00 2.17
1576 2755 9.801873 CTACCCGTAATTCATTTCATTTCATTT 57.198 29.630 0.00 0.00 0.00 2.32
1577 2756 9.184523 TCTACCCGTAATTCATTTCATTTCATT 57.815 29.630 0.00 0.00 0.00 2.57
1641 2820 8.861086 AGTCATGTGTTCCTTTCGTATCTATAT 58.139 33.333 0.00 0.00 0.00 0.86
1713 2892 2.508526 AGCAGGGCTAACTTCAACTTG 58.491 47.619 0.00 0.00 36.99 3.16
1736 2915 6.338146 TCCACTAGACACTTAATTTGATCCG 58.662 40.000 0.00 0.00 0.00 4.18
1774 2953 3.704566 AGTGGTCAGAGTTTACAGTGTCA 59.295 43.478 0.00 0.00 0.00 3.58
1839 3018 7.310113 GCTACTAATGTAGTGATCCCTAGCAAT 60.310 40.741 5.31 0.00 45.84 3.56
1840 3019 6.015350 GCTACTAATGTAGTGATCCCTAGCAA 60.015 42.308 5.31 0.00 45.84 3.91
1853 3032 9.740239 TGGAACTATAAAACGCTACTAATGTAG 57.260 33.333 0.00 0.00 46.59 2.74
1854 3033 9.740239 CTGGAACTATAAAACGCTACTAATGTA 57.260 33.333 0.00 0.00 0.00 2.29
1855 3034 8.255905 ACTGGAACTATAAAACGCTACTAATGT 58.744 33.333 0.00 0.00 0.00 2.71
1917 3098 5.232463 TCTAGGACACGACAACATAAAACC 58.768 41.667 0.00 0.00 0.00 3.27
1952 3133 4.217767 TCGAAATACGGATGGATACTCAGG 59.782 45.833 0.00 0.00 42.82 3.86
1974 3155 2.012673 AGAAAATGGAGCGATGCACTC 58.987 47.619 0.00 0.00 0.00 3.51
2183 3364 4.703897 AGCAGAACACAGCAGTAAAGTAA 58.296 39.130 0.00 0.00 0.00 2.24
2265 3446 2.421739 GCTCCACACACACTCGGT 59.578 61.111 0.00 0.00 0.00 4.69
2319 3504 6.044682 CCCAGGATTTTGTCATTTTATCAGC 58.955 40.000 0.00 0.00 0.00 4.26
2399 3584 5.032327 AGCTCAGATTGCATATTCAGTCA 57.968 39.130 1.12 0.00 0.00 3.41
2441 3626 7.806690 TGAAGTAAACATAAGCATCAGTTCAC 58.193 34.615 0.00 0.00 0.00 3.18
2480 3665 5.826737 AGAATATCAGATCAACAAAGGCCTG 59.173 40.000 5.69 0.00 0.00 4.85
2505 3690 5.819825 AGTCTTCAAAAGTCACAAGGAAC 57.180 39.130 0.00 0.00 0.00 3.62
2526 3714 2.527100 ACTTCGTTCGATTAGCGGAAG 58.473 47.619 5.99 5.99 39.84 3.46
2554 3742 1.396301 GTACAGCAGAATGAGCAGCAC 59.604 52.381 0.00 0.00 39.69 4.40
2557 3745 4.111198 CACTAGTACAGCAGAATGAGCAG 58.889 47.826 0.00 0.00 39.69 4.24
2634 3822 3.004002 TGTGATGCAAGAGAAACAAGCAG 59.996 43.478 0.00 0.00 38.75 4.24
2804 3994 7.041712 GGTTTGGTTTGTTCAACTTTCTTTTCA 60.042 33.333 0.00 0.00 35.46 2.69
2917 4107 7.068593 ACAGGCATAGCACAAACAATGTAATAT 59.931 33.333 0.00 0.00 41.46 1.28
3093 4284 6.269077 TGTCAGAAAGGTGTCCTTGTTAGATA 59.731 38.462 1.62 0.00 43.92 1.98
3611 4807 0.835941 ATCCATTCGCCTTCTCAGCT 59.164 50.000 0.00 0.00 0.00 4.24
3695 4891 1.207593 CGGCTGCAAGTGTTAGTGC 59.792 57.895 0.50 0.00 41.29 4.40
3713 4909 7.414814 TTTTCTGCCCAATTCGAATAAAAAC 57.585 32.000 11.83 1.37 0.00 2.43
3722 4918 3.591196 TGGATTTTTCTGCCCAATTCG 57.409 42.857 0.00 0.00 0.00 3.34
3812 5008 5.251700 AGGTCAAACCATCCAACTTCTCTAT 59.748 40.000 0.00 0.00 41.95 1.98
4114 6546 7.989416 AGATTACGAGTAGAGATAAGGAAGG 57.011 40.000 0.00 0.00 0.00 3.46
4119 6551 9.820229 CAAGCTTAGATTACGAGTAGAGATAAG 57.180 37.037 0.00 0.00 0.00 1.73
4145 6577 2.536761 TGTGCAACTACCAGGTACAC 57.463 50.000 10.05 10.05 38.04 2.90
4226 6658 6.860080 AGGCAAACAGACAAAGATGATATTG 58.140 36.000 0.00 0.00 0.00 1.90
4240 6673 3.181476 GCAAAAAGAGGAAGGCAAACAGA 60.181 43.478 0.00 0.00 0.00 3.41
4271 6704 4.148128 AGTAGATCCTCAGGCACAAATG 57.852 45.455 0.00 0.00 0.00 2.32
4473 6911 5.046448 TCAGTGCAAATAAATGCCAAGGAAT 60.046 36.000 0.00 0.00 45.83 3.01
4617 7103 6.369615 CCTTGATTCACATGAATTCCAAAACC 59.630 38.462 8.47 0.00 44.14 3.27
4627 7113 7.720957 CCATATAACCTCCTTGATTCACATGAA 59.279 37.037 0.00 0.00 38.56 2.57
4691 7177 8.075761 AGAATATGTAGGTTTCGGTAGAAAGT 57.924 34.615 0.00 0.00 45.92 2.66
4720 7206 4.036616 GGTTGTAAAGCCAAACTACCGAAA 59.963 41.667 0.00 0.00 38.67 3.46
4721 7207 3.565063 GGTTGTAAAGCCAAACTACCGAA 59.435 43.478 0.00 0.00 38.67 4.30
4737 7224 4.503910 CAAAGAGATGATCACGGGTTGTA 58.496 43.478 0.00 0.00 0.00 2.41
4803 7292 1.048601 TTGAGGACTGTCCACCAGAC 58.951 55.000 27.48 11.94 44.49 3.51
4852 7341 2.365408 GACGAAATGTCCCGAGACTT 57.635 50.000 0.00 0.00 43.91 3.01
4892 7382 0.918983 TCATTAGGACCAGCCAAGGG 59.081 55.000 0.00 0.00 40.02 3.95
4954 7448 1.221466 TGTCCTTGCGCTTGAAGTCG 61.221 55.000 9.73 4.99 0.00 4.18
4993 7487 0.261696 AACTTGGTGTCTTGGGGCTT 59.738 50.000 0.00 0.00 0.00 4.35
5040 7534 2.494530 CCGCCTCTGCTACCTCCTC 61.495 68.421 0.00 0.00 34.43 3.71
5054 7548 2.413765 CGGTCTTCTAGCTCCGCC 59.586 66.667 0.00 0.00 36.68 6.13
5055 7549 2.065906 CTCCGGTCTTCTAGCTCCGC 62.066 65.000 0.00 0.00 41.38 5.54
5056 7550 0.464013 TCTCCGGTCTTCTAGCTCCG 60.464 60.000 0.00 2.41 42.22 4.63
5068 7562 2.363147 GAGAGCAGGGTCTCCGGT 60.363 66.667 15.73 0.00 37.59 5.28
5135 7629 8.844244 CAGCCTGAGTATTTAGCAAAAGAATAT 58.156 33.333 0.00 0.00 0.00 1.28
5188 7705 6.441088 AATCTTGAAAGTGGTCTCTACCTT 57.559 37.500 0.00 0.00 46.91 3.50
5220 7737 2.700897 GCTGGAGGTTAAGGCAGAGATA 59.299 50.000 0.00 0.00 0.00 1.98
5307 7852 5.884232 ACATGGCAGCATAAATATCATCGAT 59.116 36.000 0.00 0.00 0.00 3.59
5309 7854 5.329493 CACATGGCAGCATAAATATCATCG 58.671 41.667 0.00 0.00 0.00 3.84
5324 7882 1.836158 CAACCCAACCCACATGGCA 60.836 57.895 0.00 0.00 37.83 4.92
5327 7885 0.762461 AACCCAACCCAACCCACATG 60.762 55.000 0.00 0.00 0.00 3.21
5328 7886 0.762461 CAACCCAACCCAACCCACAT 60.762 55.000 0.00 0.00 0.00 3.21
5329 7887 1.381872 CAACCCAACCCAACCCACA 60.382 57.895 0.00 0.00 0.00 4.17
5330 7888 2.137528 CCAACCCAACCCAACCCAC 61.138 63.158 0.00 0.00 0.00 4.61
5332 7890 2.525629 CCCAACCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
5333 7891 3.238497 GCCCAACCCAACCCAACC 61.238 66.667 0.00 0.00 0.00 3.77
5334 7892 3.238497 GGCCCAACCCAACCCAAC 61.238 66.667 0.00 0.00 0.00 3.77
5336 7894 3.028223 AAAGGCCCAACCCAACCCA 62.028 57.895 0.00 0.00 40.58 4.51
5337 7895 2.122592 AAAGGCCCAACCCAACCC 60.123 61.111 0.00 0.00 40.58 4.11
5338 7896 0.470268 TACAAAGGCCCAACCCAACC 60.470 55.000 0.00 0.00 40.58 3.77
5339 7897 0.966179 CTACAAAGGCCCAACCCAAC 59.034 55.000 0.00 0.00 40.58 3.77
5340 7898 0.558712 ACTACAAAGGCCCAACCCAA 59.441 50.000 0.00 0.00 40.58 4.12
5341 7899 0.178975 CACTACAAAGGCCCAACCCA 60.179 55.000 0.00 0.00 40.58 4.51
5342 7900 1.532604 GCACTACAAAGGCCCAACCC 61.533 60.000 0.00 0.00 40.58 4.11
5343 7901 0.539669 AGCACTACAAAGGCCCAACC 60.540 55.000 0.00 0.00 39.61 3.77
5344 7902 1.328279 AAGCACTACAAAGGCCCAAC 58.672 50.000 0.00 0.00 0.00 3.77
5345 7903 1.960689 GAAAGCACTACAAAGGCCCAA 59.039 47.619 0.00 0.00 0.00 4.12
5348 7906 2.230660 ACTGAAAGCACTACAAAGGCC 58.769 47.619 0.00 0.00 37.60 5.19
5349 7907 3.990318 AACTGAAAGCACTACAAAGGC 57.010 42.857 0.00 0.00 37.60 4.35
5350 7908 5.499139 TGAAACTGAAAGCACTACAAAGG 57.501 39.130 0.00 0.00 37.60 3.11
5351 7909 5.973565 CCTTGAAACTGAAAGCACTACAAAG 59.026 40.000 0.00 0.00 37.60 2.77
5352 7910 5.678616 GCCTTGAAACTGAAAGCACTACAAA 60.679 40.000 0.00 0.00 37.60 2.83
5353 7911 4.202010 GCCTTGAAACTGAAAGCACTACAA 60.202 41.667 0.00 0.00 37.60 2.41
5391 7949 4.369182 CCACTTCACCGCTATAGGTAAAG 58.631 47.826 1.04 0.00 43.58 1.85
5392 7950 3.133362 CCCACTTCACCGCTATAGGTAAA 59.867 47.826 1.04 0.00 43.89 2.01
5407 7965 0.822121 AAACGACCAAGGCCCACTTC 60.822 55.000 0.00 0.00 37.29 3.01
5425 7983 2.627699 GCCCACTTCAGTTTCATGGAAA 59.372 45.455 0.00 0.00 31.69 3.13
5426 7984 2.238521 GCCCACTTCAGTTTCATGGAA 58.761 47.619 0.00 0.00 31.69 3.53
5447 8005 1.966451 CAAGGCCGAACCACTCACC 60.966 63.158 0.00 0.00 43.14 4.02
5452 8010 0.822121 AAACTCCAAGGCCGAACCAC 60.822 55.000 0.00 0.00 43.14 4.16
5453 8011 0.106419 AAAACTCCAAGGCCGAACCA 60.106 50.000 0.00 0.00 43.14 3.67
5454 8012 0.313987 CAAAACTCCAAGGCCGAACC 59.686 55.000 0.00 0.00 39.61 3.62
5458 8016 1.318576 ACTTCAAAACTCCAAGGCCG 58.681 50.000 0.00 0.00 0.00 6.13
5465 8023 7.067129 AGGTTCAAACTTCTACTTCAAAACTCC 59.933 37.037 0.00 0.00 0.00 3.85
5468 8026 7.535997 ACAGGTTCAAACTTCTACTTCAAAAC 58.464 34.615 0.00 0.00 0.00 2.43
5515 8207 2.490991 GCTGTAAACCAGAGAAACGGT 58.509 47.619 0.00 0.00 44.49 4.83
5516 8208 1.459592 CGCTGTAAACCAGAGAAACGG 59.540 52.381 0.00 0.00 44.49 4.44
5517 8209 1.459592 CCGCTGTAAACCAGAGAAACG 59.540 52.381 0.00 0.00 44.49 3.60
5518 8210 1.804748 CCCGCTGTAAACCAGAGAAAC 59.195 52.381 0.00 0.00 44.49 2.78
5519 8211 1.695242 TCCCGCTGTAAACCAGAGAAA 59.305 47.619 0.00 0.00 44.49 2.52
5520 8212 1.344065 TCCCGCTGTAAACCAGAGAA 58.656 50.000 0.00 0.00 44.49 2.87
5521 8213 1.568504 ATCCCGCTGTAAACCAGAGA 58.431 50.000 0.00 0.00 44.49 3.10
5522 8214 2.803492 GCTATCCCGCTGTAAACCAGAG 60.803 54.545 0.00 0.00 44.49 3.35
5523 8215 1.138266 GCTATCCCGCTGTAAACCAGA 59.862 52.381 0.00 0.00 44.49 3.86
5524 8216 1.583054 GCTATCCCGCTGTAAACCAG 58.417 55.000 0.00 0.00 44.53 4.00
5525 8217 0.179468 GGCTATCCCGCTGTAAACCA 59.821 55.000 0.00 0.00 0.00 3.67
5538 8230 0.179073 TGCTGCTCCTTTCGGCTATC 60.179 55.000 0.00 0.00 36.79 2.08
5544 8236 0.387750 GGCTTTTGCTGCTCCTTTCG 60.388 55.000 0.00 0.00 46.54 3.46
5577 8269 2.990066 AGCTCCTTTCCACTATTCCG 57.010 50.000 0.00 0.00 0.00 4.30
5586 8278 7.015779 AGTCTAATATTCCACTAGCTCCTTTCC 59.984 40.741 0.00 0.00 0.00 3.13
5608 8354 0.175073 GTCAATTCGCCGGGTAGTCT 59.825 55.000 2.18 0.00 0.00 3.24
5609 8355 0.808847 GGTCAATTCGCCGGGTAGTC 60.809 60.000 2.18 0.00 0.00 2.59
5618 8364 2.029838 ATCTGACCAGGTCAATTCGC 57.970 50.000 23.11 0.00 42.26 4.70
5619 8365 4.655762 TCTATCTGACCAGGTCAATTCG 57.344 45.455 23.11 11.63 42.26 3.34
5622 8437 4.964897 TGACATCTATCTGACCAGGTCAAT 59.035 41.667 23.11 19.27 42.26 2.57
5623 8438 4.160439 GTGACATCTATCTGACCAGGTCAA 59.840 45.833 23.11 14.12 42.26 3.18
5624 8439 3.701542 GTGACATCTATCTGACCAGGTCA 59.298 47.826 21.68 21.68 40.50 4.02
5678 8493 4.347607 AGCCAAATGATAACCTTTCTGCT 58.652 39.130 0.00 0.00 0.00 4.24
5690 8505 6.435164 ACAGGACCTTAATAAGCCAAATGAT 58.565 36.000 0.00 0.00 0.00 2.45
5712 8527 1.002624 GCAGGTGGGATTCCGAACA 60.003 57.895 5.49 0.00 35.24 3.18
5713 8528 0.744771 GAGCAGGTGGGATTCCGAAC 60.745 60.000 0.00 0.00 35.24 3.95
5717 8532 1.077429 GTGGAGCAGGTGGGATTCC 60.077 63.158 0.00 0.00 0.00 3.01
5719 8534 0.482446 TTTGTGGAGCAGGTGGGATT 59.518 50.000 0.00 0.00 0.00 3.01
5720 8535 0.482446 TTTTGTGGAGCAGGTGGGAT 59.518 50.000 0.00 0.00 0.00 3.85
5722 8537 2.094675 CTATTTTGTGGAGCAGGTGGG 58.905 52.381 0.00 0.00 0.00 4.61
5723 8538 1.474077 GCTATTTTGTGGAGCAGGTGG 59.526 52.381 0.00 0.00 36.20 4.61
5725 8540 2.584835 TGCTATTTTGTGGAGCAGGT 57.415 45.000 0.00 0.00 41.18 4.00
5728 8543 2.715046 CTCCTGCTATTTTGTGGAGCA 58.285 47.619 0.00 0.00 43.74 4.26
5742 8557 4.025858 TGGCTCCACAGCTCCTGC 62.026 66.667 0.00 0.00 46.03 4.85
5743 8558 2.046507 GTGGCTCCACAGCTCCTG 60.047 66.667 13.81 0.00 46.03 3.86
5744 8559 3.699894 CGTGGCTCCACAGCTCCT 61.700 66.667 18.11 0.00 46.47 3.69
5745 8560 2.731691 TTTCGTGGCTCCACAGCTCC 62.732 60.000 18.11 0.00 46.47 4.70
5746 8561 1.301716 TTTCGTGGCTCCACAGCTC 60.302 57.895 18.11 0.00 46.47 4.09
5747 8562 1.598130 GTTTCGTGGCTCCACAGCT 60.598 57.895 18.11 0.00 46.47 4.24
5748 8563 1.845809 CTGTTTCGTGGCTCCACAGC 61.846 60.000 18.11 0.00 46.47 4.40
5749 8564 1.845809 GCTGTTTCGTGGCTCCACAG 61.846 60.000 18.11 11.09 46.47 3.66
5750 8565 1.891919 GCTGTTTCGTGGCTCCACA 60.892 57.895 18.11 3.90 46.47 4.17
5751 8566 2.617274 GGCTGTTTCGTGGCTCCAC 61.617 63.158 8.95 8.95 43.01 4.02
5752 8567 2.281484 GGCTGTTTCGTGGCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
5753 8568 3.423154 CGGCTGTTTCGTGGCTCC 61.423 66.667 0.00 0.00 0.00 4.70
5754 8569 4.090057 GCGGCTGTTTCGTGGCTC 62.090 66.667 0.00 0.00 0.00 4.70
5755 8570 4.626081 AGCGGCTGTTTCGTGGCT 62.626 61.111 0.00 0.00 0.00 4.75
5756 8571 4.090057 GAGCGGCTGTTTCGTGGC 62.090 66.667 7.50 0.00 0.00 5.01
5757 8572 3.423154 GGAGCGGCTGTTTCGTGG 61.423 66.667 7.50 0.00 0.00 4.94
5758 8573 3.777925 CGGAGCGGCTGTTTCGTG 61.778 66.667 7.50 0.00 0.00 4.35
5779 8594 1.670791 GGTGGAGTCACGGTGAAAAA 58.329 50.000 13.23 0.00 44.50 1.94
5780 8595 0.179040 GGGTGGAGTCACGGTGAAAA 60.179 55.000 13.23 0.00 44.50 2.29
5781 8596 1.448497 GGGTGGAGTCACGGTGAAA 59.552 57.895 13.23 0.00 44.50 2.69
5782 8597 2.863346 CGGGTGGAGTCACGGTGAA 61.863 63.158 13.23 0.00 44.50 3.18
5783 8598 3.299977 CGGGTGGAGTCACGGTGA 61.300 66.667 6.76 6.76 44.50 4.02
5784 8599 3.612681 ACGGGTGGAGTCACGGTG 61.613 66.667 0.56 0.56 44.50 4.94
5785 8600 3.612681 CACGGGTGGAGTCACGGT 61.613 66.667 0.00 0.00 44.50 4.83
5788 8603 3.883744 CTGGCACGGGTGGAGTCAC 62.884 68.421 0.43 0.00 42.91 3.67
5789 8604 3.625897 CTGGCACGGGTGGAGTCA 61.626 66.667 0.43 0.00 0.00 3.41
5798 8613 4.767255 GCTCCACTCCTGGCACGG 62.767 72.222 0.00 0.00 37.49 4.94
5799 8614 1.680522 ATAGCTCCACTCCTGGCACG 61.681 60.000 0.00 0.00 37.49 5.34
5800 8615 0.179062 CATAGCTCCACTCCTGGCAC 60.179 60.000 0.00 0.00 37.49 5.01
5801 8616 1.340399 CCATAGCTCCACTCCTGGCA 61.340 60.000 0.00 0.00 37.49 4.92
5802 8617 1.050988 TCCATAGCTCCACTCCTGGC 61.051 60.000 0.00 0.00 37.49 4.85
5803 8618 1.047002 CTCCATAGCTCCACTCCTGG 58.953 60.000 0.00 0.00 39.23 4.45
5804 8619 0.392336 GCTCCATAGCTCCACTCCTG 59.608 60.000 0.00 0.00 45.85 3.86
5805 8620 2.833244 GCTCCATAGCTCCACTCCT 58.167 57.895 0.00 0.00 45.85 3.69
5814 8629 1.069358 AGCTTACCTTCGCTCCATAGC 59.931 52.381 0.00 0.00 45.86 2.97
5815 8630 2.362397 TCAGCTTACCTTCGCTCCATAG 59.638 50.000 0.00 0.00 33.45 2.23
5816 8631 2.384828 TCAGCTTACCTTCGCTCCATA 58.615 47.619 0.00 0.00 33.45 2.74
5817 8632 1.195115 TCAGCTTACCTTCGCTCCAT 58.805 50.000 0.00 0.00 33.45 3.41
5818 8633 0.973632 TTCAGCTTACCTTCGCTCCA 59.026 50.000 0.00 0.00 33.45 3.86
5819 8634 1.337823 TGTTCAGCTTACCTTCGCTCC 60.338 52.381 0.00 0.00 33.45 4.70
5820 8635 1.996191 CTGTTCAGCTTACCTTCGCTC 59.004 52.381 0.00 0.00 33.45 5.03
5821 8636 1.338200 CCTGTTCAGCTTACCTTCGCT 60.338 52.381 0.00 0.00 36.83 4.93
5822 8637 1.079503 CCTGTTCAGCTTACCTTCGC 58.920 55.000 0.00 0.00 0.00 4.70
5823 8638 1.676014 CCCCTGTTCAGCTTACCTTCG 60.676 57.143 0.00 0.00 0.00 3.79
5824 8639 1.950954 GCCCCTGTTCAGCTTACCTTC 60.951 57.143 0.00 0.00 0.00 3.46
5825 8640 0.038310 GCCCCTGTTCAGCTTACCTT 59.962 55.000 0.00 0.00 0.00 3.50
5826 8641 0.842467 AGCCCCTGTTCAGCTTACCT 60.842 55.000 0.00 0.00 31.27 3.08
5827 8642 0.678048 CAGCCCCTGTTCAGCTTACC 60.678 60.000 0.00 0.00 33.70 2.85
5828 8643 0.036875 ACAGCCCCTGTTCAGCTTAC 59.963 55.000 0.00 0.00 42.59 2.34
5829 8644 2.463441 ACAGCCCCTGTTCAGCTTA 58.537 52.632 0.00 0.00 42.59 3.09
5830 8645 3.255032 ACAGCCCCTGTTCAGCTT 58.745 55.556 0.00 0.00 42.59 3.74
5838 8653 0.896940 AGCAATGTCAACAGCCCCTG 60.897 55.000 0.00 0.00 37.52 4.45
5839 8654 0.698238 TAGCAATGTCAACAGCCCCT 59.302 50.000 0.00 0.00 0.00 4.79
5840 8655 1.098050 CTAGCAATGTCAACAGCCCC 58.902 55.000 0.00 0.00 0.00 5.80
5841 8656 1.098050 CCTAGCAATGTCAACAGCCC 58.902 55.000 0.00 0.00 0.00 5.19
5842 8657 1.098050 CCCTAGCAATGTCAACAGCC 58.902 55.000 0.00 0.00 0.00 4.85
5843 8658 1.098050 CCCCTAGCAATGTCAACAGC 58.902 55.000 0.00 0.00 0.00 4.40
5844 8659 1.098050 GCCCCTAGCAATGTCAACAG 58.902 55.000 0.00 0.00 42.97 3.16
5845 8660 0.323360 GGCCCCTAGCAATGTCAACA 60.323 55.000 0.00 0.00 46.50 3.33
5846 8661 0.323360 TGGCCCCTAGCAATGTCAAC 60.323 55.000 0.00 0.00 46.50 3.18
5847 8662 0.630673 ATGGCCCCTAGCAATGTCAA 59.369 50.000 0.00 0.00 46.50 3.18
5848 8663 0.630673 AATGGCCCCTAGCAATGTCA 59.369 50.000 0.00 0.00 46.50 3.58
5889 8704 4.430007 TCGTCAACAAGCTCACCATATAC 58.570 43.478 0.00 0.00 0.00 1.47
5917 8732 0.525242 TTGCTGCAGCGTGTTGTTTC 60.525 50.000 32.11 3.94 45.83 2.78
5942 8758 1.252904 GGGAAAAGCTCATGGCAGCA 61.253 55.000 8.91 0.00 42.40 4.41
5990 8806 3.318275 GGTGCTGAGACCATATCGAGTAA 59.682 47.826 0.00 0.00 35.88 2.24
6028 13666 6.828785 AGAGAAGTTGGAGCTAAAAGAAAACA 59.171 34.615 0.00 0.00 0.00 2.83
6030 13668 7.054124 TCAGAGAAGTTGGAGCTAAAAGAAAA 58.946 34.615 0.00 0.00 0.00 2.29
6040 13678 2.499289 TCTGGATCAGAGAAGTTGGAGC 59.501 50.000 0.00 0.00 35.39 4.70
6051 13689 1.957177 GGCGTCATAGTCTGGATCAGA 59.043 52.381 0.00 0.00 38.25 3.27
6053 13691 1.040646 GGGCGTCATAGTCTGGATCA 58.959 55.000 0.00 0.00 0.00 2.92
6059 13697 1.853963 AGTCTTGGGCGTCATAGTCT 58.146 50.000 0.00 0.00 0.00 3.24
6065 13703 0.468226 AACTGAAGTCTTGGGCGTCA 59.532 50.000 0.00 0.00 0.00 4.35
6109 13747 2.909006 AGTTGGATCATGTGAGACTGGT 59.091 45.455 0.00 0.00 0.00 4.00
6118 13756 5.184479 CCATTTCTTGTGAGTTGGATCATGT 59.816 40.000 0.00 0.00 31.58 3.21
6140 13778 3.138098 TCTTGATGCTTATACCATGGCCA 59.862 43.478 13.04 8.56 0.00 5.36
6144 13782 5.297527 TGCTGTTCTTGATGCTTATACCATG 59.702 40.000 0.00 0.00 0.00 3.66
6151 13789 3.018856 CCCATGCTGTTCTTGATGCTTA 58.981 45.455 0.00 0.00 0.00 3.09
6168 13806 0.678048 GCAAGGAAAGCTCGTCCCAT 60.678 55.000 11.84 0.73 35.59 4.00
6170 13808 2.391389 CGCAAGGAAAGCTCGTCCC 61.391 63.158 11.84 0.00 35.59 4.46
6173 13811 2.022129 CGTCGCAAGGAAAGCTCGT 61.022 57.895 0.00 0.00 38.47 4.18
6179 13817 2.033448 ATGGGCGTCGCAAGGAAA 59.967 55.556 20.50 0.00 38.47 3.13
6236 13877 3.140144 TGATTTGGAAGGTGAAGGAGGTT 59.860 43.478 0.00 0.00 0.00 3.50
6274 14492 1.672356 GTCAAGCCATCGCCAGTGT 60.672 57.895 0.00 0.00 34.57 3.55
6315 14533 4.664062 ATTGGGAATGCTCACCGG 57.336 55.556 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.