Multiple sequence alignment - TraesCS3A01G486600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G486600 chr3A 100.000 3068 0 0 1 3068 714726989 714730056 0.000000e+00 5666.0
1 TraesCS3A01G486600 chr3A 88.376 1213 134 7 955 2163 714758183 714759392 0.000000e+00 1452.0
2 TraesCS3A01G486600 chr3A 86.207 783 95 8 1469 2243 714768994 714769771 0.000000e+00 835.0
3 TraesCS3A01G486600 chr3A 88.660 291 32 1 2541 2831 714769865 714770154 1.350000e-93 353.0
4 TraesCS3A01G486600 chr3A 89.850 266 25 2 955 1219 714737783 714738047 1.050000e-89 340.0
5 TraesCS3A01G486600 chr3A 92.424 66 4 1 346 410 722805619 722805554 3.260000e-15 93.5
6 TraesCS3A01G486600 chr3A 90.769 65 6 0 279 343 230985015 230985079 1.520000e-13 87.9
7 TraesCS3A01G486600 chr3A 77.941 136 15 11 282 410 378424918 378424791 1.530000e-08 71.3
8 TraesCS3A01G486600 chr3B 89.089 2108 168 21 955 3050 774125209 774127266 0.000000e+00 2562.0
9 TraesCS3A01G486600 chr3B 91.700 1747 122 12 769 2499 774057639 774059378 0.000000e+00 2401.0
10 TraesCS3A01G486600 chr3B 89.987 1568 126 17 777 2336 735131828 735130284 0.000000e+00 1997.0
11 TraesCS3A01G486600 chr3B 88.316 1532 156 16 976 2499 774153664 774155180 0.000000e+00 1816.0
12 TraesCS3A01G486600 chr3B 90.552 688 41 6 2366 3049 735130289 735129622 0.000000e+00 889.0
13 TraesCS3A01G486600 chr3B 87.234 376 48 0 976 1351 774158944 774159319 2.190000e-116 429.0
14 TraesCS3A01G486600 chr3B 83.063 431 26 12 2619 3049 774155201 774155584 6.300000e-92 348.0
15 TraesCS3A01G486600 chr3B 85.333 300 36 5 2676 2969 734993526 734993229 1.380000e-78 303.0
16 TraesCS3A01G486600 chr3B 82.532 395 18 9 2619 3008 774059399 774059747 1.790000e-77 300.0
17 TraesCS3A01G486600 chr3B 90.722 97 4 4 2954 3050 774061281 774061372 1.160000e-24 124.0
18 TraesCS3A01G486600 chr3B 89.691 97 5 4 2954 3050 735128045 735127954 5.370000e-23 119.0
19 TraesCS3A01G486600 chr3D 85.316 2370 226 61 643 2957 579598652 579600954 0.000000e+00 2337.0
20 TraesCS3A01G486600 chr3D 90.772 1528 127 8 976 2499 579614416 579615933 0.000000e+00 2028.0
21 TraesCS3A01G486600 chr3D 87.677 779 86 6 1469 2239 579658836 579659612 0.000000e+00 898.0
22 TraesCS3A01G486600 chr3D 83.295 431 25 4 2619 3049 579615954 579616337 1.350000e-93 353.0
23 TraesCS3A01G486600 chr3D 71.091 550 143 12 1384 1923 89547531 89546988 1.490000e-23 121.0
24 TraesCS3A01G486600 chr3D 87.629 97 7 4 2954 3050 579617863 579617954 1.160000e-19 108.0
25 TraesCS3A01G486600 chr1A 95.880 267 6 1 1 262 93516003 93515737 7.860000e-116 427.0
26 TraesCS3A01G486600 chr7D 94.776 268 9 3 1 263 29471539 29471272 2.200000e-111 412.0
27 TraesCS3A01G486600 chr7D 92.537 268 15 1 1 263 618061244 618060977 2.230000e-101 379.0
28 TraesCS3A01G486600 chr7D 88.060 67 7 1 345 410 632787557 632787623 9.120000e-11 78.7
29 TraesCS3A01G486600 chr7A 94.776 268 8 2 1 263 10387907 10388173 2.200000e-111 412.0
30 TraesCS3A01G486600 chr7A 92.537 268 14 2 1 263 14738491 14738757 2.230000e-101 379.0
31 TraesCS3A01G486600 chr7A 93.846 65 3 1 279 343 621764552 621764615 2.520000e-16 97.1
32 TraesCS3A01G486600 chr1D 94.776 268 8 4 1 263 376973182 376973448 2.200000e-111 412.0
33 TraesCS3A01G486600 chr1D 93.284 268 12 4 1 263 273471287 273471021 1.030000e-104 390.0
34 TraesCS3A01G486600 chr1D 90.476 63 4 1 279 341 482000138 482000198 7.050000e-12 82.4
35 TraesCS3A01G486600 chr1D 84.848 66 5 3 346 411 46166578 46166518 9.190000e-06 62.1
36 TraesCS3A01G486600 chr6B 94.403 268 9 2 1 263 218022981 218022715 1.020000e-109 407.0
37 TraesCS3A01G486600 chr5A 92.537 268 14 2 1 263 634887982 634888248 2.230000e-101 379.0
38 TraesCS3A01G486600 chr5A 93.548 62 3 1 279 340 363872864 363872924 1.170000e-14 91.6
39 TraesCS3A01G486600 chr4A 95.082 61 2 1 279 339 563226453 563226512 9.060000e-16 95.3
40 TraesCS3A01G486600 chr4A 92.063 63 4 1 279 341 673352228 673352289 1.520000e-13 87.9
41 TraesCS3A01G486600 chr1B 93.333 60 3 1 282 341 263547387 263547329 1.520000e-13 87.9
42 TraesCS3A01G486600 chr1B 92.857 56 3 1 288 343 488661344 488661290 2.540000e-11 80.5
43 TraesCS3A01G486600 chr7B 89.706 68 6 1 345 411 40342832 40342899 5.450000e-13 86.1
44 TraesCS3A01G486600 chr7B 88.000 75 6 3 345 417 632557599 632557526 5.450000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G486600 chr3A 714726989 714730056 3067 False 5666.000000 5666 100.000000 1 3068 1 chr3A.!!$F2 3067
1 TraesCS3A01G486600 chr3A 714758183 714759392 1209 False 1452.000000 1452 88.376000 955 2163 1 chr3A.!!$F4 1208
2 TraesCS3A01G486600 chr3A 714768994 714770154 1160 False 594.000000 835 87.433500 1469 2831 2 chr3A.!!$F5 1362
3 TraesCS3A01G486600 chr3B 774125209 774127266 2057 False 2562.000000 2562 89.089000 955 3050 1 chr3B.!!$F1 2095
4 TraesCS3A01G486600 chr3B 735127954 735131828 3874 True 1001.666667 1997 90.076667 777 3050 3 chr3B.!!$R2 2273
5 TraesCS3A01G486600 chr3B 774057639 774061372 3733 False 941.666667 2401 88.318000 769 3050 3 chr3B.!!$F2 2281
6 TraesCS3A01G486600 chr3B 774153664 774159319 5655 False 864.333333 1816 86.204333 976 3049 3 chr3B.!!$F3 2073
7 TraesCS3A01G486600 chr3D 579598652 579600954 2302 False 2337.000000 2337 85.316000 643 2957 1 chr3D.!!$F1 2314
8 TraesCS3A01G486600 chr3D 579658836 579659612 776 False 898.000000 898 87.677000 1469 2239 1 chr3D.!!$F2 770
9 TraesCS3A01G486600 chr3D 579614416 579617954 3538 False 829.666667 2028 87.232000 976 3050 3 chr3D.!!$F3 2074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.035439 GAAGACCCGCCTCATTTCCA 60.035 55.0 0.0 0.0 0.0 3.53 F
100 101 0.250513 ATTCACGGACCTTCTCTGGC 59.749 55.0 0.0 0.0 0.0 4.85 F
748 761 0.396417 TGTGGGTTTGGTGGTCTTGG 60.396 55.0 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 1651 1.303561 GACTGGTGATTGGGCAGCA 60.304 57.895 0.00 0.0 43.27 4.41 R
1625 1670 1.609061 CCGCACTGAAGACTGGTGATT 60.609 52.381 7.41 0.0 33.32 2.57 R
2132 2185 1.341383 CCAAACCAGGGAGCTAAGCAT 60.341 52.381 0.00 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.796408 AGAGAAGACCCGCCTCAT 57.204 55.556 0.00 0.00 0.00 2.90
18 19 2.998493 AGAGAAGACCCGCCTCATT 58.002 52.632 0.00 0.00 0.00 2.57
19 20 1.280457 AGAGAAGACCCGCCTCATTT 58.720 50.000 0.00 0.00 0.00 2.32
20 21 1.208293 AGAGAAGACCCGCCTCATTTC 59.792 52.381 0.00 0.00 0.00 2.17
21 22 0.253327 AGAAGACCCGCCTCATTTCC 59.747 55.000 0.00 0.00 0.00 3.13
22 23 0.035439 GAAGACCCGCCTCATTTCCA 60.035 55.000 0.00 0.00 0.00 3.53
23 24 0.625849 AAGACCCGCCTCATTTCCAT 59.374 50.000 0.00 0.00 0.00 3.41
24 25 1.507140 AGACCCGCCTCATTTCCATA 58.493 50.000 0.00 0.00 0.00 2.74
25 26 2.057922 AGACCCGCCTCATTTCCATAT 58.942 47.619 0.00 0.00 0.00 1.78
26 27 2.443255 AGACCCGCCTCATTTCCATATT 59.557 45.455 0.00 0.00 0.00 1.28
27 28 3.650942 AGACCCGCCTCATTTCCATATTA 59.349 43.478 0.00 0.00 0.00 0.98
28 29 4.289672 AGACCCGCCTCATTTCCATATTAT 59.710 41.667 0.00 0.00 0.00 1.28
29 30 4.998051 ACCCGCCTCATTTCCATATTATT 58.002 39.130 0.00 0.00 0.00 1.40
30 31 4.766891 ACCCGCCTCATTTCCATATTATTG 59.233 41.667 0.00 0.00 0.00 1.90
31 32 5.009631 CCCGCCTCATTTCCATATTATTGA 58.990 41.667 0.00 0.00 0.00 2.57
32 33 5.476599 CCCGCCTCATTTCCATATTATTGAA 59.523 40.000 0.00 0.00 0.00 2.69
33 34 6.381801 CCGCCTCATTTCCATATTATTGAAC 58.618 40.000 0.00 0.00 0.00 3.18
34 35 6.207417 CCGCCTCATTTCCATATTATTGAACT 59.793 38.462 0.00 0.00 0.00 3.01
35 36 7.255590 CCGCCTCATTTCCATATTATTGAACTT 60.256 37.037 0.00 0.00 0.00 2.66
36 37 7.805071 CGCCTCATTTCCATATTATTGAACTTC 59.195 37.037 0.00 0.00 0.00 3.01
37 38 8.632679 GCCTCATTTCCATATTATTGAACTTCA 58.367 33.333 0.00 0.00 0.00 3.02
40 41 9.970395 TCATTTCCATATTATTGAACTTCATGC 57.030 29.630 0.00 0.00 0.00 4.06
41 42 9.199982 CATTTCCATATTATTGAACTTCATGCC 57.800 33.333 0.00 0.00 0.00 4.40
42 43 8.537728 TTTCCATATTATTGAACTTCATGCCT 57.462 30.769 0.00 0.00 0.00 4.75
43 44 8.537728 TTCCATATTATTGAACTTCATGCCTT 57.462 30.769 0.00 0.00 0.00 4.35
44 45 9.639563 TTCCATATTATTGAACTTCATGCCTTA 57.360 29.630 0.00 0.00 0.00 2.69
45 46 9.639563 TCCATATTATTGAACTTCATGCCTTAA 57.360 29.630 0.00 0.00 0.00 1.85
50 51 9.822185 ATTATTGAACTTCATGCCTTAAAATCC 57.178 29.630 0.00 0.00 0.00 3.01
51 52 5.659440 TGAACTTCATGCCTTAAAATCCC 57.341 39.130 0.00 0.00 0.00 3.85
52 53 4.466015 TGAACTTCATGCCTTAAAATCCCC 59.534 41.667 0.00 0.00 0.00 4.81
53 54 4.337264 ACTTCATGCCTTAAAATCCCCT 57.663 40.909 0.00 0.00 0.00 4.79
54 55 4.281657 ACTTCATGCCTTAAAATCCCCTC 58.718 43.478 0.00 0.00 0.00 4.30
55 56 2.930950 TCATGCCTTAAAATCCCCTCG 58.069 47.619 0.00 0.00 0.00 4.63
56 57 2.507886 TCATGCCTTAAAATCCCCTCGA 59.492 45.455 0.00 0.00 0.00 4.04
57 58 3.053991 TCATGCCTTAAAATCCCCTCGAA 60.054 43.478 0.00 0.00 0.00 3.71
58 59 3.662759 TGCCTTAAAATCCCCTCGAAT 57.337 42.857 0.00 0.00 0.00 3.34
59 60 3.287222 TGCCTTAAAATCCCCTCGAATG 58.713 45.455 0.00 0.00 0.00 2.67
60 61 2.623416 GCCTTAAAATCCCCTCGAATGG 59.377 50.000 0.00 0.00 0.00 3.16
61 62 3.687264 GCCTTAAAATCCCCTCGAATGGA 60.687 47.826 5.14 5.14 34.54 3.41
62 63 4.729868 CCTTAAAATCCCCTCGAATGGAT 58.270 43.478 9.10 9.10 43.23 3.41
63 64 4.520492 CCTTAAAATCCCCTCGAATGGATG 59.480 45.833 14.35 3.97 40.50 3.51
64 65 3.951563 AAAATCCCCTCGAATGGATGA 57.048 42.857 14.35 1.74 40.50 2.92
65 66 3.951563 AAATCCCCTCGAATGGATGAA 57.048 42.857 14.35 0.00 40.50 2.57
66 67 3.951563 AATCCCCTCGAATGGATGAAA 57.048 42.857 14.35 0.00 40.50 2.69
67 68 3.951563 ATCCCCTCGAATGGATGAAAA 57.048 42.857 13.18 0.00 39.89 2.29
68 69 3.730215 TCCCCTCGAATGGATGAAAAA 57.270 42.857 2.25 0.00 0.00 1.94
92 93 8.980481 AAATAGATTGAATAATTCACGGACCT 57.020 30.769 0.00 0.00 39.87 3.85
93 94 8.980481 AATAGATTGAATAATTCACGGACCTT 57.020 30.769 0.00 0.00 39.87 3.50
94 95 6.927294 AGATTGAATAATTCACGGACCTTC 57.073 37.500 0.00 0.00 39.87 3.46
95 96 6.653989 AGATTGAATAATTCACGGACCTTCT 58.346 36.000 0.00 0.00 39.87 2.85
96 97 6.763610 AGATTGAATAATTCACGGACCTTCTC 59.236 38.462 0.00 0.00 39.87 2.87
97 98 5.677319 TGAATAATTCACGGACCTTCTCT 57.323 39.130 0.00 0.00 34.08 3.10
98 99 5.419542 TGAATAATTCACGGACCTTCTCTG 58.580 41.667 0.00 0.00 34.08 3.35
99 100 2.770164 AATTCACGGACCTTCTCTGG 57.230 50.000 0.00 0.00 0.00 3.86
100 101 0.250513 ATTCACGGACCTTCTCTGGC 59.749 55.000 0.00 0.00 0.00 4.85
101 102 2.125912 CACGGACCTTCTCTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
102 103 2.600769 ACGGACCTTCTCTGGCGT 60.601 61.111 0.00 0.00 0.00 5.68
103 104 2.125912 CGGACCTTCTCTGGCGTG 60.126 66.667 0.00 0.00 0.00 5.34
104 105 2.435059 GGACCTTCTCTGGCGTGC 60.435 66.667 0.00 0.00 0.00 5.34
105 106 2.811317 GACCTTCTCTGGCGTGCG 60.811 66.667 0.00 0.00 0.00 5.34
106 107 3.282745 GACCTTCTCTGGCGTGCGA 62.283 63.158 0.00 0.00 0.00 5.10
107 108 2.185350 CCTTCTCTGGCGTGCGAT 59.815 61.111 0.00 0.00 0.00 4.58
108 109 2.169789 CCTTCTCTGGCGTGCGATG 61.170 63.158 0.00 0.00 0.00 3.84
109 110 1.153765 CTTCTCTGGCGTGCGATGA 60.154 57.895 0.00 0.00 0.00 2.92
110 111 1.416813 CTTCTCTGGCGTGCGATGAC 61.417 60.000 0.00 0.00 0.00 3.06
111 112 2.835701 TTCTCTGGCGTGCGATGACC 62.836 60.000 0.00 0.00 0.00 4.02
112 113 3.362399 CTCTGGCGTGCGATGACCT 62.362 63.158 0.00 0.00 0.00 3.85
113 114 2.004808 CTCTGGCGTGCGATGACCTA 62.005 60.000 0.00 0.00 0.00 3.08
114 115 1.153647 CTGGCGTGCGATGACCTAA 60.154 57.895 0.00 0.00 0.00 2.69
115 116 0.530650 CTGGCGTGCGATGACCTAAT 60.531 55.000 0.00 0.00 0.00 1.73
116 117 0.747852 TGGCGTGCGATGACCTAATA 59.252 50.000 0.00 0.00 0.00 0.98
117 118 1.137282 TGGCGTGCGATGACCTAATAA 59.863 47.619 0.00 0.00 0.00 1.40
118 119 2.206750 GGCGTGCGATGACCTAATAAA 58.793 47.619 0.00 0.00 0.00 1.40
119 120 2.610374 GGCGTGCGATGACCTAATAAAA 59.390 45.455 0.00 0.00 0.00 1.52
120 121 3.545426 GGCGTGCGATGACCTAATAAAAC 60.545 47.826 0.00 0.00 0.00 2.43
121 122 3.308866 GCGTGCGATGACCTAATAAAACT 59.691 43.478 0.00 0.00 0.00 2.66
122 123 4.550255 GCGTGCGATGACCTAATAAAACTC 60.550 45.833 0.00 0.00 0.00 3.01
123 124 4.804139 CGTGCGATGACCTAATAAAACTCT 59.196 41.667 0.00 0.00 0.00 3.24
124 125 5.291128 CGTGCGATGACCTAATAAAACTCTT 59.709 40.000 0.00 0.00 0.00 2.85
125 126 6.474427 CGTGCGATGACCTAATAAAACTCTTA 59.526 38.462 0.00 0.00 0.00 2.10
126 127 7.009815 CGTGCGATGACCTAATAAAACTCTTAA 59.990 37.037 0.00 0.00 0.00 1.85
127 128 8.662141 GTGCGATGACCTAATAAAACTCTTAAA 58.338 33.333 0.00 0.00 0.00 1.52
128 129 9.391006 TGCGATGACCTAATAAAACTCTTAAAT 57.609 29.630 0.00 0.00 0.00 1.40
129 130 9.865484 GCGATGACCTAATAAAACTCTTAAATC 57.135 33.333 0.00 0.00 0.00 2.17
135 136 9.379791 ACCTAATAAAACTCTTAAATCCACTCG 57.620 33.333 0.00 0.00 0.00 4.18
136 137 9.595823 CCTAATAAAACTCTTAAATCCACTCGA 57.404 33.333 0.00 0.00 0.00 4.04
139 140 9.667107 AATAAAACTCTTAAATCCACTCGATCA 57.333 29.630 0.00 0.00 0.00 2.92
140 141 7.979444 AAAACTCTTAAATCCACTCGATCAA 57.021 32.000 0.00 0.00 0.00 2.57
141 142 8.567285 AAAACTCTTAAATCCACTCGATCAAT 57.433 30.769 0.00 0.00 0.00 2.57
142 143 7.545362 AACTCTTAAATCCACTCGATCAATG 57.455 36.000 0.00 0.00 0.00 2.82
143 144 6.878317 ACTCTTAAATCCACTCGATCAATGA 58.122 36.000 0.00 0.00 0.00 2.57
144 145 7.331026 ACTCTTAAATCCACTCGATCAATGAA 58.669 34.615 0.00 0.00 0.00 2.57
145 146 7.989741 ACTCTTAAATCCACTCGATCAATGAAT 59.010 33.333 0.00 0.00 0.00 2.57
146 147 8.146479 TCTTAAATCCACTCGATCAATGAATG 57.854 34.615 0.00 0.00 0.00 2.67
147 148 7.986889 TCTTAAATCCACTCGATCAATGAATGA 59.013 33.333 0.00 0.00 43.67 2.57
148 149 8.504812 TTAAATCCACTCGATCAATGAATGAA 57.495 30.769 0.00 0.00 42.54 2.57
149 150 7.395190 AAATCCACTCGATCAATGAATGAAA 57.605 32.000 0.00 0.00 42.54 2.69
150 151 7.395190 AATCCACTCGATCAATGAATGAAAA 57.605 32.000 0.00 0.00 42.54 2.29
151 152 6.816134 TCCACTCGATCAATGAATGAAAAA 57.184 33.333 0.00 0.00 42.54 1.94
174 175 7.624360 AAAATAGCGGATTGATTACTTCACA 57.376 32.000 0.00 0.00 32.84 3.58
175 176 6.604735 AATAGCGGATTGATTACTTCACAC 57.395 37.500 0.00 0.00 32.84 3.82
176 177 2.930040 AGCGGATTGATTACTTCACACG 59.070 45.455 0.00 0.00 32.84 4.49
177 178 2.536928 GCGGATTGATTACTTCACACGC 60.537 50.000 0.00 0.00 40.96 5.34
178 179 2.285026 CGGATTGATTACTTCACACGCG 60.285 50.000 3.53 3.53 32.84 6.01
179 180 2.030457 GGATTGATTACTTCACACGCGG 59.970 50.000 12.47 1.27 32.84 6.46
180 181 0.793861 TTGATTACTTCACACGCGGC 59.206 50.000 12.47 0.00 32.84 6.53
181 182 1.343821 GATTACTTCACACGCGGCG 59.656 57.895 22.36 22.36 0.00 6.46
182 183 1.074319 GATTACTTCACACGCGGCGA 61.074 55.000 30.94 2.76 0.00 5.54
183 184 0.668096 ATTACTTCACACGCGGCGAA 60.668 50.000 30.94 11.79 0.00 4.70
184 185 0.875040 TTACTTCACACGCGGCGAAA 60.875 50.000 30.94 15.30 0.00 3.46
185 186 1.550659 TACTTCACACGCGGCGAAAC 61.551 55.000 30.94 0.00 0.00 2.78
186 187 3.573489 CTTCACACGCGGCGAAACC 62.573 63.158 30.94 0.00 0.00 3.27
190 191 2.816083 CACGCGGCGAAACCCATA 60.816 61.111 30.94 0.00 33.26 2.74
191 192 2.047083 ACGCGGCGAAACCCATAA 60.047 55.556 30.94 0.00 33.26 1.90
192 193 2.392974 ACGCGGCGAAACCCATAAC 61.393 57.895 30.94 0.00 33.26 1.89
193 194 2.795973 GCGGCGAAACCCATAACC 59.204 61.111 12.98 0.00 33.26 2.85
194 195 2.041686 GCGGCGAAACCCATAACCA 61.042 57.895 12.98 0.00 33.26 3.67
195 196 1.587933 GCGGCGAAACCCATAACCAA 61.588 55.000 12.98 0.00 33.26 3.67
196 197 0.882474 CGGCGAAACCCATAACCAAA 59.118 50.000 0.00 0.00 33.26 3.28
197 198 1.269998 CGGCGAAACCCATAACCAAAA 59.730 47.619 0.00 0.00 33.26 2.44
198 199 2.094442 CGGCGAAACCCATAACCAAAAT 60.094 45.455 0.00 0.00 33.26 1.82
199 200 3.258228 GGCGAAACCCATAACCAAAATG 58.742 45.455 0.00 0.00 0.00 2.32
200 201 3.306433 GGCGAAACCCATAACCAAAATGT 60.306 43.478 0.00 0.00 0.00 2.71
201 202 4.311606 GCGAAACCCATAACCAAAATGTT 58.688 39.130 0.00 0.00 0.00 2.71
202 203 4.387559 GCGAAACCCATAACCAAAATGTTC 59.612 41.667 0.00 0.00 0.00 3.18
203 204 4.926832 CGAAACCCATAACCAAAATGTTCC 59.073 41.667 0.00 0.00 0.00 3.62
204 205 5.279256 CGAAACCCATAACCAAAATGTTCCT 60.279 40.000 0.00 0.00 0.00 3.36
205 206 6.508030 AAACCCATAACCAAAATGTTCCTT 57.492 33.333 0.00 0.00 0.00 3.36
206 207 5.738619 ACCCATAACCAAAATGTTCCTTC 57.261 39.130 0.00 0.00 0.00 3.46
207 208 5.402630 ACCCATAACCAAAATGTTCCTTCT 58.597 37.500 0.00 0.00 0.00 2.85
208 209 5.843969 ACCCATAACCAAAATGTTCCTTCTT 59.156 36.000 0.00 0.00 0.00 2.52
209 210 6.165577 CCCATAACCAAAATGTTCCTTCTTG 58.834 40.000 0.00 0.00 0.00 3.02
210 211 5.639082 CCATAACCAAAATGTTCCTTCTTGC 59.361 40.000 0.00 0.00 0.00 4.01
211 212 4.751767 AACCAAAATGTTCCTTCTTGCA 57.248 36.364 0.00 0.00 0.00 4.08
212 213 4.058721 ACCAAAATGTTCCTTCTTGCAC 57.941 40.909 0.00 0.00 0.00 4.57
213 214 3.450457 ACCAAAATGTTCCTTCTTGCACA 59.550 39.130 0.00 0.00 0.00 4.57
214 215 3.803778 CCAAAATGTTCCTTCTTGCACAC 59.196 43.478 0.00 0.00 0.00 3.82
215 216 4.431809 CAAAATGTTCCTTCTTGCACACA 58.568 39.130 0.00 0.00 0.00 3.72
216 217 3.996150 AATGTTCCTTCTTGCACACAG 57.004 42.857 0.00 0.00 0.00 3.66
217 218 1.679139 TGTTCCTTCTTGCACACAGG 58.321 50.000 0.00 0.00 0.00 4.00
218 219 0.954452 GTTCCTTCTTGCACACAGGG 59.046 55.000 4.73 0.00 0.00 4.45
219 220 0.550914 TTCCTTCTTGCACACAGGGT 59.449 50.000 4.73 0.00 0.00 4.34
220 221 0.550914 TCCTTCTTGCACACAGGGTT 59.449 50.000 4.73 0.00 0.00 4.11
221 222 1.064017 TCCTTCTTGCACACAGGGTTT 60.064 47.619 4.73 0.00 0.00 3.27
222 223 1.756538 CCTTCTTGCACACAGGGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
223 224 2.168313 CCTTCTTGCACACAGGGTTTTT 59.832 45.455 0.00 0.00 0.00 1.94
224 225 3.447742 CTTCTTGCACACAGGGTTTTTC 58.552 45.455 0.00 0.00 0.00 2.29
225 226 2.733956 TCTTGCACACAGGGTTTTTCT 58.266 42.857 0.00 0.00 0.00 2.52
226 227 3.096092 TCTTGCACACAGGGTTTTTCTT 58.904 40.909 0.00 0.00 0.00 2.52
227 228 2.957491 TGCACACAGGGTTTTTCTTG 57.043 45.000 0.00 0.00 0.00 3.02
228 229 1.134848 TGCACACAGGGTTTTTCTTGC 60.135 47.619 0.00 0.00 0.00 4.01
229 230 1.134848 GCACACAGGGTTTTTCTTGCA 60.135 47.619 0.00 0.00 0.00 4.08
230 231 2.539476 CACACAGGGTTTTTCTTGCAC 58.461 47.619 0.00 0.00 0.00 4.57
231 232 1.134175 ACACAGGGTTTTTCTTGCACG 59.866 47.619 0.00 0.00 0.00 5.34
232 233 1.134175 CACAGGGTTTTTCTTGCACGT 59.866 47.619 0.00 0.00 0.00 4.49
233 234 2.356382 CACAGGGTTTTTCTTGCACGTA 59.644 45.455 0.00 0.00 0.00 3.57
234 235 3.004315 CACAGGGTTTTTCTTGCACGTAT 59.996 43.478 0.00 0.00 0.00 3.06
235 236 4.214545 CACAGGGTTTTTCTTGCACGTATA 59.785 41.667 0.00 0.00 0.00 1.47
236 237 4.822896 ACAGGGTTTTTCTTGCACGTATAA 59.177 37.500 0.00 0.00 0.00 0.98
237 238 5.475564 ACAGGGTTTTTCTTGCACGTATAAT 59.524 36.000 0.00 0.00 0.00 1.28
238 239 6.015772 ACAGGGTTTTTCTTGCACGTATAATT 60.016 34.615 0.00 0.00 0.00 1.40
239 240 6.526674 CAGGGTTTTTCTTGCACGTATAATTC 59.473 38.462 0.00 0.00 0.00 2.17
240 241 6.433093 AGGGTTTTTCTTGCACGTATAATTCT 59.567 34.615 0.00 0.00 0.00 2.40
241 242 6.745907 GGGTTTTTCTTGCACGTATAATTCTC 59.254 38.462 0.00 0.00 0.00 2.87
242 243 7.302524 GGTTTTTCTTGCACGTATAATTCTCA 58.697 34.615 0.00 0.00 0.00 3.27
243 244 7.270579 GGTTTTTCTTGCACGTATAATTCTCAC 59.729 37.037 0.00 0.00 0.00 3.51
244 245 7.667043 TTTTCTTGCACGTATAATTCTCACT 57.333 32.000 0.00 0.00 0.00 3.41
245 246 6.647212 TTCTTGCACGTATAATTCTCACTG 57.353 37.500 0.00 0.00 0.00 3.66
246 247 4.566759 TCTTGCACGTATAATTCTCACTGC 59.433 41.667 0.00 0.00 0.00 4.40
247 248 3.855858 TGCACGTATAATTCTCACTGCA 58.144 40.909 0.00 0.00 0.00 4.41
248 249 3.616821 TGCACGTATAATTCTCACTGCAC 59.383 43.478 0.00 0.00 0.00 4.57
249 250 3.865745 GCACGTATAATTCTCACTGCACT 59.134 43.478 0.00 0.00 0.00 4.40
250 251 5.041287 GCACGTATAATTCTCACTGCACTA 58.959 41.667 0.00 0.00 0.00 2.74
251 252 5.518847 GCACGTATAATTCTCACTGCACTAA 59.481 40.000 0.00 0.00 0.00 2.24
252 253 6.291849 GCACGTATAATTCTCACTGCACTAAG 60.292 42.308 0.00 0.00 0.00 2.18
253 254 6.752351 CACGTATAATTCTCACTGCACTAAGT 59.248 38.462 0.00 0.00 0.00 2.24
269 270 6.204075 CACTAAGTGCGCACTATAATTCTC 57.796 41.667 40.76 11.50 41.58 2.87
270 271 5.748630 CACTAAGTGCGCACTATAATTCTCA 59.251 40.000 40.76 16.83 41.58 3.27
271 272 5.749109 ACTAAGTGCGCACTATAATTCTCAC 59.251 40.000 40.76 10.71 41.58 3.51
272 273 4.392921 AGTGCGCACTATAATTCTCACT 57.607 40.909 40.15 12.93 40.43 3.41
273 274 4.115516 AGTGCGCACTATAATTCTCACTG 58.884 43.478 40.15 0.00 40.43 3.66
274 275 2.866156 TGCGCACTATAATTCTCACTGC 59.134 45.455 5.66 0.00 0.00 4.40
275 276 2.866156 GCGCACTATAATTCTCACTGCA 59.134 45.455 0.30 0.00 0.00 4.41
276 277 3.302740 GCGCACTATAATTCTCACTGCAC 60.303 47.826 0.30 0.00 0.00 4.57
277 278 4.115516 CGCACTATAATTCTCACTGCACT 58.884 43.478 0.00 0.00 0.00 4.40
278 279 5.281727 CGCACTATAATTCTCACTGCACTA 58.718 41.667 0.00 0.00 0.00 2.74
279 280 5.748630 CGCACTATAATTCTCACTGCACTAA 59.251 40.000 0.00 0.00 0.00 2.24
280 281 6.074623 CGCACTATAATTCTCACTGCACTAAG 60.075 42.308 0.00 0.00 0.00 2.18
281 282 6.758886 GCACTATAATTCTCACTGCACTAAGT 59.241 38.462 0.00 0.00 0.00 2.24
282 283 7.278868 GCACTATAATTCTCACTGCACTAAGTT 59.721 37.037 0.00 0.00 0.00 2.66
283 284 9.155975 CACTATAATTCTCACTGCACTAAGTTT 57.844 33.333 0.00 0.00 0.00 2.66
284 285 9.155975 ACTATAATTCTCACTGCACTAAGTTTG 57.844 33.333 0.00 0.00 0.00 2.93
285 286 9.371136 CTATAATTCTCACTGCACTAAGTTTGA 57.629 33.333 0.00 0.00 0.00 2.69
286 287 5.931441 ATTCTCACTGCACTAAGTTTGAC 57.069 39.130 0.00 0.00 0.00 3.18
287 288 3.728845 TCTCACTGCACTAAGTTTGACC 58.271 45.455 0.00 0.00 0.00 4.02
288 289 3.133901 TCTCACTGCACTAAGTTTGACCA 59.866 43.478 0.00 0.00 0.00 4.02
289 290 4.067896 CTCACTGCACTAAGTTTGACCAT 58.932 43.478 0.00 0.00 0.00 3.55
290 291 3.814842 TCACTGCACTAAGTTTGACCATG 59.185 43.478 0.00 0.00 0.00 3.66
291 292 3.814842 CACTGCACTAAGTTTGACCATGA 59.185 43.478 0.00 0.00 0.00 3.07
292 293 4.275689 CACTGCACTAAGTTTGACCATGAA 59.724 41.667 0.00 0.00 0.00 2.57
293 294 5.048504 CACTGCACTAAGTTTGACCATGAAT 60.049 40.000 0.00 0.00 0.00 2.57
294 295 5.536161 ACTGCACTAAGTTTGACCATGAATT 59.464 36.000 0.00 0.00 0.00 2.17
295 296 6.040842 ACTGCACTAAGTTTGACCATGAATTT 59.959 34.615 0.00 0.00 0.00 1.82
296 297 7.230510 ACTGCACTAAGTTTGACCATGAATTTA 59.769 33.333 0.00 0.00 0.00 1.40
297 298 7.946207 TGCACTAAGTTTGACCATGAATTTAA 58.054 30.769 0.00 0.00 0.00 1.52
298 299 8.584157 TGCACTAAGTTTGACCATGAATTTAAT 58.416 29.630 0.00 0.00 0.00 1.40
299 300 9.423061 GCACTAAGTTTGACCATGAATTTAATT 57.577 29.630 0.00 0.00 0.00 1.40
379 380 7.763172 AGTCAAATTTTGCACAAAATACGAA 57.237 28.000 18.82 5.71 46.76 3.85
380 381 7.840489 AGTCAAATTTTGCACAAAATACGAAG 58.160 30.769 18.82 9.43 46.76 3.79
381 382 7.704472 AGTCAAATTTTGCACAAAATACGAAGA 59.296 29.630 18.82 11.08 46.76 2.87
382 383 8.487176 GTCAAATTTTGCACAAAATACGAAGAT 58.513 29.630 18.82 2.34 46.76 2.40
383 384 8.486383 TCAAATTTTGCACAAAATACGAAGATG 58.514 29.630 18.82 10.85 46.76 2.90
384 385 8.486383 CAAATTTTGCACAAAATACGAAGATGA 58.514 29.630 18.82 0.00 46.76 2.92
385 386 6.984740 TTTTGCACAAAATACGAAGATGAC 57.015 33.333 4.47 0.00 35.57 3.06
386 387 4.678509 TGCACAAAATACGAAGATGACC 57.321 40.909 0.00 0.00 0.00 4.02
387 388 4.068599 TGCACAAAATACGAAGATGACCA 58.931 39.130 0.00 0.00 0.00 4.02
388 389 4.517075 TGCACAAAATACGAAGATGACCAA 59.483 37.500 0.00 0.00 0.00 3.67
389 390 5.182950 TGCACAAAATACGAAGATGACCAAT 59.817 36.000 0.00 0.00 0.00 3.16
390 391 6.372937 TGCACAAAATACGAAGATGACCAATA 59.627 34.615 0.00 0.00 0.00 1.90
391 392 7.094592 TGCACAAAATACGAAGATGACCAATAA 60.095 33.333 0.00 0.00 0.00 1.40
392 393 7.753132 GCACAAAATACGAAGATGACCAATAAA 59.247 33.333 0.00 0.00 0.00 1.40
393 394 9.061610 CACAAAATACGAAGATGACCAATAAAC 57.938 33.333 0.00 0.00 0.00 2.01
394 395 9.010029 ACAAAATACGAAGATGACCAATAAACT 57.990 29.630 0.00 0.00 0.00 2.66
397 398 8.888579 AATACGAAGATGACCAATAAACTAGG 57.111 34.615 0.00 0.00 0.00 3.02
398 399 6.540438 ACGAAGATGACCAATAAACTAGGA 57.460 37.500 0.00 0.00 0.00 2.94
399 400 6.338937 ACGAAGATGACCAATAAACTAGGAC 58.661 40.000 0.00 0.00 0.00 3.85
400 401 6.070995 ACGAAGATGACCAATAAACTAGGACA 60.071 38.462 0.00 0.00 0.00 4.02
401 402 6.477033 CGAAGATGACCAATAAACTAGGACAG 59.523 42.308 0.00 0.00 31.16 3.51
402 403 7.496346 AAGATGACCAATAAACTAGGACAGA 57.504 36.000 0.00 0.00 31.16 3.41
403 404 7.118496 AGATGACCAATAAACTAGGACAGAG 57.882 40.000 0.00 0.00 31.16 3.35
404 405 5.677319 TGACCAATAAACTAGGACAGAGG 57.323 43.478 0.00 0.00 0.00 3.69
405 406 5.091552 TGACCAATAAACTAGGACAGAGGT 58.908 41.667 0.00 0.00 0.00 3.85
406 407 6.258354 TGACCAATAAACTAGGACAGAGGTA 58.742 40.000 0.00 0.00 0.00 3.08
407 408 6.380274 TGACCAATAAACTAGGACAGAGGTAG 59.620 42.308 0.00 0.00 0.00 3.18
408 409 6.262207 ACCAATAAACTAGGACAGAGGTAGT 58.738 40.000 0.00 0.00 0.00 2.73
409 410 7.416731 ACCAATAAACTAGGACAGAGGTAGTA 58.583 38.462 0.00 0.00 0.00 1.82
410 411 7.897565 ACCAATAAACTAGGACAGAGGTAGTAA 59.102 37.037 0.00 0.00 0.00 2.24
411 412 8.414778 CCAATAAACTAGGACAGAGGTAGTAAG 58.585 40.741 0.00 0.00 0.00 2.34
412 413 9.186837 CAATAAACTAGGACAGAGGTAGTAAGA 57.813 37.037 0.00 0.00 0.00 2.10
413 414 9.939424 AATAAACTAGGACAGAGGTAGTAAGAT 57.061 33.333 0.00 0.00 0.00 2.40
414 415 7.648039 AAACTAGGACAGAGGTAGTAAGATG 57.352 40.000 0.00 0.00 0.00 2.90
415 416 5.134661 ACTAGGACAGAGGTAGTAAGATGC 58.865 45.833 0.00 0.00 0.00 3.91
416 417 3.982516 AGGACAGAGGTAGTAAGATGCA 58.017 45.455 0.00 0.00 0.00 3.96
417 418 4.353777 AGGACAGAGGTAGTAAGATGCAA 58.646 43.478 0.00 0.00 0.00 4.08
418 419 4.965532 AGGACAGAGGTAGTAAGATGCAAT 59.034 41.667 0.00 0.00 0.00 3.56
419 420 5.053145 GGACAGAGGTAGTAAGATGCAATG 58.947 45.833 0.00 0.00 0.00 2.82
420 421 5.395768 GGACAGAGGTAGTAAGATGCAATGT 60.396 44.000 0.00 0.00 0.00 2.71
421 422 6.054860 ACAGAGGTAGTAAGATGCAATGTT 57.945 37.500 0.00 0.00 32.89 2.71
422 423 6.109359 ACAGAGGTAGTAAGATGCAATGTTC 58.891 40.000 0.00 0.00 29.89 3.18
423 424 6.070538 ACAGAGGTAGTAAGATGCAATGTTCT 60.071 38.462 0.00 0.00 29.89 3.01
424 425 6.478344 CAGAGGTAGTAAGATGCAATGTTCTC 59.522 42.308 0.00 0.00 29.89 2.87
425 426 5.352284 AGGTAGTAAGATGCAATGTTCTCG 58.648 41.667 0.00 0.00 29.89 4.04
426 427 4.025647 GGTAGTAAGATGCAATGTTCTCGC 60.026 45.833 0.00 0.00 29.89 5.03
427 428 2.939103 AGTAAGATGCAATGTTCTCGCC 59.061 45.455 0.00 0.00 29.89 5.54
428 429 0.729116 AAGATGCAATGTTCTCGCCG 59.271 50.000 0.00 0.00 0.00 6.46
429 430 1.297893 GATGCAATGTTCTCGCCGC 60.298 57.895 0.00 0.00 0.00 6.53
430 431 1.709147 GATGCAATGTTCTCGCCGCT 61.709 55.000 0.00 0.00 0.00 5.52
431 432 1.709147 ATGCAATGTTCTCGCCGCTC 61.709 55.000 0.00 0.00 0.00 5.03
432 433 2.697425 CAATGTTCTCGCCGCTCG 59.303 61.111 0.00 0.00 40.15 5.03
433 434 1.805539 CAATGTTCTCGCCGCTCGA 60.806 57.895 0.00 0.00 46.29 4.04
453 454 6.912203 TCGAGAGAGAGTATACTGACAAAG 57.088 41.667 10.90 0.00 34.84 2.77
454 455 5.818336 TCGAGAGAGAGTATACTGACAAAGG 59.182 44.000 10.90 0.00 34.84 3.11
455 456 5.504994 CGAGAGAGAGTATACTGACAAAGGC 60.505 48.000 10.90 0.00 0.00 4.35
456 457 5.265191 AGAGAGAGTATACTGACAAAGGCA 58.735 41.667 10.90 0.00 0.00 4.75
457 458 5.896678 AGAGAGAGTATACTGACAAAGGCAT 59.103 40.000 10.90 0.00 0.00 4.40
458 459 7.063593 AGAGAGAGTATACTGACAAAGGCATA 58.936 38.462 10.90 0.00 0.00 3.14
459 460 7.561722 AGAGAGAGTATACTGACAAAGGCATAA 59.438 37.037 10.90 0.00 0.00 1.90
460 461 8.079211 AGAGAGTATACTGACAAAGGCATAAA 57.921 34.615 10.90 0.00 0.00 1.40
461 462 8.540388 AGAGAGTATACTGACAAAGGCATAAAA 58.460 33.333 10.90 0.00 0.00 1.52
462 463 9.162764 GAGAGTATACTGACAAAGGCATAAAAA 57.837 33.333 10.90 0.00 0.00 1.94
463 464 8.947115 AGAGTATACTGACAAAGGCATAAAAAC 58.053 33.333 10.90 0.00 0.00 2.43
464 465 8.051901 AGTATACTGACAAAGGCATAAAAACC 57.948 34.615 4.10 0.00 0.00 3.27
465 466 6.909550 ATACTGACAAAGGCATAAAAACCA 57.090 33.333 0.00 0.00 0.00 3.67
466 467 5.606348 ACTGACAAAGGCATAAAAACCAA 57.394 34.783 0.00 0.00 0.00 3.67
467 468 5.600696 ACTGACAAAGGCATAAAAACCAAG 58.399 37.500 0.00 0.00 0.00 3.61
468 469 5.362430 ACTGACAAAGGCATAAAAACCAAGA 59.638 36.000 0.00 0.00 0.00 3.02
469 470 6.127196 ACTGACAAAGGCATAAAAACCAAGAA 60.127 34.615 0.00 0.00 0.00 2.52
470 471 6.045955 TGACAAAGGCATAAAAACCAAGAAC 58.954 36.000 0.00 0.00 0.00 3.01
471 472 5.364778 ACAAAGGCATAAAAACCAAGAACC 58.635 37.500 0.00 0.00 0.00 3.62
472 473 5.104735 ACAAAGGCATAAAAACCAAGAACCA 60.105 36.000 0.00 0.00 0.00 3.67
473 474 5.622346 AAGGCATAAAAACCAAGAACCAA 57.378 34.783 0.00 0.00 0.00 3.67
474 475 5.622346 AGGCATAAAAACCAAGAACCAAA 57.378 34.783 0.00 0.00 0.00 3.28
475 476 6.186420 AGGCATAAAAACCAAGAACCAAAT 57.814 33.333 0.00 0.00 0.00 2.32
476 477 6.600388 AGGCATAAAAACCAAGAACCAAATT 58.400 32.000 0.00 0.00 0.00 1.82
477 478 7.740805 AGGCATAAAAACCAAGAACCAAATTA 58.259 30.769 0.00 0.00 0.00 1.40
478 479 8.214364 AGGCATAAAAACCAAGAACCAAATTAA 58.786 29.630 0.00 0.00 0.00 1.40
479 480 8.841300 GGCATAAAAACCAAGAACCAAATTAAA 58.159 29.630 0.00 0.00 0.00 1.52
485 486 9.508642 AAAACCAAGAACCAAATTAAAACAAGA 57.491 25.926 0.00 0.00 0.00 3.02
486 487 9.508642 AAACCAAGAACCAAATTAAAACAAGAA 57.491 25.926 0.00 0.00 0.00 2.52
487 488 9.508642 AACCAAGAACCAAATTAAAACAAGAAA 57.491 25.926 0.00 0.00 0.00 2.52
488 489 9.508642 ACCAAGAACCAAATTAAAACAAGAAAA 57.491 25.926 0.00 0.00 0.00 2.29
534 535 8.458573 AAACAAAATAGAATTTTGAAACCCCC 57.541 30.769 24.45 0.00 40.73 5.40
556 557 8.457238 CCCCCAAAAATGAAAAACTATGAAAA 57.543 30.769 0.00 0.00 0.00 2.29
557 558 8.349245 CCCCCAAAAATGAAAAACTATGAAAAC 58.651 33.333 0.00 0.00 0.00 2.43
558 559 9.119418 CCCCAAAAATGAAAAACTATGAAAACT 57.881 29.630 0.00 0.00 0.00 2.66
576 577 7.422399 TGAAAACTAATCGAAAGGAAAAGTGG 58.578 34.615 0.00 0.00 0.00 4.00
577 578 7.283580 TGAAAACTAATCGAAAGGAAAAGTGGA 59.716 33.333 0.00 0.00 0.00 4.02
578 579 6.555812 AACTAATCGAAAGGAAAAGTGGAC 57.444 37.500 0.00 0.00 0.00 4.02
579 580 5.617252 ACTAATCGAAAGGAAAAGTGGACA 58.383 37.500 0.00 0.00 0.00 4.02
580 581 6.059484 ACTAATCGAAAGGAAAAGTGGACAA 58.941 36.000 0.00 0.00 0.00 3.18
581 582 5.845391 AATCGAAAGGAAAAGTGGACAAA 57.155 34.783 0.00 0.00 0.00 2.83
582 583 5.845391 ATCGAAAGGAAAAGTGGACAAAA 57.155 34.783 0.00 0.00 0.00 2.44
583 584 5.845391 TCGAAAGGAAAAGTGGACAAAAT 57.155 34.783 0.00 0.00 0.00 1.82
584 585 5.587289 TCGAAAGGAAAAGTGGACAAAATG 58.413 37.500 0.00 0.00 0.00 2.32
585 586 5.358442 TCGAAAGGAAAAGTGGACAAAATGA 59.642 36.000 0.00 0.00 0.00 2.57
586 587 6.039616 CGAAAGGAAAAGTGGACAAAATGAA 58.960 36.000 0.00 0.00 0.00 2.57
587 588 6.701400 CGAAAGGAAAAGTGGACAAAATGAAT 59.299 34.615 0.00 0.00 0.00 2.57
588 589 7.224557 CGAAAGGAAAAGTGGACAAAATGAATT 59.775 33.333 0.00 0.00 0.00 2.17
589 590 8.806429 AAAGGAAAAGTGGACAAAATGAATTT 57.194 26.923 0.00 0.00 0.00 1.82
590 591 8.806429 AAGGAAAAGTGGACAAAATGAATTTT 57.194 26.923 0.00 0.00 40.37 1.82
591 592 9.898152 AAGGAAAAGTGGACAAAATGAATTTTA 57.102 25.926 0.86 0.00 37.86 1.52
592 593 9.898152 AGGAAAAGTGGACAAAATGAATTTTAA 57.102 25.926 0.86 0.00 37.86 1.52
673 678 7.723616 AGGGGGAAAACAAAATCAATTTTTAGG 59.276 33.333 0.00 0.00 37.86 2.69
719 724 2.144482 CAGCTTTTGTTCTTGCTGGG 57.856 50.000 5.98 0.00 46.24 4.45
722 727 0.752054 CTTTTGTTCTTGCTGGGCCA 59.248 50.000 5.85 5.85 0.00 5.36
748 761 0.396417 TGTGGGTTTGGTGGTCTTGG 60.396 55.000 0.00 0.00 0.00 3.61
749 762 1.112916 GTGGGTTTGGTGGTCTTGGG 61.113 60.000 0.00 0.00 0.00 4.12
750 763 1.231928 GGGTTTGGTGGTCTTGGGT 59.768 57.895 0.00 0.00 0.00 4.51
751 764 1.112916 GGGTTTGGTGGTCTTGGGTG 61.113 60.000 0.00 0.00 0.00 4.61
752 765 1.739667 GTTTGGTGGTCTTGGGTGC 59.260 57.895 0.00 0.00 0.00 5.01
753 766 1.826054 TTTGGTGGTCTTGGGTGCG 60.826 57.895 0.00 0.00 0.00 5.34
754 767 2.272230 TTTGGTGGTCTTGGGTGCGA 62.272 55.000 0.00 0.00 0.00 5.10
755 768 2.358737 GGTGGTCTTGGGTGCGAG 60.359 66.667 0.00 0.00 0.00 5.03
756 769 3.050275 GTGGTCTTGGGTGCGAGC 61.050 66.667 0.00 0.00 0.00 5.03
757 770 4.329545 TGGTCTTGGGTGCGAGCC 62.330 66.667 0.00 0.00 36.00 4.70
790 803 3.073062 TGGGCTGTAGCTCTTTTTCTCTT 59.927 43.478 5.22 0.00 43.37 2.85
814 827 4.307432 TCTCTCGAAAAATCACCACTGTC 58.693 43.478 0.00 0.00 0.00 3.51
828 841 5.127845 TCACCACTGTCTCATCTCCTTATTC 59.872 44.000 0.00 0.00 0.00 1.75
829 842 4.098654 ACCACTGTCTCATCTCCTTATTCG 59.901 45.833 0.00 0.00 0.00 3.34
830 843 4.098654 CCACTGTCTCATCTCCTTATTCGT 59.901 45.833 0.00 0.00 0.00 3.85
841 856 4.161754 TCTCCTTATTCGTTCCCCTTCTTC 59.838 45.833 0.00 0.00 0.00 2.87
852 870 0.692756 CCCTTCTTCCTCCTCCTCCC 60.693 65.000 0.00 0.00 0.00 4.30
855 874 1.460839 TTCTTCCTCCTCCTCCCCCA 61.461 60.000 0.00 0.00 0.00 4.96
859 878 4.024984 CTCCTCCTCCCCCACCCA 62.025 72.222 0.00 0.00 0.00 4.51
866 885 1.000896 CTCCCCCACCCACATTGTC 60.001 63.158 0.00 0.00 0.00 3.18
893 912 2.969628 ACCCTAGCAGATCAGTAGCAT 58.030 47.619 0.00 0.00 0.00 3.79
926 945 3.831883 CCATCAATCCGTGCTGGG 58.168 61.111 0.00 0.00 39.47 4.45
928 947 2.124151 ATCAATCCGTGCTGGGGC 60.124 61.111 0.00 0.00 38.76 5.80
1086 1106 3.181485 GGTACCACCTTCTCAAGATCGAG 60.181 52.174 7.15 0.00 34.73 4.04
1268 1288 4.389576 GGCAGTGAAGGCGCAACG 62.390 66.667 10.83 0.07 0.00 4.10
1326 1349 1.393539 CCTTCGCTGGTATCAACAACG 59.606 52.381 0.00 0.00 0.00 4.10
1351 1374 2.029560 CACAGCTACAGTTCTCAGCAGA 60.030 50.000 0.00 0.00 37.78 4.26
1364 1387 3.012153 AGCAGAGCTGGGGATACAA 57.988 52.632 0.00 0.00 37.57 2.41
1518 1541 0.915872 TCACTGTGGCCCCATCTGAT 60.916 55.000 8.11 0.00 0.00 2.90
1608 1642 2.972505 ACTTTCGCTGCACACCGG 60.973 61.111 0.00 0.00 0.00 5.28
1625 1670 3.218470 GTGTGTGCTTGCTGCCCA 61.218 61.111 0.00 0.00 42.00 5.36
1671 1716 1.295020 TTGGTGGTATGAAGGAGGGG 58.705 55.000 0.00 0.00 0.00 4.79
1677 1722 0.464452 GTATGAAGGAGGGGGACACG 59.536 60.000 0.00 0.00 0.00 4.49
1889 1940 5.945784 AGTACATCAACACAGGCACAATAAT 59.054 36.000 0.00 0.00 0.00 1.28
1901 1952 5.301045 CAGGCACAATAATGAACATCCTGAT 59.699 40.000 9.39 0.00 40.58 2.90
1969 2020 3.894547 TTTCTTCGCTCCCCGGCAC 62.895 63.158 0.00 0.00 37.59 5.01
1998 2049 2.142357 CTCTGTTGGACAGCGACGGA 62.142 60.000 3.26 0.00 45.54 4.69
2069 2120 2.104111 CCATGTCGGCCCTCATTTAGTA 59.896 50.000 0.00 0.00 0.00 1.82
2103 2156 6.601332 TCTTTAGCAATTATAGTTCCAGGGG 58.399 40.000 0.00 0.00 0.00 4.79
2112 2165 1.632589 AGTTCCAGGGGTTGAAATGC 58.367 50.000 0.00 0.00 0.00 3.56
2132 2185 7.452880 AATGCTTTTCTTGTACTAGCAATGA 57.547 32.000 0.00 0.00 44.12 2.57
2155 2208 2.162681 CTTAGCTCCCTGGTTTGGTTG 58.837 52.381 0.00 0.00 0.00 3.77
2163 2216 2.230660 CCTGGTTTGGTTGGAAGACTC 58.769 52.381 0.00 0.00 0.00 3.36
2282 2351 6.591750 TGTTTCTGTTTTGGTGTTTCCTTA 57.408 33.333 0.00 0.00 37.07 2.69
2397 2467 7.898014 TCTTACTACTGGAAAGCATCTATCA 57.102 36.000 0.00 0.00 0.00 2.15
2401 2471 9.905713 TTACTACTGGAAAGCATCTATCAAAAT 57.094 29.630 0.00 0.00 0.00 1.82
2582 2702 3.064271 GGCATTTTTGTGCTGGCATATTG 59.936 43.478 0.00 0.00 44.45 1.90
2661 2785 2.095768 TGCGTTGCTATGTGCTTCTTTC 60.096 45.455 0.00 0.00 43.37 2.62
2698 2822 9.462606 AGCAATAACTTTGTTATTAAGTAGCCT 57.537 29.630 13.24 3.66 34.88 4.58
2760 2896 9.045223 GGCTACTGTTTTTCTTTTCATTGAATT 57.955 29.630 0.00 0.00 0.00 2.17
2803 2939 1.133356 AGGGAAAGAGCTGCAGGTTTT 60.133 47.619 21.18 18.02 0.00 2.43
2885 3021 1.948104 CGTTTGGTCTGGAACTGTGA 58.052 50.000 0.00 0.00 0.00 3.58
2975 3117 5.578157 AAAAGTACAGGCTTCCCTCTTTA 57.422 39.130 0.00 0.00 40.33 1.85
3014 4828 7.372634 CAAAGTTGCAATGATGATTCGATAC 57.627 36.000 0.59 0.00 0.00 2.24
3018 4832 7.412853 AGTTGCAATGATGATTCGATACTTTC 58.587 34.615 0.59 0.00 0.00 2.62
3050 4864 8.082242 GGTCAAGTTAAGCAATTCTTGTGTATT 58.918 33.333 10.02 0.00 38.53 1.89
3053 4867 9.341899 CAAGTTAAGCAATTCTTGTGTATTACC 57.658 33.333 0.00 0.00 36.25 2.85
3055 4869 9.953565 AGTTAAGCAATTCTTGTGTATTACCTA 57.046 29.630 0.00 0.00 36.25 3.08
3056 4870 9.983804 GTTAAGCAATTCTTGTGTATTACCTAC 57.016 33.333 0.00 0.00 36.25 3.18
3057 4871 6.903883 AGCAATTCTTGTGTATTACCTACG 57.096 37.500 0.00 0.00 32.61 3.51
3058 4872 6.403878 AGCAATTCTTGTGTATTACCTACGT 58.596 36.000 0.00 0.00 32.61 3.57
3059 4873 6.534079 AGCAATTCTTGTGTATTACCTACGTC 59.466 38.462 0.00 0.00 32.61 4.34
3061 4875 4.989279 TCTTGTGTATTACCTACGTCCC 57.011 45.455 0.00 0.00 32.61 4.46
3062 4876 4.343231 TCTTGTGTATTACCTACGTCCCA 58.657 43.478 0.00 0.00 32.61 4.37
3063 4877 4.771577 TCTTGTGTATTACCTACGTCCCAA 59.228 41.667 0.00 0.00 32.61 4.12
3064 4878 5.245751 TCTTGTGTATTACCTACGTCCCAAA 59.754 40.000 0.00 0.00 32.61 3.28
3066 4880 6.052405 TGTGTATTACCTACGTCCCAAAAT 57.948 37.500 0.00 0.00 32.61 1.82
3067 4881 6.474630 TGTGTATTACCTACGTCCCAAAATT 58.525 36.000 0.00 0.00 32.61 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.208293 GAAATGAGGCGGGTCTTCTCT 59.792 52.381 0.00 0.00 0.00 3.10
1 2 1.657822 GAAATGAGGCGGGTCTTCTC 58.342 55.000 0.00 0.00 0.00 2.87
2 3 0.253327 GGAAATGAGGCGGGTCTTCT 59.747 55.000 0.00 0.00 0.00 2.85
3 4 0.035439 TGGAAATGAGGCGGGTCTTC 60.035 55.000 0.00 0.00 0.00 2.87
4 5 0.625849 ATGGAAATGAGGCGGGTCTT 59.374 50.000 0.00 0.00 0.00 3.01
5 6 1.507140 TATGGAAATGAGGCGGGTCT 58.493 50.000 0.00 0.00 0.00 3.85
6 7 2.568623 ATATGGAAATGAGGCGGGTC 57.431 50.000 0.00 0.00 0.00 4.46
7 8 4.657814 ATAATATGGAAATGAGGCGGGT 57.342 40.909 0.00 0.00 0.00 5.28
8 9 5.009631 TCAATAATATGGAAATGAGGCGGG 58.990 41.667 0.00 0.00 0.00 6.13
9 10 6.207417 AGTTCAATAATATGGAAATGAGGCGG 59.793 38.462 0.00 0.00 0.00 6.13
10 11 7.206981 AGTTCAATAATATGGAAATGAGGCG 57.793 36.000 0.00 0.00 0.00 5.52
11 12 8.632679 TGAAGTTCAATAATATGGAAATGAGGC 58.367 33.333 2.20 0.00 0.00 4.70
14 15 9.970395 GCATGAAGTTCAATAATATGGAAATGA 57.030 29.630 10.14 0.00 0.00 2.57
15 16 9.199982 GGCATGAAGTTCAATAATATGGAAATG 57.800 33.333 10.14 0.00 0.00 2.32
16 17 9.151177 AGGCATGAAGTTCAATAATATGGAAAT 57.849 29.630 10.14 0.00 0.00 2.17
17 18 8.537728 AGGCATGAAGTTCAATAATATGGAAA 57.462 30.769 10.14 0.00 0.00 3.13
18 19 8.537728 AAGGCATGAAGTTCAATAATATGGAA 57.462 30.769 10.14 0.00 0.00 3.53
19 20 9.639563 TTAAGGCATGAAGTTCAATAATATGGA 57.360 29.630 10.14 0.00 0.00 3.41
24 25 9.822185 GGATTTTAAGGCATGAAGTTCAATAAT 57.178 29.630 10.14 0.00 0.00 1.28
25 26 8.257306 GGGATTTTAAGGCATGAAGTTCAATAA 58.743 33.333 10.14 2.63 0.00 1.40
26 27 7.147742 GGGGATTTTAAGGCATGAAGTTCAATA 60.148 37.037 10.14 0.00 0.00 1.90
27 28 6.352137 GGGGATTTTAAGGCATGAAGTTCAAT 60.352 38.462 10.14 0.00 0.00 2.57
28 29 5.046663 GGGGATTTTAAGGCATGAAGTTCAA 60.047 40.000 10.14 0.00 0.00 2.69
29 30 4.466015 GGGGATTTTAAGGCATGAAGTTCA 59.534 41.667 8.27 8.27 0.00 3.18
30 31 4.711846 AGGGGATTTTAAGGCATGAAGTTC 59.288 41.667 0.00 0.00 0.00 3.01
31 32 4.687976 AGGGGATTTTAAGGCATGAAGTT 58.312 39.130 0.00 0.00 0.00 2.66
32 33 4.281657 GAGGGGATTTTAAGGCATGAAGT 58.718 43.478 0.00 0.00 0.00 3.01
33 34 3.316308 CGAGGGGATTTTAAGGCATGAAG 59.684 47.826 0.00 0.00 0.00 3.02
34 35 3.053991 TCGAGGGGATTTTAAGGCATGAA 60.054 43.478 0.00 0.00 0.00 2.57
35 36 2.507886 TCGAGGGGATTTTAAGGCATGA 59.492 45.455 0.00 0.00 0.00 3.07
36 37 2.930950 TCGAGGGGATTTTAAGGCATG 58.069 47.619 0.00 0.00 0.00 4.06
37 38 3.662759 TTCGAGGGGATTTTAAGGCAT 57.337 42.857 0.00 0.00 0.00 4.40
38 39 3.287222 CATTCGAGGGGATTTTAAGGCA 58.713 45.455 0.00 0.00 0.00 4.75
39 40 2.623416 CCATTCGAGGGGATTTTAAGGC 59.377 50.000 0.00 0.00 0.00 4.35
40 41 4.164843 TCCATTCGAGGGGATTTTAAGG 57.835 45.455 3.23 0.00 0.00 2.69
41 42 5.376625 TCATCCATTCGAGGGGATTTTAAG 58.623 41.667 15.10 6.36 41.93 1.85
42 43 5.381184 TCATCCATTCGAGGGGATTTTAA 57.619 39.130 15.10 2.32 41.93 1.52
43 44 5.381184 TTCATCCATTCGAGGGGATTTTA 57.619 39.130 15.10 4.27 41.93 1.52
44 45 3.951563 TCATCCATTCGAGGGGATTTT 57.048 42.857 15.10 0.00 41.93 1.82
45 46 3.951563 TTCATCCATTCGAGGGGATTT 57.048 42.857 15.10 0.00 41.93 2.17
46 47 3.951563 TTTCATCCATTCGAGGGGATT 57.048 42.857 15.10 1.80 41.93 3.01
47 48 3.951563 TTTTCATCCATTCGAGGGGAT 57.048 42.857 12.68 12.68 44.65 3.85
48 49 3.730215 TTTTTCATCCATTCGAGGGGA 57.270 42.857 9.27 9.27 37.64 4.81
66 67 9.408648 AGGTCCGTGAATTATTCAATCTATTTT 57.591 29.630 9.39 0.00 42.15 1.82
67 68 8.980481 AGGTCCGTGAATTATTCAATCTATTT 57.020 30.769 9.39 0.00 42.15 1.40
68 69 8.980481 AAGGTCCGTGAATTATTCAATCTATT 57.020 30.769 9.39 0.00 42.15 1.73
69 70 8.432805 AGAAGGTCCGTGAATTATTCAATCTAT 58.567 33.333 9.39 0.00 42.15 1.98
70 71 7.792032 AGAAGGTCCGTGAATTATTCAATCTA 58.208 34.615 9.39 0.00 42.15 1.98
71 72 6.653989 AGAAGGTCCGTGAATTATTCAATCT 58.346 36.000 9.39 0.00 42.15 2.40
72 73 6.763610 AGAGAAGGTCCGTGAATTATTCAATC 59.236 38.462 9.39 0.00 42.15 2.67
73 74 6.540189 CAGAGAAGGTCCGTGAATTATTCAAT 59.460 38.462 9.39 0.00 42.15 2.57
74 75 5.874810 CAGAGAAGGTCCGTGAATTATTCAA 59.125 40.000 9.39 0.00 42.15 2.69
75 76 5.419542 CAGAGAAGGTCCGTGAATTATTCA 58.580 41.667 3.20 3.20 37.33 2.57
76 77 4.811557 CCAGAGAAGGTCCGTGAATTATTC 59.188 45.833 0.00 0.00 0.00 1.75
77 78 4.770795 CCAGAGAAGGTCCGTGAATTATT 58.229 43.478 0.00 0.00 0.00 1.40
78 79 3.432326 GCCAGAGAAGGTCCGTGAATTAT 60.432 47.826 0.00 0.00 0.00 1.28
79 80 2.093658 GCCAGAGAAGGTCCGTGAATTA 60.094 50.000 0.00 0.00 0.00 1.40
80 81 1.339151 GCCAGAGAAGGTCCGTGAATT 60.339 52.381 0.00 0.00 0.00 2.17
81 82 0.250513 GCCAGAGAAGGTCCGTGAAT 59.749 55.000 0.00 0.00 0.00 2.57
82 83 1.671742 GCCAGAGAAGGTCCGTGAA 59.328 57.895 0.00 0.00 0.00 3.18
83 84 2.636412 CGCCAGAGAAGGTCCGTGA 61.636 63.158 0.00 0.00 0.00 4.35
84 85 2.125912 CGCCAGAGAAGGTCCGTG 60.126 66.667 0.00 0.00 0.00 4.94
85 86 2.600769 ACGCCAGAGAAGGTCCGT 60.601 61.111 0.00 0.00 0.00 4.69
86 87 2.125912 CACGCCAGAGAAGGTCCG 60.126 66.667 0.00 0.00 0.00 4.79
87 88 2.435059 GCACGCCAGAGAAGGTCC 60.435 66.667 0.00 0.00 0.00 4.46
88 89 2.564553 ATCGCACGCCAGAGAAGGTC 62.565 60.000 0.00 0.00 0.00 3.85
89 90 2.650116 ATCGCACGCCAGAGAAGGT 61.650 57.895 0.00 0.00 0.00 3.50
90 91 2.169789 CATCGCACGCCAGAGAAGG 61.170 63.158 0.00 0.00 0.00 3.46
91 92 1.153765 TCATCGCACGCCAGAGAAG 60.154 57.895 0.00 0.00 0.00 2.85
92 93 1.446099 GTCATCGCACGCCAGAGAA 60.446 57.895 0.00 0.00 0.00 2.87
93 94 2.181777 GTCATCGCACGCCAGAGA 59.818 61.111 0.00 0.00 0.00 3.10
94 95 2.004808 TAGGTCATCGCACGCCAGAG 62.005 60.000 0.00 0.00 0.00 3.35
95 96 1.600511 TTAGGTCATCGCACGCCAGA 61.601 55.000 0.00 0.00 0.00 3.86
96 97 0.530650 ATTAGGTCATCGCACGCCAG 60.531 55.000 0.00 0.00 0.00 4.85
97 98 0.747852 TATTAGGTCATCGCACGCCA 59.252 50.000 0.00 0.00 0.00 5.69
98 99 1.860676 TTATTAGGTCATCGCACGCC 58.139 50.000 0.00 0.00 0.00 5.68
99 100 3.308866 AGTTTTATTAGGTCATCGCACGC 59.691 43.478 0.00 0.00 0.00 5.34
100 101 4.804139 AGAGTTTTATTAGGTCATCGCACG 59.196 41.667 0.00 0.00 0.00 5.34
101 102 6.663944 AAGAGTTTTATTAGGTCATCGCAC 57.336 37.500 0.00 0.00 0.00 5.34
102 103 8.780846 TTTAAGAGTTTTATTAGGTCATCGCA 57.219 30.769 0.00 0.00 0.00 5.10
103 104 9.865484 GATTTAAGAGTTTTATTAGGTCATCGC 57.135 33.333 0.00 0.00 0.00 4.58
109 110 9.379791 CGAGTGGATTTAAGAGTTTTATTAGGT 57.620 33.333 0.00 0.00 0.00 3.08
110 111 9.595823 TCGAGTGGATTTAAGAGTTTTATTAGG 57.404 33.333 0.00 0.00 0.00 2.69
113 114 9.667107 TGATCGAGTGGATTTAAGAGTTTTATT 57.333 29.630 0.00 0.00 34.82 1.40
114 115 9.667107 TTGATCGAGTGGATTTAAGAGTTTTAT 57.333 29.630 0.00 0.00 34.82 1.40
115 116 9.667107 ATTGATCGAGTGGATTTAAGAGTTTTA 57.333 29.630 0.00 0.00 34.82 1.52
116 117 7.979444 TTGATCGAGTGGATTTAAGAGTTTT 57.021 32.000 0.00 0.00 34.82 2.43
117 118 7.824289 TCATTGATCGAGTGGATTTAAGAGTTT 59.176 33.333 0.00 0.00 34.82 2.66
118 119 7.331026 TCATTGATCGAGTGGATTTAAGAGTT 58.669 34.615 0.00 0.00 34.82 3.01
119 120 6.878317 TCATTGATCGAGTGGATTTAAGAGT 58.122 36.000 0.00 0.00 34.82 3.24
120 121 7.776933 TTCATTGATCGAGTGGATTTAAGAG 57.223 36.000 0.00 0.00 34.82 2.85
121 122 7.986889 TCATTCATTGATCGAGTGGATTTAAGA 59.013 33.333 0.00 0.00 34.82 2.10
122 123 8.146479 TCATTCATTGATCGAGTGGATTTAAG 57.854 34.615 0.00 0.00 34.82 1.85
123 124 8.504812 TTCATTCATTGATCGAGTGGATTTAA 57.495 30.769 0.00 0.00 34.82 1.52
124 125 8.504812 TTTCATTCATTGATCGAGTGGATTTA 57.495 30.769 0.00 0.00 34.82 1.40
125 126 7.395190 TTTCATTCATTGATCGAGTGGATTT 57.605 32.000 0.00 0.00 34.82 2.17
126 127 7.395190 TTTTCATTCATTGATCGAGTGGATT 57.605 32.000 0.00 0.00 34.82 3.01
127 128 7.395190 TTTTTCATTCATTGATCGAGTGGAT 57.605 32.000 0.00 0.00 38.35 3.41
128 129 6.816134 TTTTTCATTCATTGATCGAGTGGA 57.184 33.333 0.00 0.00 33.34 4.02
149 150 7.968405 GTGTGAAGTAATCAATCCGCTATTTTT 59.032 33.333 0.00 0.00 40.50 1.94
150 151 7.472543 GTGTGAAGTAATCAATCCGCTATTTT 58.527 34.615 0.00 0.00 40.50 1.82
151 152 6.238103 CGTGTGAAGTAATCAATCCGCTATTT 60.238 38.462 0.00 0.00 40.50 1.40
152 153 5.234329 CGTGTGAAGTAATCAATCCGCTATT 59.766 40.000 0.00 0.00 40.50 1.73
153 154 4.745125 CGTGTGAAGTAATCAATCCGCTAT 59.255 41.667 0.00 0.00 40.50 2.97
154 155 4.109766 CGTGTGAAGTAATCAATCCGCTA 58.890 43.478 0.00 0.00 40.50 4.26
155 156 2.930040 CGTGTGAAGTAATCAATCCGCT 59.070 45.455 0.00 0.00 40.50 5.52
156 157 2.536928 GCGTGTGAAGTAATCAATCCGC 60.537 50.000 0.00 0.00 40.50 5.54
157 158 2.285026 CGCGTGTGAAGTAATCAATCCG 60.285 50.000 0.00 0.00 40.50 4.18
158 159 2.030457 CCGCGTGTGAAGTAATCAATCC 59.970 50.000 4.92 0.00 40.50 3.01
159 160 2.536928 GCCGCGTGTGAAGTAATCAATC 60.537 50.000 4.92 0.00 40.50 2.67
160 161 1.396996 GCCGCGTGTGAAGTAATCAAT 59.603 47.619 4.92 0.00 40.50 2.57
161 162 0.793861 GCCGCGTGTGAAGTAATCAA 59.206 50.000 4.92 0.00 40.50 2.57
162 163 1.348538 CGCCGCGTGTGAAGTAATCA 61.349 55.000 4.92 0.00 35.05 2.57
163 164 1.074319 TCGCCGCGTGTGAAGTAATC 61.074 55.000 13.39 0.00 0.00 1.75
164 165 0.668096 TTCGCCGCGTGTGAAGTAAT 60.668 50.000 13.39 0.00 38.52 1.89
165 166 0.875040 TTTCGCCGCGTGTGAAGTAA 60.875 50.000 13.39 6.65 43.90 2.24
166 167 1.300003 TTTCGCCGCGTGTGAAGTA 60.300 52.632 13.39 7.20 43.90 2.24
167 168 2.586635 TTTCGCCGCGTGTGAAGT 60.587 55.556 13.39 0.00 43.90 3.01
168 169 2.127758 GTTTCGCCGCGTGTGAAG 60.128 61.111 13.39 0.00 43.90 3.02
169 170 3.641986 GGTTTCGCCGCGTGTGAA 61.642 61.111 13.39 16.21 41.59 3.18
172 173 3.592856 TATGGGTTTCGCCGCGTGT 62.593 57.895 13.39 0.00 38.44 4.49
173 174 2.392181 TTATGGGTTTCGCCGCGTG 61.392 57.895 13.39 0.00 38.44 5.34
174 175 2.047083 TTATGGGTTTCGCCGCGT 60.047 55.556 13.39 0.00 38.44 6.01
175 176 2.401990 GTTATGGGTTTCGCCGCG 59.598 61.111 6.39 6.39 38.44 6.46
176 177 1.587933 TTGGTTATGGGTTTCGCCGC 61.588 55.000 0.00 0.00 38.44 6.53
177 178 0.882474 TTTGGTTATGGGTTTCGCCG 59.118 50.000 0.00 0.00 38.44 6.46
178 179 3.258228 CATTTTGGTTATGGGTTTCGCC 58.742 45.455 0.00 0.00 0.00 5.54
179 180 3.920446 ACATTTTGGTTATGGGTTTCGC 58.080 40.909 0.00 0.00 0.00 4.70
180 181 4.926832 GGAACATTTTGGTTATGGGTTTCG 59.073 41.667 0.00 0.00 0.00 3.46
181 182 6.109156 AGGAACATTTTGGTTATGGGTTTC 57.891 37.500 0.00 0.00 0.00 2.78
182 183 6.328934 AGAAGGAACATTTTGGTTATGGGTTT 59.671 34.615 0.00 0.00 0.00 3.27
183 184 5.843969 AGAAGGAACATTTTGGTTATGGGTT 59.156 36.000 0.00 0.00 0.00 4.11
184 185 5.402630 AGAAGGAACATTTTGGTTATGGGT 58.597 37.500 0.00 0.00 0.00 4.51
185 186 6.165577 CAAGAAGGAACATTTTGGTTATGGG 58.834 40.000 0.00 0.00 0.00 4.00
186 187 5.639082 GCAAGAAGGAACATTTTGGTTATGG 59.361 40.000 0.00 0.00 0.00 2.74
187 188 6.146021 GTGCAAGAAGGAACATTTTGGTTATG 59.854 38.462 0.00 0.00 0.00 1.90
188 189 6.183360 TGTGCAAGAAGGAACATTTTGGTTAT 60.183 34.615 0.00 0.00 0.00 1.89
189 190 5.127845 TGTGCAAGAAGGAACATTTTGGTTA 59.872 36.000 0.00 0.00 0.00 2.85
190 191 4.081198 TGTGCAAGAAGGAACATTTTGGTT 60.081 37.500 0.00 0.00 0.00 3.67
191 192 3.450457 TGTGCAAGAAGGAACATTTTGGT 59.550 39.130 0.00 0.00 0.00 3.67
192 193 3.803778 GTGTGCAAGAAGGAACATTTTGG 59.196 43.478 0.00 0.00 0.00 3.28
193 194 4.431809 TGTGTGCAAGAAGGAACATTTTG 58.568 39.130 0.00 0.00 0.00 2.44
194 195 4.441913 CCTGTGTGCAAGAAGGAACATTTT 60.442 41.667 4.18 0.00 30.92 1.82
195 196 3.068590 CCTGTGTGCAAGAAGGAACATTT 59.931 43.478 4.18 0.00 30.92 2.32
196 197 2.624838 CCTGTGTGCAAGAAGGAACATT 59.375 45.455 4.18 0.00 30.92 2.71
197 198 2.233271 CCTGTGTGCAAGAAGGAACAT 58.767 47.619 4.18 0.00 30.92 2.71
198 199 1.679139 CCTGTGTGCAAGAAGGAACA 58.321 50.000 4.18 0.00 30.92 3.18
199 200 0.954452 CCCTGTGTGCAAGAAGGAAC 59.046 55.000 10.62 0.00 30.92 3.62
200 201 0.550914 ACCCTGTGTGCAAGAAGGAA 59.449 50.000 10.62 0.00 30.92 3.36
201 202 0.550914 AACCCTGTGTGCAAGAAGGA 59.449 50.000 10.62 0.00 30.92 3.36
202 203 1.402787 AAACCCTGTGTGCAAGAAGG 58.597 50.000 0.00 0.00 0.00 3.46
203 204 3.131046 AGAAAAACCCTGTGTGCAAGAAG 59.869 43.478 0.00 0.00 0.00 2.85
204 205 3.096092 AGAAAAACCCTGTGTGCAAGAA 58.904 40.909 0.00 0.00 0.00 2.52
205 206 2.733956 AGAAAAACCCTGTGTGCAAGA 58.266 42.857 0.00 0.00 0.00 3.02
206 207 3.189285 CAAGAAAAACCCTGTGTGCAAG 58.811 45.455 0.00 0.00 0.00 4.01
207 208 2.676463 GCAAGAAAAACCCTGTGTGCAA 60.676 45.455 0.00 0.00 0.00 4.08
208 209 1.134848 GCAAGAAAAACCCTGTGTGCA 60.135 47.619 0.00 0.00 0.00 4.57
209 210 1.134848 TGCAAGAAAAACCCTGTGTGC 60.135 47.619 0.00 0.00 0.00 4.57
210 211 2.539476 GTGCAAGAAAAACCCTGTGTG 58.461 47.619 0.00 0.00 0.00 3.82
211 212 1.134175 CGTGCAAGAAAAACCCTGTGT 59.866 47.619 0.00 0.00 0.00 3.72
212 213 1.134175 ACGTGCAAGAAAAACCCTGTG 59.866 47.619 6.65 0.00 0.00 3.66
213 214 1.470051 ACGTGCAAGAAAAACCCTGT 58.530 45.000 6.65 0.00 0.00 4.00
214 215 3.915437 ATACGTGCAAGAAAAACCCTG 57.085 42.857 6.65 0.00 0.00 4.45
215 216 6.433093 AGAATTATACGTGCAAGAAAAACCCT 59.567 34.615 6.65 0.00 0.00 4.34
216 217 6.617879 AGAATTATACGTGCAAGAAAAACCC 58.382 36.000 6.65 0.00 0.00 4.11
217 218 7.270579 GTGAGAATTATACGTGCAAGAAAAACC 59.729 37.037 6.65 0.00 0.00 3.27
218 219 8.015658 AGTGAGAATTATACGTGCAAGAAAAAC 58.984 33.333 6.65 0.00 0.00 2.43
219 220 8.015087 CAGTGAGAATTATACGTGCAAGAAAAA 58.985 33.333 6.65 0.00 0.00 1.94
220 221 7.518161 CAGTGAGAATTATACGTGCAAGAAAA 58.482 34.615 6.65 0.00 0.00 2.29
221 222 6.402118 GCAGTGAGAATTATACGTGCAAGAAA 60.402 38.462 6.65 0.00 0.00 2.52
222 223 5.063438 GCAGTGAGAATTATACGTGCAAGAA 59.937 40.000 6.65 0.00 0.00 2.52
223 224 4.566759 GCAGTGAGAATTATACGTGCAAGA 59.433 41.667 6.65 0.00 0.00 3.02
224 225 4.329801 TGCAGTGAGAATTATACGTGCAAG 59.670 41.667 0.00 0.00 36.77 4.01
225 226 4.092821 GTGCAGTGAGAATTATACGTGCAA 59.907 41.667 0.00 0.00 41.07 4.08
226 227 3.616821 GTGCAGTGAGAATTATACGTGCA 59.383 43.478 0.00 0.00 37.34 4.57
227 228 3.865745 AGTGCAGTGAGAATTATACGTGC 59.134 43.478 0.00 0.00 0.00 5.34
228 229 6.752351 ACTTAGTGCAGTGAGAATTATACGTG 59.248 38.462 19.38 0.00 0.00 4.49
229 230 6.752351 CACTTAGTGCAGTGAGAATTATACGT 59.248 38.462 19.38 0.00 46.29 3.57
230 231 7.154668 CACTTAGTGCAGTGAGAATTATACG 57.845 40.000 19.38 0.00 46.29 3.06
246 247 5.748630 TGAGAATTATAGTGCGCACTTAGTG 59.251 40.000 44.31 8.18 42.54 2.74
247 248 5.749109 GTGAGAATTATAGTGCGCACTTAGT 59.251 40.000 44.31 31.10 42.54 2.24
248 249 5.980116 AGTGAGAATTATAGTGCGCACTTAG 59.020 40.000 44.31 0.00 42.54 2.18
249 250 5.748630 CAGTGAGAATTATAGTGCGCACTTA 59.251 40.000 44.31 30.82 38.93 2.24
250 251 4.568359 CAGTGAGAATTATAGTGCGCACTT 59.432 41.667 44.31 31.78 38.93 3.16
251 252 4.115516 CAGTGAGAATTATAGTGCGCACT 58.884 43.478 41.46 41.46 41.05 4.40
252 253 3.302740 GCAGTGAGAATTATAGTGCGCAC 60.303 47.826 32.79 32.79 31.91 5.34
253 254 2.866156 GCAGTGAGAATTATAGTGCGCA 59.134 45.455 5.66 5.66 31.91 6.09
254 255 2.866156 TGCAGTGAGAATTATAGTGCGC 59.134 45.455 0.00 0.00 42.24 6.09
255 256 4.115516 AGTGCAGTGAGAATTATAGTGCG 58.884 43.478 0.00 0.00 42.24 5.34
256 257 6.758886 ACTTAGTGCAGTGAGAATTATAGTGC 59.241 38.462 19.38 8.26 40.32 4.40
257 258 8.709386 AACTTAGTGCAGTGAGAATTATAGTG 57.291 34.615 19.38 0.00 0.00 2.74
258 259 9.155975 CAAACTTAGTGCAGTGAGAATTATAGT 57.844 33.333 19.38 0.00 0.00 2.12
259 260 9.371136 TCAAACTTAGTGCAGTGAGAATTATAG 57.629 33.333 19.38 4.04 0.00 1.31
260 261 9.151471 GTCAAACTTAGTGCAGTGAGAATTATA 57.849 33.333 19.38 4.31 0.00 0.98
261 262 7.119846 GGTCAAACTTAGTGCAGTGAGAATTAT 59.880 37.037 19.38 0.00 0.00 1.28
262 263 6.426937 GGTCAAACTTAGTGCAGTGAGAATTA 59.573 38.462 19.38 0.60 0.00 1.40
263 264 5.239525 GGTCAAACTTAGTGCAGTGAGAATT 59.760 40.000 19.38 10.83 0.00 2.17
264 265 4.757149 GGTCAAACTTAGTGCAGTGAGAAT 59.243 41.667 19.38 5.59 0.00 2.40
265 266 4.127171 GGTCAAACTTAGTGCAGTGAGAA 58.873 43.478 19.38 0.00 0.00 2.87
266 267 3.133901 TGGTCAAACTTAGTGCAGTGAGA 59.866 43.478 19.38 0.00 0.00 3.27
267 268 3.466836 TGGTCAAACTTAGTGCAGTGAG 58.533 45.455 11.57 11.57 0.00 3.51
268 269 3.552132 TGGTCAAACTTAGTGCAGTGA 57.448 42.857 3.69 0.00 0.00 3.41
269 270 3.814842 TCATGGTCAAACTTAGTGCAGTG 59.185 43.478 3.69 0.00 0.00 3.66
270 271 4.085357 TCATGGTCAAACTTAGTGCAGT 57.915 40.909 0.00 0.00 0.00 4.40
271 272 5.633830 ATTCATGGTCAAACTTAGTGCAG 57.366 39.130 0.00 0.00 0.00 4.41
272 273 6.403866 AAATTCATGGTCAAACTTAGTGCA 57.596 33.333 0.00 0.00 0.00 4.57
273 274 8.986477 ATTAAATTCATGGTCAAACTTAGTGC 57.014 30.769 0.00 0.00 0.00 4.40
353 354 9.469807 TTCGTATTTTGTGCAAAATTTGACTAT 57.530 25.926 22.65 5.10 43.38 2.12
354 355 8.858003 TTCGTATTTTGTGCAAAATTTGACTA 57.142 26.923 22.65 9.04 43.38 2.59
355 356 7.704472 TCTTCGTATTTTGTGCAAAATTTGACT 59.296 29.630 22.65 6.28 43.38 3.41
356 357 7.836512 TCTTCGTATTTTGTGCAAAATTTGAC 58.163 30.769 22.65 15.69 43.38 3.18
357 358 7.993821 TCTTCGTATTTTGTGCAAAATTTGA 57.006 28.000 22.65 18.09 43.38 2.69
358 359 8.486383 TCATCTTCGTATTTTGTGCAAAATTTG 58.514 29.630 22.65 16.62 43.38 2.32
359 360 8.487176 GTCATCTTCGTATTTTGTGCAAAATTT 58.513 29.630 22.65 8.06 43.38 1.82
360 361 7.116233 GGTCATCTTCGTATTTTGTGCAAAATT 59.884 33.333 22.65 10.95 43.38 1.82
361 362 6.586082 GGTCATCTTCGTATTTTGTGCAAAAT 59.414 34.615 21.61 21.61 43.38 1.82
362 363 5.918011 GGTCATCTTCGTATTTTGTGCAAAA 59.082 36.000 11.77 11.77 43.48 2.44
363 364 5.009110 TGGTCATCTTCGTATTTTGTGCAAA 59.991 36.000 0.00 0.00 0.00 3.68
364 365 4.517075 TGGTCATCTTCGTATTTTGTGCAA 59.483 37.500 0.00 0.00 0.00 4.08
365 366 4.068599 TGGTCATCTTCGTATTTTGTGCA 58.931 39.130 0.00 0.00 0.00 4.57
366 367 4.678509 TGGTCATCTTCGTATTTTGTGC 57.321 40.909 0.00 0.00 0.00 4.57
367 368 9.061610 GTTTATTGGTCATCTTCGTATTTTGTG 57.938 33.333 0.00 0.00 0.00 3.33
368 369 9.010029 AGTTTATTGGTCATCTTCGTATTTTGT 57.990 29.630 0.00 0.00 0.00 2.83
371 372 9.326413 CCTAGTTTATTGGTCATCTTCGTATTT 57.674 33.333 0.00 0.00 0.00 1.40
372 373 8.701895 TCCTAGTTTATTGGTCATCTTCGTATT 58.298 33.333 0.00 0.00 0.00 1.89
373 374 8.142551 GTCCTAGTTTATTGGTCATCTTCGTAT 58.857 37.037 0.00 0.00 0.00 3.06
374 375 7.123098 TGTCCTAGTTTATTGGTCATCTTCGTA 59.877 37.037 0.00 0.00 0.00 3.43
375 376 6.070995 TGTCCTAGTTTATTGGTCATCTTCGT 60.071 38.462 0.00 0.00 0.00 3.85
376 377 6.338146 TGTCCTAGTTTATTGGTCATCTTCG 58.662 40.000 0.00 0.00 0.00 3.79
377 378 7.556844 TCTGTCCTAGTTTATTGGTCATCTTC 58.443 38.462 0.00 0.00 0.00 2.87
378 379 7.365117 CCTCTGTCCTAGTTTATTGGTCATCTT 60.365 40.741 0.00 0.00 0.00 2.40
379 380 6.098982 CCTCTGTCCTAGTTTATTGGTCATCT 59.901 42.308 0.00 0.00 0.00 2.90
380 381 6.127026 ACCTCTGTCCTAGTTTATTGGTCATC 60.127 42.308 0.00 0.00 0.00 2.92
381 382 5.726793 ACCTCTGTCCTAGTTTATTGGTCAT 59.273 40.000 0.00 0.00 0.00 3.06
382 383 5.091552 ACCTCTGTCCTAGTTTATTGGTCA 58.908 41.667 0.00 0.00 0.00 4.02
383 384 5.678955 ACCTCTGTCCTAGTTTATTGGTC 57.321 43.478 0.00 0.00 0.00 4.02
384 385 6.262207 ACTACCTCTGTCCTAGTTTATTGGT 58.738 40.000 0.00 0.00 0.00 3.67
385 386 6.793505 ACTACCTCTGTCCTAGTTTATTGG 57.206 41.667 0.00 0.00 0.00 3.16
386 387 9.186837 TCTTACTACCTCTGTCCTAGTTTATTG 57.813 37.037 0.00 0.00 0.00 1.90
387 388 9.939424 ATCTTACTACCTCTGTCCTAGTTTATT 57.061 33.333 0.00 0.00 0.00 1.40
388 389 9.357161 CATCTTACTACCTCTGTCCTAGTTTAT 57.643 37.037 0.00 0.00 0.00 1.40
389 390 7.284944 GCATCTTACTACCTCTGTCCTAGTTTA 59.715 40.741 0.00 0.00 0.00 2.01
390 391 6.097129 GCATCTTACTACCTCTGTCCTAGTTT 59.903 42.308 0.00 0.00 0.00 2.66
391 392 5.595133 GCATCTTACTACCTCTGTCCTAGTT 59.405 44.000 0.00 0.00 0.00 2.24
392 393 5.134661 GCATCTTACTACCTCTGTCCTAGT 58.865 45.833 0.00 0.00 0.00 2.57
393 394 5.133941 TGCATCTTACTACCTCTGTCCTAG 58.866 45.833 0.00 0.00 0.00 3.02
394 395 5.125367 TGCATCTTACTACCTCTGTCCTA 57.875 43.478 0.00 0.00 0.00 2.94
395 396 3.982516 TGCATCTTACTACCTCTGTCCT 58.017 45.455 0.00 0.00 0.00 3.85
396 397 4.737855 TTGCATCTTACTACCTCTGTCC 57.262 45.455 0.00 0.00 0.00 4.02
397 398 5.665459 ACATTGCATCTTACTACCTCTGTC 58.335 41.667 0.00 0.00 0.00 3.51
398 399 5.683876 ACATTGCATCTTACTACCTCTGT 57.316 39.130 0.00 0.00 0.00 3.41
399 400 6.344500 AGAACATTGCATCTTACTACCTCTG 58.656 40.000 0.00 0.00 0.00 3.35
400 401 6.552445 AGAACATTGCATCTTACTACCTCT 57.448 37.500 0.00 0.00 0.00 3.69
401 402 5.460419 CGAGAACATTGCATCTTACTACCTC 59.540 44.000 0.00 0.00 0.00 3.85
402 403 5.352284 CGAGAACATTGCATCTTACTACCT 58.648 41.667 0.00 0.00 0.00 3.08
403 404 4.025647 GCGAGAACATTGCATCTTACTACC 60.026 45.833 0.00 0.00 38.31 3.18
404 405 4.025647 GGCGAGAACATTGCATCTTACTAC 60.026 45.833 0.00 0.00 40.48 2.73
405 406 4.119862 GGCGAGAACATTGCATCTTACTA 58.880 43.478 0.00 0.00 40.48 1.82
406 407 2.939103 GGCGAGAACATTGCATCTTACT 59.061 45.455 0.00 0.00 40.48 2.24
407 408 2.285834 CGGCGAGAACATTGCATCTTAC 60.286 50.000 0.00 0.00 40.48 2.34
408 409 1.933181 CGGCGAGAACATTGCATCTTA 59.067 47.619 0.00 0.00 40.48 2.10
409 410 0.729116 CGGCGAGAACATTGCATCTT 59.271 50.000 0.00 0.00 40.48 2.40
410 411 1.709147 GCGGCGAGAACATTGCATCT 61.709 55.000 12.98 0.00 40.48 2.90
411 412 1.297893 GCGGCGAGAACATTGCATC 60.298 57.895 12.98 0.00 40.48 3.91
412 413 1.709147 GAGCGGCGAGAACATTGCAT 61.709 55.000 12.98 0.00 40.48 3.96
413 414 2.358615 AGCGGCGAGAACATTGCA 60.359 55.556 12.98 0.00 40.48 4.08
414 415 2.401195 GAGCGGCGAGAACATTGC 59.599 61.111 12.98 0.00 37.62 3.56
415 416 1.805539 TCGAGCGGCGAGAACATTG 60.806 57.895 12.98 0.00 45.59 2.82
416 417 2.571757 TCGAGCGGCGAGAACATT 59.428 55.556 12.98 0.00 45.59 2.71
424 425 1.225376 ATACTCTCTCTCGAGCGGCG 61.225 60.000 7.81 0.51 42.69 6.46
425 426 1.461897 GTATACTCTCTCTCGAGCGGC 59.538 57.143 7.81 0.00 37.19 6.53
426 427 2.734606 CAGTATACTCTCTCTCGAGCGG 59.265 54.545 7.81 3.10 37.19 5.52
427 428 3.427528 GTCAGTATACTCTCTCTCGAGCG 59.572 52.174 7.81 0.48 37.19 5.03
428 429 4.373527 TGTCAGTATACTCTCTCTCGAGC 58.626 47.826 7.81 0.00 37.19 5.03
429 430 6.018262 CCTTTGTCAGTATACTCTCTCTCGAG 60.018 46.154 5.93 5.93 38.67 4.04
430 431 5.818336 CCTTTGTCAGTATACTCTCTCTCGA 59.182 44.000 1.26 0.00 0.00 4.04
431 432 5.504994 GCCTTTGTCAGTATACTCTCTCTCG 60.505 48.000 1.26 0.00 0.00 4.04
432 433 5.358442 TGCCTTTGTCAGTATACTCTCTCTC 59.642 44.000 1.26 0.00 0.00 3.20
433 434 5.265191 TGCCTTTGTCAGTATACTCTCTCT 58.735 41.667 1.26 0.00 0.00 3.10
434 435 5.584253 TGCCTTTGTCAGTATACTCTCTC 57.416 43.478 1.26 0.00 0.00 3.20
435 436 7.661536 TTATGCCTTTGTCAGTATACTCTCT 57.338 36.000 1.26 0.00 0.00 3.10
436 437 8.718102 TTTTATGCCTTTGTCAGTATACTCTC 57.282 34.615 1.26 0.00 0.00 3.20
437 438 8.947115 GTTTTTATGCCTTTGTCAGTATACTCT 58.053 33.333 1.26 0.00 0.00 3.24
438 439 8.182227 GGTTTTTATGCCTTTGTCAGTATACTC 58.818 37.037 1.26 0.00 0.00 2.59
439 440 7.668052 TGGTTTTTATGCCTTTGTCAGTATACT 59.332 33.333 0.00 0.00 0.00 2.12
440 441 7.822658 TGGTTTTTATGCCTTTGTCAGTATAC 58.177 34.615 0.00 0.00 0.00 1.47
441 442 8.410673 TTGGTTTTTATGCCTTTGTCAGTATA 57.589 30.769 0.00 0.00 0.00 1.47
442 443 6.909550 TGGTTTTTATGCCTTTGTCAGTAT 57.090 33.333 0.00 0.00 0.00 2.12
443 444 6.547880 TCTTGGTTTTTATGCCTTTGTCAGTA 59.452 34.615 0.00 0.00 0.00 2.74
444 445 5.362430 TCTTGGTTTTTATGCCTTTGTCAGT 59.638 36.000 0.00 0.00 0.00 3.41
445 446 5.841810 TCTTGGTTTTTATGCCTTTGTCAG 58.158 37.500 0.00 0.00 0.00 3.51
446 447 5.860941 TCTTGGTTTTTATGCCTTTGTCA 57.139 34.783 0.00 0.00 0.00 3.58
447 448 5.465390 GGTTCTTGGTTTTTATGCCTTTGTC 59.535 40.000 0.00 0.00 0.00 3.18
448 449 5.104735 TGGTTCTTGGTTTTTATGCCTTTGT 60.105 36.000 0.00 0.00 0.00 2.83
449 450 5.363939 TGGTTCTTGGTTTTTATGCCTTTG 58.636 37.500 0.00 0.00 0.00 2.77
450 451 5.622346 TGGTTCTTGGTTTTTATGCCTTT 57.378 34.783 0.00 0.00 0.00 3.11
451 452 5.622346 TTGGTTCTTGGTTTTTATGCCTT 57.378 34.783 0.00 0.00 0.00 4.35
452 453 5.622346 TTTGGTTCTTGGTTTTTATGCCT 57.378 34.783 0.00 0.00 0.00 4.75
453 454 6.875948 AATTTGGTTCTTGGTTTTTATGCC 57.124 33.333 0.00 0.00 0.00 4.40
459 460 9.508642 TCTTGTTTTAATTTGGTTCTTGGTTTT 57.491 25.926 0.00 0.00 0.00 2.43
460 461 9.508642 TTCTTGTTTTAATTTGGTTCTTGGTTT 57.491 25.926 0.00 0.00 0.00 3.27
461 462 9.508642 TTTCTTGTTTTAATTTGGTTCTTGGTT 57.491 25.926 0.00 0.00 0.00 3.67
462 463 9.508642 TTTTCTTGTTTTAATTTGGTTCTTGGT 57.491 25.926 0.00 0.00 0.00 3.67
508 509 8.908903 GGGGGTTTCAAAATTCTATTTTGTTTT 58.091 29.630 18.91 0.00 39.62 2.43
509 510 8.458573 GGGGGTTTCAAAATTCTATTTTGTTT 57.541 30.769 18.91 0.00 39.62 2.83
531 532 8.349245 GTTTTCATAGTTTTTCATTTTTGGGGG 58.651 33.333 0.00 0.00 0.00 5.40
532 533 9.119418 AGTTTTCATAGTTTTTCATTTTTGGGG 57.881 29.630 0.00 0.00 0.00 4.96
550 551 8.082242 CCACTTTTCCTTTCGATTAGTTTTCAT 58.918 33.333 0.00 0.00 0.00 2.57
551 552 7.283580 TCCACTTTTCCTTTCGATTAGTTTTCA 59.716 33.333 0.00 0.00 0.00 2.69
552 553 7.590322 GTCCACTTTTCCTTTCGATTAGTTTTC 59.410 37.037 0.00 0.00 0.00 2.29
553 554 7.067737 TGTCCACTTTTCCTTTCGATTAGTTTT 59.932 33.333 0.00 0.00 0.00 2.43
554 555 6.544564 TGTCCACTTTTCCTTTCGATTAGTTT 59.455 34.615 0.00 0.00 0.00 2.66
555 556 6.059484 TGTCCACTTTTCCTTTCGATTAGTT 58.941 36.000 0.00 0.00 0.00 2.24
556 557 5.617252 TGTCCACTTTTCCTTTCGATTAGT 58.383 37.500 0.00 0.00 0.00 2.24
557 558 6.554334 TTGTCCACTTTTCCTTTCGATTAG 57.446 37.500 0.00 0.00 0.00 1.73
558 559 6.945938 TTTGTCCACTTTTCCTTTCGATTA 57.054 33.333 0.00 0.00 0.00 1.75
559 560 5.845391 TTTGTCCACTTTTCCTTTCGATT 57.155 34.783 0.00 0.00 0.00 3.34
560 561 5.845391 TTTTGTCCACTTTTCCTTTCGAT 57.155 34.783 0.00 0.00 0.00 3.59
561 562 5.358442 TCATTTTGTCCACTTTTCCTTTCGA 59.642 36.000 0.00 0.00 0.00 3.71
562 563 5.587289 TCATTTTGTCCACTTTTCCTTTCG 58.413 37.500 0.00 0.00 0.00 3.46
563 564 8.437360 AATTCATTTTGTCCACTTTTCCTTTC 57.563 30.769 0.00 0.00 0.00 2.62
564 565 8.806429 AAATTCATTTTGTCCACTTTTCCTTT 57.194 26.923 0.00 0.00 0.00 3.11
565 566 8.806429 AAAATTCATTTTGTCCACTTTTCCTT 57.194 26.923 0.00 0.00 38.46 3.36
566 567 9.898152 TTAAAATTCATTTTGTCCACTTTTCCT 57.102 25.926 7.63 0.00 40.00 3.36
684 689 7.373493 ACAAAAGCTGGAACTTATCTGATTTG 58.627 34.615 0.00 0.00 0.00 2.32
685 690 7.530426 ACAAAAGCTGGAACTTATCTGATTT 57.470 32.000 0.00 0.00 0.00 2.17
686 691 7.449704 AGAACAAAAGCTGGAACTTATCTGATT 59.550 33.333 0.00 0.00 0.00 2.57
722 727 1.133915 CCACCAAACCCACAGTGTACT 60.134 52.381 0.00 0.00 0.00 2.73
752 765 2.103143 CAGAGTACCAGCGGCTCG 59.897 66.667 0.00 0.00 34.69 5.03
753 766 2.496817 CCAGAGTACCAGCGGCTC 59.503 66.667 0.00 0.00 0.00 4.70
754 767 3.077556 CCCAGAGTACCAGCGGCT 61.078 66.667 0.00 0.00 0.00 5.52
755 768 4.840005 GCCCAGAGTACCAGCGGC 62.840 72.222 0.00 0.00 0.00 6.53
756 769 3.077556 AGCCCAGAGTACCAGCGG 61.078 66.667 0.00 0.00 0.00 5.52
757 770 1.320344 TACAGCCCAGAGTACCAGCG 61.320 60.000 0.00 0.00 0.00 5.18
758 771 0.461961 CTACAGCCCAGAGTACCAGC 59.538 60.000 0.00 0.00 0.00 4.85
759 772 0.461961 GCTACAGCCCAGAGTACCAG 59.538 60.000 0.00 0.00 34.31 4.00
760 773 0.041238 AGCTACAGCCCAGAGTACCA 59.959 55.000 0.00 0.00 43.38 3.25
761 774 0.747852 GAGCTACAGCCCAGAGTACC 59.252 60.000 0.00 0.00 43.38 3.34
762 775 1.770294 AGAGCTACAGCCCAGAGTAC 58.230 55.000 0.00 0.00 43.38 2.73
767 780 3.006247 GAGAAAAAGAGCTACAGCCCAG 58.994 50.000 0.00 0.00 43.38 4.45
790 803 4.039245 ACAGTGGTGATTTTTCGAGAGAGA 59.961 41.667 0.00 0.00 43.69 3.10
814 827 3.643792 AGGGGAACGAATAAGGAGATGAG 59.356 47.826 0.00 0.00 0.00 2.90
828 841 0.537653 GAGGAGGAAGAAGGGGAACG 59.462 60.000 0.00 0.00 0.00 3.95
829 842 0.913205 GGAGGAGGAAGAAGGGGAAC 59.087 60.000 0.00 0.00 0.00 3.62
830 843 0.800239 AGGAGGAGGAAGAAGGGGAA 59.200 55.000 0.00 0.00 0.00 3.97
841 856 4.825679 GGGTGGGGGAGGAGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
852 870 1.211567 TAGGGGACAATGTGGGTGGG 61.212 60.000 0.00 0.00 0.00 4.61
855 874 1.076513 GGTTTAGGGGACAATGTGGGT 59.923 52.381 0.00 0.00 0.00 4.51
859 878 2.241430 GCTAGGGTTTAGGGGACAATGT 59.759 50.000 0.00 0.00 0.00 2.71
866 885 2.370189 CTGATCTGCTAGGGTTTAGGGG 59.630 54.545 0.00 0.00 0.00 4.79
893 912 0.611618 ATGGGTGATTGCTGCGGAAA 60.612 50.000 0.00 0.00 0.00 3.13
926 945 2.125106 AAACTCTCATCCGCCGCC 60.125 61.111 0.00 0.00 0.00 6.13
928 947 1.002366 CAAGAAACTCTCATCCGCCG 58.998 55.000 0.00 0.00 0.00 6.46
935 955 2.880890 GCCTTGCTTCAAGAAACTCTCA 59.119 45.455 8.04 0.00 43.42 3.27
1022 1042 3.147595 CGGAGGCAGATCGGGACA 61.148 66.667 0.00 0.00 0.00 4.02
1110 1130 5.104318 GGACTTTATCTTCTCTCCATTGGGT 60.104 44.000 2.09 0.00 34.93 4.51
1115 1135 3.070302 GCGGGACTTTATCTTCTCTCCAT 59.930 47.826 0.00 0.00 0.00 3.41
1116 1136 2.431057 GCGGGACTTTATCTTCTCTCCA 59.569 50.000 0.00 0.00 0.00 3.86
1268 1288 2.162208 TCATCCGCAAAACTGAATCTGC 59.838 45.455 0.00 0.00 0.00 4.26
1271 1291 2.749621 ACCTCATCCGCAAAACTGAATC 59.250 45.455 0.00 0.00 0.00 2.52
1326 1349 3.839293 CTGAGAACTGTAGCTGTGTACC 58.161 50.000 0.00 0.00 0.00 3.34
1351 1374 2.846206 TGAATGTCTTGTATCCCCAGCT 59.154 45.455 0.00 0.00 0.00 4.24
1360 1383 4.019411 TGCCCTCTTGATGAATGTCTTGTA 60.019 41.667 0.00 0.00 0.00 2.41
1364 1387 2.842496 TCTGCCCTCTTGATGAATGTCT 59.158 45.455 0.00 0.00 0.00 3.41
1617 1651 1.303561 GACTGGTGATTGGGCAGCA 60.304 57.895 0.00 0.00 43.27 4.41
1625 1670 1.609061 CCGCACTGAAGACTGGTGATT 60.609 52.381 7.41 0.00 33.32 2.57
1969 2020 2.237143 TGTCCAACAGAGCCCTAAGATG 59.763 50.000 0.00 0.00 0.00 2.90
1998 2049 2.288948 GCTCCTGCTGAGATGATCGAAT 60.289 50.000 7.85 0.00 44.42 3.34
2103 2156 7.138736 TGCTAGTACAAGAAAAGCATTTCAAC 58.861 34.615 16.09 8.59 46.03 3.18
2132 2185 1.341383 CCAAACCAGGGAGCTAAGCAT 60.341 52.381 0.00 0.00 0.00 3.79
2155 2208 3.460857 ACTGCGGATAATGAGTCTTCC 57.539 47.619 0.00 0.00 0.00 3.46
2163 2216 8.763049 TGAATCTAAGATAACTGCGGATAATG 57.237 34.615 0.00 0.00 0.00 1.90
2235 2296 7.487189 ACAAAGTGACAGTGCTATAATACGTAC 59.513 37.037 0.00 0.00 0.00 3.67
2236 2297 7.541162 ACAAAGTGACAGTGCTATAATACGTA 58.459 34.615 0.00 0.00 0.00 3.57
2237 2298 6.395629 ACAAAGTGACAGTGCTATAATACGT 58.604 36.000 0.00 0.00 0.00 3.57
2238 2299 6.887376 ACAAAGTGACAGTGCTATAATACG 57.113 37.500 0.00 0.00 0.00 3.06
2305 2375 9.480861 CCTGATATCCAAGTACTTCCTGATATA 57.519 37.037 20.92 13.53 0.00 0.86
2306 2376 7.958583 ACCTGATATCCAAGTACTTCCTGATAT 59.041 37.037 20.98 20.98 0.00 1.63
2397 2467 6.832384 AGAGATGCACTGATCCATGTTATTTT 59.168 34.615 0.00 0.00 0.00 1.82
2401 2471 4.406649 TCAGAGATGCACTGATCCATGTTA 59.593 41.667 1.56 0.00 39.10 2.41
2563 2659 4.210724 AGCAATATGCCAGCACAAAAAT 57.789 36.364 0.00 0.00 46.52 1.82
2564 2660 3.681593 AGCAATATGCCAGCACAAAAA 57.318 38.095 0.00 0.00 46.52 1.94
2571 2691 6.928520 AGGATAAATTTAGCAATATGCCAGC 58.071 36.000 14.91 0.00 46.52 4.85
2582 2702 8.084073 TCTGCATGCATTTAGGATAAATTTAGC 58.916 33.333 22.97 4.86 0.00 3.09
2698 2822 4.225942 AGCCTGGTGAATATCAGTCAAGAA 59.774 41.667 0.00 0.00 32.96 2.52
2700 2828 4.148128 AGCCTGGTGAATATCAGTCAAG 57.852 45.455 0.00 0.00 32.96 3.02
2803 2939 7.244886 TGAGTCAAGGTCTGAGATTTATTCA 57.755 36.000 0.00 0.00 33.60 2.57
2885 3021 5.782845 AGGAAAGAAGGTTCAGATCTGTACT 59.217 40.000 25.79 17.66 32.45 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.