Multiple sequence alignment - TraesCS3A01G488400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G488400 chr3A 100.000 2576 0 0 1 2576 716257826 716260401 0.000000e+00 4758.0
1 TraesCS3A01G488400 chr3D 88.056 1348 80 31 817 2125 581834524 581833219 0.000000e+00 1522.0
2 TraesCS3A01G488400 chr3D 92.484 785 37 16 817 1586 580713443 580714220 0.000000e+00 1103.0
3 TraesCS3A01G488400 chr3D 88.571 385 28 7 2197 2575 581833033 581832659 1.090000e-123 453.0
4 TraesCS3A01G488400 chr3D 92.896 183 11 2 454 634 581834874 581834692 5.470000e-67 265.0
5 TraesCS3A01G488400 chr3D 91.813 171 12 2 654 823 580713211 580713380 1.190000e-58 237.0
6 TraesCS3A01G488400 chr3D 89.503 181 16 3 225 404 580712891 580713069 2.580000e-55 226.0
7 TraesCS3A01G488400 chr3D 94.326 141 5 3 448 587 580713071 580713209 2.010000e-51 213.0
8 TraesCS3A01G488400 chr3D 92.727 110 7 1 717 826 581834682 581834574 9.540000e-35 158.0
9 TraesCS3A01G488400 chr3B 84.644 1361 110 54 817 2122 776194877 776196193 0.000000e+00 1264.0
10 TraesCS3A01G488400 chr3B 86.304 993 89 31 817 1778 777997923 777996947 0.000000e+00 1037.0
11 TraesCS3A01G488400 chr3B 85.630 341 31 10 2250 2575 776196404 776196741 2.450000e-90 342.0
12 TraesCS3A01G488400 chr3B 83.175 315 27 16 513 823 777998265 777997973 5.470000e-67 265.0
13 TraesCS3A01G488400 chr3B 78.864 440 43 38 1627 2022 779284829 779285262 4.260000e-63 252.0
14 TraesCS3A01G488400 chr3B 85.841 226 12 6 458 676 776194161 776194373 3.340000e-54 222.0
15 TraesCS3A01G488400 chr3B 93.151 146 9 1 1443 1587 779284682 779284827 2.010000e-51 213.0
16 TraesCS3A01G488400 chr3B 100.000 32 0 0 2185 2216 776196372 776196403 2.770000e-05 60.2
17 TraesCS3A01G488400 chr1D 84.928 418 57 4 1141 1555 328798113 328797699 3.960000e-113 418.0
18 TraesCS3A01G488400 chr1B 84.211 418 60 4 1141 1555 442970848 442970434 3.990000e-108 401.0
19 TraesCS3A01G488400 chr1A 84.211 418 60 4 1141 1555 425681651 425681237 3.990000e-108 401.0
20 TraesCS3A01G488400 chr4D 93.846 65 3 1 1478 1541 3791484 3791548 2.110000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G488400 chr3A 716257826 716260401 2575 False 4758.00 4758 100.00000 1 2576 1 chr3A.!!$F1 2575
1 TraesCS3A01G488400 chr3D 581832659 581834874 2215 True 599.50 1522 90.56250 454 2575 4 chr3D.!!$R1 2121
2 TraesCS3A01G488400 chr3D 580712891 580714220 1329 False 444.75 1103 92.03150 225 1586 4 chr3D.!!$F1 1361
3 TraesCS3A01G488400 chr3B 777996947 777998265 1318 True 651.00 1037 84.73950 513 1778 2 chr3B.!!$R1 1265
4 TraesCS3A01G488400 chr3B 776194161 776196741 2580 False 472.05 1264 89.02875 458 2575 4 chr3B.!!$F1 2117
5 TraesCS3A01G488400 chr3B 779284682 779285262 580 False 232.50 252 86.00750 1443 2022 2 chr3B.!!$F2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.110554 TTCGCGCTAAACTTTTCCGC 60.111 50.0 5.56 8.71 37.54 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 2039 0.301687 CGAAATCAATCTGTCCGCGG 59.698 55.0 22.12 22.12 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.861341 ATGCGTGGTTGTAGATGCT 57.139 47.368 0.00 0.00 0.00 3.79
19 20 1.656652 ATGCGTGGTTGTAGATGCTC 58.343 50.000 0.00 0.00 0.00 4.26
20 21 0.608130 TGCGTGGTTGTAGATGCTCT 59.392 50.000 0.00 0.00 0.00 4.09
21 22 1.822371 TGCGTGGTTGTAGATGCTCTA 59.178 47.619 0.00 0.00 0.00 2.43
22 23 2.232696 TGCGTGGTTGTAGATGCTCTAA 59.767 45.455 0.00 0.00 29.58 2.10
23 24 2.603560 GCGTGGTTGTAGATGCTCTAAC 59.396 50.000 0.00 0.00 29.58 2.34
24 25 3.845178 CGTGGTTGTAGATGCTCTAACA 58.155 45.455 0.00 0.00 29.58 2.41
25 26 4.433615 CGTGGTTGTAGATGCTCTAACAT 58.566 43.478 0.00 0.00 29.58 2.71
26 27 5.588240 CGTGGTTGTAGATGCTCTAACATA 58.412 41.667 0.00 0.00 29.58 2.29
27 28 5.459107 CGTGGTTGTAGATGCTCTAACATAC 59.541 44.000 0.00 0.00 29.58 2.39
28 29 5.753921 GTGGTTGTAGATGCTCTAACATACC 59.246 44.000 0.00 0.00 29.58 2.73
29 30 5.423931 TGGTTGTAGATGCTCTAACATACCA 59.576 40.000 0.00 0.00 29.58 3.25
30 31 6.099701 TGGTTGTAGATGCTCTAACATACCAT 59.900 38.462 0.00 0.00 29.58 3.55
31 32 7.289084 TGGTTGTAGATGCTCTAACATACCATA 59.711 37.037 0.00 0.00 29.58 2.74
32 33 8.148351 GGTTGTAGATGCTCTAACATACCATAA 58.852 37.037 0.00 0.00 29.58 1.90
33 34 9.712305 GTTGTAGATGCTCTAACATACCATAAT 57.288 33.333 0.00 0.00 29.58 1.28
46 47 8.500753 AACATACCATAATAAATGTGACGTGT 57.499 30.769 0.00 0.00 33.04 4.49
47 48 7.915508 ACATACCATAATAAATGTGACGTGTG 58.084 34.615 0.00 0.00 31.56 3.82
48 49 5.811399 ACCATAATAAATGTGACGTGTGG 57.189 39.130 0.00 0.00 0.00 4.17
49 50 5.250200 ACCATAATAAATGTGACGTGTGGT 58.750 37.500 0.00 0.00 0.00 4.16
50 51 6.408035 ACCATAATAAATGTGACGTGTGGTA 58.592 36.000 0.00 0.00 34.71 3.25
51 52 6.314400 ACCATAATAAATGTGACGTGTGGTAC 59.686 38.462 0.00 0.00 34.71 3.34
52 53 6.238266 CCATAATAAATGTGACGTGTGGTACC 60.238 42.308 4.43 4.43 0.00 3.34
53 54 2.922740 AAATGTGACGTGTGGTACCT 57.077 45.000 14.36 0.00 0.00 3.08
54 55 5.664294 ATAAATGTGACGTGTGGTACCTA 57.336 39.130 14.36 0.00 0.00 3.08
55 56 3.587797 AATGTGACGTGTGGTACCTAG 57.412 47.619 14.36 4.30 0.00 3.02
56 57 1.250328 TGTGACGTGTGGTACCTAGG 58.750 55.000 14.36 7.41 0.00 3.02
57 58 1.202915 TGTGACGTGTGGTACCTAGGA 60.203 52.381 17.98 0.00 0.00 2.94
58 59 1.888512 GTGACGTGTGGTACCTAGGAA 59.111 52.381 17.98 0.00 0.00 3.36
59 60 2.494870 GTGACGTGTGGTACCTAGGAAT 59.505 50.000 17.98 0.00 0.00 3.01
60 61 2.494471 TGACGTGTGGTACCTAGGAATG 59.506 50.000 17.98 2.40 0.00 2.67
61 62 2.494870 GACGTGTGGTACCTAGGAATGT 59.505 50.000 17.98 5.55 0.00 2.71
62 63 2.494870 ACGTGTGGTACCTAGGAATGTC 59.505 50.000 17.98 3.52 0.00 3.06
63 64 2.159142 CGTGTGGTACCTAGGAATGTCC 60.159 54.545 17.98 10.20 36.58 4.02
64 65 2.104967 TGTGGTACCTAGGAATGTCCG 58.895 52.381 17.98 0.00 42.75 4.79
65 66 2.291735 TGTGGTACCTAGGAATGTCCGA 60.292 50.000 17.98 0.00 42.75 4.55
66 67 2.361438 GTGGTACCTAGGAATGTCCGAG 59.639 54.545 17.98 0.00 42.75 4.63
67 68 1.340568 GGTACCTAGGAATGTCCGAGC 59.659 57.143 17.98 0.00 42.75 5.03
68 69 2.029623 GTACCTAGGAATGTCCGAGCA 58.970 52.381 17.98 0.00 42.75 4.26
69 70 1.568504 ACCTAGGAATGTCCGAGCAA 58.431 50.000 17.98 0.00 42.75 3.91
70 71 1.482593 ACCTAGGAATGTCCGAGCAAG 59.517 52.381 17.98 0.00 42.75 4.01
71 72 1.757118 CCTAGGAATGTCCGAGCAAGA 59.243 52.381 1.05 0.00 42.75 3.02
72 73 2.168521 CCTAGGAATGTCCGAGCAAGAA 59.831 50.000 1.05 0.00 42.75 2.52
73 74 2.393271 AGGAATGTCCGAGCAAGAAG 57.607 50.000 0.00 0.00 42.75 2.85
74 75 0.729690 GGAATGTCCGAGCAAGAAGC 59.270 55.000 0.00 0.00 46.19 3.86
75 76 5.828942 TAGGAATGTCCGAGCAAGAAGCG 62.829 52.174 0.00 0.00 45.40 4.68
86 87 3.268013 GCAAGAAGCGTAACAACATGT 57.732 42.857 0.00 0.00 0.00 3.21
87 88 3.628017 GCAAGAAGCGTAACAACATGTT 58.372 40.909 4.92 4.92 43.88 2.71
88 89 3.664025 GCAAGAAGCGTAACAACATGTTC 59.336 43.478 8.48 0.00 40.22 3.18
89 90 4.788201 GCAAGAAGCGTAACAACATGTTCA 60.788 41.667 8.48 0.00 40.22 3.18
90 91 5.451908 CAAGAAGCGTAACAACATGTTCAT 58.548 37.500 8.48 2.91 40.22 2.57
91 92 5.689383 AGAAGCGTAACAACATGTTCATT 57.311 34.783 8.48 8.86 40.22 2.57
92 93 6.072112 AGAAGCGTAACAACATGTTCATTT 57.928 33.333 8.48 5.07 40.22 2.32
93 94 6.142817 AGAAGCGTAACAACATGTTCATTTC 58.857 36.000 8.48 3.66 40.22 2.17
94 95 5.689383 AGCGTAACAACATGTTCATTTCT 57.311 34.783 8.48 0.00 40.22 2.52
95 96 6.072112 AGCGTAACAACATGTTCATTTCTT 57.928 33.333 8.48 0.00 40.22 2.52
96 97 6.142817 AGCGTAACAACATGTTCATTTCTTC 58.857 36.000 8.48 0.41 40.22 2.87
97 98 5.058008 GCGTAACAACATGTTCATTTCTTCG 59.942 40.000 8.48 9.96 40.22 3.79
98 99 5.058008 CGTAACAACATGTTCATTTCTTCGC 59.942 40.000 8.48 0.00 40.22 4.70
99 100 3.554524 ACAACATGTTCATTTCTTCGCG 58.445 40.909 8.48 0.00 0.00 5.87
100 101 2.247311 ACATGTTCATTTCTTCGCGC 57.753 45.000 0.00 0.00 0.00 6.86
101 102 1.806542 ACATGTTCATTTCTTCGCGCT 59.193 42.857 5.56 0.00 0.00 5.92
102 103 3.000041 ACATGTTCATTTCTTCGCGCTA 59.000 40.909 5.56 0.00 0.00 4.26
103 104 3.435327 ACATGTTCATTTCTTCGCGCTAA 59.565 39.130 5.56 0.00 0.00 3.09
104 105 4.083537 ACATGTTCATTTCTTCGCGCTAAA 60.084 37.500 5.56 1.61 0.00 1.85
105 106 3.805823 TGTTCATTTCTTCGCGCTAAAC 58.194 40.909 5.56 0.00 0.00 2.01
106 107 3.496884 TGTTCATTTCTTCGCGCTAAACT 59.503 39.130 5.56 0.00 0.00 2.66
107 108 4.024387 TGTTCATTTCTTCGCGCTAAACTT 60.024 37.500 5.56 0.00 0.00 2.66
108 109 4.742438 TCATTTCTTCGCGCTAAACTTT 57.258 36.364 5.56 0.00 0.00 2.66
109 110 5.103290 TCATTTCTTCGCGCTAAACTTTT 57.897 34.783 5.56 0.00 0.00 2.27
110 111 5.144359 TCATTTCTTCGCGCTAAACTTTTC 58.856 37.500 5.56 0.00 0.00 2.29
111 112 3.531262 TTCTTCGCGCTAAACTTTTCC 57.469 42.857 5.56 0.00 0.00 3.13
112 113 1.458064 TCTTCGCGCTAAACTTTTCCG 59.542 47.619 5.56 0.00 0.00 4.30
113 114 0.110554 TTCGCGCTAAACTTTTCCGC 60.111 50.000 5.56 8.71 37.54 5.54
114 115 1.205568 CGCGCTAAACTTTTCCGCA 59.794 52.632 5.56 0.00 39.44 5.69
115 116 0.384974 CGCGCTAAACTTTTCCGCAA 60.385 50.000 5.56 0.00 39.44 4.85
116 117 1.761206 GCGCTAAACTTTTCCGCAAA 58.239 45.000 0.00 0.00 39.35 3.68
117 118 2.324860 GCGCTAAACTTTTCCGCAAAT 58.675 42.857 0.00 0.00 39.35 2.32
118 119 2.090503 GCGCTAAACTTTTCCGCAAATG 59.909 45.455 0.00 0.00 39.35 2.32
119 120 3.305110 CGCTAAACTTTTCCGCAAATGT 58.695 40.909 0.00 0.00 32.59 2.71
120 121 3.119463 CGCTAAACTTTTCCGCAAATGTG 59.881 43.478 0.00 0.00 31.85 3.21
121 122 4.048504 GCTAAACTTTTCCGCAAATGTGT 58.951 39.130 0.00 0.00 31.85 3.72
122 123 4.148174 GCTAAACTTTTCCGCAAATGTGTC 59.852 41.667 0.00 0.00 31.85 3.67
123 124 3.791973 AACTTTTCCGCAAATGTGTCA 57.208 38.095 0.00 0.00 31.85 3.58
124 125 3.354089 ACTTTTCCGCAAATGTGTCAG 57.646 42.857 0.00 0.00 30.62 3.51
125 126 2.948979 ACTTTTCCGCAAATGTGTCAGA 59.051 40.909 0.00 0.00 30.62 3.27
126 127 3.569701 ACTTTTCCGCAAATGTGTCAGAT 59.430 39.130 0.00 0.00 30.62 2.90
127 128 4.037923 ACTTTTCCGCAAATGTGTCAGATT 59.962 37.500 0.00 0.00 30.62 2.40
128 129 3.829886 TTCCGCAAATGTGTCAGATTC 57.170 42.857 0.00 0.00 0.00 2.52
129 130 3.057969 TCCGCAAATGTGTCAGATTCT 57.942 42.857 0.00 0.00 0.00 2.40
130 131 3.411446 TCCGCAAATGTGTCAGATTCTT 58.589 40.909 0.00 0.00 0.00 2.52
131 132 3.436704 TCCGCAAATGTGTCAGATTCTTC 59.563 43.478 0.00 0.00 0.00 2.87
132 133 3.438087 CCGCAAATGTGTCAGATTCTTCT 59.562 43.478 0.00 0.00 0.00 2.85
133 134 4.436584 CCGCAAATGTGTCAGATTCTTCTC 60.437 45.833 0.00 0.00 0.00 2.87
134 135 4.391216 CGCAAATGTGTCAGATTCTTCTCT 59.609 41.667 0.00 0.00 0.00 3.10
135 136 5.445673 CGCAAATGTGTCAGATTCTTCTCTC 60.446 44.000 0.00 0.00 0.00 3.20
136 137 5.410746 GCAAATGTGTCAGATTCTTCTCTCA 59.589 40.000 0.00 0.00 0.00 3.27
137 138 6.072838 GCAAATGTGTCAGATTCTTCTCTCAA 60.073 38.462 0.00 0.00 0.00 3.02
138 139 7.519843 CAAATGTGTCAGATTCTTCTCTCAAG 58.480 38.462 0.00 0.00 0.00 3.02
139 140 5.798125 TGTGTCAGATTCTTCTCTCAAGT 57.202 39.130 0.00 0.00 0.00 3.16
140 141 6.901081 TGTGTCAGATTCTTCTCTCAAGTA 57.099 37.500 0.00 0.00 0.00 2.24
141 142 7.290110 TGTGTCAGATTCTTCTCTCAAGTAA 57.710 36.000 0.00 0.00 0.00 2.24
142 143 7.148641 TGTGTCAGATTCTTCTCTCAAGTAAC 58.851 38.462 0.00 0.00 0.00 2.50
143 144 6.588373 GTGTCAGATTCTTCTCTCAAGTAACC 59.412 42.308 0.00 0.00 0.00 2.85
144 145 6.267699 TGTCAGATTCTTCTCTCAAGTAACCA 59.732 38.462 0.00 0.00 0.00 3.67
145 146 7.155328 GTCAGATTCTTCTCTCAAGTAACCAA 58.845 38.462 0.00 0.00 0.00 3.67
146 147 7.117092 GTCAGATTCTTCTCTCAAGTAACCAAC 59.883 40.741 0.00 0.00 0.00 3.77
147 148 6.931281 CAGATTCTTCTCTCAAGTAACCAACA 59.069 38.462 0.00 0.00 0.00 3.33
148 149 6.931840 AGATTCTTCTCTCAAGTAACCAACAC 59.068 38.462 0.00 0.00 0.00 3.32
149 150 4.617959 TCTTCTCTCAAGTAACCAACACG 58.382 43.478 0.00 0.00 0.00 4.49
150 151 4.340097 TCTTCTCTCAAGTAACCAACACGA 59.660 41.667 0.00 0.00 0.00 4.35
151 152 4.238761 TCTCTCAAGTAACCAACACGAG 57.761 45.455 0.00 0.00 32.58 4.18
152 153 3.887110 TCTCTCAAGTAACCAACACGAGA 59.113 43.478 0.00 0.00 36.09 4.04
153 154 4.523173 TCTCTCAAGTAACCAACACGAGAT 59.477 41.667 0.00 0.00 37.17 2.75
154 155 5.708697 TCTCTCAAGTAACCAACACGAGATA 59.291 40.000 0.00 0.00 37.17 1.98
155 156 6.377429 TCTCTCAAGTAACCAACACGAGATAT 59.623 38.462 0.00 0.00 37.17 1.63
156 157 6.330278 TCTCAAGTAACCAACACGAGATATG 58.670 40.000 0.00 0.00 34.50 1.78
157 158 6.032956 TCAAGTAACCAACACGAGATATGT 57.967 37.500 0.00 0.00 0.00 2.29
158 159 5.867174 TCAAGTAACCAACACGAGATATGTG 59.133 40.000 0.00 0.00 42.99 3.21
170 171 7.755582 CACGAGATATGTGTGTTCATTAAGA 57.244 36.000 0.00 0.00 32.68 2.10
171 172 8.185003 CACGAGATATGTGTGTTCATTAAGAA 57.815 34.615 0.00 0.00 32.68 2.52
172 173 8.323854 CACGAGATATGTGTGTTCATTAAGAAG 58.676 37.037 0.00 0.00 33.04 2.85
173 174 8.251026 ACGAGATATGTGTGTTCATTAAGAAGA 58.749 33.333 0.00 0.00 36.78 2.87
174 175 9.087424 CGAGATATGTGTGTTCATTAAGAAGAA 57.913 33.333 0.00 0.00 36.78 2.52
193 194 8.884124 AGAAGAAAATTGTATGGATTTGAGGA 57.116 30.769 0.00 0.00 0.00 3.71
194 195 9.484806 AGAAGAAAATTGTATGGATTTGAGGAT 57.515 29.630 0.00 0.00 0.00 3.24
197 198 9.258629 AGAAAATTGTATGGATTTGAGGATTCA 57.741 29.630 0.00 0.00 0.00 2.57
204 205 9.865152 TGTATGGATTTGAGGATTCATAATTGA 57.135 29.630 0.00 0.00 31.06 2.57
206 207 7.828508 TGGATTTGAGGATTCATAATTGAGG 57.171 36.000 0.00 0.00 32.27 3.86
207 208 7.356680 TGGATTTGAGGATTCATAATTGAGGT 58.643 34.615 0.00 0.00 32.27 3.85
208 209 8.501904 TGGATTTGAGGATTCATAATTGAGGTA 58.498 33.333 0.00 0.00 32.27 3.08
209 210 9.525826 GGATTTGAGGATTCATAATTGAGGTAT 57.474 33.333 0.00 0.00 32.27 2.73
211 212 8.924511 TTTGAGGATTCATAATTGAGGTATCC 57.075 34.615 0.00 0.00 37.17 2.59
212 213 6.701340 TGAGGATTCATAATTGAGGTATCCG 58.299 40.000 0.00 0.00 39.92 4.18
213 214 6.054860 AGGATTCATAATTGAGGTATCCGG 57.945 41.667 0.00 0.00 39.92 5.14
214 215 5.045578 AGGATTCATAATTGAGGTATCCGGG 60.046 44.000 0.00 0.00 39.92 5.73
215 216 5.280521 GGATTCATAATTGAGGTATCCGGGT 60.281 44.000 0.00 0.00 30.77 5.28
216 217 5.640158 TTCATAATTGAGGTATCCGGGTT 57.360 39.130 0.00 0.00 32.27 4.11
217 218 4.968259 TCATAATTGAGGTATCCGGGTTG 58.032 43.478 0.00 0.00 0.00 3.77
218 219 4.410883 TCATAATTGAGGTATCCGGGTTGT 59.589 41.667 0.00 0.00 0.00 3.32
219 220 2.710096 ATTGAGGTATCCGGGTTGTG 57.290 50.000 0.00 0.00 0.00 3.33
220 221 0.616371 TTGAGGTATCCGGGTTGTGG 59.384 55.000 0.00 0.00 0.00 4.17
221 222 0.252330 TGAGGTATCCGGGTTGTGGA 60.252 55.000 0.00 0.00 40.46 4.02
222 223 0.906775 GAGGTATCCGGGTTGTGGAA 59.093 55.000 0.00 0.00 39.39 3.53
223 224 1.279846 GAGGTATCCGGGTTGTGGAAA 59.720 52.381 0.00 0.00 39.39 3.13
229 230 1.096386 CCGGGTTGTGGAAACGAACA 61.096 55.000 0.00 0.00 0.00 3.18
241 242 2.060050 AACGAACATTTGTGGGGTCA 57.940 45.000 0.00 0.00 0.00 4.02
248 249 3.843422 ACATTTGTGGGGTCAGATTTGA 58.157 40.909 0.00 0.00 0.00 2.69
264 265 3.838795 GACGTACGCGGCTGCAAG 61.839 66.667 19.50 4.39 44.12 4.01
266 267 3.838795 CGTACGCGGCTGCAAGTC 61.839 66.667 19.50 3.69 42.97 3.01
267 268 2.736995 GTACGCGGCTGCAAGTCA 60.737 61.111 19.50 0.00 39.79 3.41
279 280 4.437930 GGCTGCAAGTCATCTAACATGTTC 60.438 45.833 15.85 0.00 39.41 3.18
280 281 4.394300 GCTGCAAGTCATCTAACATGTTCT 59.606 41.667 15.85 1.52 35.30 3.01
281 282 5.106396 GCTGCAAGTCATCTAACATGTTCTT 60.106 40.000 15.85 8.20 35.30 2.52
356 357 6.021596 GCACTTGTGTTGACTAATTTATCCG 58.978 40.000 2.61 0.00 0.00 4.18
359 360 7.117812 CACTTGTGTTGACTAATTTATCCGTCT 59.882 37.037 0.00 0.00 0.00 4.18
412 413 6.442513 GCAAACTATTGGCTATGTCTTTCT 57.557 37.500 0.00 0.00 37.02 2.52
413 414 6.490534 GCAAACTATTGGCTATGTCTTTCTC 58.509 40.000 0.00 0.00 37.02 2.87
414 415 6.094048 GCAAACTATTGGCTATGTCTTTCTCA 59.906 38.462 0.00 0.00 37.02 3.27
415 416 7.362056 GCAAACTATTGGCTATGTCTTTCTCAA 60.362 37.037 0.00 0.00 37.02 3.02
416 417 8.514594 CAAACTATTGGCTATGTCTTTCTCAAA 58.485 33.333 0.00 0.00 32.69 2.69
417 418 8.635765 AACTATTGGCTATGTCTTTCTCAAAA 57.364 30.769 0.00 0.00 0.00 2.44
418 419 8.635765 ACTATTGGCTATGTCTTTCTCAAAAA 57.364 30.769 0.00 0.00 0.00 1.94
452 453 3.562639 GCTATGTGCCGATGTACGA 57.437 52.632 0.00 0.00 45.77 3.43
548 554 0.389948 ACATTCGCCGGAGTCAGTTC 60.390 55.000 5.05 0.00 0.00 3.01
553 559 1.202604 TCGCCGGAGTCAGTTCTTTTT 60.203 47.619 5.05 0.00 0.00 1.94
642 656 1.207488 TACCTTGGCCCTGTGCATCT 61.207 55.000 0.00 0.00 43.89 2.90
644 658 0.749454 CCTTGGCCCTGTGCATCTAC 60.749 60.000 0.00 0.00 43.89 2.59
788 1109 2.055042 CCTCCCCTCTCACTGTCCG 61.055 68.421 0.00 0.00 0.00 4.79
793 1114 2.202362 CTCTCACTGTCCGCGACG 60.202 66.667 8.23 3.59 34.95 5.12
866 1266 2.063378 GGTGGCTCCTCCTCCTCTG 61.063 68.421 0.00 0.00 43.58 3.35
868 1268 1.305633 TGGCTCCTCCTCCTCTGTG 60.306 63.158 0.00 0.00 35.26 3.66
898 1298 1.592223 CACGTCTCCCTCTGGAACC 59.408 63.158 0.00 0.00 41.17 3.62
946 1348 2.125664 GATCGAATCGAGCGAACCG 58.874 57.895 12.00 3.99 41.52 4.44
1011 1431 2.514592 ACGGCGATGGGCAAGATG 60.515 61.111 16.62 0.00 46.16 2.90
1106 1526 1.381599 AGGAGCAGCAGGAGGAGAG 60.382 63.158 0.00 0.00 0.00 3.20
1161 1587 2.503382 GGAGGAGATGGAGCGGGTC 61.503 68.421 0.00 0.00 0.00 4.46
1273 1699 1.153289 GAGCTGACCCGCATGATGT 60.153 57.895 0.00 0.00 0.00 3.06
1274 1700 0.745845 GAGCTGACCCGCATGATGTT 60.746 55.000 0.00 0.00 0.00 2.71
1583 2009 0.692419 AAGATGGCCTGATCCGTCCT 60.692 55.000 3.32 0.00 41.92 3.85
1595 2021 0.614979 TCCGTCCTCCCTCTTCTTGG 60.615 60.000 0.00 0.00 0.00 3.61
1596 2022 0.614979 CCGTCCTCCCTCTTCTTGGA 60.615 60.000 0.00 0.00 0.00 3.53
1598 2024 1.834263 CGTCCTCCCTCTTCTTGGATT 59.166 52.381 0.00 0.00 0.00 3.01
1599 2025 2.159028 CGTCCTCCCTCTTCTTGGATTC 60.159 54.545 0.00 0.00 0.00 2.52
1600 2026 2.840651 GTCCTCCCTCTTCTTGGATTCA 59.159 50.000 0.00 0.00 0.00 2.57
1601 2027 3.264450 GTCCTCCCTCTTCTTGGATTCAA 59.736 47.826 0.00 0.00 0.00 2.69
1602 2028 4.080072 GTCCTCCCTCTTCTTGGATTCAAT 60.080 45.833 0.00 0.00 31.75 2.57
1603 2029 4.164988 TCCTCCCTCTTCTTGGATTCAATC 59.835 45.833 0.00 0.00 31.75 2.67
1614 2040 1.664151 GGATTCAATCCGTTGTCGTCC 59.336 52.381 0.00 0.00 40.13 4.79
1615 2041 1.323534 GATTCAATCCGTTGTCGTCCG 59.676 52.381 0.00 0.00 36.69 4.79
1616 2042 1.286354 TTCAATCCGTTGTCGTCCGC 61.286 55.000 0.00 0.00 36.69 5.54
1617 2043 2.807895 AATCCGTTGTCGTCCGCG 60.808 61.111 0.00 0.00 39.92 6.46
1618 2044 4.789075 ATCCGTTGTCGTCCGCGG 62.789 66.667 22.12 22.12 44.95 6.46
1621 2047 4.986587 CGTTGTCGTCCGCGGACA 62.987 66.667 46.26 33.80 44.77 4.02
1622 2048 3.103911 GTTGTCGTCCGCGGACAG 61.104 66.667 46.26 38.13 44.77 3.51
1623 2049 3.289062 TTGTCGTCCGCGGACAGA 61.289 61.111 46.26 39.37 44.77 3.41
1624 2050 2.632544 TTGTCGTCCGCGGACAGAT 61.633 57.895 46.26 0.00 44.77 2.90
1625 2051 2.149803 TTGTCGTCCGCGGACAGATT 62.150 55.000 46.26 0.00 44.77 2.40
1681 2126 0.447801 GTGCGGTGCAGATTAAGTGG 59.552 55.000 0.00 0.00 40.08 4.00
1718 2163 2.137810 TTCAAGGATTAAAGGGCGGG 57.862 50.000 0.00 0.00 0.00 6.13
1781 2242 0.034337 TTCTTGGTGGTGCCGAGTAC 59.966 55.000 0.94 0.00 46.78 2.73
1790 2251 2.159254 TGGTGCCGAGTACGTAATAACC 60.159 50.000 0.00 3.43 37.88 2.85
1841 2302 9.114952 TCGCGATTATCTAAAGATCTGAGATAT 57.885 33.333 20.49 13.92 33.35 1.63
1870 2360 1.092348 GGTGAGGTTGCCGGTTAATC 58.908 55.000 1.90 0.00 0.00 1.75
1872 2362 0.609151 TGAGGTTGCCGGTTAATCGA 59.391 50.000 10.34 0.00 0.00 3.59
1873 2363 1.004595 GAGGTTGCCGGTTAATCGAC 58.995 55.000 10.34 0.00 0.00 4.20
1874 2364 0.611714 AGGTTGCCGGTTAATCGACT 59.388 50.000 10.34 0.00 0.00 4.18
1875 2365 1.004595 GGTTGCCGGTTAATCGACTC 58.995 55.000 10.34 0.00 0.00 3.36
1876 2366 1.405121 GGTTGCCGGTTAATCGACTCT 60.405 52.381 10.34 0.00 0.00 3.24
1884 2374 3.374058 CGGTTAATCGACTCTTTTGCCAT 59.626 43.478 0.61 0.00 0.00 4.40
1909 2399 3.742882 TGTTCTTGTCATCTCTGCTTTCG 59.257 43.478 0.00 0.00 0.00 3.46
1918 2408 2.218603 TCTCTGCTTTCGGTTTCAACC 58.781 47.619 0.00 0.00 45.76 3.77
2004 2516 3.499918 GTCTGGATCTGTGTTTCTGTTGG 59.500 47.826 0.00 0.00 0.00 3.77
2014 2526 3.253432 GTGTTTCTGTTGGGAATCTGGAC 59.747 47.826 0.00 0.00 0.00 4.02
2043 2555 1.398390 GCTCATAACCTGGAAACTGCG 59.602 52.381 0.00 0.00 0.00 5.18
2051 2563 2.822255 GGAAACTGCGGCGCCATA 60.822 61.111 30.82 13.70 0.00 2.74
2053 2565 0.882927 GGAAACTGCGGCGCCATATA 60.883 55.000 30.82 9.33 0.00 0.86
2073 2585 2.162338 ATTCTTCGCCCGTCGGTTCA 62.162 55.000 11.06 0.00 39.05 3.18
2092 2604 1.532868 CAGCTCGTCTTCTTGTTTGGG 59.467 52.381 0.00 0.00 0.00 4.12
2096 2608 3.181490 GCTCGTCTTCTTGTTTGGGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
2130 2646 0.763223 AGGGTCTTCGTCTTGTGGGT 60.763 55.000 0.00 0.00 0.00 4.51
2133 2649 1.202604 GGTCTTCGTCTTGTGGGTTCA 60.203 52.381 0.00 0.00 0.00 3.18
2136 2652 2.135933 CTTCGTCTTGTGGGTTCAGAC 58.864 52.381 0.00 0.00 0.00 3.51
2139 2655 2.295349 TCGTCTTGTGGGTTCAGACTAC 59.705 50.000 0.00 0.00 0.00 2.73
2140 2656 2.296471 CGTCTTGTGGGTTCAGACTACT 59.704 50.000 0.00 0.00 0.00 2.57
2141 2657 3.612004 CGTCTTGTGGGTTCAGACTACTC 60.612 52.174 0.00 0.00 0.00 2.59
2171 2723 8.909708 TTTTGCTGTTGAAATATATGTACTGC 57.090 30.769 0.00 0.00 0.00 4.40
2173 2725 5.815222 TGCTGTTGAAATATATGTACTGCGT 59.185 36.000 0.00 0.00 34.50 5.24
2175 2727 6.043327 TGTTGAAATATATGTACTGCGTGC 57.957 37.500 0.00 0.00 0.00 5.34
2176 2728 4.965042 TGAAATATATGTACTGCGTGCG 57.035 40.909 0.00 0.00 0.00 5.34
2178 2730 2.724977 ATATATGTACTGCGTGCGCT 57.275 45.000 17.49 0.87 42.51 5.92
2179 2731 3.842732 ATATATGTACTGCGTGCGCTA 57.157 42.857 17.49 0.00 42.51 4.26
2180 2732 1.767289 ATATGTACTGCGTGCGCTAC 58.233 50.000 17.49 12.43 42.51 3.58
2181 2733 0.452585 TATGTACTGCGTGCGCTACA 59.547 50.000 17.49 17.09 42.51 2.74
2226 2862 2.455674 TGCACTCGCATAGACTTTGT 57.544 45.000 0.00 0.00 45.36 2.83
2227 2863 2.766313 TGCACTCGCATAGACTTTGTT 58.234 42.857 0.00 0.00 45.36 2.83
2228 2864 2.736721 TGCACTCGCATAGACTTTGTTC 59.263 45.455 0.00 0.00 45.36 3.18
2247 2883 4.202377 TGTTCGAGGGTGGAAATTTCTACA 60.202 41.667 28.92 13.52 40.05 2.74
2253 2889 2.161609 GGTGGAAATTTCTACAGTGCCG 59.838 50.000 28.92 0.00 40.05 5.69
2287 2923 2.418368 TCCGATTTGGAATCCCTGTG 57.582 50.000 0.00 0.00 46.38 3.66
2308 2944 1.841663 CTCGTGCTTCCAAACGGGTG 61.842 60.000 0.00 0.00 40.18 4.61
2406 3044 3.430929 CCTGAACCCTCCGAATAGTCTTG 60.431 52.174 0.00 0.00 0.00 3.02
2409 3047 2.108970 ACCCTCCGAATAGTCTTGTCC 58.891 52.381 0.00 0.00 0.00 4.02
2410 3048 2.292323 ACCCTCCGAATAGTCTTGTCCT 60.292 50.000 0.00 0.00 0.00 3.85
2411 3049 3.053095 ACCCTCCGAATAGTCTTGTCCTA 60.053 47.826 0.00 0.00 0.00 2.94
2412 3050 3.958798 CCCTCCGAATAGTCTTGTCCTAA 59.041 47.826 0.00 0.00 0.00 2.69
2413 3051 4.202131 CCCTCCGAATAGTCTTGTCCTAAC 60.202 50.000 0.00 0.00 0.00 2.34
2414 3052 4.202131 CCTCCGAATAGTCTTGTCCTAACC 60.202 50.000 0.00 0.00 0.00 2.85
2492 3142 9.151471 TGAGATTATTTTGTCAGTAGTGTTAGC 57.849 33.333 0.00 0.00 0.00 3.09
2511 3161 1.134907 GCATCAAGCTTGGAACATGGG 60.135 52.381 25.73 8.10 39.30 4.00
2575 3225 1.379576 AAAGGGGCAGCTGCTGATC 60.380 57.895 35.82 20.30 41.70 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.656652 GAGCATCTACAACCACGCAT 58.343 50.000 0.00 0.00 0.00 4.73
1 2 3.137484 GAGCATCTACAACCACGCA 57.863 52.632 0.00 0.00 0.00 5.24
20 21 9.602568 ACACGTCACATTTATTATGGTATGTTA 57.397 29.630 0.00 0.00 0.00 2.41
21 22 8.394877 CACACGTCACATTTATTATGGTATGTT 58.605 33.333 0.00 0.00 0.00 2.71
22 23 7.011950 CCACACGTCACATTTATTATGGTATGT 59.988 37.037 0.00 0.00 0.00 2.29
23 24 7.011950 ACCACACGTCACATTTATTATGGTATG 59.988 37.037 0.00 0.00 35.01 2.39
24 25 7.051623 ACCACACGTCACATTTATTATGGTAT 58.948 34.615 0.00 0.00 35.01 2.73
25 26 6.408035 ACCACACGTCACATTTATTATGGTA 58.592 36.000 0.00 0.00 35.01 3.25
26 27 5.250200 ACCACACGTCACATTTATTATGGT 58.750 37.500 0.00 0.00 31.91 3.55
27 28 5.811399 ACCACACGTCACATTTATTATGG 57.189 39.130 0.00 0.00 0.00 2.74
28 29 6.537301 AGGTACCACACGTCACATTTATTATG 59.463 38.462 15.94 0.00 0.00 1.90
29 30 6.646267 AGGTACCACACGTCACATTTATTAT 58.354 36.000 15.94 0.00 0.00 1.28
30 31 6.040209 AGGTACCACACGTCACATTTATTA 57.960 37.500 15.94 0.00 0.00 0.98
31 32 4.901868 AGGTACCACACGTCACATTTATT 58.098 39.130 15.94 0.00 0.00 1.40
32 33 4.546829 AGGTACCACACGTCACATTTAT 57.453 40.909 15.94 0.00 0.00 1.40
33 34 4.082081 CCTAGGTACCACACGTCACATTTA 60.082 45.833 15.94 0.00 0.00 1.40
34 35 2.922740 AGGTACCACACGTCACATTT 57.077 45.000 15.94 0.00 0.00 2.32
35 36 2.232941 CCTAGGTACCACACGTCACATT 59.767 50.000 15.94 0.00 0.00 2.71
36 37 1.822990 CCTAGGTACCACACGTCACAT 59.177 52.381 15.94 0.00 0.00 3.21
37 38 1.202915 TCCTAGGTACCACACGTCACA 60.203 52.381 15.94 0.00 0.00 3.58
38 39 1.538047 TCCTAGGTACCACACGTCAC 58.462 55.000 15.94 0.00 0.00 3.67
39 40 2.291209 TTCCTAGGTACCACACGTCA 57.709 50.000 15.94 0.00 0.00 4.35
40 41 2.494870 ACATTCCTAGGTACCACACGTC 59.505 50.000 15.94 0.00 0.00 4.34
41 42 2.494870 GACATTCCTAGGTACCACACGT 59.505 50.000 15.94 1.24 0.00 4.49
42 43 2.159142 GGACATTCCTAGGTACCACACG 60.159 54.545 15.94 0.00 32.53 4.49
43 44 2.159142 CGGACATTCCTAGGTACCACAC 60.159 54.545 15.94 0.00 33.30 3.82
44 45 2.104967 CGGACATTCCTAGGTACCACA 58.895 52.381 15.94 0.00 33.30 4.17
45 46 2.361438 CTCGGACATTCCTAGGTACCAC 59.639 54.545 15.94 0.00 33.30 4.16
46 47 2.662866 CTCGGACATTCCTAGGTACCA 58.337 52.381 15.94 0.00 33.30 3.25
47 48 1.340568 GCTCGGACATTCCTAGGTACC 59.659 57.143 9.08 2.73 33.30 3.34
48 49 2.029623 TGCTCGGACATTCCTAGGTAC 58.970 52.381 9.08 0.00 33.30 3.34
49 50 2.447408 TGCTCGGACATTCCTAGGTA 57.553 50.000 9.08 0.00 33.30 3.08
50 51 1.482593 CTTGCTCGGACATTCCTAGGT 59.517 52.381 9.08 0.00 33.30 3.08
51 52 1.757118 TCTTGCTCGGACATTCCTAGG 59.243 52.381 0.82 0.82 33.30 3.02
52 53 3.452474 CTTCTTGCTCGGACATTCCTAG 58.548 50.000 0.00 0.00 33.30 3.02
53 54 2.418746 GCTTCTTGCTCGGACATTCCTA 60.419 50.000 0.00 0.00 38.95 2.94
54 55 1.677217 GCTTCTTGCTCGGACATTCCT 60.677 52.381 0.00 0.00 38.95 3.36
55 56 0.729690 GCTTCTTGCTCGGACATTCC 59.270 55.000 0.00 0.00 38.95 3.01
56 57 0.371645 CGCTTCTTGCTCGGACATTC 59.628 55.000 0.00 0.00 40.11 2.67
57 58 0.320771 ACGCTTCTTGCTCGGACATT 60.321 50.000 0.00 0.00 40.11 2.71
58 59 0.530744 TACGCTTCTTGCTCGGACAT 59.469 50.000 0.00 0.00 40.11 3.06
59 60 0.315886 TTACGCTTCTTGCTCGGACA 59.684 50.000 0.00 0.00 40.11 4.02
60 61 0.714439 GTTACGCTTCTTGCTCGGAC 59.286 55.000 0.00 0.00 40.11 4.79
61 62 0.315886 TGTTACGCTTCTTGCTCGGA 59.684 50.000 0.00 0.00 40.11 4.55
62 63 1.136336 GTTGTTACGCTTCTTGCTCGG 60.136 52.381 0.00 0.00 40.11 4.63
63 64 1.525197 TGTTGTTACGCTTCTTGCTCG 59.475 47.619 0.00 0.00 40.11 5.03
64 65 3.058914 ACATGTTGTTACGCTTCTTGCTC 60.059 43.478 0.00 0.00 40.11 4.26
65 66 2.878406 ACATGTTGTTACGCTTCTTGCT 59.122 40.909 0.00 0.00 40.11 3.91
66 67 3.268013 ACATGTTGTTACGCTTCTTGC 57.732 42.857 0.00 0.00 38.57 4.01
67 68 4.843147 TGAACATGTTGTTACGCTTCTTG 58.157 39.130 17.58 0.00 41.28 3.02
68 69 5.689383 ATGAACATGTTGTTACGCTTCTT 57.311 34.783 17.58 0.00 41.28 2.52
69 70 5.689383 AATGAACATGTTGTTACGCTTCT 57.311 34.783 17.58 0.00 41.28 2.85
70 71 6.142817 AGAAATGAACATGTTGTTACGCTTC 58.857 36.000 17.58 8.54 41.28 3.86
71 72 6.072112 AGAAATGAACATGTTGTTACGCTT 57.928 33.333 17.58 0.00 41.28 4.68
72 73 5.689383 AGAAATGAACATGTTGTTACGCT 57.311 34.783 17.58 3.36 41.28 5.07
73 74 5.058008 CGAAGAAATGAACATGTTGTTACGC 59.942 40.000 17.58 0.32 41.28 4.42
74 75 5.058008 GCGAAGAAATGAACATGTTGTTACG 59.942 40.000 17.58 13.80 41.28 3.18
75 76 5.058008 CGCGAAGAAATGAACATGTTGTTAC 59.942 40.000 17.58 1.54 41.28 2.50
76 77 5.143660 CGCGAAGAAATGAACATGTTGTTA 58.856 37.500 17.58 2.38 41.28 2.41
77 78 3.974401 CGCGAAGAAATGAACATGTTGTT 59.026 39.130 17.58 7.88 44.37 2.83
78 79 3.554524 CGCGAAGAAATGAACATGTTGT 58.445 40.909 17.58 1.09 0.00 3.32
79 80 2.339400 GCGCGAAGAAATGAACATGTTG 59.661 45.455 17.58 0.00 0.00 3.33
80 81 2.226437 AGCGCGAAGAAATGAACATGTT 59.774 40.909 12.10 11.78 0.00 2.71
81 82 1.806542 AGCGCGAAGAAATGAACATGT 59.193 42.857 12.10 0.00 0.00 3.21
82 83 2.532531 AGCGCGAAGAAATGAACATG 57.467 45.000 12.10 0.00 0.00 3.21
83 84 4.154195 AGTTTAGCGCGAAGAAATGAACAT 59.846 37.500 12.10 0.00 0.00 2.71
84 85 3.496884 AGTTTAGCGCGAAGAAATGAACA 59.503 39.130 12.10 0.00 0.00 3.18
85 86 4.066710 AGTTTAGCGCGAAGAAATGAAC 57.933 40.909 12.10 2.41 0.00 3.18
86 87 4.742438 AAGTTTAGCGCGAAGAAATGAA 57.258 36.364 12.10 0.00 0.00 2.57
87 88 4.742438 AAAGTTTAGCGCGAAGAAATGA 57.258 36.364 12.10 0.00 0.00 2.57
88 89 4.320953 GGAAAAGTTTAGCGCGAAGAAATG 59.679 41.667 12.10 0.00 0.00 2.32
89 90 4.473199 GGAAAAGTTTAGCGCGAAGAAAT 58.527 39.130 12.10 0.00 0.00 2.17
90 91 3.605231 CGGAAAAGTTTAGCGCGAAGAAA 60.605 43.478 12.10 2.94 0.00 2.52
91 92 2.096614 CGGAAAAGTTTAGCGCGAAGAA 60.097 45.455 12.10 0.00 0.00 2.52
92 93 1.458064 CGGAAAAGTTTAGCGCGAAGA 59.542 47.619 12.10 0.00 0.00 2.87
93 94 1.865725 CGGAAAAGTTTAGCGCGAAG 58.134 50.000 12.10 0.00 0.00 3.79
94 95 0.110554 GCGGAAAAGTTTAGCGCGAA 60.111 50.000 12.10 0.00 0.00 4.70
95 96 1.222766 TGCGGAAAAGTTTAGCGCGA 61.223 50.000 12.10 0.00 0.00 5.87
96 97 0.384974 TTGCGGAAAAGTTTAGCGCG 60.385 50.000 0.00 0.00 0.00 6.86
97 98 1.761206 TTTGCGGAAAAGTTTAGCGC 58.239 45.000 0.00 0.00 0.00 5.92
98 99 3.119463 CACATTTGCGGAAAAGTTTAGCG 59.881 43.478 7.57 0.00 0.00 4.26
99 100 4.048504 ACACATTTGCGGAAAAGTTTAGC 58.951 39.130 7.57 0.00 0.00 3.09
100 101 5.277825 TGACACATTTGCGGAAAAGTTTAG 58.722 37.500 7.57 0.28 0.00 1.85
101 102 5.066634 TCTGACACATTTGCGGAAAAGTTTA 59.933 36.000 7.57 0.00 0.00 2.01
102 103 4.111916 CTGACACATTTGCGGAAAAGTTT 58.888 39.130 7.57 1.67 0.00 2.66
103 104 3.380004 TCTGACACATTTGCGGAAAAGTT 59.620 39.130 7.57 0.57 0.00 2.66
104 105 2.948979 TCTGACACATTTGCGGAAAAGT 59.051 40.909 6.08 5.14 0.00 2.66
105 106 3.624326 TCTGACACATTTGCGGAAAAG 57.376 42.857 6.08 4.38 0.00 2.27
106 107 4.278170 AGAATCTGACACATTTGCGGAAAA 59.722 37.500 6.08 0.00 0.00 2.29
107 108 3.820467 AGAATCTGACACATTTGCGGAAA 59.180 39.130 4.04 4.04 0.00 3.13
108 109 3.411446 AGAATCTGACACATTTGCGGAA 58.589 40.909 0.00 0.00 0.00 4.30
109 110 3.057969 AGAATCTGACACATTTGCGGA 57.942 42.857 0.00 0.00 0.00 5.54
110 111 3.438087 AGAAGAATCTGACACATTTGCGG 59.562 43.478 0.00 0.00 33.59 5.69
111 112 4.391216 AGAGAAGAATCTGACACATTTGCG 59.609 41.667 0.00 0.00 35.54 4.85
112 113 5.410746 TGAGAGAAGAATCTGACACATTTGC 59.589 40.000 0.00 0.00 35.54 3.68
113 114 7.172875 ACTTGAGAGAAGAATCTGACACATTTG 59.827 37.037 0.00 0.00 35.54 2.32
114 115 7.222872 ACTTGAGAGAAGAATCTGACACATTT 58.777 34.615 0.00 0.00 35.54 2.32
115 116 6.767456 ACTTGAGAGAAGAATCTGACACATT 58.233 36.000 0.00 0.00 35.54 2.71
116 117 6.357579 ACTTGAGAGAAGAATCTGACACAT 57.642 37.500 0.00 0.00 35.54 3.21
117 118 5.798125 ACTTGAGAGAAGAATCTGACACA 57.202 39.130 0.00 0.00 35.54 3.72
118 119 6.588373 GGTTACTTGAGAGAAGAATCTGACAC 59.412 42.308 0.00 0.00 35.54 3.67
119 120 6.267699 TGGTTACTTGAGAGAAGAATCTGACA 59.732 38.462 0.00 0.00 35.54 3.58
120 121 6.692486 TGGTTACTTGAGAGAAGAATCTGAC 58.308 40.000 0.00 0.00 35.54 3.51
121 122 6.918067 TGGTTACTTGAGAGAAGAATCTGA 57.082 37.500 0.00 0.00 35.54 3.27
122 123 6.931281 TGTTGGTTACTTGAGAGAAGAATCTG 59.069 38.462 0.00 0.00 35.54 2.90
123 124 6.931840 GTGTTGGTTACTTGAGAGAAGAATCT 59.068 38.462 0.00 0.00 39.10 2.40
124 125 6.128795 CGTGTTGGTTACTTGAGAGAAGAATC 60.129 42.308 0.00 0.00 0.00 2.52
125 126 5.696724 CGTGTTGGTTACTTGAGAGAAGAAT 59.303 40.000 0.00 0.00 0.00 2.40
126 127 5.047847 CGTGTTGGTTACTTGAGAGAAGAA 58.952 41.667 0.00 0.00 0.00 2.52
127 128 4.340097 TCGTGTTGGTTACTTGAGAGAAGA 59.660 41.667 0.00 0.00 0.00 2.87
128 129 4.617959 TCGTGTTGGTTACTTGAGAGAAG 58.382 43.478 0.00 0.00 0.00 2.85
129 130 4.340097 TCTCGTGTTGGTTACTTGAGAGAA 59.660 41.667 0.00 0.00 34.77 2.87
130 131 3.887110 TCTCGTGTTGGTTACTTGAGAGA 59.113 43.478 0.00 0.00 34.77 3.10
131 132 4.238761 TCTCGTGTTGGTTACTTGAGAG 57.761 45.455 0.00 0.00 34.77 3.20
132 133 4.866508 ATCTCGTGTTGGTTACTTGAGA 57.133 40.909 0.00 0.00 39.93 3.27
133 134 6.035005 CACATATCTCGTGTTGGTTACTTGAG 59.965 42.308 0.00 0.00 33.04 3.02
134 135 5.867174 CACATATCTCGTGTTGGTTACTTGA 59.133 40.000 0.00 0.00 0.00 3.02
135 136 5.637810 ACACATATCTCGTGTTGGTTACTTG 59.362 40.000 0.00 0.00 45.12 3.16
136 137 5.637810 CACACATATCTCGTGTTGGTTACTT 59.362 40.000 0.00 0.00 45.12 2.24
137 138 5.168569 CACACATATCTCGTGTTGGTTACT 58.831 41.667 0.00 0.00 45.12 2.24
138 139 4.927425 ACACACATATCTCGTGTTGGTTAC 59.073 41.667 0.00 0.00 45.12 2.50
139 140 5.142061 ACACACATATCTCGTGTTGGTTA 57.858 39.130 0.00 0.00 45.12 2.85
140 141 4.002906 ACACACATATCTCGTGTTGGTT 57.997 40.909 0.00 0.00 45.12 3.67
141 142 3.678056 ACACACATATCTCGTGTTGGT 57.322 42.857 0.00 0.00 45.12 3.67
146 147 7.755582 TCTTAATGAACACACATATCTCGTG 57.244 36.000 0.00 0.00 40.32 4.35
147 148 8.251026 TCTTCTTAATGAACACACATATCTCGT 58.749 33.333 0.00 0.00 0.00 4.18
148 149 8.634475 TCTTCTTAATGAACACACATATCTCG 57.366 34.615 0.00 0.00 0.00 4.04
167 168 9.312904 TCCTCAAATCCATACAATTTTCTTCTT 57.687 29.630 0.00 0.00 0.00 2.52
168 169 8.884124 TCCTCAAATCCATACAATTTTCTTCT 57.116 30.769 0.00 0.00 0.00 2.85
171 172 9.258629 TGAATCCTCAAATCCATACAATTTTCT 57.741 29.630 0.00 0.00 0.00 2.52
178 179 9.865152 TCAATTATGAATCCTCAAATCCATACA 57.135 29.630 0.00 0.00 34.49 2.29
180 181 9.524496 CCTCAATTATGAATCCTCAAATCCATA 57.476 33.333 0.00 0.00 34.49 2.74
181 182 8.008922 ACCTCAATTATGAATCCTCAAATCCAT 58.991 33.333 0.00 0.00 34.49 3.41
182 183 7.356680 ACCTCAATTATGAATCCTCAAATCCA 58.643 34.615 0.00 0.00 34.49 3.41
183 184 7.830099 ACCTCAATTATGAATCCTCAAATCC 57.170 36.000 0.00 0.00 34.49 3.01
185 186 9.525826 GGATACCTCAATTATGAATCCTCAAAT 57.474 33.333 0.00 0.00 37.44 2.32
186 187 7.661437 CGGATACCTCAATTATGAATCCTCAAA 59.339 37.037 6.50 0.00 37.93 2.69
187 188 7.161404 CGGATACCTCAATTATGAATCCTCAA 58.839 38.462 6.50 0.00 37.93 3.02
188 189 6.295859 CCGGATACCTCAATTATGAATCCTCA 60.296 42.308 0.00 0.00 37.93 3.86
189 190 6.109359 CCGGATACCTCAATTATGAATCCTC 58.891 44.000 0.00 0.00 37.93 3.71
190 191 5.045578 CCCGGATACCTCAATTATGAATCCT 60.046 44.000 0.73 0.00 37.93 3.24
191 192 5.186198 CCCGGATACCTCAATTATGAATCC 58.814 45.833 0.73 0.00 37.22 3.01
192 193 5.805728 ACCCGGATACCTCAATTATGAATC 58.194 41.667 0.73 0.00 34.49 2.52
193 194 5.843019 ACCCGGATACCTCAATTATGAAT 57.157 39.130 0.73 0.00 34.49 2.57
194 195 5.104277 ACAACCCGGATACCTCAATTATGAA 60.104 40.000 0.73 0.00 34.49 2.57
195 196 4.410883 ACAACCCGGATACCTCAATTATGA 59.589 41.667 0.73 0.00 0.00 2.15
196 197 4.515191 CACAACCCGGATACCTCAATTATG 59.485 45.833 0.73 0.00 0.00 1.90
197 198 4.445735 CCACAACCCGGATACCTCAATTAT 60.446 45.833 0.73 0.00 0.00 1.28
198 199 3.118186 CCACAACCCGGATACCTCAATTA 60.118 47.826 0.73 0.00 0.00 1.40
199 200 2.356741 CCACAACCCGGATACCTCAATT 60.357 50.000 0.73 0.00 0.00 2.32
200 201 1.211949 CCACAACCCGGATACCTCAAT 59.788 52.381 0.73 0.00 0.00 2.57
201 202 0.616371 CCACAACCCGGATACCTCAA 59.384 55.000 0.73 0.00 0.00 3.02
202 203 0.252330 TCCACAACCCGGATACCTCA 60.252 55.000 0.73 0.00 0.00 3.86
203 204 0.906775 TTCCACAACCCGGATACCTC 59.093 55.000 0.73 0.00 30.99 3.85
204 205 1.003928 GTTTCCACAACCCGGATACCT 59.996 52.381 0.73 0.00 30.70 3.08
205 206 1.456296 GTTTCCACAACCCGGATACC 58.544 55.000 0.73 0.00 30.70 2.73
206 207 1.081094 CGTTTCCACAACCCGGATAC 58.919 55.000 0.73 0.00 32.83 2.24
207 208 0.975135 TCGTTTCCACAACCCGGATA 59.025 50.000 0.73 0.00 30.99 2.59
208 209 0.108963 TTCGTTTCCACAACCCGGAT 59.891 50.000 0.73 0.00 30.99 4.18
209 210 0.814812 GTTCGTTTCCACAACCCGGA 60.815 55.000 0.73 0.00 0.00 5.14
210 211 1.096386 TGTTCGTTTCCACAACCCGG 61.096 55.000 0.00 0.00 0.00 5.73
211 212 0.948678 ATGTTCGTTTCCACAACCCG 59.051 50.000 0.00 0.00 0.00 5.28
212 213 3.120041 CAAATGTTCGTTTCCACAACCC 58.880 45.455 0.00 0.00 0.00 4.11
213 214 3.549873 CACAAATGTTCGTTTCCACAACC 59.450 43.478 0.00 0.00 0.00 3.77
214 215 3.549873 CCACAAATGTTCGTTTCCACAAC 59.450 43.478 0.00 0.00 0.00 3.32
215 216 3.429547 CCCACAAATGTTCGTTTCCACAA 60.430 43.478 0.00 0.00 0.00 3.33
216 217 2.099921 CCCACAAATGTTCGTTTCCACA 59.900 45.455 0.00 0.00 0.00 4.17
217 218 2.544903 CCCCACAAATGTTCGTTTCCAC 60.545 50.000 0.00 0.00 0.00 4.02
218 219 1.683917 CCCCACAAATGTTCGTTTCCA 59.316 47.619 0.00 0.00 0.00 3.53
219 220 1.684450 ACCCCACAAATGTTCGTTTCC 59.316 47.619 0.00 0.00 0.00 3.13
220 221 2.359531 TGACCCCACAAATGTTCGTTTC 59.640 45.455 0.00 0.00 0.00 2.78
221 222 2.360801 CTGACCCCACAAATGTTCGTTT 59.639 45.455 0.00 0.00 0.00 3.60
222 223 1.953686 CTGACCCCACAAATGTTCGTT 59.046 47.619 0.00 0.00 0.00 3.85
223 224 1.142060 TCTGACCCCACAAATGTTCGT 59.858 47.619 0.00 0.00 0.00 3.85
241 242 1.076533 CAGCCGCGTACGTCAAATCT 61.077 55.000 17.90 3.25 37.70 2.40
248 249 4.657824 ACTTGCAGCCGCGTACGT 62.658 61.111 17.90 0.00 42.97 3.57
253 254 1.083806 TTAGATGACTTGCAGCCGCG 61.084 55.000 0.00 0.00 42.97 6.46
262 263 9.793259 TCCTTAAAAGAACATGTTAGATGACTT 57.207 29.630 11.95 6.60 0.00 3.01
263 264 9.793259 TTCCTTAAAAGAACATGTTAGATGACT 57.207 29.630 11.95 0.00 0.00 3.41
312 313 5.048364 AGTGCGGCAACATTTGAGTAAAATA 60.048 36.000 3.23 0.00 36.28 1.40
318 319 1.032014 AAGTGCGGCAACATTTGAGT 58.968 45.000 3.23 0.00 0.00 3.41
376 377 0.238289 AGTTTGCCACGCTTCATTCG 59.762 50.000 0.00 0.00 0.00 3.34
377 378 3.764885 ATAGTTTGCCACGCTTCATTC 57.235 42.857 0.00 0.00 0.00 2.67
381 382 1.732405 GCCAATAGTTTGCCACGCTTC 60.732 52.381 0.00 0.00 0.00 3.86
391 392 8.635765 TTTGAGAAAGACATAGCCAATAGTTT 57.364 30.769 0.00 0.00 0.00 2.66
434 435 1.847818 TTCGTACATCGGCACATAGC 58.152 50.000 0.00 0.00 44.65 2.97
435 436 2.538449 GGTTTCGTACATCGGCACATAG 59.462 50.000 0.00 0.00 40.32 2.23
436 437 2.094130 TGGTTTCGTACATCGGCACATA 60.094 45.455 0.00 0.00 40.32 2.29
437 438 1.338294 TGGTTTCGTACATCGGCACAT 60.338 47.619 0.00 0.00 40.32 3.21
438 439 0.033642 TGGTTTCGTACATCGGCACA 59.966 50.000 0.00 0.00 40.32 4.57
439 440 0.441145 GTGGTTTCGTACATCGGCAC 59.559 55.000 0.00 0.00 40.32 5.01
440 441 0.033642 TGTGGTTTCGTACATCGGCA 59.966 50.000 0.00 0.00 40.32 5.69
441 442 1.149987 TTGTGGTTTCGTACATCGGC 58.850 50.000 0.00 0.00 40.32 5.54
442 443 3.433957 TCATTTGTGGTTTCGTACATCGG 59.566 43.478 0.00 0.00 40.32 4.18
443 444 4.655440 TCATTTGTGGTTTCGTACATCG 57.345 40.909 0.00 0.00 41.41 3.84
444 445 4.851558 GCTTCATTTGTGGTTTCGTACATC 59.148 41.667 0.00 0.00 0.00 3.06
445 446 4.612712 CGCTTCATTTGTGGTTTCGTACAT 60.613 41.667 0.00 0.00 0.00 2.29
446 447 3.303461 CGCTTCATTTGTGGTTTCGTACA 60.303 43.478 0.00 0.00 0.00 2.90
451 452 2.393764 CCACGCTTCATTTGTGGTTTC 58.606 47.619 2.51 0.00 46.36 2.78
452 453 2.507339 CCACGCTTCATTTGTGGTTT 57.493 45.000 2.51 0.00 46.36 3.27
553 559 3.799420 CCGGCGAAAGTTTCAAAATGAAA 59.201 39.130 9.30 1.57 43.37 2.69
556 562 2.979813 CTCCGGCGAAAGTTTCAAAATG 59.020 45.455 9.30 0.20 0.00 2.32
557 563 2.621526 ACTCCGGCGAAAGTTTCAAAAT 59.378 40.909 9.30 0.00 0.00 1.82
738 1059 2.324477 CGTCAATTCCATCGCGGC 59.676 61.111 6.13 0.00 33.14 6.53
868 1268 5.301298 AGAGGGAGACGTGGTGTATTTATAC 59.699 44.000 0.00 0.00 0.00 1.47
898 1298 3.215568 TGCGGTGGTTGCAGGTTG 61.216 61.111 0.00 0.00 37.44 3.77
1011 1431 2.044946 AACAGGGCCGGCATCTTC 60.045 61.111 30.85 10.33 0.00 2.87
1084 1504 3.847602 CTCCTGCTGCTCCTCCCG 61.848 72.222 0.00 0.00 0.00 5.14
1085 1505 3.478274 CCTCCTGCTGCTCCTCCC 61.478 72.222 0.00 0.00 0.00 4.30
1161 1587 2.470286 GCGTCGAACTTGCGGAAG 59.530 61.111 15.80 15.80 35.07 3.46
1595 2021 1.323534 CGGACGACAACGGATTGAATC 59.676 52.381 0.00 0.00 44.46 2.52
1596 2022 1.355971 CGGACGACAACGGATTGAAT 58.644 50.000 0.00 0.00 44.46 2.57
1598 2024 1.735198 GCGGACGACAACGGATTGA 60.735 57.895 0.00 0.00 44.46 2.57
1599 2025 2.776072 GCGGACGACAACGGATTG 59.224 61.111 0.00 0.00 44.46 2.67
1600 2026 2.807895 CGCGGACGACAACGGATT 60.808 61.111 0.00 0.00 43.93 3.01
1611 2037 1.327764 GAAATCAATCTGTCCGCGGAC 59.672 52.381 43.88 43.88 44.77 4.79
1612 2038 1.651987 GAAATCAATCTGTCCGCGGA 58.348 50.000 27.28 27.28 0.00 5.54
1613 2039 0.301687 CGAAATCAATCTGTCCGCGG 59.698 55.000 22.12 22.12 0.00 6.46
1614 2040 0.999406 ACGAAATCAATCTGTCCGCG 59.001 50.000 0.00 0.00 0.00 6.46
1615 2041 1.327764 GGACGAAATCAATCTGTCCGC 59.672 52.381 0.00 0.00 39.67 5.54
1618 2044 2.222819 GCGTGGACGAAATCAATCTGTC 60.223 50.000 2.73 0.00 43.02 3.51
1619 2045 1.732259 GCGTGGACGAAATCAATCTGT 59.268 47.619 2.73 0.00 43.02 3.41
1620 2046 1.062587 GGCGTGGACGAAATCAATCTG 59.937 52.381 2.73 0.00 43.02 2.90
1621 2047 1.066143 AGGCGTGGACGAAATCAATCT 60.066 47.619 2.73 0.00 43.02 2.40
1622 2048 1.369625 AGGCGTGGACGAAATCAATC 58.630 50.000 2.73 0.00 43.02 2.67
1623 2049 1.737793 GAAGGCGTGGACGAAATCAAT 59.262 47.619 2.73 0.00 43.02 2.57
1624 2050 1.153353 GAAGGCGTGGACGAAATCAA 58.847 50.000 2.73 0.00 43.02 2.57
1625 2051 0.672401 GGAAGGCGTGGACGAAATCA 60.672 55.000 2.73 0.00 43.02 2.57
1718 2163 1.138047 ACGCACGTACGCTCTAATGC 61.138 55.000 16.72 15.25 36.19 3.56
1781 2242 4.146616 CGCGAGAGATTTCTGGTTATTACG 59.853 45.833 0.00 0.00 32.53 3.18
1790 2251 6.199908 AGACAATTATTCGCGAGAGATTTCTG 59.800 38.462 9.59 3.59 43.69 3.02
1841 2302 3.096092 GGCAACCTCACCAATTCCATTA 58.904 45.455 0.00 0.00 0.00 1.90
1852 2316 0.725117 CGATTAACCGGCAACCTCAC 59.275 55.000 0.00 0.00 0.00 3.51
1870 2360 5.551760 AGAACAATATGGCAAAAGAGTCG 57.448 39.130 0.00 0.00 0.00 4.18
1872 2362 6.265196 TGACAAGAACAATATGGCAAAAGAGT 59.735 34.615 0.00 0.00 0.00 3.24
1873 2363 6.680810 TGACAAGAACAATATGGCAAAAGAG 58.319 36.000 0.00 0.00 0.00 2.85
1874 2364 6.647334 TGACAAGAACAATATGGCAAAAGA 57.353 33.333 0.00 0.00 0.00 2.52
1875 2365 7.318141 AGATGACAAGAACAATATGGCAAAAG 58.682 34.615 0.00 0.00 35.34 2.27
1876 2366 7.177216 AGAGATGACAAGAACAATATGGCAAAA 59.823 33.333 0.00 0.00 35.34 2.44
1884 2374 6.091305 CGAAAGCAGAGATGACAAGAACAATA 59.909 38.462 0.00 0.00 0.00 1.90
1918 2408 2.629022 CTCACAAACGCGTGAAAAGAG 58.371 47.619 14.98 13.27 44.97 2.85
1967 2462 6.490381 CAGATCCAGACATCCAAATCATGATT 59.510 38.462 15.36 15.36 0.00 2.57
1968 2463 6.004574 CAGATCCAGACATCCAAATCATGAT 58.995 40.000 1.18 1.18 0.00 2.45
1969 2464 5.104235 ACAGATCCAGACATCCAAATCATGA 60.104 40.000 0.00 0.00 0.00 3.07
1970 2465 5.008712 CACAGATCCAGACATCCAAATCATG 59.991 44.000 0.00 0.00 0.00 3.07
1977 2482 3.584406 AGAAACACAGATCCAGACATCCA 59.416 43.478 0.00 0.00 0.00 3.41
2004 2516 2.135664 CGTCCATACGTCCAGATTCC 57.864 55.000 0.00 0.00 44.21 3.01
2025 2537 1.948611 GCCGCAGTTTCCAGGTTATGA 60.949 52.381 0.00 0.00 0.00 2.15
2043 2555 2.527442 GCGAAGAATTATATGGCGCC 57.473 50.000 22.73 22.73 37.32 6.53
2051 2563 0.462789 ACCGACGGGCGAAGAATTAT 59.537 50.000 20.00 0.00 44.57 1.28
2053 2565 1.004200 AACCGACGGGCGAAGAATT 60.004 52.632 20.00 0.00 44.57 2.17
2073 2585 1.141053 ACCCAAACAAGAAGACGAGCT 59.859 47.619 0.00 0.00 0.00 4.09
2092 2604 2.287009 CCTCTTGGACGCAACTGAAAAC 60.287 50.000 0.00 0.00 34.57 2.43
2096 2608 1.371183 CCCTCTTGGACGCAACTGA 59.629 57.895 0.00 0.00 35.39 3.41
2154 2706 4.318475 GCGCACGCAGTACATATATTTCAA 60.318 41.667 10.65 0.00 41.61 2.69
2165 2717 3.070060 GTGTAGCGCACGCAGTAC 58.930 61.111 18.24 12.03 41.61 2.73
2173 2725 2.509111 CGCCTGATGTGTAGCGCA 60.509 61.111 11.47 0.00 42.31 6.09
2178 2730 4.678622 CATTGTACTACGCCTGATGTGTA 58.321 43.478 0.00 0.00 38.91 2.90
2179 2731 3.521560 CATTGTACTACGCCTGATGTGT 58.478 45.455 0.00 0.00 41.55 3.72
2180 2732 2.285220 GCATTGTACTACGCCTGATGTG 59.715 50.000 0.00 0.00 0.00 3.21
2181 2733 2.093711 TGCATTGTACTACGCCTGATGT 60.094 45.455 0.00 0.00 0.00 3.06
2183 2735 2.550978 GTGCATTGTACTACGCCTGAT 58.449 47.619 0.00 0.00 0.00 2.90
2220 2856 2.721425 TTTCCACCCTCGAACAAAGT 57.279 45.000 0.00 0.00 0.00 2.66
2223 2859 3.827722 AGAAATTTCCACCCTCGAACAA 58.172 40.909 14.61 0.00 0.00 2.83
2226 2862 4.041198 ACTGTAGAAATTTCCACCCTCGAA 59.959 41.667 14.61 0.00 0.00 3.71
2227 2863 3.581332 ACTGTAGAAATTTCCACCCTCGA 59.419 43.478 14.61 0.00 0.00 4.04
2228 2864 3.684788 CACTGTAGAAATTTCCACCCTCG 59.315 47.826 14.61 3.41 0.00 4.63
2287 2923 2.556287 CGTTTGGAAGCACGAGGC 59.444 61.111 0.00 0.00 45.30 4.70
2334 2970 1.003233 AGTGCTGGGTTTACTAGTGCC 59.997 52.381 5.39 5.07 0.00 5.01
2342 2978 4.414337 AAAAATGCAAGTGCTGGGTTTA 57.586 36.364 4.69 0.00 42.66 2.01
2365 3001 2.024273 AGGTCCTGGAATCTCTCGGTTA 60.024 50.000 0.00 0.00 0.00 2.85
2369 3005 1.769026 TCAGGTCCTGGAATCTCTCG 58.231 55.000 19.11 0.00 31.51 4.04
2406 3044 3.842869 CTGAGCACCAGGTTAGGAC 57.157 57.895 0.00 0.00 39.23 3.85
2477 3127 4.245660 GCTTGATGCTAACACTACTGACA 58.754 43.478 0.00 0.00 38.95 3.58
2492 3142 1.134907 GCCCATGTTCCAAGCTTGATG 60.135 52.381 28.05 20.79 0.00 3.07
2511 3161 3.117171 CTGTCAGTGGCTGCGAGC 61.117 66.667 0.00 0.11 41.46 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.