Multiple sequence alignment - TraesCS3A01G487200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G487200 chr3A 100.000 8358 0 0 1 8358 714943623 714951980 0.000000e+00 15435.0
1 TraesCS3A01G487200 chr3A 81.000 1900 263 50 2937 4792 607835661 607837506 0.000000e+00 1419.0
2 TraesCS3A01G487200 chr3A 86.168 1229 143 20 6152 7363 679846162 679847380 0.000000e+00 1303.0
3 TraesCS3A01G487200 chr3A 84.167 1219 143 24 2937 4135 714778345 714779533 0.000000e+00 1136.0
4 TraesCS3A01G487200 chr3A 80.142 1128 134 48 4133 5222 714779807 714780882 0.000000e+00 760.0
5 TraesCS3A01G487200 chr3A 90.423 449 21 9 5239 5667 679845703 679846149 9.410000e-159 571.0
6 TraesCS3A01G487200 chr3A 88.049 410 31 10 4824 5222 679845314 679845716 3.530000e-128 470.0
7 TraesCS3A01G487200 chr3A 91.205 307 25 2 989 1295 714776468 714776772 4.670000e-112 416.0
8 TraesCS3A01G487200 chr3A 94.410 161 9 0 7203 7363 607839469 607839629 1.800000e-61 248.0
9 TraesCS3A01G487200 chr3A 92.683 164 9 1 7203 7363 714782324 714782487 5.040000e-57 233.0
10 TraesCS3A01G487200 chr3A 87.234 188 19 5 48 232 713661114 713661299 8.500000e-50 209.0
11 TraesCS3A01G487200 chr3A 83.974 156 15 3 5648 5802 638894473 638894327 3.150000e-29 141.0
12 TraesCS3A01G487200 chr3B 93.053 4333 195 52 1004 5305 774468967 774473224 0.000000e+00 6237.0
13 TraesCS3A01G487200 chr3B 80.399 2454 331 79 2415 4782 734987771 734985382 0.000000e+00 1729.0
14 TraesCS3A01G487200 chr3B 89.977 1327 104 15 6369 7681 774474253 774475564 0.000000e+00 1687.0
15 TraesCS3A01G487200 chr3B 82.470 1603 206 31 2937 4505 774391473 774393034 0.000000e+00 1334.0
16 TraesCS3A01G487200 chr3B 85.320 1233 155 21 6151 7366 734970857 734969634 0.000000e+00 1251.0
17 TraesCS3A01G487200 chr3B 89.479 960 92 6 6151 7103 774169920 774170877 0.000000e+00 1205.0
18 TraesCS3A01G487200 chr3B 78.963 984 140 41 1375 2312 774165471 774166433 7.170000e-170 608.0
19 TraesCS3A01G487200 chr3B 91.591 440 32 3 800 1234 774235575 774236014 3.340000e-168 603.0
20 TraesCS3A01G487200 chr3B 78.690 962 147 33 1389 2319 774239269 774240203 9.350000e-164 588.0
21 TraesCS3A01G487200 chr3B 90.179 448 20 10 5239 5667 774169466 774169908 5.660000e-156 562.0
22 TraesCS3A01G487200 chr3B 90.090 444 23 9 5325 5750 774473355 774473795 2.640000e-154 556.0
23 TraesCS3A01G487200 chr3B 80.581 757 106 21 1587 2319 734990580 734989841 5.700000e-151 545.0
24 TraesCS3A01G487200 chr3B 89.059 393 21 9 5301 5673 734971252 734970862 1.270000e-127 468.0
25 TraesCS3A01G487200 chr3B 86.270 437 45 13 882 1307 774165032 774165464 2.130000e-125 460.0
26 TraesCS3A01G487200 chr3B 83.656 465 40 17 882 1318 734993028 734992572 1.010000e-108 405.0
27 TraesCS3A01G487200 chr3B 95.152 165 7 1 7200 7363 774170908 774171072 8.320000e-65 259.0
28 TraesCS3A01G487200 chr3B 91.411 163 9 4 8156 8315 774475678 774475838 1.410000e-52 219.0
29 TraesCS3A01G487200 chr3B 82.692 156 16 4 5648 5802 774394397 774394542 2.450000e-25 128.0
30 TraesCS3A01G487200 chr3B 87.500 72 4 1 8052 8123 774475601 774475667 2.500000e-10 78.7
31 TraesCS3A01G487200 chr3D 95.804 3670 120 16 1571 5222 579727056 579730709 0.000000e+00 5893.0
32 TraesCS3A01G487200 chr3D 87.011 1686 146 42 5988 7617 579731584 579733252 0.000000e+00 1832.0
33 TraesCS3A01G487200 chr3D 83.612 1495 186 22 3041 4505 579678025 579679490 0.000000e+00 1349.0
34 TraesCS3A01G487200 chr3D 89.634 984 85 6 6111 7086 579681126 579682100 0.000000e+00 1236.0
35 TraesCS3A01G487200 chr3D 90.453 618 38 10 809 1416 579726124 579726730 0.000000e+00 795.0
36 TraesCS3A01G487200 chr3D 98.950 381 1 3 5226 5603 579730872 579731252 0.000000e+00 678.0
37 TraesCS3A01G487200 chr3D 90.869 449 19 8 5239 5667 579680190 579680636 4.350000e-162 582.0
38 TraesCS3A01G487200 chr3D 81.105 688 78 28 4548 5222 579679555 579680203 3.480000e-138 503.0
39 TraesCS3A01G487200 chr3D 77.546 766 92 37 52 784 16190421 16189703 1.020000e-103 388.0
40 TraesCS3A01G487200 chr3D 79.916 478 82 10 2458 2928 579677307 579677777 1.040000e-88 339.0
41 TraesCS3A01G487200 chr3D 95.082 183 8 1 5616 5798 579731365 579731546 3.820000e-73 287.0
42 TraesCS3A01G487200 chr3D 94.444 126 7 0 1468 1593 579726744 579726869 2.380000e-45 195.0
43 TraesCS3A01G487200 chr3D 82.258 248 22 11 8000 8233 579733725 579733964 2.380000e-45 195.0
44 TraesCS3A01G487200 chr3D 90.435 115 8 2 7877 7988 579733499 579733613 1.880000e-31 148.0
45 TraesCS3A01G487200 chr3D 83.333 156 14 5 5648 5802 579680800 579680944 5.260000e-27 134.0
46 TraesCS3A01G487200 chr3D 89.286 56 6 0 8156 8211 579682790 579682845 4.190000e-08 71.3
47 TraesCS3A01G487200 chr7D 82.458 2343 278 64 2937 5222 600052844 600055110 0.000000e+00 1927.0
48 TraesCS3A01G487200 chr7D 90.369 976 87 4 6111 7079 600056054 600057029 0.000000e+00 1275.0
49 TraesCS3A01G487200 chr7D 83.558 742 74 26 48 778 465889644 465890348 0.000000e+00 651.0
50 TraesCS3A01G487200 chr7D 90.869 449 19 8 5239 5667 600055097 600055543 4.350000e-162 582.0
51 TraesCS3A01G487200 chr7D 85.969 449 41 10 882 1313 600050846 600051289 2.130000e-125 460.0
52 TraesCS3A01G487200 chr7D 97.661 171 4 0 5817 5987 388406033 388405863 2.280000e-75 294.0
53 TraesCS3A01G487200 chr7D 95.858 169 4 1 5822 5987 586763335 586763167 3.840000e-68 270.0
54 TraesCS3A01G487200 chr7D 94.828 174 6 1 5817 5987 130767085 130767258 1.380000e-67 268.0
55 TraesCS3A01G487200 chr7D 82.803 157 16 4 5648 5802 600055725 600055872 6.810000e-26 130.0
56 TraesCS3A01G487200 chr1B 79.984 2448 334 80 1673 4017 146963088 146960694 0.000000e+00 1663.0
57 TraesCS3A01G487200 chr1B 87.431 1273 131 22 6111 7366 596168619 596169879 0.000000e+00 1437.0
58 TraesCS3A01G487200 chr1B 78.419 2150 313 84 1477 3522 116126647 116128749 0.000000e+00 1260.0
59 TraesCS3A01G487200 chr1B 79.267 955 118 43 4301 5220 116139062 116139971 2.010000e-165 593.0
60 TraesCS3A01G487200 chr1B 90.444 450 20 9 5239 5667 596167674 596168121 9.410000e-159 571.0
61 TraesCS3A01G487200 chr1B 80.865 763 96 27 45 784 190307828 190308563 9.480000e-154 555.0
62 TraesCS3A01G487200 chr1B 80.809 766 85 35 48 781 357648127 357648862 2.050000e-150 544.0
63 TraesCS3A01G487200 chr1B 87.529 425 35 9 4807 5220 146952429 146952012 7.590000e-130 475.0
64 TraesCS3A01G487200 chr1B 84.713 471 56 7 4044 4505 146953119 146952656 2.750000e-124 457.0
65 TraesCS3A01G487200 chr1B 94.505 182 8 2 5807 5987 603210872 603211052 6.390000e-71 279.0
66 TraesCS3A01G487200 chr1B 96.970 165 5 0 5822 5986 562056616 562056452 2.300000e-70 278.0
67 TraesCS3A01G487200 chr1B 78.914 313 54 11 57 367 668709562 668709260 1.420000e-47 202.0
68 TraesCS3A01G487200 chr1B 84.000 150 14 5 5653 5802 596168299 596168438 1.460000e-27 135.0
69 TraesCS3A01G487200 chr1B 93.023 43 2 1 747 789 283435228 283435187 2.520000e-05 62.1
70 TraesCS3A01G487200 chr1D 82.283 1603 206 39 3218 4782 96069586 96068024 0.000000e+00 1315.0
71 TraesCS3A01G487200 chr1D 90.300 1000 91 2 6114 7107 96042732 96041733 0.000000e+00 1304.0
72 TraesCS3A01G487200 chr1D 86.689 1172 127 21 6205 7363 439353130 439354285 0.000000e+00 1273.0
73 TraesCS3A01G487200 chr1D 89.641 1004 91 6 6111 7107 64329133 64330130 0.000000e+00 1266.0
74 TraesCS3A01G487200 chr1D 84.186 1271 156 21 3218 4468 64326001 64327246 0.000000e+00 1192.0
75 TraesCS3A01G487200 chr1D 80.493 974 134 37 1379 2319 96071571 96070621 0.000000e+00 695.0
76 TraesCS3A01G487200 chr1D 80.576 973 124 41 1379 2312 64324010 64324956 0.000000e+00 689.0
77 TraesCS3A01G487200 chr1D 93.247 385 22 4 5239 5622 96067624 96067243 1.570000e-156 564.0
78 TraesCS3A01G487200 chr1D 89.978 449 23 8 5239 5667 64328167 64328613 2.040000e-155 560.0
79 TraesCS3A01G487200 chr1D 81.525 682 71 33 4554 5222 64327541 64328180 2.080000e-140 510.0
80 TraesCS3A01G487200 chr1D 85.780 436 29 13 905 1310 96072011 96071579 1.670000e-116 431.0
81 TraesCS3A01G487200 chr1D 84.000 150 14 3 5653 5802 439346988 439347127 1.460000e-27 135.0
82 TraesCS3A01G487200 chr1D 83.444 151 15 3 5652 5802 96066990 96066850 1.890000e-26 132.0
83 TraesCS3A01G487200 chr1D 81.013 158 18 4 5648 5802 64328803 64328951 1.910000e-21 115.0
84 TraesCS3A01G487200 chr7B 85.320 1233 146 25 6151 7363 6976725 6977942 0.000000e+00 1242.0
85 TraesCS3A01G487200 chr7B 83.042 1203 157 20 2937 4123 6953999 6955170 0.000000e+00 1048.0
86 TraesCS3A01G487200 chr7B 90.380 447 19 9 5241 5667 6976271 6976713 4.380000e-157 566.0
87 TraesCS3A01G487200 chr7B 81.301 246 23 15 531 776 750131515 750131293 2.400000e-40 178.0
88 TraesCS3A01G487200 chr6A 88.017 968 97 10 6151 7107 121732386 121731427 0.000000e+00 1127.0
89 TraesCS3A01G487200 chr6A 80.982 1446 183 37 2937 4354 121738140 121736759 0.000000e+00 1062.0
90 TraesCS3A01G487200 chr6A 82.014 556 84 13 48 597 539617288 539617833 7.650000e-125 459.0
91 TraesCS3A01G487200 chr6A 90.909 319 25 3 979 1295 121745296 121744980 7.750000e-115 425.0
92 TraesCS3A01G487200 chr6A 78.355 693 90 38 1401 2065 121744960 121744300 2.190000e-105 394.0
93 TraesCS3A01G487200 chr6A 93.293 164 11 0 7203 7366 121731308 121731145 8.380000e-60 243.0
94 TraesCS3A01G487200 chr6A 89.286 56 6 0 8156 8211 121730737 121730682 4.190000e-08 71.3
95 TraesCS3A01G487200 chr6D 85.831 734 78 17 48 778 166777350 166778060 0.000000e+00 756.0
96 TraesCS3A01G487200 chr6D 95.930 172 4 1 5819 5987 433275379 433275550 8.260000e-70 276.0
97 TraesCS3A01G487200 chr2A 81.675 764 95 28 48 785 607877697 607876953 2.010000e-165 593.0
98 TraesCS3A01G487200 chr2A 81.298 262 39 8 431 691 777096459 777096711 3.960000e-48 204.0
99 TraesCS3A01G487200 chr5D 86.008 486 55 9 48 530 390700903 390701378 7.480000e-140 508.0
100 TraesCS3A01G487200 chr5D 84.030 263 31 6 530 785 390702493 390702751 8.380000e-60 243.0
101 TraesCS3A01G487200 chrUn 87.010 408 33 9 795 1183 184904920 184904514 7.700000e-120 442.0
102 TraesCS3A01G487200 chrUn 87.010 408 33 9 795 1183 355713700 355714106 7.700000e-120 442.0
103 TraesCS3A01G487200 chrUn 86.978 407 34 8 795 1183 184904210 184903805 2.770000e-119 440.0
104 TraesCS3A01G487200 chrUn 86.978 407 34 8 795 1183 246663178 246663583 2.770000e-119 440.0
105 TraesCS3A01G487200 chrUn 86.978 407 34 8 795 1183 355714410 355714815 2.770000e-119 440.0
106 TraesCS3A01G487200 chrUn 86.765 408 34 9 795 1183 246662468 246662874 3.580000e-118 436.0
107 TraesCS3A01G487200 chrUn 77.043 514 83 26 282 784 23498481 23497992 6.430000e-66 263.0
108 TraesCS3A01G487200 chr2B 86.978 407 34 8 795 1183 755387260 755387665 2.770000e-119 440.0
109 TraesCS3A01G487200 chr2B 80.403 546 73 17 48 589 641658138 641657623 1.320000e-102 385.0
110 TraesCS3A01G487200 chr2B 83.285 347 31 11 1 324 88183517 88183175 2.280000e-75 294.0
111 TraesCS3A01G487200 chr2B 81.921 354 29 20 454 778 88183155 88182808 4.970000e-67 267.0
112 TraesCS3A01G487200 chr5B 81.329 557 86 14 48 598 61153897 61154441 3.580000e-118 436.0
113 TraesCS3A01G487200 chr5B 96.491 171 6 0 5816 5986 439251867 439252037 4.940000e-72 283.0
114 TraesCS3A01G487200 chr5B 97.006 167 5 0 5822 5988 570390790 570390624 1.780000e-71 281.0
115 TraesCS3A01G487200 chr2D 94.737 171 9 0 5818 5988 202100950 202101120 4.970000e-67 267.0
116 TraesCS3A01G487200 chr6B 86.420 243 20 10 540 778 380542102 380541869 3.870000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G487200 chr3A 714943623 714951980 8357 False 15435.000000 15435 100.000000 1 8358 1 chr3A.!!$F2 8357
1 TraesCS3A01G487200 chr3A 607835661 607839629 3968 False 833.500000 1419 87.705000 2937 7363 2 chr3A.!!$F3 4426
2 TraesCS3A01G487200 chr3A 679845314 679847380 2066 False 781.333333 1303 88.213333 4824 7363 3 chr3A.!!$F4 2539
3 TraesCS3A01G487200 chr3A 714776468 714782487 6019 False 636.250000 1136 87.049250 989 7363 4 chr3A.!!$F5 6374
4 TraesCS3A01G487200 chr3B 774468967 774475838 6871 False 1755.540000 6237 90.406200 1004 8315 5 chr3B.!!$F4 7311
5 TraesCS3A01G487200 chr3B 734985382 734993028 7646 True 893.000000 1729 81.545333 882 4782 3 chr3B.!!$R2 3900
6 TraesCS3A01G487200 chr3B 734969634 734971252 1618 True 859.500000 1251 87.189500 5301 7366 2 chr3B.!!$R1 2065
7 TraesCS3A01G487200 chr3B 774391473 774394542 3069 False 731.000000 1334 82.581000 2937 5802 2 chr3B.!!$F3 2865
8 TraesCS3A01G487200 chr3B 774165032 774171072 6040 False 618.800000 1205 88.008600 882 7363 5 chr3B.!!$F1 6481
9 TraesCS3A01G487200 chr3B 774235575 774240203 4628 False 595.500000 603 85.140500 800 2319 2 chr3B.!!$F2 1519
10 TraesCS3A01G487200 chr3D 579726124 579733964 7840 False 1252.875000 5893 91.804625 809 8233 8 chr3D.!!$F2 7424
11 TraesCS3A01G487200 chr3D 579677307 579682845 5538 False 602.042857 1349 85.393571 2458 8211 7 chr3D.!!$F1 5753
12 TraesCS3A01G487200 chr3D 16189703 16190421 718 True 388.000000 388 77.546000 52 784 1 chr3D.!!$R1 732
13 TraesCS3A01G487200 chr7D 600050846 600057029 6183 False 874.800000 1927 86.493600 882 7079 5 chr7D.!!$F3 6197
14 TraesCS3A01G487200 chr7D 465889644 465890348 704 False 651.000000 651 83.558000 48 778 1 chr7D.!!$F2 730
15 TraesCS3A01G487200 chr1B 146960694 146963088 2394 True 1663.000000 1663 79.984000 1673 4017 1 chr1B.!!$R1 2344
16 TraesCS3A01G487200 chr1B 116126647 116128749 2102 False 1260.000000 1260 78.419000 1477 3522 1 chr1B.!!$F1 2045
17 TraesCS3A01G487200 chr1B 596167674 596169879 2205 False 714.333333 1437 87.291667 5239 7366 3 chr1B.!!$F6 2127
18 TraesCS3A01G487200 chr1B 116139062 116139971 909 False 593.000000 593 79.267000 4301 5220 1 chr1B.!!$F2 919
19 TraesCS3A01G487200 chr1B 190307828 190308563 735 False 555.000000 555 80.865000 45 784 1 chr1B.!!$F3 739
20 TraesCS3A01G487200 chr1B 357648127 357648862 735 False 544.000000 544 80.809000 48 781 1 chr1B.!!$F4 733
21 TraesCS3A01G487200 chr1B 146952012 146953119 1107 True 466.000000 475 86.121000 4044 5220 2 chr1B.!!$R5 1176
22 TraesCS3A01G487200 chr1D 96041733 96042732 999 True 1304.000000 1304 90.300000 6114 7107 1 chr1D.!!$R1 993
23 TraesCS3A01G487200 chr1D 439353130 439354285 1155 False 1273.000000 1273 86.689000 6205 7363 1 chr1D.!!$F2 1158
24 TraesCS3A01G487200 chr1D 64324010 64330130 6120 False 722.000000 1266 84.486500 1379 7107 6 chr1D.!!$F3 5728
25 TraesCS3A01G487200 chr1D 96066850 96072011 5161 True 627.400000 1315 85.049400 905 5802 5 chr1D.!!$R2 4897
26 TraesCS3A01G487200 chr7B 6953999 6955170 1171 False 1048.000000 1048 83.042000 2937 4123 1 chr7B.!!$F1 1186
27 TraesCS3A01G487200 chr7B 6976271 6977942 1671 False 904.000000 1242 87.850000 5241 7363 2 chr7B.!!$F2 2122
28 TraesCS3A01G487200 chr6A 121736759 121738140 1381 True 1062.000000 1062 80.982000 2937 4354 1 chr6A.!!$R1 1417
29 TraesCS3A01G487200 chr6A 121730682 121732386 1704 True 480.433333 1127 90.198667 6151 8211 3 chr6A.!!$R2 2060
30 TraesCS3A01G487200 chr6A 539617288 539617833 545 False 459.000000 459 82.014000 48 597 1 chr6A.!!$F1 549
31 TraesCS3A01G487200 chr6A 121744300 121745296 996 True 409.500000 425 84.632000 979 2065 2 chr6A.!!$R3 1086
32 TraesCS3A01G487200 chr6D 166777350 166778060 710 False 756.000000 756 85.831000 48 778 1 chr6D.!!$F1 730
33 TraesCS3A01G487200 chr2A 607876953 607877697 744 True 593.000000 593 81.675000 48 785 1 chr2A.!!$R1 737
34 TraesCS3A01G487200 chr5D 390700903 390702751 1848 False 375.500000 508 85.019000 48 785 2 chr5D.!!$F1 737
35 TraesCS3A01G487200 chrUn 184903805 184904920 1115 True 441.000000 442 86.994000 795 1183 2 chrUn.!!$R2 388
36 TraesCS3A01G487200 chrUn 355713700 355714815 1115 False 441.000000 442 86.994000 795 1183 2 chrUn.!!$F2 388
37 TraesCS3A01G487200 chrUn 246662468 246663583 1115 False 438.000000 440 86.871500 795 1183 2 chrUn.!!$F1 388
38 TraesCS3A01G487200 chr2B 641657623 641658138 515 True 385.000000 385 80.403000 48 589 1 chr2B.!!$R1 541
39 TraesCS3A01G487200 chr2B 88182808 88183517 709 True 280.500000 294 82.603000 1 778 2 chr2B.!!$R2 777
40 TraesCS3A01G487200 chr5B 61153897 61154441 544 False 436.000000 436 81.329000 48 598 1 chr5B.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 1897 0.753262 CCGGAACTGCCAGCTATACT 59.247 55.000 0.00 0.0 35.94 2.12 F
2017 8579 0.329261 CAGGGTCCAGCCTTGATTCA 59.671 55.000 0.00 0.0 46.27 2.57 F
2055 8617 1.447314 CGCCAGGAGAAACGGGTAC 60.447 63.158 0.00 0.0 0.00 3.34 F
2099 8661 2.102588 ACTCGCGTGGCCTATAAATCTT 59.897 45.455 13.32 0.0 0.00 2.40 F
2456 11024 3.641906 GGAAATGATAAGAGGGACGGAGA 59.358 47.826 0.00 0.0 0.00 3.71 F
4088 12940 2.299326 AAGCAGGCAATTCCAGTTCT 57.701 45.000 0.00 0.0 37.29 3.01 F
5846 15988 0.532862 CGAAGCCACACTTGACCTGT 60.533 55.000 0.00 0.0 39.29 4.00 F
5850 15992 1.072331 AGCCACACTTGACCTGTTAGG 59.928 52.381 0.00 0.0 42.49 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2597 11167 0.256752 TGGGCTGCTCATAGTGCAAT 59.743 50.000 0.00 0.0 40.13 3.56 R
3020 11637 2.537143 ACGTGAGAACCCTATGAACCT 58.463 47.619 0.00 0.0 0.00 3.50 R
3442 12273 5.065914 TGCCTGCTTCTATTCCATCAATAC 58.934 41.667 0.00 0.0 0.00 1.89 R
4018 12864 5.975693 AAAATTCTCGGAACCTGCAATTA 57.024 34.783 0.00 0.0 0.00 1.40 R
4186 13409 2.100916 GAGGAGAATTAGTAGCACGGCA 59.899 50.000 0.00 0.0 0.00 5.69 R
5962 16104 0.512952 GCGGTGCCACGAATCATATC 59.487 55.000 0.98 0.0 35.47 1.63 R
6924 17165 0.252197 GGCATGAAACGGACTACCCT 59.748 55.000 0.00 0.0 0.00 4.34 R
7804 18272 1.040646 ATCGTACCATGTCATCGGCT 58.959 50.000 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 144 8.934825 TGAAGAACAAAATTTTGAACCTGAAAG 58.065 29.630 32.20 6.93 40.55 2.62
136 156 9.833182 TTTTGAACCTGAAAGCAATTTTAAAAC 57.167 25.926 1.97 0.00 0.00 2.43
320 349 7.911727 AGCTTTTCAAATGCAGAACAAAATTTC 59.088 29.630 10.41 0.00 0.00 2.17
431 463 9.974980 AAAAAGAAACATTGGTATAACACGAAT 57.025 25.926 0.00 0.00 36.13 3.34
433 465 9.974980 AAAGAAACATTGGTATAACACGAATTT 57.025 25.926 0.00 0.00 33.73 1.82
434 466 8.964420 AGAAACATTGGTATAACACGAATTTG 57.036 30.769 0.00 0.00 33.73 2.32
691 1897 0.753262 CCGGAACTGCCAGCTATACT 59.247 55.000 0.00 0.00 35.94 2.12
692 1898 1.139058 CCGGAACTGCCAGCTATACTT 59.861 52.381 0.00 0.00 35.94 2.24
693 1899 2.474816 CGGAACTGCCAGCTATACTTC 58.525 52.381 0.00 0.00 35.94 3.01
694 1900 2.803492 CGGAACTGCCAGCTATACTTCC 60.803 54.545 0.00 0.00 35.94 3.46
695 1901 2.170607 GGAACTGCCAGCTATACTTCCA 59.829 50.000 5.01 0.00 36.34 3.53
698 1904 2.774234 ACTGCCAGCTATACTTCCATGT 59.226 45.455 0.00 0.00 0.00 3.21
709 1915 9.755122 AGCTATACTTCCATGTATGTGTAGATA 57.245 33.333 10.69 0.00 35.14 1.98
737 1943 1.819632 AATCAATCGCGCCCCTGTC 60.820 57.895 0.00 0.00 0.00 3.51
766 1972 1.600663 CGACACTTTGACGCAGAGAGT 60.601 52.381 4.79 3.19 0.00 3.24
828 2034 1.669265 GTTTACTAATCGTGCCCCTGC 59.331 52.381 0.00 0.00 38.26 4.85
1238 2519 1.885049 TTTCCCCCATCTCTCTCAGG 58.115 55.000 0.00 0.00 0.00 3.86
1315 2599 2.515991 GATTTGGATCGGGCGGCA 60.516 61.111 12.47 0.00 0.00 5.69
1316 2600 2.516930 ATTTGGATCGGGCGGCAG 60.517 61.111 12.47 7.15 0.00 4.85
1445 2729 1.270358 CGTTAGCCCTGGGATCTTAGC 60.270 57.143 19.27 0.00 0.00 3.09
1463 2752 7.202016 TCTTAGCTTTGTTTGGTTGATGTAG 57.798 36.000 0.00 0.00 0.00 2.74
1472 4567 2.503331 TGGTTGATGTAGTGTGCCTTG 58.497 47.619 0.00 0.00 0.00 3.61
1521 4617 4.547532 GATTTGATCTGAGCATGCATTCC 58.452 43.478 21.98 6.46 0.00 3.01
1619 4959 5.677091 GCTGGTGTATGCTGAAATCGATTTT 60.677 40.000 23.49 10.60 0.00 1.82
1631 4971 1.226660 CGATTTTGGCCATGACCGC 60.227 57.895 6.09 0.00 0.00 5.68
1635 4975 1.621992 TTTTGGCCATGACCGCTTTA 58.378 45.000 6.09 0.00 0.00 1.85
1671 5018 5.489249 TGTATTCATACCACGTTTAAGCCA 58.511 37.500 0.00 0.00 32.33 4.75
1700 5047 0.680618 TTGGGATTTGCCTGCAAGTG 59.319 50.000 4.51 0.00 37.24 3.16
1710 5057 2.509548 TGCCTGCAAGTGGATAACCTAT 59.490 45.455 0.00 0.00 37.04 2.57
1802 5176 5.907197 TCTTTTCTGTGTTGAATCGAGAC 57.093 39.130 0.00 0.00 0.00 3.36
1804 5178 3.636282 TTCTGTGTTGAATCGAGACGA 57.364 42.857 0.00 0.00 41.13 4.20
2017 8579 0.329261 CAGGGTCCAGCCTTGATTCA 59.671 55.000 0.00 0.00 46.27 2.57
2055 8617 1.447314 CGCCAGGAGAAACGGGTAC 60.447 63.158 0.00 0.00 0.00 3.34
2099 8661 2.102588 ACTCGCGTGGCCTATAAATCTT 59.897 45.455 13.32 0.00 0.00 2.40
2164 8733 5.745227 TCCTCTTCAGTTTTCTCAACAGTT 58.255 37.500 0.00 0.00 0.00 3.16
2371 8985 5.778750 AGTAGTAGCAACCTTAGGACAAAGA 59.221 40.000 4.77 0.00 0.00 2.52
2373 8987 4.838986 AGTAGCAACCTTAGGACAAAGAGA 59.161 41.667 4.77 0.00 0.00 3.10
2413 9043 4.639334 TGAATATGCAAGAGGAGATGCTC 58.361 43.478 0.00 0.00 42.97 4.26
2456 11024 3.641906 GGAAATGATAAGAGGGACGGAGA 59.358 47.826 0.00 0.00 0.00 3.71
2601 11171 4.576053 TGCATCACTAACTATGTCCATTGC 59.424 41.667 0.00 0.00 0.00 3.56
2703 11279 8.002984 TGAAAAACTTAACGGAAAAGGATCTT 57.997 30.769 0.00 0.00 0.00 2.40
3020 11637 6.071108 CCTGAACTTGACTCCTCTCATTAGAA 60.071 42.308 0.00 0.00 0.00 2.10
3045 11778 5.350640 GGTTCATAGGGTTCTCACGTTTTAG 59.649 44.000 0.00 0.00 0.00 1.85
3046 11779 5.733620 TCATAGGGTTCTCACGTTTTAGT 57.266 39.130 0.00 0.00 0.00 2.24
3442 12273 7.430441 TCTCATGTGGCATATCATCAATTTTG 58.570 34.615 0.00 0.00 0.00 2.44
3698 12544 7.490657 TCTTGTTTCTAGCTGGGACTTTATA 57.509 36.000 0.00 0.00 0.00 0.98
4088 12940 2.299326 AAGCAGGCAATTCCAGTTCT 57.701 45.000 0.00 0.00 37.29 3.01
4186 13409 7.775053 TTAGTTAATGCCCTTTCAGACAATT 57.225 32.000 0.00 0.00 0.00 2.32
4295 13518 8.710835 TTGAGTACCCATTTTCTTTTTCAAAC 57.289 30.769 0.00 0.00 0.00 2.93
4299 13522 5.356426 ACCCATTTTCTTTTTCAAACGGAG 58.644 37.500 0.00 0.00 0.00 4.63
4440 13663 5.104527 TGGATGATCGAGATACTTTTGGGTT 60.105 40.000 0.00 0.00 0.00 4.11
4532 13773 7.906327 ACACACAAATAAGAATTAAATGGCCT 58.094 30.769 3.32 0.00 32.17 5.19
4546 13797 1.307084 GGCCTACCCTGTCCCTTCT 60.307 63.158 0.00 0.00 0.00 2.85
4552 13805 4.586884 CCTACCCTGTCCCTTCTAAAAAC 58.413 47.826 0.00 0.00 0.00 2.43
4614 14074 1.302033 CTGTTCTCGCTTGCCCACT 60.302 57.895 0.00 0.00 0.00 4.00
4615 14075 1.572085 CTGTTCTCGCTTGCCCACTG 61.572 60.000 0.00 0.00 0.00 3.66
4696 14192 3.688694 AAGGGCTGTCACGTGTTTATA 57.311 42.857 16.51 0.00 0.00 0.98
4697 14193 3.906720 AGGGCTGTCACGTGTTTATAT 57.093 42.857 16.51 0.00 0.00 0.86
4742 14242 6.924612 TGAATTTGACCACACTTTGATTCATG 59.075 34.615 0.00 0.00 30.04 3.07
4792 14292 8.747538 ACCTTCTGTTTCTGTTAATGTTTAGT 57.252 30.769 0.00 0.00 0.00 2.24
4793 14293 8.621286 ACCTTCTGTTTCTGTTAATGTTTAGTG 58.379 33.333 0.00 0.00 0.00 2.74
4794 14294 7.591426 CCTTCTGTTTCTGTTAATGTTTAGTGC 59.409 37.037 0.00 0.00 0.00 4.40
4992 14495 2.541588 CCGTGCCAGAAGAAAAGTTGTG 60.542 50.000 0.00 0.00 0.00 3.33
5015 14518 4.436852 GGATAACATACACACGCAGTTTGG 60.437 45.833 0.00 0.00 43.36 3.28
5222 14777 7.227156 CCCTGTACTGCTGGATTAATTATCTT 58.773 38.462 0.00 0.00 38.33 2.40
5728 15870 6.894339 TGCGATAATCCTGATCAGTAGTTA 57.106 37.500 21.11 15.57 0.00 2.24
5802 15944 1.202806 TGGGCATAGTCATTAGCCTGC 60.203 52.381 0.00 0.00 46.23 4.85
5803 15945 1.202806 GGGCATAGTCATTAGCCTGCA 60.203 52.381 0.00 0.00 46.23 4.41
5806 15948 3.144506 GCATAGTCATTAGCCTGCATGT 58.855 45.455 0.00 0.00 0.00 3.21
5808 15950 4.639334 CATAGTCATTAGCCTGCATGTCT 58.361 43.478 0.00 0.00 0.00 3.41
5809 15951 5.787380 CATAGTCATTAGCCTGCATGTCTA 58.213 41.667 0.00 0.00 0.00 2.59
5810 15952 4.760530 AGTCATTAGCCTGCATGTCTAA 57.239 40.909 0.00 7.79 0.00 2.10
5818 15960 4.256920 AGCCTGCATGTCTAAACAGTTAG 58.743 43.478 0.00 0.00 39.20 2.34
5819 15961 4.020218 AGCCTGCATGTCTAAACAGTTAGA 60.020 41.667 0.00 0.00 42.82 2.10
5820 15962 4.878397 GCCTGCATGTCTAAACAGTTAGAT 59.122 41.667 0.00 0.00 45.79 1.98
5821 15963 5.007136 GCCTGCATGTCTAAACAGTTAGATC 59.993 44.000 0.00 0.00 45.79 2.75
5822 15964 6.108687 CCTGCATGTCTAAACAGTTAGATCA 58.891 40.000 0.00 1.81 45.79 2.92
5823 15965 6.257411 CCTGCATGTCTAAACAGTTAGATCAG 59.743 42.308 0.00 5.68 45.79 2.90
5824 15966 6.701340 TGCATGTCTAAACAGTTAGATCAGT 58.299 36.000 0.00 0.00 45.79 3.41
5825 15967 6.591448 TGCATGTCTAAACAGTTAGATCAGTG 59.409 38.462 0.00 0.00 45.79 3.66
5826 15968 6.036517 GCATGTCTAAACAGTTAGATCAGTGG 59.963 42.308 0.00 0.00 45.79 4.00
5827 15969 5.479306 TGTCTAAACAGTTAGATCAGTGGC 58.521 41.667 0.00 0.00 45.79 5.01
5828 15970 4.563184 GTCTAAACAGTTAGATCAGTGGCG 59.437 45.833 0.00 0.00 45.79 5.69
5829 15971 3.678056 AAACAGTTAGATCAGTGGCGA 57.322 42.857 0.00 0.00 0.00 5.54
5830 15972 3.678056 AACAGTTAGATCAGTGGCGAA 57.322 42.857 0.00 0.00 0.00 4.70
5831 15973 3.238108 ACAGTTAGATCAGTGGCGAAG 57.762 47.619 0.00 0.00 0.00 3.79
5832 15974 8.086568 CTAAACAGTTAGATCAGTGGCGAAGC 62.087 46.154 0.00 0.00 46.38 3.86
5844 15986 4.779475 CGAAGCCACACTTGACCT 57.221 55.556 0.00 0.00 39.29 3.85
5845 15987 2.238353 CGAAGCCACACTTGACCTG 58.762 57.895 0.00 0.00 39.29 4.00
5846 15988 0.532862 CGAAGCCACACTTGACCTGT 60.533 55.000 0.00 0.00 39.29 4.00
5847 15989 1.680338 GAAGCCACACTTGACCTGTT 58.320 50.000 0.00 0.00 39.29 3.16
5848 15990 2.805295 CGAAGCCACACTTGACCTGTTA 60.805 50.000 0.00 0.00 39.29 2.41
5849 15991 2.550830 AGCCACACTTGACCTGTTAG 57.449 50.000 0.00 0.00 0.00 2.34
5850 15992 1.072331 AGCCACACTTGACCTGTTAGG 59.928 52.381 0.00 0.00 42.49 2.69
5851 15993 6.792422 GAAGCCACACTTGACCTGTTAGGT 62.792 50.000 0.00 0.00 45.77 3.08
5865 16007 5.547465 CCTGTTAGGTCAATTGACTACACA 58.453 41.667 31.81 27.05 44.20 3.72
5866 16008 5.639506 CCTGTTAGGTCAATTGACTACACAG 59.360 44.000 31.78 31.78 44.20 3.66
5867 16009 6.413783 TGTTAGGTCAATTGACTACACAGA 57.586 37.500 31.81 12.25 44.20 3.41
5868 16010 7.004555 TGTTAGGTCAATTGACTACACAGAT 57.995 36.000 31.81 13.91 44.20 2.90
5869 16011 7.450074 TGTTAGGTCAATTGACTACACAGATT 58.550 34.615 31.81 12.78 44.20 2.40
5870 16012 7.936847 TGTTAGGTCAATTGACTACACAGATTT 59.063 33.333 31.81 11.57 44.20 2.17
5871 16013 8.784043 GTTAGGTCAATTGACTACACAGATTTT 58.216 33.333 31.81 6.73 44.20 1.82
5872 16014 7.823745 AGGTCAATTGACTACACAGATTTTT 57.176 32.000 31.81 1.49 44.20 1.94
5873 16015 7.651808 AGGTCAATTGACTACACAGATTTTTG 58.348 34.615 31.81 0.00 44.20 2.44
5874 16016 7.285401 AGGTCAATTGACTACACAGATTTTTGT 59.715 33.333 31.81 0.24 44.20 2.83
5875 16017 8.564574 GGTCAATTGACTACACAGATTTTTGTA 58.435 33.333 31.81 0.00 44.20 2.41
5876 16018 9.944663 GTCAATTGACTACACAGATTTTTGTAA 57.055 29.630 27.66 0.00 41.65 2.41
5904 16046 8.498054 ACATCATACAACAAGTAGAAATCAGG 57.502 34.615 0.00 0.00 35.85 3.86
5905 16047 6.985188 TCATACAACAAGTAGAAATCAGGC 57.015 37.500 0.00 0.00 35.85 4.85
5906 16048 6.472016 TCATACAACAAGTAGAAATCAGGCA 58.528 36.000 0.00 0.00 35.85 4.75
5907 16049 6.939730 TCATACAACAAGTAGAAATCAGGCAA 59.060 34.615 0.00 0.00 35.85 4.52
5908 16050 5.438761 ACAACAAGTAGAAATCAGGCAAC 57.561 39.130 0.00 0.00 0.00 4.17
5909 16051 4.887071 ACAACAAGTAGAAATCAGGCAACA 59.113 37.500 0.00 0.00 41.41 3.33
5910 16052 5.359576 ACAACAAGTAGAAATCAGGCAACAA 59.640 36.000 0.00 0.00 41.41 2.83
5911 16053 6.127479 ACAACAAGTAGAAATCAGGCAACAAA 60.127 34.615 0.00 0.00 41.41 2.83
5912 16054 6.463995 ACAAGTAGAAATCAGGCAACAAAA 57.536 33.333 0.00 0.00 41.41 2.44
5913 16055 7.054491 ACAAGTAGAAATCAGGCAACAAAAT 57.946 32.000 0.00 0.00 41.41 1.82
5914 16056 7.147976 ACAAGTAGAAATCAGGCAACAAAATC 58.852 34.615 0.00 0.00 41.41 2.17
5915 16057 7.014615 ACAAGTAGAAATCAGGCAACAAAATCT 59.985 33.333 0.00 0.00 41.41 2.40
5916 16058 7.530426 AGTAGAAATCAGGCAACAAAATCTT 57.470 32.000 0.00 0.00 41.41 2.40
5917 16059 8.635765 AGTAGAAATCAGGCAACAAAATCTTA 57.364 30.769 0.00 0.00 41.41 2.10
5918 16060 9.247861 AGTAGAAATCAGGCAACAAAATCTTAT 57.752 29.630 0.00 0.00 41.41 1.73
5945 16087 9.677567 AAATTCATACATTTGACTACACAACAC 57.322 29.630 0.00 0.00 0.00 3.32
5946 16088 6.795098 TCATACATTTGACTACACAACACC 57.205 37.500 0.00 0.00 0.00 4.16
5947 16089 5.703592 TCATACATTTGACTACACAACACCC 59.296 40.000 0.00 0.00 0.00 4.61
5948 16090 3.892284 ACATTTGACTACACAACACCCA 58.108 40.909 0.00 0.00 0.00 4.51
5949 16091 4.274147 ACATTTGACTACACAACACCCAA 58.726 39.130 0.00 0.00 0.00 4.12
5950 16092 4.892934 ACATTTGACTACACAACACCCAAT 59.107 37.500 0.00 0.00 0.00 3.16
5951 16093 5.362430 ACATTTGACTACACAACACCCAATT 59.638 36.000 0.00 0.00 0.00 2.32
5952 16094 4.909696 TTGACTACACAACACCCAATTG 57.090 40.909 0.00 0.00 0.00 2.32
5953 16095 4.157849 TGACTACACAACACCCAATTGA 57.842 40.909 7.12 0.00 0.00 2.57
5954 16096 3.880490 TGACTACACAACACCCAATTGAC 59.120 43.478 7.12 0.00 0.00 3.18
5955 16097 4.134563 GACTACACAACACCCAATTGACT 58.865 43.478 7.12 0.00 0.00 3.41
5956 16098 5.163290 TGACTACACAACACCCAATTGACTA 60.163 40.000 7.12 0.00 0.00 2.59
5957 16099 5.061179 ACTACACAACACCCAATTGACTAC 58.939 41.667 7.12 0.00 0.00 2.73
5958 16100 3.892284 ACACAACACCCAATTGACTACA 58.108 40.909 7.12 0.00 0.00 2.74
5959 16101 3.630312 ACACAACACCCAATTGACTACAC 59.370 43.478 7.12 0.00 0.00 2.90
5960 16102 3.629855 CACAACACCCAATTGACTACACA 59.370 43.478 7.12 0.00 0.00 3.72
5961 16103 4.278170 CACAACACCCAATTGACTACACAT 59.722 41.667 7.12 0.00 0.00 3.21
5962 16104 4.278170 ACAACACCCAATTGACTACACATG 59.722 41.667 7.12 0.00 0.00 3.21
5963 16105 4.365514 ACACCCAATTGACTACACATGA 57.634 40.909 7.12 0.00 0.00 3.07
5964 16106 4.922206 ACACCCAATTGACTACACATGAT 58.078 39.130 7.12 0.00 0.00 2.45
5965 16107 6.061022 ACACCCAATTGACTACACATGATA 57.939 37.500 7.12 0.00 0.00 2.15
5966 16108 6.662755 ACACCCAATTGACTACACATGATAT 58.337 36.000 7.12 0.00 0.00 1.63
5967 16109 6.543465 ACACCCAATTGACTACACATGATATG 59.457 38.462 7.12 0.00 0.00 1.78
5968 16110 6.767423 CACCCAATTGACTACACATGATATGA 59.233 38.462 7.12 0.00 0.00 2.15
5969 16111 7.446319 CACCCAATTGACTACACATGATATGAT 59.554 37.037 7.12 0.00 0.00 2.45
5971 16113 8.509690 CCCAATTGACTACACATGATATGATTC 58.490 37.037 7.12 0.00 0.00 2.52
5973 16115 8.768019 CAATTGACTACACATGATATGATTCGT 58.232 33.333 0.00 0.00 0.00 3.85
5978 16120 3.561310 ACACATGATATGATTCGTGGCAC 59.439 43.478 7.79 7.79 37.02 5.01
5980 16122 1.864565 TGATATGATTCGTGGCACCG 58.135 50.000 12.86 7.59 0.00 4.94
6002 16144 4.443621 GCCACTGAGTTAGATAAAGACCC 58.556 47.826 0.00 0.00 0.00 4.46
6053 16198 4.397417 GTGCATCAGATAGGTGCTTCTTTT 59.603 41.667 1.80 0.00 39.52 2.27
6054 16199 5.012239 TGCATCAGATAGGTGCTTCTTTTT 58.988 37.500 1.80 0.00 39.52 1.94
6055 16200 6.094048 GTGCATCAGATAGGTGCTTCTTTTTA 59.906 38.462 1.80 0.00 39.52 1.52
6056 16201 6.830324 TGCATCAGATAGGTGCTTCTTTTTAT 59.170 34.615 1.80 0.00 39.52 1.40
6204 16400 5.420421 TGCTTCAGTCTAATCTTAGCTGAGT 59.580 40.000 5.29 0.00 40.94 3.41
6205 16401 6.071108 TGCTTCAGTCTAATCTTAGCTGAGTT 60.071 38.462 5.29 2.48 40.94 3.01
6206 16402 6.816140 GCTTCAGTCTAATCTTAGCTGAGTTT 59.184 38.462 5.29 6.24 40.94 2.66
6207 16403 7.333174 GCTTCAGTCTAATCTTAGCTGAGTTTT 59.667 37.037 5.29 3.91 40.94 2.43
6431 16661 1.345415 CCTTTGCAGAAATGTGGGCTT 59.655 47.619 0.00 0.00 0.00 4.35
6462 16692 9.207868 AGCTAATATATCTAGTTGAAGGGGATC 57.792 37.037 0.00 0.00 0.00 3.36
6473 16703 2.224769 TGAAGGGGATCCAAACACTGTC 60.225 50.000 15.23 0.00 34.83 3.51
6503 16733 2.985139 AGAGAGCGTTAAAACAGCGTAC 59.015 45.455 0.00 0.00 34.98 3.67
6508 16738 2.152868 GCGTTAAAACAGCGTACGTACA 59.847 45.455 24.50 0.21 34.89 2.90
6537 16767 3.924507 GCCTGGGCGATCATGTTT 58.075 55.556 0.00 0.00 0.00 2.83
6539 16769 1.388547 GCCTGGGCGATCATGTTTAA 58.611 50.000 0.00 0.00 0.00 1.52
6548 16778 4.819630 GGCGATCATGTTTAACCCTGAATA 59.180 41.667 0.00 0.00 0.00 1.75
6573 16804 7.927048 AGCAGTACTTTTTCTCGTTGTTTAAT 58.073 30.769 0.00 0.00 0.00 1.40
6606 16841 1.128692 CGTTCCTTTCGTTCAGGATGC 59.871 52.381 1.61 0.00 40.31 3.91
6629 16867 5.437060 CCAGTTGTATGCCCTATTAACTGT 58.563 41.667 12.25 0.00 39.08 3.55
6789 17029 1.117749 TCTCTGCTGGTGCTGACACT 61.118 55.000 0.00 0.00 46.57 3.55
6830 17070 6.431234 ACCTATGATGAGTTTGTGAAAAGGTC 59.569 38.462 0.00 0.00 0.00 3.85
6934 17175 2.423577 CAAAGTTTGGAGGGTAGTCCG 58.576 52.381 7.78 0.00 39.81 4.79
6991 17232 2.129555 ATCAGGTGCCACAGGTGACC 62.130 60.000 0.00 0.00 0.00 4.02
7031 17272 1.911357 TGACGAGTCTCTACCCCACTA 59.089 52.381 4.78 0.00 0.00 2.74
7057 17298 2.690778 GCTTGCCAGGGCGTACAAG 61.691 63.158 14.39 14.39 45.51 3.16
7094 17390 7.273815 GTCGTCTTCTCCTTTCAACTTATACAG 59.726 40.741 0.00 0.00 0.00 2.74
7126 17424 4.096833 TCATGCAAAGCACTTGATCATACC 59.903 41.667 0.00 0.00 43.04 2.73
7127 17425 3.689347 TGCAAAGCACTTGATCATACCT 58.311 40.909 0.00 0.00 37.17 3.08
7159 17489 3.244284 ACCAAATGTGAGCAATGCATGTT 60.244 39.130 8.35 0.00 0.00 2.71
7169 17501 6.443792 TGAGCAATGCATGTTCATATCATTC 58.556 36.000 8.35 0.00 43.36 2.67
7176 17509 4.464112 CATGTTCATATCATTCGCTGCTG 58.536 43.478 0.00 0.00 0.00 4.41
7186 17519 0.098905 TTCGCTGCTGCTCGTACTAG 59.901 55.000 14.03 0.00 36.97 2.57
7188 17521 0.656259 CGCTGCTGCTCGTACTAGTA 59.344 55.000 14.03 0.00 36.97 1.82
7201 17534 7.224362 TGCTCGTACTAGTAATGTCTCTCTTAC 59.776 40.741 3.61 0.00 0.00 2.34
7261 17597 5.319043 TCCTTGTAACTTTGAAGGATGGT 57.681 39.130 0.00 0.00 40.30 3.55
7276 17612 1.920734 ATGGTGATAGGCGTGCCCAA 61.921 55.000 7.39 0.00 36.58 4.12
7351 17687 3.204526 CATCTTCAAGCTCATCTGGGTC 58.795 50.000 0.00 0.00 0.00 4.46
7355 17691 1.833630 TCAAGCTCATCTGGGTCGAAT 59.166 47.619 0.00 0.00 0.00 3.34
7374 17710 4.039730 CGAATGATGAACTCCTCCCTGTAT 59.960 45.833 0.00 0.00 0.00 2.29
7383 17721 4.052922 ACTCCTCCCTGTATGTACCTAGA 58.947 47.826 0.00 0.00 0.00 2.43
7390 17728 8.168725 CCTCCCTGTATGTACCTAGATAGTTTA 58.831 40.741 0.00 0.00 0.00 2.01
7431 17769 0.531090 CGGTCTTTTGGTCACCGTCA 60.531 55.000 1.50 0.00 46.58 4.35
7438 17776 2.385013 TTGGTCACCGTCATGATGAG 57.615 50.000 16.77 8.91 0.00 2.90
7483 17822 4.035675 CAGGAGTGACTTTCAAGTTTGGAC 59.964 45.833 0.00 0.00 39.88 4.02
7510 17851 1.506025 AGCAGGAGGGATCCTTTCTC 58.494 55.000 12.58 9.75 38.22 2.87
7530 17871 2.912624 GCTGTGTGCCTGTTGCCTC 61.913 63.158 0.00 0.00 40.16 4.70
7545 17886 2.566913 TGCCTCGCAAAACTGAAAGTA 58.433 42.857 0.00 0.00 41.17 2.24
7607 17955 1.002624 TAGCCTTGCTCCCCGTTTG 60.003 57.895 0.00 0.00 40.44 2.93
7617 17965 2.941064 GCTCCCCGTTTGAATTACTACC 59.059 50.000 0.00 0.00 0.00 3.18
7643 18094 7.712639 CAGTAGTATGTTGTAGAATTCCATGCT 59.287 37.037 13.64 13.64 33.85 3.79
7657 18112 2.953648 TCCATGCTGCACATTATGGAAG 59.046 45.455 17.13 0.00 44.38 3.46
7659 18114 1.836802 TGCTGCACATTATGGAAGCA 58.163 45.000 10.82 10.82 32.97 3.91
7661 18116 2.761767 TGCTGCACATTATGGAAGCATT 59.238 40.909 10.82 0.00 34.35 3.56
7670 18125 4.981806 TTATGGAAGCATTGTGTTAGCC 57.018 40.909 0.00 0.00 0.00 3.93
7753 18217 1.716050 CGTGTTGTCTCGTGTCATCTG 59.284 52.381 0.00 0.00 0.00 2.90
7768 18236 1.754803 CATCTGGTTGCTTGCATGGAT 59.245 47.619 1.34 0.00 0.00 3.41
7789 18257 6.946229 GATGCAATCAAATAAGATGGATGC 57.054 37.500 0.00 0.00 44.70 3.91
7790 18258 5.855740 TGCAATCAAATAAGATGGATGCA 57.144 34.783 0.00 0.00 37.40 3.96
7791 18259 6.223351 TGCAATCAAATAAGATGGATGCAA 57.777 33.333 0.00 0.00 37.07 4.08
7792 18260 6.822442 TGCAATCAAATAAGATGGATGCAAT 58.178 32.000 0.00 0.00 37.07 3.56
7793 18261 7.953752 TGCAATCAAATAAGATGGATGCAATA 58.046 30.769 0.00 0.00 37.07 1.90
7794 18262 8.085909 TGCAATCAAATAAGATGGATGCAATAG 58.914 33.333 0.00 0.00 37.07 1.73
7795 18263 8.301720 GCAATCAAATAAGATGGATGCAATAGA 58.698 33.333 0.00 0.00 33.16 1.98
7806 18274 9.393512 AGATGGATGCAATAGAAATAATCTAGC 57.606 33.333 0.00 0.00 43.75 3.42
7807 18275 7.928307 TGGATGCAATAGAAATAATCTAGCC 57.072 36.000 0.00 0.00 43.75 3.93
7808 18276 6.595326 TGGATGCAATAGAAATAATCTAGCCG 59.405 38.462 0.00 0.00 43.75 5.52
7809 18277 6.818644 GGATGCAATAGAAATAATCTAGCCGA 59.181 38.462 0.00 0.00 43.75 5.54
7810 18278 7.497249 GGATGCAATAGAAATAATCTAGCCGAT 59.503 37.037 0.00 0.00 43.75 4.18
7811 18279 7.601073 TGCAATAGAAATAATCTAGCCGATG 57.399 36.000 0.00 0.00 43.75 3.84
7812 18280 7.386059 TGCAATAGAAATAATCTAGCCGATGA 58.614 34.615 0.00 0.00 43.75 2.92
7813 18281 7.331934 TGCAATAGAAATAATCTAGCCGATGAC 59.668 37.037 0.00 0.00 43.75 3.06
7814 18282 7.331934 GCAATAGAAATAATCTAGCCGATGACA 59.668 37.037 0.00 0.00 43.75 3.58
7815 18283 9.376075 CAATAGAAATAATCTAGCCGATGACAT 57.624 33.333 0.00 0.00 43.75 3.06
7816 18284 8.939201 ATAGAAATAATCTAGCCGATGACATG 57.061 34.615 0.00 0.00 43.75 3.21
7817 18285 6.169094 AGAAATAATCTAGCCGATGACATGG 58.831 40.000 0.00 0.00 36.32 3.66
7818 18286 5.489792 AATAATCTAGCCGATGACATGGT 57.510 39.130 0.00 0.00 31.20 3.55
7819 18287 6.605471 AATAATCTAGCCGATGACATGGTA 57.395 37.500 0.00 0.00 31.20 3.25
7820 18288 3.944055 ATCTAGCCGATGACATGGTAC 57.056 47.619 0.00 0.00 0.00 3.34
7821 18289 1.607148 TCTAGCCGATGACATGGTACG 59.393 52.381 0.00 0.00 0.00 3.67
7822 18290 1.607148 CTAGCCGATGACATGGTACGA 59.393 52.381 0.00 0.00 0.00 3.43
7823 18291 1.040646 AGCCGATGACATGGTACGAT 58.959 50.000 0.00 0.00 0.00 3.73
7824 18292 1.412710 AGCCGATGACATGGTACGATT 59.587 47.619 0.00 0.00 0.00 3.34
7825 18293 2.158957 AGCCGATGACATGGTACGATTT 60.159 45.455 0.00 0.00 0.00 2.17
7826 18294 2.032894 GCCGATGACATGGTACGATTTG 60.033 50.000 0.00 0.00 0.00 2.32
7827 18295 3.194861 CCGATGACATGGTACGATTTGT 58.805 45.455 0.00 0.00 0.00 2.83
7828 18296 3.001228 CCGATGACATGGTACGATTTGTG 59.999 47.826 0.00 0.00 0.00 3.33
7829 18297 3.544048 CGATGACATGGTACGATTTGTGC 60.544 47.826 0.00 0.00 0.00 4.57
7830 18298 2.772287 TGACATGGTACGATTTGTGCA 58.228 42.857 0.00 0.00 34.44 4.57
7831 18299 3.142174 TGACATGGTACGATTTGTGCAA 58.858 40.909 0.00 0.00 34.44 4.08
7832 18300 3.188254 TGACATGGTACGATTTGTGCAAG 59.812 43.478 0.00 0.00 34.44 4.01
7833 18301 3.407698 ACATGGTACGATTTGTGCAAGA 58.592 40.909 0.00 0.00 34.44 3.02
7834 18302 3.818210 ACATGGTACGATTTGTGCAAGAA 59.182 39.130 0.00 0.00 34.44 2.52
7835 18303 4.277174 ACATGGTACGATTTGTGCAAGAAA 59.723 37.500 0.00 0.00 34.44 2.52
7836 18304 4.902443 TGGTACGATTTGTGCAAGAAAA 57.098 36.364 0.00 0.00 30.79 2.29
7837 18305 5.250235 TGGTACGATTTGTGCAAGAAAAA 57.750 34.783 0.00 0.00 30.79 1.94
7861 18329 5.488262 AAATTCCAAGAAATCTGGGTTGG 57.512 39.130 3.78 0.00 38.28 3.77
7862 18330 2.603075 TCCAAGAAATCTGGGTTGGG 57.397 50.000 3.78 0.00 40.02 4.12
7863 18331 2.069775 TCCAAGAAATCTGGGTTGGGA 58.930 47.619 3.78 0.00 40.02 4.37
7864 18332 2.041620 TCCAAGAAATCTGGGTTGGGAG 59.958 50.000 3.78 0.00 40.02 4.30
7865 18333 2.041620 CCAAGAAATCTGGGTTGGGAGA 59.958 50.000 0.00 0.00 36.56 3.71
7866 18334 3.350833 CAAGAAATCTGGGTTGGGAGAG 58.649 50.000 0.00 0.00 0.00 3.20
7867 18335 1.918957 AGAAATCTGGGTTGGGAGAGG 59.081 52.381 0.00 0.00 0.00 3.69
7868 18336 1.916181 GAAATCTGGGTTGGGAGAGGA 59.084 52.381 0.00 0.00 0.00 3.71
7869 18337 2.059756 AATCTGGGTTGGGAGAGGAA 57.940 50.000 0.00 0.00 0.00 3.36
7870 18338 1.290134 ATCTGGGTTGGGAGAGGAAC 58.710 55.000 0.00 0.00 0.00 3.62
7871 18339 0.104672 TCTGGGTTGGGAGAGGAACA 60.105 55.000 0.00 0.00 0.00 3.18
7872 18340 0.326264 CTGGGTTGGGAGAGGAACAG 59.674 60.000 0.00 0.00 0.00 3.16
7873 18341 1.002011 GGGTTGGGAGAGGAACAGC 60.002 63.158 0.00 0.00 0.00 4.40
7874 18342 1.761174 GGTTGGGAGAGGAACAGCA 59.239 57.895 0.00 0.00 0.00 4.41
7875 18343 0.110486 GGTTGGGAGAGGAACAGCAA 59.890 55.000 0.00 0.00 0.00 3.91
7876 18344 1.528129 GTTGGGAGAGGAACAGCAAG 58.472 55.000 0.00 0.00 0.00 4.01
7877 18345 0.250901 TTGGGAGAGGAACAGCAAGC 60.251 55.000 0.00 0.00 0.00 4.01
7878 18346 1.377856 GGGAGAGGAACAGCAAGCC 60.378 63.158 0.00 0.00 0.00 4.35
7911 18379 1.153369 CTACCTGGGTCGCATGGTG 60.153 63.158 16.25 7.12 34.33 4.17
7919 18387 1.447643 GTCGCATGGTGGCCTCTAT 59.552 57.895 3.32 0.00 0.00 1.98
7922 18390 0.036952 CGCATGGTGGCCTCTATAGG 60.037 60.000 3.32 0.00 46.76 2.57
7933 18401 2.092375 GCCTCTATAGGTTGGCAGGTTT 60.092 50.000 19.97 0.00 45.64 3.27
7936 18404 4.567747 CCTCTATAGGTTGGCAGGTTTGTT 60.568 45.833 0.00 0.00 38.19 2.83
7937 18405 4.331968 TCTATAGGTTGGCAGGTTTGTTG 58.668 43.478 0.00 0.00 0.00 3.33
7938 18406 1.036707 TAGGTTGGCAGGTTTGTTGC 58.963 50.000 0.00 0.00 40.80 4.17
7939 18407 1.591327 GGTTGGCAGGTTTGTTGCG 60.591 57.895 0.00 0.00 42.42 4.85
7948 18417 3.564511 CAGGTTTGTTGCGGATTTACAG 58.435 45.455 0.00 0.00 0.00 2.74
7979 18448 3.449349 CCGCTACTGGAGGCCTAG 58.551 66.667 4.42 2.14 0.00 3.02
7980 18449 1.455959 CCGCTACTGGAGGCCTAGT 60.456 63.158 4.42 9.77 0.00 2.57
7981 18450 1.043673 CCGCTACTGGAGGCCTAGTT 61.044 60.000 13.42 0.00 0.00 2.24
7982 18451 1.688772 CGCTACTGGAGGCCTAGTTA 58.311 55.000 13.42 0.00 0.00 2.24
7983 18452 1.337387 CGCTACTGGAGGCCTAGTTAC 59.663 57.143 13.42 5.68 0.00 2.50
7984 18453 1.687660 GCTACTGGAGGCCTAGTTACC 59.312 57.143 13.42 6.99 0.00 2.85
7985 18454 1.955080 CTACTGGAGGCCTAGTTACCG 59.045 57.143 13.42 5.76 0.00 4.02
7986 18455 0.333993 ACTGGAGGCCTAGTTACCGA 59.666 55.000 4.42 0.00 0.00 4.69
7987 18456 1.272872 ACTGGAGGCCTAGTTACCGAA 60.273 52.381 4.42 0.00 0.00 4.30
7988 18457 1.409427 CTGGAGGCCTAGTTACCGAAG 59.591 57.143 4.42 0.00 0.00 3.79
7990 18459 2.317973 GGAGGCCTAGTTACCGAAGAT 58.682 52.381 4.42 0.00 0.00 2.40
7991 18460 2.699321 GGAGGCCTAGTTACCGAAGATT 59.301 50.000 4.42 0.00 0.00 2.40
7992 18461 3.893813 GGAGGCCTAGTTACCGAAGATTA 59.106 47.826 4.42 0.00 0.00 1.75
7994 18463 5.470047 AGGCCTAGTTACCGAAGATTATG 57.530 43.478 1.29 0.00 0.00 1.90
7995 18464 4.900054 AGGCCTAGTTACCGAAGATTATGT 59.100 41.667 1.29 0.00 0.00 2.29
7996 18465 5.010820 AGGCCTAGTTACCGAAGATTATGTC 59.989 44.000 1.29 0.00 0.00 3.06
7997 18466 5.221382 GGCCTAGTTACCGAAGATTATGTCA 60.221 44.000 0.00 0.00 0.00 3.58
8013 18584 6.862711 TTATGTCACGTATTTCCAACACAA 57.137 33.333 0.00 0.00 0.00 3.33
8022 18593 7.221838 CACGTATTTCCAACACAACAAGATTTT 59.778 33.333 0.00 0.00 0.00 1.82
8023 18594 7.221838 ACGTATTTCCAACACAACAAGATTTTG 59.778 33.333 0.00 0.00 40.24 2.44
8032 18603 4.026640 CACAACAAGATTTTGCCTTTGTCG 60.027 41.667 0.00 0.00 37.85 4.35
8042 18613 1.202879 TGCCTTTGTCGATTCCCAGTT 60.203 47.619 0.00 0.00 0.00 3.16
8043 18614 1.468914 GCCTTTGTCGATTCCCAGTTC 59.531 52.381 0.00 0.00 0.00 3.01
8044 18615 2.778299 CCTTTGTCGATTCCCAGTTCA 58.222 47.619 0.00 0.00 0.00 3.18
8046 18617 3.058224 CCTTTGTCGATTCCCAGTTCAAC 60.058 47.826 0.00 0.00 0.00 3.18
8047 18618 2.920724 TGTCGATTCCCAGTTCAACA 57.079 45.000 0.00 0.00 0.00 3.33
8048 18619 3.417069 TGTCGATTCCCAGTTCAACAT 57.583 42.857 0.00 0.00 0.00 2.71
8049 18620 3.073678 TGTCGATTCCCAGTTCAACATG 58.926 45.455 0.00 0.00 0.00 3.21
8050 18621 3.244387 TGTCGATTCCCAGTTCAACATGA 60.244 43.478 0.00 0.00 0.00 3.07
8053 18634 4.215399 TCGATTCCCAGTTCAACATGAAAC 59.785 41.667 0.00 0.85 38.22 2.78
8059 18640 2.226437 CAGTTCAACATGAAACTCCCGG 59.774 50.000 0.00 0.00 38.22 5.73
8070 18651 0.981943 AACTCCCGGTCCCTAGTTTG 59.018 55.000 0.00 0.00 0.00 2.93
8078 18659 2.682858 CGGTCCCTAGTTTGAATTCCCC 60.683 54.545 2.27 0.00 0.00 4.81
8214 18799 0.878961 AAGTGTTCCTTGGTCGCGTC 60.879 55.000 5.77 0.00 30.18 5.19
8215 18800 2.029964 TGTTCCTTGGTCGCGTCC 59.970 61.111 15.82 15.82 0.00 4.79
8245 18830 3.552890 GGTTCAAAGCCTGTTTGGTCATC 60.553 47.826 0.00 0.00 38.35 2.92
8253 18838 0.321564 TGTTTGGTCATCTCTGGGCG 60.322 55.000 0.00 0.00 0.00 6.13
8274 18859 1.424493 CTTTCTCTCCGTCGCCATGC 61.424 60.000 0.00 0.00 0.00 4.06
8296 18881 1.065600 GCCTACTCAGAGCAGAGCG 59.934 63.158 0.00 0.00 39.26 5.03
8299 18884 1.090728 CTACTCAGAGCAGAGCGTCA 58.909 55.000 0.00 0.00 39.26 4.35
8304 18889 1.066914 CAGAGCAGAGCGTCACTTTC 58.933 55.000 0.00 0.00 0.00 2.62
8315 18900 3.993081 AGCGTCACTTTCTTCTCATTCAG 59.007 43.478 0.00 0.00 0.00 3.02
8316 18901 3.124297 GCGTCACTTTCTTCTCATTCAGG 59.876 47.826 0.00 0.00 0.00 3.86
8317 18902 3.124297 CGTCACTTTCTTCTCATTCAGGC 59.876 47.826 0.00 0.00 0.00 4.85
8318 18903 3.438434 GTCACTTTCTTCTCATTCAGGCC 59.562 47.826 0.00 0.00 0.00 5.19
8319 18904 3.072915 TCACTTTCTTCTCATTCAGGCCA 59.927 43.478 5.01 0.00 0.00 5.36
8320 18905 3.822735 CACTTTCTTCTCATTCAGGCCAA 59.177 43.478 5.01 0.00 0.00 4.52
8321 18906 3.823304 ACTTTCTTCTCATTCAGGCCAAC 59.177 43.478 5.01 0.00 0.00 3.77
8322 18907 3.795688 TTCTTCTCATTCAGGCCAACT 57.204 42.857 5.01 0.00 0.00 3.16
8323 18908 3.795688 TCTTCTCATTCAGGCCAACTT 57.204 42.857 5.01 0.00 0.00 2.66
8324 18909 3.679389 TCTTCTCATTCAGGCCAACTTC 58.321 45.455 5.01 0.00 0.00 3.01
8325 18910 3.072915 TCTTCTCATTCAGGCCAACTTCA 59.927 43.478 5.01 0.00 0.00 3.02
8326 18911 2.783135 TCTCATTCAGGCCAACTTCAC 58.217 47.619 5.01 0.00 0.00 3.18
8327 18912 2.106338 TCTCATTCAGGCCAACTTCACA 59.894 45.455 5.01 0.00 0.00 3.58
8328 18913 2.486982 CTCATTCAGGCCAACTTCACAG 59.513 50.000 5.01 0.00 0.00 3.66
8329 18914 1.068055 CATTCAGGCCAACTTCACAGC 60.068 52.381 5.01 0.00 0.00 4.40
8330 18915 1.165907 TTCAGGCCAACTTCACAGCG 61.166 55.000 5.01 0.00 0.00 5.18
8331 18916 2.980233 AGGCCAACTTCACAGCGC 60.980 61.111 5.01 0.00 0.00 5.92
8332 18917 4.389576 GGCCAACTTCACAGCGCG 62.390 66.667 0.00 0.00 0.00 6.86
8333 18918 3.345808 GCCAACTTCACAGCGCGA 61.346 61.111 12.10 0.00 0.00 5.87
8334 18919 2.551270 CCAACTTCACAGCGCGAC 59.449 61.111 12.10 0.04 0.00 5.19
8335 18920 2.551270 CAACTTCACAGCGCGACC 59.449 61.111 12.10 0.00 0.00 4.79
8336 18921 2.665185 AACTTCACAGCGCGACCC 60.665 61.111 12.10 0.00 0.00 4.46
8337 18922 3.165160 AACTTCACAGCGCGACCCT 62.165 57.895 12.10 0.00 0.00 4.34
8338 18923 1.812686 AACTTCACAGCGCGACCCTA 61.813 55.000 12.10 0.00 0.00 3.53
8339 18924 1.141881 CTTCACAGCGCGACCCTAT 59.858 57.895 12.10 0.00 0.00 2.57
8340 18925 0.872021 CTTCACAGCGCGACCCTATC 60.872 60.000 12.10 0.00 0.00 2.08
8341 18926 2.279517 CACAGCGCGACCCTATCC 60.280 66.667 12.10 0.00 0.00 2.59
8342 18927 2.442272 ACAGCGCGACCCTATCCT 60.442 61.111 12.10 0.00 0.00 3.24
8343 18928 2.058595 ACAGCGCGACCCTATCCTT 61.059 57.895 12.10 0.00 0.00 3.36
8344 18929 1.144057 CAGCGCGACCCTATCCTTT 59.856 57.895 12.10 0.00 0.00 3.11
8345 18930 0.876342 CAGCGCGACCCTATCCTTTC 60.876 60.000 12.10 0.00 0.00 2.62
8346 18931 1.594564 GCGCGACCCTATCCTTTCC 60.595 63.158 12.10 0.00 0.00 3.13
8347 18932 1.299926 CGCGACCCTATCCTTTCCG 60.300 63.158 0.00 0.00 0.00 4.30
8348 18933 1.821258 GCGACCCTATCCTTTCCGT 59.179 57.895 0.00 0.00 0.00 4.69
8349 18934 0.249363 GCGACCCTATCCTTTCCGTC 60.249 60.000 0.00 0.00 0.00 4.79
8350 18935 0.388294 CGACCCTATCCTTTCCGTCC 59.612 60.000 0.00 0.00 0.00 4.79
8351 18936 0.757512 GACCCTATCCTTTCCGTCCC 59.242 60.000 0.00 0.00 0.00 4.46
8352 18937 0.693430 ACCCTATCCTTTCCGTCCCC 60.693 60.000 0.00 0.00 0.00 4.81
8353 18938 1.746517 CCTATCCTTTCCGTCCCCG 59.253 63.158 0.00 0.00 0.00 5.73
8354 18939 1.047034 CCTATCCTTTCCGTCCCCGT 61.047 60.000 0.00 0.00 0.00 5.28
8355 18940 0.388294 CTATCCTTTCCGTCCCCGTC 59.612 60.000 0.00 0.00 0.00 4.79
8356 18941 1.044790 TATCCTTTCCGTCCCCGTCC 61.045 60.000 0.00 0.00 0.00 4.79
8357 18942 4.446413 CCTTTCCGTCCCCGTCCG 62.446 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.783833 TGTTCTGGAATTTGAAATTTTGTTCA 57.216 26.923 4.46 0.00 35.72 3.18
124 144 5.766150 AAGCTTTGGGGTTTTAAAATTGC 57.234 34.783 3.52 2.20 30.77 3.56
181 201 9.914923 AAAAAGTTTGAAGTTATCGAAAAATGC 57.085 25.926 0.00 0.00 33.14 3.56
290 319 6.088016 TGTTCTGCATTTGAAAAGCTGTAT 57.912 33.333 6.69 0.00 0.00 2.29
320 349 7.376866 CGGGATTTTCAAATTGTATCAGATTCG 59.623 37.037 0.00 0.00 0.00 3.34
410 442 8.736751 ACAAATTCGTGTTATACCAATGTTTC 57.263 30.769 0.00 0.00 0.00 2.78
575 1731 5.508153 GGCTTCTTTTGTTCCTTCTTCTTCC 60.508 44.000 0.00 0.00 0.00 3.46
576 1732 5.524284 GGCTTCTTTTGTTCCTTCTTCTTC 58.476 41.667 0.00 0.00 0.00 2.87
582 1757 1.954382 ACCGGCTTCTTTTGTTCCTTC 59.046 47.619 0.00 0.00 0.00 3.46
586 1767 2.287608 CCTGAACCGGCTTCTTTTGTTC 60.288 50.000 0.00 0.00 36.67 3.18
588 1769 1.133915 TCCTGAACCGGCTTCTTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
589 1770 1.604604 TCCTGAACCGGCTTCTTTTG 58.395 50.000 0.00 0.00 0.00 2.44
623 1829 0.953960 CGGTTTTCTCGGTTCTGGGG 60.954 60.000 0.00 0.00 0.00 4.96
691 1897 4.021456 CGGCCTATCTACACATACATGGAA 60.021 45.833 0.00 0.00 0.00 3.53
692 1898 3.509967 CGGCCTATCTACACATACATGGA 59.490 47.826 0.00 0.00 0.00 3.41
693 1899 3.368427 CCGGCCTATCTACACATACATGG 60.368 52.174 0.00 0.00 0.00 3.66
694 1900 3.849911 CCGGCCTATCTACACATACATG 58.150 50.000 0.00 0.00 0.00 3.21
695 1901 2.233922 GCCGGCCTATCTACACATACAT 59.766 50.000 18.11 0.00 0.00 2.29
698 1904 1.263356 GGCCGGCCTATCTACACATA 58.737 55.000 38.76 0.00 0.00 2.29
709 1915 2.123726 GATTGATTGGGCCGGCCT 60.124 61.111 42.70 26.22 36.10 5.19
737 1943 1.004292 GTCAAAGTGTCGACCAAACGG 60.004 52.381 14.12 0.00 0.00 4.44
805 2011 1.292992 GGGCACGATTAGTAAACGGG 58.707 55.000 15.76 13.13 0.00 5.28
1068 2345 0.459237 AGCGGTGCTTCTCGAAGATG 60.459 55.000 10.68 0.00 40.79 2.90
1209 2486 0.033601 ATGGGGGAAATGCGCACTTA 60.034 50.000 14.90 0.00 33.24 2.24
1315 2599 3.038417 GCACAGAAGCGCGACACT 61.038 61.111 12.10 1.18 0.00 3.55
1316 2600 4.077188 GGCACAGAAGCGCGACAC 62.077 66.667 12.10 0.00 34.64 3.67
1432 2716 3.445096 CCAAACAAAGCTAAGATCCCAGG 59.555 47.826 0.00 0.00 0.00 4.45
1445 2729 4.739716 GCACACTACATCAACCAAACAAAG 59.260 41.667 0.00 0.00 0.00 2.77
1472 4567 3.682592 AGTAAAAATCCCCTAAGGCCC 57.317 47.619 0.00 0.00 34.51 5.80
1521 4617 3.492421 AATTCCACAGCTATGCAAACG 57.508 42.857 0.00 0.00 0.00 3.60
1619 4959 2.371841 AGATATAAAGCGGTCATGGCCA 59.628 45.455 18.31 8.56 0.00 5.36
1635 4975 7.334421 GTGGTATGAATACATTTCGCCAGATAT 59.666 37.037 3.04 0.00 37.87 1.63
1658 5001 1.883275 TGAATGGTGGCTTAAACGTGG 59.117 47.619 0.00 0.00 0.00 4.94
1671 5018 2.302733 GGCAAATCCCAAGTTGAATGGT 59.697 45.455 3.87 0.00 36.14 3.55
1700 5047 8.368668 ACTGTTATAGCACTTCATAGGTTATCC 58.631 37.037 0.00 0.00 0.00 2.59
1710 5057 6.097696 TGCTGGTATACTGTTATAGCACTTCA 59.902 38.462 2.25 0.00 41.61 3.02
1756 5122 3.027974 ACGAAAGGTGCAGAGTTCTAC 57.972 47.619 0.00 0.00 0.00 2.59
1802 5176 9.698309 ACATTAATCTAGTATGTGATTTCCTCG 57.302 33.333 0.00 0.00 35.01 4.63
1904 8466 6.546395 AGCAACAACGATGATCAAACTAATC 58.454 36.000 0.00 0.00 0.00 1.75
1919 8481 1.597663 AGAACCGAAGAAGCAACAACG 59.402 47.619 0.00 0.00 0.00 4.10
2038 8600 1.136500 CTAGTACCCGTTTCTCCTGGC 59.864 57.143 0.00 0.00 0.00 4.85
2099 8661 8.696043 TGATGATGGAAAAGAAAAGAAAGAGA 57.304 30.769 0.00 0.00 0.00 3.10
2373 8987 8.957466 GCATATTCAGTTAACTTTTCCTACCTT 58.043 33.333 5.07 0.00 0.00 3.50
2413 9043 3.347216 CCTAGGGGACAAATCAACTGTG 58.653 50.000 0.00 0.00 33.58 3.66
2597 11167 0.256752 TGGGCTGCTCATAGTGCAAT 59.743 50.000 0.00 0.00 40.13 3.56
2601 11171 1.825090 TGTTTGGGCTGCTCATAGTG 58.175 50.000 1.56 0.00 0.00 2.74
2703 11279 4.097286 GCAGGGTTACTCTTTTTCACAACA 59.903 41.667 0.00 0.00 0.00 3.33
3020 11637 2.537143 ACGTGAGAACCCTATGAACCT 58.463 47.619 0.00 0.00 0.00 3.50
3442 12273 5.065914 TGCCTGCTTCTATTCCATCAATAC 58.934 41.667 0.00 0.00 0.00 1.89
4018 12864 5.975693 AAAATTCTCGGAACCTGCAATTA 57.024 34.783 0.00 0.00 0.00 1.40
4088 12940 6.294508 GCAAAGAAAGCATACTGGTAGGAAAA 60.295 38.462 0.00 0.00 0.00 2.29
4186 13409 2.100916 GAGGAGAATTAGTAGCACGGCA 59.899 50.000 0.00 0.00 0.00 5.69
4295 13518 6.422776 AAGAAAGTATTGTGTTATGCTCCG 57.577 37.500 0.00 0.00 0.00 4.63
4299 13522 8.986477 ATGGAAAAGAAAGTATTGTGTTATGC 57.014 30.769 0.00 0.00 0.00 3.14
4390 13613 5.939764 TCAGCACCACTTCATAAGTATCT 57.060 39.130 0.00 0.00 40.46 1.98
4440 13663 9.147732 ACTCATGAGTAAGGTATGATCATACAA 57.852 33.333 35.28 22.55 41.42 2.41
4508 13731 9.301153 GTAGGCCATTTAATTCTTATTTGTGTG 57.699 33.333 5.01 0.00 0.00 3.82
4510 13746 7.926018 GGGTAGGCCATTTAATTCTTATTTGTG 59.074 37.037 5.01 0.00 36.17 3.33
4529 13769 1.875488 TTAGAAGGGACAGGGTAGGC 58.125 55.000 0.00 0.00 0.00 3.93
4532 13773 4.245308 AGGTTTTTAGAAGGGACAGGGTA 58.755 43.478 0.00 0.00 0.00 3.69
4546 13797 6.551601 TGCTTACCATCCTGAAAAGGTTTTTA 59.448 34.615 0.00 0.00 35.62 1.52
4552 13805 3.193479 GGTTGCTTACCATCCTGAAAAGG 59.807 47.826 4.00 0.00 46.92 3.11
4614 14074 1.074775 AGGAATGCCCTTGCGAACA 59.925 52.632 0.00 0.00 44.85 3.18
4615 14075 4.002797 AGGAATGCCCTTGCGAAC 57.997 55.556 0.00 0.00 44.85 3.95
4675 14171 3.688694 ATAAACACGTGACAGCCCTTA 57.311 42.857 25.01 7.87 0.00 2.69
4696 14192 6.299805 TCACAATTCCAGCAGTAAGTAGAT 57.700 37.500 0.00 0.00 0.00 1.98
4697 14193 5.738619 TCACAATTCCAGCAGTAAGTAGA 57.261 39.130 0.00 0.00 0.00 2.59
4992 14495 4.436852 CCAAACTGCGTGTGTATGTTATCC 60.437 45.833 0.00 0.00 0.00 2.59
5699 15841 6.763355 ACTGATCAGGATTATCGCATAAAGT 58.237 36.000 26.08 0.00 0.00 2.66
5703 15845 7.468141 AACTACTGATCAGGATTATCGCATA 57.532 36.000 26.08 5.10 0.00 3.14
5728 15870 5.893897 AAAACAATGTTTTGTGTTGCCAT 57.106 30.435 21.61 0.00 45.30 4.40
5802 15944 6.036517 GCCACTGATCTAACTGTTTAGACATG 59.963 42.308 0.00 0.00 45.26 3.21
5803 15945 6.109359 GCCACTGATCTAACTGTTTAGACAT 58.891 40.000 0.00 0.00 45.26 3.06
5806 15948 4.461431 TCGCCACTGATCTAACTGTTTAGA 59.539 41.667 0.00 0.59 46.26 2.10
5808 15950 4.794278 TCGCCACTGATCTAACTGTTTA 57.206 40.909 0.00 0.00 0.00 2.01
5809 15951 3.678056 TCGCCACTGATCTAACTGTTT 57.322 42.857 0.00 0.00 0.00 2.83
5810 15952 3.589988 CTTCGCCACTGATCTAACTGTT 58.410 45.455 0.00 0.00 0.00 3.16
5826 15968 1.598130 AGGTCAAGTGTGGCTTCGC 60.598 57.895 0.00 0.00 34.69 4.70
5827 15969 0.532862 ACAGGTCAAGTGTGGCTTCG 60.533 55.000 0.00 0.00 34.69 3.79
5828 15970 1.680338 AACAGGTCAAGTGTGGCTTC 58.320 50.000 0.00 0.00 34.69 3.86
5829 15971 2.487265 CCTAACAGGTCAAGTGTGGCTT 60.487 50.000 0.00 0.00 38.08 4.35
5830 15972 1.072331 CCTAACAGGTCAAGTGTGGCT 59.928 52.381 0.00 0.00 0.00 4.75
5831 15973 1.523758 CCTAACAGGTCAAGTGTGGC 58.476 55.000 0.00 0.00 0.00 5.01
5842 15984 5.547465 TGTGTAGTCAATTGACCTAACAGG 58.453 41.667 30.34 0.00 45.85 4.00
5843 15985 6.455647 TCTGTGTAGTCAATTGACCTAACAG 58.544 40.000 33.48 33.48 45.85 3.16
5844 15986 6.413783 TCTGTGTAGTCAATTGACCTAACA 57.586 37.500 30.34 26.83 45.85 2.41
5845 15987 7.907214 AATCTGTGTAGTCAATTGACCTAAC 57.093 36.000 30.34 25.00 45.85 2.34
5846 15988 8.918202 AAAATCTGTGTAGTCAATTGACCTAA 57.082 30.769 30.34 16.38 45.85 2.69
5847 15989 8.783093 CAAAAATCTGTGTAGTCAATTGACCTA 58.217 33.333 30.34 19.91 45.85 3.08
5848 15990 7.285401 ACAAAAATCTGTGTAGTCAATTGACCT 59.715 33.333 30.34 20.79 45.85 3.85
5849 15991 7.425606 ACAAAAATCTGTGTAGTCAATTGACC 58.574 34.615 30.34 18.74 45.85 4.02
5850 15992 9.944663 TTACAAAAATCTGTGTAGTCAATTGAC 57.055 29.630 27.69 27.69 45.08 3.18
5878 16020 9.599866 CCTGATTTCTACTTGTTGTATGATGTA 57.400 33.333 0.00 0.00 0.00 2.29
5879 16021 7.066284 GCCTGATTTCTACTTGTTGTATGATGT 59.934 37.037 0.00 0.00 0.00 3.06
5880 16022 7.066163 TGCCTGATTTCTACTTGTTGTATGATG 59.934 37.037 0.00 0.00 0.00 3.07
5881 16023 7.112122 TGCCTGATTTCTACTTGTTGTATGAT 58.888 34.615 0.00 0.00 0.00 2.45
5882 16024 6.472016 TGCCTGATTTCTACTTGTTGTATGA 58.528 36.000 0.00 0.00 0.00 2.15
5883 16025 6.741992 TGCCTGATTTCTACTTGTTGTATG 57.258 37.500 0.00 0.00 0.00 2.39
5884 16026 6.714810 TGTTGCCTGATTTCTACTTGTTGTAT 59.285 34.615 0.00 0.00 0.00 2.29
5885 16027 6.058833 TGTTGCCTGATTTCTACTTGTTGTA 58.941 36.000 0.00 0.00 0.00 2.41
5886 16028 4.887071 TGTTGCCTGATTTCTACTTGTTGT 59.113 37.500 0.00 0.00 0.00 3.32
5887 16029 5.437289 TGTTGCCTGATTTCTACTTGTTG 57.563 39.130 0.00 0.00 0.00 3.33
5888 16030 6.463995 TTTGTTGCCTGATTTCTACTTGTT 57.536 33.333 0.00 0.00 0.00 2.83
5889 16031 6.463995 TTTTGTTGCCTGATTTCTACTTGT 57.536 33.333 0.00 0.00 0.00 3.16
5890 16032 7.373493 AGATTTTGTTGCCTGATTTCTACTTG 58.627 34.615 0.00 0.00 0.00 3.16
5891 16033 7.530426 AGATTTTGTTGCCTGATTTCTACTT 57.470 32.000 0.00 0.00 0.00 2.24
5892 16034 7.530426 AAGATTTTGTTGCCTGATTTCTACT 57.470 32.000 0.00 0.00 0.00 2.57
5919 16061 9.677567 GTGTTGTGTAGTCAAATGTATGAATTT 57.322 29.630 0.00 0.00 0.00 1.82
5920 16062 8.296713 GGTGTTGTGTAGTCAAATGTATGAATT 58.703 33.333 0.00 0.00 0.00 2.17
5921 16063 7.094377 GGGTGTTGTGTAGTCAAATGTATGAAT 60.094 37.037 0.00 0.00 0.00 2.57
5922 16064 6.205853 GGGTGTTGTGTAGTCAAATGTATGAA 59.794 38.462 0.00 0.00 0.00 2.57
5923 16065 5.703592 GGGTGTTGTGTAGTCAAATGTATGA 59.296 40.000 0.00 0.00 0.00 2.15
5924 16066 5.471797 TGGGTGTTGTGTAGTCAAATGTATG 59.528 40.000 0.00 0.00 0.00 2.39
5925 16067 5.626142 TGGGTGTTGTGTAGTCAAATGTAT 58.374 37.500 0.00 0.00 0.00 2.29
5926 16068 5.037383 TGGGTGTTGTGTAGTCAAATGTA 57.963 39.130 0.00 0.00 0.00 2.29
5927 16069 3.892284 TGGGTGTTGTGTAGTCAAATGT 58.108 40.909 0.00 0.00 0.00 2.71
5928 16070 4.909696 TTGGGTGTTGTGTAGTCAAATG 57.090 40.909 0.00 0.00 0.00 2.32
5929 16071 5.596361 TCAATTGGGTGTTGTGTAGTCAAAT 59.404 36.000 5.42 0.00 0.00 2.32
5930 16072 4.950475 TCAATTGGGTGTTGTGTAGTCAAA 59.050 37.500 5.42 0.00 0.00 2.69
5931 16073 4.336993 GTCAATTGGGTGTTGTGTAGTCAA 59.663 41.667 5.42 0.00 0.00 3.18
5932 16074 3.880490 GTCAATTGGGTGTTGTGTAGTCA 59.120 43.478 5.42 0.00 0.00 3.41
5933 16075 4.134563 AGTCAATTGGGTGTTGTGTAGTC 58.865 43.478 5.42 0.00 0.00 2.59
5934 16076 4.164843 AGTCAATTGGGTGTTGTGTAGT 57.835 40.909 5.42 0.00 0.00 2.73
5935 16077 5.049680 GTGTAGTCAATTGGGTGTTGTGTAG 60.050 44.000 5.42 0.00 0.00 2.74
5936 16078 4.817464 GTGTAGTCAATTGGGTGTTGTGTA 59.183 41.667 5.42 0.00 0.00 2.90
5937 16079 3.630312 GTGTAGTCAATTGGGTGTTGTGT 59.370 43.478 5.42 0.00 0.00 3.72
5938 16080 3.629855 TGTGTAGTCAATTGGGTGTTGTG 59.370 43.478 5.42 0.00 0.00 3.33
5939 16081 3.892284 TGTGTAGTCAATTGGGTGTTGT 58.108 40.909 5.42 0.00 0.00 3.32
5940 16082 4.518590 TCATGTGTAGTCAATTGGGTGTTG 59.481 41.667 5.42 0.00 0.00 3.33
5941 16083 4.724399 TCATGTGTAGTCAATTGGGTGTT 58.276 39.130 5.42 0.00 0.00 3.32
5942 16084 4.365514 TCATGTGTAGTCAATTGGGTGT 57.634 40.909 5.42 0.00 0.00 4.16
5943 16085 6.767423 TCATATCATGTGTAGTCAATTGGGTG 59.233 38.462 5.42 0.00 0.00 4.61
5944 16086 6.899089 TCATATCATGTGTAGTCAATTGGGT 58.101 36.000 5.42 0.00 0.00 4.51
5945 16087 7.991084 ATCATATCATGTGTAGTCAATTGGG 57.009 36.000 5.42 0.00 0.00 4.12
5946 16088 8.225777 CGAATCATATCATGTGTAGTCAATTGG 58.774 37.037 5.42 0.00 0.00 3.16
5947 16089 8.768019 ACGAATCATATCATGTGTAGTCAATTG 58.232 33.333 0.00 0.00 0.00 2.32
5948 16090 8.768019 CACGAATCATATCATGTGTAGTCAATT 58.232 33.333 0.00 0.00 0.00 2.32
5949 16091 7.386025 CCACGAATCATATCATGTGTAGTCAAT 59.614 37.037 0.00 0.00 0.00 2.57
5950 16092 6.701400 CCACGAATCATATCATGTGTAGTCAA 59.299 38.462 0.00 0.00 0.00 3.18
5951 16093 6.215845 CCACGAATCATATCATGTGTAGTCA 58.784 40.000 0.00 0.00 0.00 3.41
5952 16094 5.119279 GCCACGAATCATATCATGTGTAGTC 59.881 44.000 0.00 0.00 0.00 2.59
5953 16095 4.991056 GCCACGAATCATATCATGTGTAGT 59.009 41.667 0.00 0.00 0.00 2.73
5954 16096 4.990426 TGCCACGAATCATATCATGTGTAG 59.010 41.667 0.00 0.00 0.00 2.74
5955 16097 4.749598 GTGCCACGAATCATATCATGTGTA 59.250 41.667 0.00 0.00 0.00 2.90
5956 16098 3.561310 GTGCCACGAATCATATCATGTGT 59.439 43.478 0.00 0.00 0.00 3.72
5957 16099 3.058708 GGTGCCACGAATCATATCATGTG 60.059 47.826 0.00 0.00 0.00 3.21
5958 16100 3.141398 GGTGCCACGAATCATATCATGT 58.859 45.455 0.00 0.00 0.00 3.21
5959 16101 2.158254 CGGTGCCACGAATCATATCATG 59.842 50.000 0.00 0.00 35.47 3.07
5960 16102 2.416747 CGGTGCCACGAATCATATCAT 58.583 47.619 0.00 0.00 35.47 2.45
5961 16103 1.864565 CGGTGCCACGAATCATATCA 58.135 50.000 0.00 0.00 35.47 2.15
5962 16104 0.512952 GCGGTGCCACGAATCATATC 59.487 55.000 0.98 0.00 35.47 1.63
5963 16105 2.616969 GCGGTGCCACGAATCATAT 58.383 52.632 0.98 0.00 35.47 1.78
5964 16106 4.118480 GCGGTGCCACGAATCATA 57.882 55.556 0.98 0.00 35.47 2.15
5978 16120 4.113354 GTCTTTATCTAACTCAGTGGCGG 58.887 47.826 0.00 0.00 0.00 6.13
5980 16122 4.162509 AGGGTCTTTATCTAACTCAGTGGC 59.837 45.833 0.00 0.00 0.00 5.01
5982 16124 8.622948 AAAAAGGGTCTTTATCTAACTCAGTG 57.377 34.615 0.00 0.00 0.00 3.66
6101 16252 5.006746 ACTCAGCACGTTGTAGAAAGAAAAG 59.993 40.000 0.00 0.00 0.00 2.27
6103 16254 4.270084 CACTCAGCACGTTGTAGAAAGAAA 59.730 41.667 0.00 0.00 0.00 2.52
6104 16255 3.802139 CACTCAGCACGTTGTAGAAAGAA 59.198 43.478 0.00 0.00 0.00 2.52
6105 16256 3.181479 ACACTCAGCACGTTGTAGAAAGA 60.181 43.478 0.00 0.00 0.00 2.52
6106 16257 3.123804 ACACTCAGCACGTTGTAGAAAG 58.876 45.455 0.00 0.00 0.00 2.62
6109 16260 1.954382 AGACACTCAGCACGTTGTAGA 59.046 47.619 0.00 0.00 0.00 2.59
6264 16467 9.836864 TGTCTGCTAATAACATAGTCATTCATT 57.163 29.630 0.00 0.00 0.00 2.57
6274 16477 9.830975 TTCAAGCTTATGTCTGCTAATAACATA 57.169 29.630 0.00 0.00 38.75 2.29
6351 16554 5.675684 AAATAAACCCAGCAAACCCATAG 57.324 39.130 0.00 0.00 0.00 2.23
6407 16637 1.068333 CCACATTTCTGCAAAGGGTCG 60.068 52.381 0.00 0.00 0.00 4.79
6462 16692 2.674852 CTGATCCATCGACAGTGTTTGG 59.325 50.000 12.34 12.34 0.00 3.28
6473 16703 3.355626 TTAACGCTCTCTGATCCATCG 57.644 47.619 0.00 0.00 0.00 3.84
6526 16756 4.900635 ATTCAGGGTTAAACATGATCGC 57.099 40.909 8.93 0.00 0.00 4.58
6548 16778 5.813080 AAACAACGAGAAAAAGTACTGCT 57.187 34.783 0.00 0.00 0.00 4.24
6573 16804 6.866480 ACGAAAGGAACGATACTTGGTAATA 58.134 36.000 0.00 0.00 34.70 0.98
6578 16812 3.991773 TGAACGAAAGGAACGATACTTGG 59.008 43.478 0.00 0.00 34.70 3.61
6579 16813 4.091509 CCTGAACGAAAGGAACGATACTTG 59.908 45.833 0.00 0.00 36.91 3.16
6594 16829 0.396435 ACAACTGGCATCCTGAACGA 59.604 50.000 0.00 0.00 0.00 3.85
6606 16841 5.437060 ACAGTTAATAGGGCATACAACTGG 58.563 41.667 26.07 15.38 40.66 4.00
6629 16867 5.300034 CAGCTGAAATACAAGGCATATGGAA 59.700 40.000 8.42 0.00 0.00 3.53
6789 17029 1.048601 AGGTCAGGCAAAGTCGAGAA 58.951 50.000 0.00 0.00 0.00 2.87
6924 17165 0.252197 GGCATGAAACGGACTACCCT 59.748 55.000 0.00 0.00 0.00 4.34
6934 17175 2.225491 TGAGCAAACTACGGCATGAAAC 59.775 45.455 0.00 0.00 0.00 2.78
6991 17232 1.792941 GGCAAGAGCAGCTTCTTCG 59.207 57.895 0.00 0.00 44.61 3.79
7031 17272 2.739996 CCCTGGCAAGCGAGAGGAT 61.740 63.158 5.61 0.00 0.00 3.24
7057 17298 2.920490 GAGAAGACGACTCACAAGCATC 59.080 50.000 0.00 0.00 34.87 3.91
7094 17390 4.114794 AGTGCTTTGCATGAAAAGAACAC 58.885 39.130 31.23 25.75 44.94 3.32
7126 17424 3.081061 TCACATTTGGTCGGAATTCCAG 58.919 45.455 24.09 16.06 35.05 3.86
7127 17425 3.081061 CTCACATTTGGTCGGAATTCCA 58.919 45.455 24.09 8.75 35.14 3.53
7176 17509 6.607735 AAGAGAGACATTACTAGTACGAGC 57.392 41.667 0.91 0.00 0.00 5.03
7201 17534 8.722480 TCTACAGACATGTTGAATTATTCTGG 57.278 34.615 0.00 0.00 38.07 3.86
7261 17597 1.522092 CTCTTGGGCACGCCTATCA 59.478 57.895 8.20 0.00 36.10 2.15
7276 17612 3.837146 TCTTGTTCTTCAGCATCTCCTCT 59.163 43.478 0.00 0.00 0.00 3.69
7351 17687 2.169352 ACAGGGAGGAGTTCATCATTCG 59.831 50.000 0.00 0.00 0.00 3.34
7355 17691 3.724478 ACATACAGGGAGGAGTTCATCA 58.276 45.455 0.00 0.00 0.00 3.07
7431 17769 2.355513 GGTGGTCTGCTGAACTCATCAT 60.356 50.000 10.22 0.00 37.44 2.45
7438 17776 1.639298 GCGATGGTGGTCTGCTGAAC 61.639 60.000 0.93 0.93 0.00 3.18
7483 17822 2.876368 ATCCCTCCTGCTTTTCGCCG 62.876 60.000 0.00 0.00 38.05 6.46
7545 17886 6.835174 AGGTGCAGTAATTACATGATCTGAT 58.165 36.000 17.65 0.00 0.00 2.90
7551 17892 6.553953 TTAGGAGGTGCAGTAATTACATGA 57.446 37.500 17.65 0.00 0.00 3.07
7581 17927 1.154814 GGAGCAAGGCTACGCTAAGC 61.155 60.000 10.99 0.00 39.88 3.09
7595 17943 2.871096 AGTAATTCAAACGGGGAGCA 57.129 45.000 0.00 0.00 0.00 4.26
7617 17965 7.712639 AGCATGGAATTCTACAACATACTACTG 59.287 37.037 5.23 0.00 0.00 2.74
7643 18094 3.510753 ACACAATGCTTCCATAATGTGCA 59.489 39.130 3.81 0.00 41.00 4.57
7657 18112 2.083774 TGCACTAGGCTAACACAATGC 58.916 47.619 0.00 0.26 45.15 3.56
7659 18114 4.576463 GCTAATGCACTAGGCTAACACAAT 59.424 41.667 4.09 0.00 45.15 2.71
7661 18116 3.531538 GCTAATGCACTAGGCTAACACA 58.468 45.455 4.09 0.00 45.15 3.72
7670 18125 2.868583 ACATGAAGCGCTAATGCACTAG 59.131 45.455 25.17 0.00 39.64 2.57
7768 18236 5.855740 TGCATCCATCTTATTTGATTGCA 57.144 34.783 0.00 0.00 36.18 4.08
7780 18248 9.393512 GCTAGATTATTTCTATTGCATCCATCT 57.606 33.333 0.00 0.00 36.35 2.90
7781 18249 8.619546 GGCTAGATTATTTCTATTGCATCCATC 58.380 37.037 0.00 0.00 36.35 3.51
7782 18250 7.281774 CGGCTAGATTATTTCTATTGCATCCAT 59.718 37.037 0.00 0.00 36.35 3.41
7783 18251 6.595326 CGGCTAGATTATTTCTATTGCATCCA 59.405 38.462 0.00 0.00 36.35 3.41
7784 18252 6.818644 TCGGCTAGATTATTTCTATTGCATCC 59.181 38.462 0.00 0.00 36.35 3.51
7785 18253 7.834068 TCGGCTAGATTATTTCTATTGCATC 57.166 36.000 0.00 0.00 36.35 3.91
7786 18254 8.043113 TCATCGGCTAGATTATTTCTATTGCAT 58.957 33.333 0.00 0.00 37.52 3.96
7787 18255 7.331934 GTCATCGGCTAGATTATTTCTATTGCA 59.668 37.037 0.00 0.00 37.52 4.08
7788 18256 7.331934 TGTCATCGGCTAGATTATTTCTATTGC 59.668 37.037 0.00 0.00 37.52 3.56
7789 18257 8.763049 TGTCATCGGCTAGATTATTTCTATTG 57.237 34.615 0.00 0.00 37.52 1.90
7790 18258 9.376075 CATGTCATCGGCTAGATTATTTCTATT 57.624 33.333 0.00 0.00 37.52 1.73
7791 18259 7.984050 CCATGTCATCGGCTAGATTATTTCTAT 59.016 37.037 0.00 0.00 37.52 1.98
7792 18260 7.039011 ACCATGTCATCGGCTAGATTATTTCTA 60.039 37.037 0.00 0.00 37.52 2.10
7793 18261 6.169094 CCATGTCATCGGCTAGATTATTTCT 58.831 40.000 0.00 0.00 37.52 2.52
7794 18262 5.934625 ACCATGTCATCGGCTAGATTATTTC 59.065 40.000 0.00 0.00 37.52 2.17
7795 18263 5.869579 ACCATGTCATCGGCTAGATTATTT 58.130 37.500 0.00 0.00 37.52 1.40
7796 18264 5.489792 ACCATGTCATCGGCTAGATTATT 57.510 39.130 0.00 0.00 37.52 1.40
7797 18265 5.393135 CGTACCATGTCATCGGCTAGATTAT 60.393 44.000 0.00 0.00 37.52 1.28
7798 18266 4.082949 CGTACCATGTCATCGGCTAGATTA 60.083 45.833 0.00 0.00 37.52 1.75
7799 18267 3.305403 CGTACCATGTCATCGGCTAGATT 60.305 47.826 0.00 0.00 37.52 2.40
7800 18268 2.229062 CGTACCATGTCATCGGCTAGAT 59.771 50.000 0.00 0.00 41.01 1.98
7801 18269 1.607148 CGTACCATGTCATCGGCTAGA 59.393 52.381 0.00 0.00 0.00 2.43
7802 18270 1.607148 TCGTACCATGTCATCGGCTAG 59.393 52.381 0.00 0.00 0.00 3.42
7803 18271 1.682740 TCGTACCATGTCATCGGCTA 58.317 50.000 0.00 0.00 0.00 3.93
7804 18272 1.040646 ATCGTACCATGTCATCGGCT 58.959 50.000 0.00 0.00 0.00 5.52
7805 18273 1.865865 AATCGTACCATGTCATCGGC 58.134 50.000 0.00 0.00 0.00 5.54
7806 18274 3.001228 CACAAATCGTACCATGTCATCGG 59.999 47.826 0.00 1.14 0.00 4.18
7807 18275 3.544048 GCACAAATCGTACCATGTCATCG 60.544 47.826 0.00 0.00 0.00 3.84
7808 18276 3.373748 TGCACAAATCGTACCATGTCATC 59.626 43.478 0.00 0.00 0.00 2.92
7809 18277 3.342719 TGCACAAATCGTACCATGTCAT 58.657 40.909 0.00 0.00 0.00 3.06
7810 18278 2.772287 TGCACAAATCGTACCATGTCA 58.228 42.857 0.00 0.00 0.00 3.58
7811 18279 3.435327 TCTTGCACAAATCGTACCATGTC 59.565 43.478 0.00 0.00 0.00 3.06
7812 18280 3.407698 TCTTGCACAAATCGTACCATGT 58.592 40.909 0.00 0.00 0.00 3.21
7813 18281 4.418013 TTCTTGCACAAATCGTACCATG 57.582 40.909 0.00 0.00 0.00 3.66
7814 18282 5.446143 TTTTCTTGCACAAATCGTACCAT 57.554 34.783 0.00 0.00 0.00 3.55
7815 18283 4.902443 TTTTCTTGCACAAATCGTACCA 57.098 36.364 0.00 0.00 0.00 3.25
7837 18305 6.298361 CCAACCCAGATTTCTTGGAATTTTT 58.702 36.000 4.79 0.00 36.06 1.94
7838 18306 5.221904 CCCAACCCAGATTTCTTGGAATTTT 60.222 40.000 4.79 0.00 36.06 1.82
7839 18307 4.286808 CCCAACCCAGATTTCTTGGAATTT 59.713 41.667 4.79 0.00 36.06 1.82
7840 18308 3.840078 CCCAACCCAGATTTCTTGGAATT 59.160 43.478 4.79 0.00 36.06 2.17
7841 18309 3.077391 TCCCAACCCAGATTTCTTGGAAT 59.923 43.478 4.79 0.00 36.06 3.01
7842 18310 2.448961 TCCCAACCCAGATTTCTTGGAA 59.551 45.455 4.79 0.00 36.06 3.53
7843 18311 2.041620 CTCCCAACCCAGATTTCTTGGA 59.958 50.000 4.79 0.00 36.06 3.53
7844 18312 2.041620 TCTCCCAACCCAGATTTCTTGG 59.958 50.000 0.00 0.00 35.10 3.61
7845 18313 3.350833 CTCTCCCAACCCAGATTTCTTG 58.649 50.000 0.00 0.00 0.00 3.02
7846 18314 2.310052 CCTCTCCCAACCCAGATTTCTT 59.690 50.000 0.00 0.00 0.00 2.52
7847 18315 1.918957 CCTCTCCCAACCCAGATTTCT 59.081 52.381 0.00 0.00 0.00 2.52
7848 18316 1.916181 TCCTCTCCCAACCCAGATTTC 59.084 52.381 0.00 0.00 0.00 2.17
7849 18317 2.041755 GTTCCTCTCCCAACCCAGATTT 59.958 50.000 0.00 0.00 0.00 2.17
7850 18318 1.636003 GTTCCTCTCCCAACCCAGATT 59.364 52.381 0.00 0.00 0.00 2.40
7851 18319 1.290134 GTTCCTCTCCCAACCCAGAT 58.710 55.000 0.00 0.00 0.00 2.90
7852 18320 0.104672 TGTTCCTCTCCCAACCCAGA 60.105 55.000 0.00 0.00 0.00 3.86
7853 18321 0.326264 CTGTTCCTCTCCCAACCCAG 59.674 60.000 0.00 0.00 0.00 4.45
7854 18322 1.779061 GCTGTTCCTCTCCCAACCCA 61.779 60.000 0.00 0.00 0.00 4.51
7855 18323 1.002011 GCTGTTCCTCTCCCAACCC 60.002 63.158 0.00 0.00 0.00 4.11
7856 18324 0.110486 TTGCTGTTCCTCTCCCAACC 59.890 55.000 0.00 0.00 0.00 3.77
7857 18325 1.528129 CTTGCTGTTCCTCTCCCAAC 58.472 55.000 0.00 0.00 0.00 3.77
7858 18326 0.250901 GCTTGCTGTTCCTCTCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
7859 18327 1.376466 GCTTGCTGTTCCTCTCCCA 59.624 57.895 0.00 0.00 0.00 4.37
7860 18328 1.377856 GGCTTGCTGTTCCTCTCCC 60.378 63.158 0.00 0.00 0.00 4.30
7861 18329 0.676151 CAGGCTTGCTGTTCCTCTCC 60.676 60.000 0.00 0.00 0.00 3.71
7862 18330 1.304509 GCAGGCTTGCTGTTCCTCTC 61.305 60.000 14.45 0.00 46.95 3.20
7863 18331 1.303155 GCAGGCTTGCTGTTCCTCT 60.303 57.895 14.45 0.00 46.95 3.69
7864 18332 3.272031 GCAGGCTTGCTGTTCCTC 58.728 61.111 14.45 0.00 46.95 3.71
7872 18340 1.813728 AAAAGCTCAGGCAGGCTTGC 61.814 55.000 13.24 13.24 46.35 4.01
7873 18341 0.677842 AAAAAGCTCAGGCAGGCTTG 59.322 50.000 11.16 0.00 46.35 4.01
7875 18343 0.112025 AGAAAAAGCTCAGGCAGGCT 59.888 50.000 0.00 0.00 41.70 4.58
7876 18344 1.470494 GTAGAAAAAGCTCAGGCAGGC 59.530 52.381 0.00 0.00 41.70 4.85
7877 18345 2.087646 GGTAGAAAAAGCTCAGGCAGG 58.912 52.381 0.00 0.00 41.70 4.85
7878 18346 2.746362 CAGGTAGAAAAAGCTCAGGCAG 59.254 50.000 0.00 0.00 41.70 4.85
7919 18387 1.036707 GCAACAAACCTGCCAACCTA 58.963 50.000 0.00 0.00 33.51 3.08
7922 18390 1.591327 CCGCAACAAACCTGCCAAC 60.591 57.895 0.00 0.00 36.40 3.77
7933 18401 0.320858 TCGCCTGTAAATCCGCAACA 60.321 50.000 0.00 0.00 0.00 3.33
7936 18404 1.524848 TTTTCGCCTGTAAATCCGCA 58.475 45.000 0.00 0.00 0.00 5.69
7937 18405 2.622546 TTTTTCGCCTGTAAATCCGC 57.377 45.000 0.00 0.00 0.00 5.54
7938 18406 4.349663 TGATTTTTCGCCTGTAAATCCG 57.650 40.909 0.00 0.00 37.43 4.18
7939 18407 4.504097 GCATGATTTTTCGCCTGTAAATCC 59.496 41.667 0.00 0.00 37.43 3.01
7948 18417 0.380378 TAGCGGCATGATTTTTCGCC 59.620 50.000 1.45 0.00 46.42 5.54
7979 18448 7.689953 AATACGTGACATAATCTTCGGTAAC 57.310 36.000 0.00 0.00 32.50 2.50
7980 18449 7.436080 GGAAATACGTGACATAATCTTCGGTAA 59.564 37.037 0.00 0.00 32.50 2.85
7981 18450 6.919662 GGAAATACGTGACATAATCTTCGGTA 59.080 38.462 0.00 0.00 32.50 4.02
7982 18451 5.751990 GGAAATACGTGACATAATCTTCGGT 59.248 40.000 0.00 0.00 32.50 4.69
7983 18452 5.751509 TGGAAATACGTGACATAATCTTCGG 59.248 40.000 0.00 0.00 32.50 4.30
7984 18453 6.822073 TGGAAATACGTGACATAATCTTCG 57.178 37.500 0.00 0.00 0.00 3.79
7985 18454 7.903431 GTGTTGGAAATACGTGACATAATCTTC 59.097 37.037 0.00 0.00 0.00 2.87
7986 18455 7.389330 TGTGTTGGAAATACGTGACATAATCTT 59.611 33.333 0.00 0.00 41.24 2.40
7987 18456 6.876789 TGTGTTGGAAATACGTGACATAATCT 59.123 34.615 0.00 0.00 41.24 2.40
7988 18457 7.067532 TGTGTTGGAAATACGTGACATAATC 57.932 36.000 0.00 0.00 41.24 1.75
7990 18459 6.260271 TGTTGTGTTGGAAATACGTGACATAA 59.740 34.615 0.00 0.00 41.24 1.90
7991 18460 5.758784 TGTTGTGTTGGAAATACGTGACATA 59.241 36.000 0.00 0.00 41.24 2.29
7992 18461 4.576873 TGTTGTGTTGGAAATACGTGACAT 59.423 37.500 0.00 0.00 41.24 3.06
7994 18463 4.539509 TGTTGTGTTGGAAATACGTGAC 57.460 40.909 0.00 0.00 41.24 3.67
7995 18464 4.876679 TCTTGTTGTGTTGGAAATACGTGA 59.123 37.500 0.00 0.00 41.24 4.35
7996 18465 5.163302 TCTTGTTGTGTTGGAAATACGTG 57.837 39.130 0.00 0.00 41.24 4.49
7997 18466 6.385649 AATCTTGTTGTGTTGGAAATACGT 57.614 33.333 0.00 0.00 41.24 3.57
8013 18584 4.853924 ATCGACAAAGGCAAAATCTTGT 57.146 36.364 0.00 0.00 34.79 3.16
8022 18593 0.400213 ACTGGGAATCGACAAAGGCA 59.600 50.000 0.00 0.00 0.00 4.75
8023 18594 1.468914 GAACTGGGAATCGACAAAGGC 59.531 52.381 0.00 0.00 0.00 4.35
8032 18603 5.335976 GGAGTTTCATGTTGAACTGGGAATC 60.336 44.000 13.72 0.00 35.89 2.52
8042 18613 1.271163 GGACCGGGAGTTTCATGTTGA 60.271 52.381 6.32 0.00 0.00 3.18
8043 18614 1.165270 GGACCGGGAGTTTCATGTTG 58.835 55.000 6.32 0.00 0.00 3.33
8044 18615 0.037734 GGGACCGGGAGTTTCATGTT 59.962 55.000 6.32 0.00 0.00 2.71
8046 18617 1.139058 CTAGGGACCGGGAGTTTCATG 59.861 57.143 6.32 0.00 0.00 3.07
8047 18618 1.273666 ACTAGGGACCGGGAGTTTCAT 60.274 52.381 6.32 0.00 0.00 2.57
8048 18619 0.115745 ACTAGGGACCGGGAGTTTCA 59.884 55.000 6.32 0.00 0.00 2.69
8049 18620 1.273759 AACTAGGGACCGGGAGTTTC 58.726 55.000 6.32 0.00 0.00 2.78
8050 18621 1.350019 CAAACTAGGGACCGGGAGTTT 59.650 52.381 6.32 10.30 41.60 2.66
8053 18634 1.272807 TTCAAACTAGGGACCGGGAG 58.727 55.000 6.32 0.00 0.00 4.30
8059 18640 3.014304 GGGGGAATTCAAACTAGGGAC 57.986 52.381 7.93 0.00 0.00 4.46
8078 18659 2.419620 GCGTTTGGTTGGGTTGGG 59.580 61.111 0.00 0.00 0.00 4.12
8081 18662 1.139947 CAACGCGTTTGGTTGGGTT 59.860 52.632 24.21 0.00 40.75 4.11
8082 18663 2.802106 CAACGCGTTTGGTTGGGT 59.198 55.556 24.21 0.00 40.75 4.51
8140 18721 0.898320 GGCTCCAAGCTCTACACAGA 59.102 55.000 0.00 0.00 41.99 3.41
8153 18734 0.331278 ATCGAAAACCATGGGCTCCA 59.669 50.000 18.09 0.00 38.19 3.86
8154 18735 1.025041 GATCGAAAACCATGGGCTCC 58.975 55.000 18.09 1.46 0.00 4.70
8214 18799 2.613506 GCTTTGAACCACGGACGGG 61.614 63.158 0.00 0.00 0.00 5.28
8215 18800 2.613506 GGCTTTGAACCACGGACGG 61.614 63.158 0.00 0.00 0.00 4.79
8245 18830 0.174617 GGAGAGAAAGTCGCCCAGAG 59.825 60.000 0.00 0.00 39.20 3.35
8253 18838 0.173708 ATGGCGACGGAGAGAAAGTC 59.826 55.000 0.00 0.00 0.00 3.01
8274 18859 0.685785 TCTGCTCTGAGTAGGCCCAG 60.686 60.000 20.37 11.13 0.00 4.45
8280 18865 1.090728 TGACGCTCTGCTCTGAGTAG 58.909 55.000 15.61 15.61 36.51 2.57
8296 18881 3.438434 GGCCTGAATGAGAAGAAAGTGAC 59.562 47.826 0.00 0.00 0.00 3.67
8299 18884 3.795688 TGGCCTGAATGAGAAGAAAGT 57.204 42.857 3.32 0.00 0.00 2.66
8304 18889 3.190118 GTGAAGTTGGCCTGAATGAGAAG 59.810 47.826 3.32 0.00 0.00 2.85
8315 18900 4.389576 CGCGCTGTGAAGTTGGCC 62.390 66.667 5.56 0.00 0.00 5.36
8316 18901 3.345808 TCGCGCTGTGAAGTTGGC 61.346 61.111 5.56 0.00 0.00 4.52
8317 18902 2.551270 GTCGCGCTGTGAAGTTGG 59.449 61.111 5.56 0.00 0.00 3.77
8318 18903 2.551270 GGTCGCGCTGTGAAGTTG 59.449 61.111 5.56 0.00 0.00 3.16
8319 18904 1.812686 TAGGGTCGCGCTGTGAAGTT 61.813 55.000 5.56 0.00 0.00 2.66
8320 18905 1.605058 ATAGGGTCGCGCTGTGAAGT 61.605 55.000 5.56 0.00 0.00 3.01
8321 18906 0.872021 GATAGGGTCGCGCTGTGAAG 60.872 60.000 5.56 0.00 0.00 3.02
8322 18907 1.141019 GATAGGGTCGCGCTGTGAA 59.859 57.895 5.56 0.00 0.00 3.18
8323 18908 2.782222 GGATAGGGTCGCGCTGTGA 61.782 63.158 5.56 0.00 0.00 3.58
8324 18909 2.279517 GGATAGGGTCGCGCTGTG 60.280 66.667 5.56 0.00 0.00 3.66
8325 18910 1.614241 AAAGGATAGGGTCGCGCTGT 61.614 55.000 5.56 0.00 0.00 4.40
8326 18911 0.876342 GAAAGGATAGGGTCGCGCTG 60.876 60.000 5.56 0.00 0.00 5.18
8327 18912 1.442148 GAAAGGATAGGGTCGCGCT 59.558 57.895 5.56 0.00 0.00 5.92
8328 18913 1.594564 GGAAAGGATAGGGTCGCGC 60.595 63.158 0.00 0.00 0.00 6.86
8329 18914 1.299926 CGGAAAGGATAGGGTCGCG 60.300 63.158 0.00 0.00 0.00 5.87
8330 18915 0.249363 GACGGAAAGGATAGGGTCGC 60.249 60.000 0.00 0.00 0.00 5.19
8331 18916 0.388294 GGACGGAAAGGATAGGGTCG 59.612 60.000 0.00 0.00 0.00 4.79
8332 18917 0.757512 GGGACGGAAAGGATAGGGTC 59.242 60.000 0.00 0.00 0.00 4.46
8333 18918 0.693430 GGGGACGGAAAGGATAGGGT 60.693 60.000 0.00 0.00 0.00 4.34
8334 18919 2.143129 GGGGACGGAAAGGATAGGG 58.857 63.158 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.