Multiple sequence alignment - TraesCS3A01G486100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G486100 chr3A 100.000 3741 0 0 1 3741 714623321 714627061 0.000000e+00 6909.0
1 TraesCS3A01G486100 chr3A 91.331 1788 133 9 1921 3698 714594291 714592516 0.000000e+00 2423.0
2 TraesCS3A01G486100 chr3A 89.363 1852 103 29 847 2678 714604686 714602909 0.000000e+00 2242.0
3 TraesCS3A01G486100 chr3A 84.286 280 31 8 445 713 714606069 714605792 1.030000e-65 261.0
4 TraesCS3A01G486100 chr3B 87.793 1835 154 33 1425 3246 773746599 773744822 0.000000e+00 2084.0
5 TraesCS3A01G486100 chr3B 88.754 1156 96 14 1386 2538 773763028 773761904 0.000000e+00 1384.0
6 TraesCS3A01G486100 chr3B 90.424 637 52 1 1902 2538 773897295 773897922 0.000000e+00 830.0
7 TraesCS3A01G486100 chr3B 84.816 461 54 13 1 452 7062523 7062976 2.050000e-122 449.0
8 TraesCS3A01G486100 chr3B 91.304 230 16 2 3362 3589 773744599 773744826 1.010000e-80 311.0
9 TraesCS3A01G486100 chr3B 83.386 319 36 13 1427 1742 37739730 37739426 2.850000e-71 279.0
10 TraesCS3A01G486100 chr3B 79.204 452 48 21 1464 1906 773883281 773883695 4.760000e-69 272.0
11 TraesCS3A01G486100 chr3B 96.923 65 2 0 3622 3686 773744570 773744506 3.950000e-20 110.0
12 TraesCS3A01G486100 chr3B 88.764 89 8 2 682 769 450843929 450844016 1.420000e-19 108.0
13 TraesCS3A01G486100 chr3B 96.970 33 1 0 2556 2588 773761907 773761875 5.220000e-04 56.5
14 TraesCS3A01G486100 chr3D 91.964 1319 93 8 1866 3177 579425711 579424399 0.000000e+00 1836.0
15 TraesCS3A01G486100 chr3D 89.286 924 71 11 1618 2538 579583597 579584495 0.000000e+00 1133.0
16 TraesCS3A01G486100 chr3D 92.398 513 27 6 3198 3698 579397560 579397048 0.000000e+00 721.0
17 TraesCS3A01G486100 chr3D 89.286 448 32 8 4 444 330210279 330209841 7.060000e-152 547.0
18 TraesCS3A01G486100 chr3D 85.301 449 54 11 1 444 433981838 433982279 1.580000e-123 453.0
19 TraesCS3A01G486100 chr3D 83.596 445 38 19 1222 1666 579426406 579425997 5.860000e-103 385.0
20 TraesCS3A01G486100 chr3D 84.590 305 34 10 448 744 579575570 579575869 1.310000e-74 291.0
21 TraesCS3A01G486100 chr3D 81.618 136 16 1 1923 2058 579397684 579397558 1.840000e-18 104.0
22 TraesCS3A01G486100 chr3D 87.640 89 9 2 682 769 352144094 352144181 6.610000e-18 102.0
23 TraesCS3A01G486100 chr3D 97.778 45 1 0 3697 3741 579397024 579396980 1.110000e-10 78.7
24 TraesCS3A01G486100 chr3D 91.489 47 2 2 714 759 516868138 516868093 3.120000e-06 63.9
25 TraesCS3A01G486100 chr7B 88.528 462 44 8 1 462 491974854 491974402 5.460000e-153 551.0
26 TraesCS3A01G486100 chr7B 95.238 42 1 1 721 761 164965468 164965427 8.670000e-07 65.8
27 TraesCS3A01G486100 chr6A 88.419 449 37 10 2 441 584005218 584005660 9.200000e-146 527.0
28 TraesCS3A01G486100 chr2A 87.696 447 44 7 1 444 741824925 741825363 9.270000e-141 510.0
29 TraesCS3A01G486100 chr2A 86.463 458 49 11 1 452 342440295 342439845 1.210000e-134 490.0
30 TraesCS3A01G486100 chr5A 86.463 458 43 18 4 453 672753914 672753468 5.620000e-133 484.0
31 TraesCS3A01G486100 chr1A 84.881 463 47 16 1 452 470501400 470501850 2.650000e-121 446.0
32 TraesCS3A01G486100 chr4A 79.292 565 56 26 1458 2012 714667349 714667862 4.630000e-89 339.0
33 TraesCS3A01G486100 chr2B 85.849 318 30 8 1427 1742 120491229 120491533 1.300000e-84 324.0
34 TraesCS3A01G486100 chr2B 84.906 265 33 6 1480 1742 315136402 315136661 1.030000e-65 261.0
35 TraesCS3A01G486100 chr2B 89.873 79 7 1 684 761 353585079 353585157 2.380000e-17 100.0
36 TraesCS3A01G486100 chr1B 84.906 318 33 9 1427 1742 670761394 670761698 1.310000e-79 307.0
37 TraesCS3A01G486100 chr1B 90.789 76 6 1 687 761 560219614 560219689 2.380000e-17 100.0
38 TraesCS3A01G486100 chr4B 83.962 318 36 8 1427 1742 622342320 622342016 1.310000e-74 291.0
39 TraesCS3A01G486100 chr2D 87.654 81 9 1 681 761 13640435 13640356 3.980000e-15 93.5
40 TraesCS3A01G486100 chr5D 86.420 81 10 1 682 761 354943604 354943684 1.850000e-13 87.9
41 TraesCS3A01G486100 chr5B 91.111 45 4 0 710 754 708237911 708237867 1.120000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G486100 chr3A 714623321 714627061 3740 False 6909.000000 6909 100.0000 1 3741 1 chr3A.!!$F1 3740
1 TraesCS3A01G486100 chr3A 714592516 714594291 1775 True 2423.000000 2423 91.3310 1921 3698 1 chr3A.!!$R1 1777
2 TraesCS3A01G486100 chr3A 714602909 714606069 3160 True 1251.500000 2242 86.8245 445 2678 2 chr3A.!!$R2 2233
3 TraesCS3A01G486100 chr3B 773744506 773746599 2093 True 1097.000000 2084 92.3580 1425 3686 2 chr3B.!!$R2 2261
4 TraesCS3A01G486100 chr3B 773897295 773897922 627 False 830.000000 830 90.4240 1902 2538 1 chr3B.!!$F5 636
5 TraesCS3A01G486100 chr3B 773761875 773763028 1153 True 720.250000 1384 92.8620 1386 2588 2 chr3B.!!$R3 1202
6 TraesCS3A01G486100 chr3D 579583597 579584495 898 False 1133.000000 1133 89.2860 1618 2538 1 chr3D.!!$F4 920
7 TraesCS3A01G486100 chr3D 579424399 579426406 2007 True 1110.500000 1836 87.7800 1222 3177 2 chr3D.!!$R4 1955
8 TraesCS3A01G486100 chr3D 579396980 579397684 704 True 301.233333 721 90.5980 1923 3741 3 chr3D.!!$R3 1818
9 TraesCS3A01G486100 chr4A 714667349 714667862 513 False 339.000000 339 79.2920 1458 2012 1 chr4A.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.179181 GGTCGTATGTGAAGACGCGA 60.179 55.0 15.93 0.00 37.42 5.87 F
851 1849 0.389757 GGGTGGACTTATCTCTCCGC 59.610 60.0 0.00 0.00 36.48 5.54 F
1406 2436 0.106167 ATCCTGTAGCTAGCCCACGA 60.106 55.0 12.13 8.44 0.00 4.35 F
2121 3305 0.249489 GACATACATCGCCGCCTTCT 60.249 55.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1114 2113 0.389166 CGGAGGAGTGAGCAACAGAC 60.389 60.0 0.0 0.0 0.00 3.51 R
2061 3245 0.028770 CGGCAGCGAAAAGTTTGACA 59.971 50.0 0.0 0.0 0.00 3.58 R
2338 3522 0.032615 ACCCTCAACAAAGTGCCCAA 60.033 50.0 0.0 0.0 0.00 4.12 R
3191 4381 1.029408 TGATGCCCGTTACATGTGGC 61.029 55.0 16.1 16.1 44.27 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.096003 ACGGGAGTCATTGGGCCG 62.096 66.667 0.00 0.00 40.62 6.13
18 19 3.781307 CGGGAGTCATTGGGCCGA 61.781 66.667 0.00 0.00 0.00 5.54
19 20 2.190578 GGGAGTCATTGGGCCGAG 59.809 66.667 0.00 0.00 0.00 4.63
20 21 2.670148 GGGAGTCATTGGGCCGAGT 61.670 63.158 0.00 0.00 0.00 4.18
21 22 1.450312 GGAGTCATTGGGCCGAGTG 60.450 63.158 3.69 3.69 0.00 3.51
22 23 1.596934 GAGTCATTGGGCCGAGTGA 59.403 57.895 8.94 8.94 0.00 3.41
23 24 0.460987 GAGTCATTGGGCCGAGTGAG 60.461 60.000 13.32 0.00 0.00 3.51
24 25 0.904865 AGTCATTGGGCCGAGTGAGA 60.905 55.000 13.32 0.00 0.00 3.27
25 26 0.741221 GTCATTGGGCCGAGTGAGAC 60.741 60.000 13.32 4.71 0.00 3.36
26 27 0.904865 TCATTGGGCCGAGTGAGACT 60.905 55.000 8.94 0.00 0.00 3.24
27 28 0.742281 CATTGGGCCGAGTGAGACTG 60.742 60.000 4.06 0.00 0.00 3.51
28 29 1.903877 ATTGGGCCGAGTGAGACTGG 61.904 60.000 0.00 0.00 0.00 4.00
29 30 2.997897 GGGCCGAGTGAGACTGGT 60.998 66.667 0.00 0.00 0.00 4.00
30 31 2.574399 GGCCGAGTGAGACTGGTC 59.426 66.667 0.00 0.00 0.00 4.02
31 32 2.179517 GCCGAGTGAGACTGGTCG 59.820 66.667 0.00 0.00 34.09 4.79
32 33 2.627737 GCCGAGTGAGACTGGTCGT 61.628 63.158 0.00 0.00 34.09 4.34
33 34 1.303799 GCCGAGTGAGACTGGTCGTA 61.304 60.000 0.00 0.00 34.09 3.43
34 35 1.380524 CCGAGTGAGACTGGTCGTAT 58.619 55.000 0.00 0.00 34.09 3.06
35 36 1.064208 CCGAGTGAGACTGGTCGTATG 59.936 57.143 0.00 0.00 34.09 2.39
36 37 1.738350 CGAGTGAGACTGGTCGTATGT 59.262 52.381 0.00 0.00 34.09 2.29
37 38 2.476352 CGAGTGAGACTGGTCGTATGTG 60.476 54.545 0.00 0.00 34.09 3.21
38 39 2.747989 GAGTGAGACTGGTCGTATGTGA 59.252 50.000 0.00 0.00 34.09 3.58
39 40 3.154710 AGTGAGACTGGTCGTATGTGAA 58.845 45.455 0.00 0.00 34.09 3.18
40 41 3.191581 AGTGAGACTGGTCGTATGTGAAG 59.808 47.826 0.00 0.00 34.09 3.02
41 42 3.190744 GTGAGACTGGTCGTATGTGAAGA 59.809 47.826 0.00 0.00 34.09 2.87
42 43 3.190744 TGAGACTGGTCGTATGTGAAGAC 59.809 47.826 0.00 0.00 35.96 3.01
43 44 2.161808 AGACTGGTCGTATGTGAAGACG 59.838 50.000 0.00 0.00 37.42 4.18
44 45 1.269166 CTGGTCGTATGTGAAGACGC 58.731 55.000 0.00 0.00 37.42 5.19
45 46 0.455464 TGGTCGTATGTGAAGACGCG 60.455 55.000 3.53 3.53 37.42 6.01
46 47 0.179181 GGTCGTATGTGAAGACGCGA 60.179 55.000 15.93 0.00 37.42 5.87
47 48 0.905839 GTCGTATGTGAAGACGCGAC 59.094 55.000 15.93 6.86 38.93 5.19
48 49 0.518195 TCGTATGTGAAGACGCGACA 59.482 50.000 15.93 6.57 38.93 4.35
49 50 1.069091 TCGTATGTGAAGACGCGACAA 60.069 47.619 15.93 0.00 38.93 3.18
50 51 1.717113 CGTATGTGAAGACGCGACAAA 59.283 47.619 15.93 2.71 31.49 2.83
51 52 2.222289 CGTATGTGAAGACGCGACAAAG 60.222 50.000 15.93 0.00 31.49 2.77
52 53 2.148916 ATGTGAAGACGCGACAAAGA 57.851 45.000 15.93 0.00 0.00 2.52
53 54 1.929230 TGTGAAGACGCGACAAAGAA 58.071 45.000 15.93 0.00 0.00 2.52
54 55 2.272678 TGTGAAGACGCGACAAAGAAA 58.727 42.857 15.93 0.00 0.00 2.52
55 56 2.673862 TGTGAAGACGCGACAAAGAAAA 59.326 40.909 15.93 0.00 0.00 2.29
56 57 3.125487 TGTGAAGACGCGACAAAGAAAAA 59.875 39.130 15.93 0.00 0.00 1.94
57 58 3.719352 GTGAAGACGCGACAAAGAAAAAG 59.281 43.478 15.93 0.00 0.00 2.27
58 59 3.619483 TGAAGACGCGACAAAGAAAAAGA 59.381 39.130 15.93 0.00 0.00 2.52
59 60 4.272504 TGAAGACGCGACAAAGAAAAAGAT 59.727 37.500 15.93 0.00 0.00 2.40
60 61 4.813296 AGACGCGACAAAGAAAAAGATT 57.187 36.364 15.93 0.00 0.00 2.40
61 62 4.773510 AGACGCGACAAAGAAAAAGATTC 58.226 39.130 15.93 0.00 0.00 2.52
62 63 4.272504 AGACGCGACAAAGAAAAAGATTCA 59.727 37.500 15.93 0.00 0.00 2.57
63 64 5.049405 AGACGCGACAAAGAAAAAGATTCAT 60.049 36.000 15.93 0.00 0.00 2.57
64 65 5.519722 ACGCGACAAAGAAAAAGATTCATT 58.480 33.333 15.93 0.00 0.00 2.57
65 66 5.977129 ACGCGACAAAGAAAAAGATTCATTT 59.023 32.000 15.93 0.00 0.00 2.32
66 67 6.142320 ACGCGACAAAGAAAAAGATTCATTTC 59.858 34.615 15.93 6.78 36.11 2.17
67 68 6.142161 CGCGACAAAGAAAAAGATTCATTTCA 59.858 34.615 0.00 0.00 37.87 2.69
68 69 7.148918 CGCGACAAAGAAAAAGATTCATTTCAT 60.149 33.333 0.00 3.53 37.87 2.57
69 70 9.128107 GCGACAAAGAAAAAGATTCATTTCATA 57.872 29.630 13.88 0.00 37.87 2.15
108 109 7.894376 AATTGAACTAAAACAATGCATCAGG 57.106 32.000 0.00 0.00 36.92 3.86
109 110 6.403866 TTGAACTAAAACAATGCATCAGGT 57.596 33.333 0.00 0.00 0.00 4.00
110 111 5.771469 TGAACTAAAACAATGCATCAGGTG 58.229 37.500 0.00 0.00 0.00 4.00
111 112 4.789012 ACTAAAACAATGCATCAGGTGG 57.211 40.909 0.00 0.00 0.00 4.61
112 113 3.511146 ACTAAAACAATGCATCAGGTGGG 59.489 43.478 0.00 0.00 0.00 4.61
113 114 0.609662 AAACAATGCATCAGGTGGGC 59.390 50.000 0.00 0.00 0.00 5.36
114 115 0.542467 AACAATGCATCAGGTGGGCA 60.542 50.000 0.00 0.00 42.43 5.36
116 117 1.063792 ACAATGCATCAGGTGGGCATA 60.064 47.619 0.00 0.00 46.77 3.14
117 118 2.244695 CAATGCATCAGGTGGGCATAT 58.755 47.619 0.00 1.05 46.77 1.78
118 119 2.631062 CAATGCATCAGGTGGGCATATT 59.369 45.455 0.00 0.00 46.77 1.28
119 120 2.457813 TGCATCAGGTGGGCATATTT 57.542 45.000 0.00 0.00 31.58 1.40
120 121 2.309613 TGCATCAGGTGGGCATATTTC 58.690 47.619 0.00 0.00 31.58 2.17
121 122 2.309613 GCATCAGGTGGGCATATTTCA 58.690 47.619 0.00 0.00 0.00 2.69
122 123 2.694628 GCATCAGGTGGGCATATTTCAA 59.305 45.455 0.00 0.00 0.00 2.69
123 124 3.132646 GCATCAGGTGGGCATATTTCAAA 59.867 43.478 0.00 0.00 0.00 2.69
124 125 4.382901 GCATCAGGTGGGCATATTTCAAAA 60.383 41.667 0.00 0.00 0.00 2.44
125 126 5.732633 CATCAGGTGGGCATATTTCAAAAA 58.267 37.500 0.00 0.00 0.00 1.94
126 127 6.350906 CATCAGGTGGGCATATTTCAAAAAT 58.649 36.000 0.00 0.00 0.00 1.82
127 128 6.371595 TCAGGTGGGCATATTTCAAAAATT 57.628 33.333 0.00 0.00 0.00 1.82
128 129 6.405538 TCAGGTGGGCATATTTCAAAAATTC 58.594 36.000 0.00 0.00 0.00 2.17
129 130 6.013898 TCAGGTGGGCATATTTCAAAAATTCA 60.014 34.615 0.00 0.00 0.00 2.57
130 131 6.092533 CAGGTGGGCATATTTCAAAAATTCAC 59.907 38.462 0.00 0.00 0.00 3.18
131 132 5.353956 GGTGGGCATATTTCAAAAATTCACC 59.646 40.000 0.00 0.00 34.04 4.02
132 133 5.936956 GTGGGCATATTTCAAAAATTCACCA 59.063 36.000 0.00 0.00 0.00 4.17
133 134 6.429385 GTGGGCATATTTCAAAAATTCACCAA 59.571 34.615 0.00 0.00 0.00 3.67
134 135 6.654161 TGGGCATATTTCAAAAATTCACCAAG 59.346 34.615 0.00 0.00 0.00 3.61
135 136 6.654582 GGGCATATTTCAAAAATTCACCAAGT 59.345 34.615 0.00 0.00 0.00 3.16
136 137 7.174772 GGGCATATTTCAAAAATTCACCAAGTT 59.825 33.333 0.00 0.00 0.00 2.66
137 138 8.567104 GGCATATTTCAAAAATTCACCAAGTTT 58.433 29.630 0.00 0.00 31.12 2.66
138 139 9.949174 GCATATTTCAAAAATTCACCAAGTTTT 57.051 25.926 0.00 0.00 39.72 2.43
180 181 9.774413 TTAAAGCAATTTAGCTATAGTACCTCC 57.226 33.333 0.84 0.00 45.89 4.30
181 182 6.361768 AGCAATTTAGCTATAGTACCTCCC 57.638 41.667 0.84 0.00 44.50 4.30
182 183 5.844516 AGCAATTTAGCTATAGTACCTCCCA 59.155 40.000 0.84 0.00 44.50 4.37
183 184 6.502158 AGCAATTTAGCTATAGTACCTCCCAT 59.498 38.462 0.84 0.00 44.50 4.00
184 185 7.017651 AGCAATTTAGCTATAGTACCTCCCATT 59.982 37.037 0.84 0.00 44.50 3.16
185 186 7.665974 GCAATTTAGCTATAGTACCTCCCATTT 59.334 37.037 0.84 0.00 0.00 2.32
186 187 9.574516 CAATTTAGCTATAGTACCTCCCATTTT 57.425 33.333 0.84 0.00 0.00 1.82
262 263 8.550376 ACATATTTGTGTTCTCAAAATGTTTGC 58.450 29.630 14.39 0.00 40.05 3.68
263 264 6.981762 ATTTGTGTTCTCAAAATGTTTGCA 57.018 29.167 4.58 0.00 40.05 4.08
264 265 6.791887 TTTGTGTTCTCAAAATGTTTGCAA 57.208 29.167 0.00 0.00 34.90 4.08
265 266 6.791887 TTGTGTTCTCAAAATGTTTGCAAA 57.208 29.167 8.05 8.05 0.00 3.68
266 267 6.981762 TGTGTTCTCAAAATGTTTGCAAAT 57.018 29.167 16.21 0.00 0.00 2.32
267 268 7.375106 TGTGTTCTCAAAATGTTTGCAAATT 57.625 28.000 16.21 3.46 0.00 1.82
268 269 8.484641 TGTGTTCTCAAAATGTTTGCAAATTA 57.515 26.923 16.21 8.32 0.00 1.40
269 270 8.939929 TGTGTTCTCAAAATGTTTGCAAATTAA 58.060 25.926 16.21 4.91 0.00 1.40
270 271 9.766277 GTGTTCTCAAAATGTTTGCAAATTAAA 57.234 25.926 16.21 2.29 0.00 1.52
296 297 7.745620 AAAAATCACAAACAGTACCTCCTAG 57.254 36.000 0.00 0.00 0.00 3.02
297 298 6.435292 AAATCACAAACAGTACCTCCTAGT 57.565 37.500 0.00 0.00 0.00 2.57
298 299 6.435292 AATCACAAACAGTACCTCCTAGTT 57.565 37.500 0.00 0.00 0.00 2.24
299 300 5.881923 TCACAAACAGTACCTCCTAGTTT 57.118 39.130 0.00 0.00 33.09 2.66
300 301 6.243216 TCACAAACAGTACCTCCTAGTTTT 57.757 37.500 0.00 0.00 30.68 2.43
301 302 6.655930 TCACAAACAGTACCTCCTAGTTTTT 58.344 36.000 0.00 0.00 30.68 1.94
302 303 7.794041 TCACAAACAGTACCTCCTAGTTTTTA 58.206 34.615 0.00 0.00 30.68 1.52
303 304 8.266473 TCACAAACAGTACCTCCTAGTTTTTAA 58.734 33.333 0.00 0.00 30.68 1.52
304 305 8.895737 CACAAACAGTACCTCCTAGTTTTTAAA 58.104 33.333 0.00 0.00 30.68 1.52
305 306 9.465199 ACAAACAGTACCTCCTAGTTTTTAAAA 57.535 29.630 0.00 0.00 30.68 1.52
423 424 7.712322 TTAACAACTTTTGCAAAAATTTCGC 57.288 28.000 23.92 5.76 0.00 4.70
424 425 4.330313 ACAACTTTTGCAAAAATTTCGCG 58.670 34.783 23.92 13.49 0.00 5.87
425 426 4.143009 ACAACTTTTGCAAAAATTTCGCGT 60.143 33.333 23.92 14.09 0.00 6.01
426 427 4.591998 ACTTTTGCAAAAATTTCGCGTT 57.408 31.818 23.92 0.00 0.00 4.84
427 428 4.573802 ACTTTTGCAAAAATTTCGCGTTC 58.426 34.783 23.92 0.00 0.00 3.95
428 429 4.328712 ACTTTTGCAAAAATTTCGCGTTCT 59.671 33.333 23.92 0.00 0.00 3.01
429 430 5.517054 ACTTTTGCAAAAATTTCGCGTTCTA 59.483 32.000 23.92 0.00 0.00 2.10
430 431 5.950965 TTTGCAAAAATTTCGCGTTCTAA 57.049 30.435 10.02 0.00 0.00 2.10
431 432 5.950965 TTGCAAAAATTTCGCGTTCTAAA 57.049 30.435 5.77 0.00 0.00 1.85
432 433 5.950965 TGCAAAAATTTCGCGTTCTAAAA 57.049 30.435 5.77 0.00 0.00 1.52
433 434 6.517914 TGCAAAAATTTCGCGTTCTAAAAT 57.482 29.167 5.77 0.83 0.00 1.82
434 435 7.624706 TGCAAAAATTTCGCGTTCTAAAATA 57.375 28.000 5.77 0.00 0.00 1.40
435 436 8.233692 TGCAAAAATTTCGCGTTCTAAAATAT 57.766 26.923 5.77 0.00 0.00 1.28
436 437 9.343103 TGCAAAAATTTCGCGTTCTAAAATATA 57.657 25.926 5.77 0.00 0.00 0.86
497 499 2.747396 AACCGCATGCACATTTGATT 57.253 40.000 19.57 0.00 0.00 2.57
509 511 5.750547 TGCACATTTGATTAACAAGCGAAAA 59.249 32.000 0.00 0.00 39.77 2.29
518 520 9.853555 TTGATTAACAAGCGAAAATCATAATGT 57.146 25.926 0.00 0.00 37.96 2.71
524 526 6.740905 ACAAGCGAAAATCATAATGTTACGTG 59.259 34.615 0.00 0.00 0.00 4.49
525 527 6.417191 AGCGAAAATCATAATGTTACGTGT 57.583 33.333 0.00 0.00 0.00 4.49
539 541 6.914760 TGTTACGTGTGAGAAAAACAAAAC 57.085 33.333 0.00 0.00 0.00 2.43
547 549 5.580297 TGTGAGAAAAACAAAACCAATGCTC 59.420 36.000 0.00 0.00 0.00 4.26
561 563 4.082571 ACCAATGCTCTAACATGCTTCAAC 60.083 41.667 0.00 0.00 0.00 3.18
567 569 5.163723 TGCTCTAACATGCTTCAACAATAGC 60.164 40.000 0.00 0.00 37.89 2.97
568 570 5.065731 GCTCTAACATGCTTCAACAATAGCT 59.934 40.000 0.00 0.00 38.22 3.32
570 572 7.452880 TCTAACATGCTTCAACAATAGCTTT 57.547 32.000 0.00 0.00 38.22 3.51
572 574 6.774354 AACATGCTTCAACAATAGCTTTTG 57.226 33.333 14.46 14.46 38.22 2.44
582 584 8.220755 TCAACAATAGCTTTTGTAGAACACTT 57.779 30.769 20.73 2.42 38.85 3.16
584 586 9.301153 CAACAATAGCTTTTGTAGAACACTTTT 57.699 29.630 20.73 1.09 38.85 2.27
649 657 9.893305 AAATTTGCACTTAGTTAGAATACACAC 57.107 29.630 0.00 0.00 0.00 3.82
650 658 8.615878 ATTTGCACTTAGTTAGAATACACACA 57.384 30.769 0.00 0.00 0.00 3.72
709 721 6.966435 AAGTGTCACAATTTTGAACAAAGG 57.034 33.333 5.62 0.00 32.42 3.11
710 722 6.036577 AGTGTCACAATTTTGAACAAAGGT 57.963 33.333 5.62 0.00 32.42 3.50
711 723 6.463360 AGTGTCACAATTTTGAACAAAGGTT 58.537 32.000 5.62 0.00 40.76 3.50
712 724 7.607250 AGTGTCACAATTTTGAACAAAGGTTA 58.393 30.769 5.62 0.00 37.36 2.85
713 725 8.091449 AGTGTCACAATTTTGAACAAAGGTTAA 58.909 29.630 5.62 0.00 37.36 2.01
714 726 8.713271 GTGTCACAATTTTGAACAAAGGTTAAA 58.287 29.630 0.00 0.00 37.36 1.52
720 732 9.914923 CAATTTTGAACAAAGGTTAAACTAAGC 57.085 29.630 0.00 0.00 37.36 3.09
737 749 5.054477 ACTAAGCTTAGTTCAAAACTGCGA 58.946 37.500 29.48 0.00 40.96 5.10
739 751 2.221055 AGCTTAGTTCAAAACTGCGACG 59.779 45.455 2.65 0.00 42.84 5.12
740 752 2.560896 CTTAGTTCAAAACTGCGACGC 58.439 47.619 14.19 14.19 42.84 5.19
749 761 2.611974 AACTGCGACGCTTATTTTGG 57.388 45.000 22.08 3.69 0.00 3.28
752 764 2.351726 ACTGCGACGCTTATTTTGGATC 59.648 45.455 22.08 0.00 0.00 3.36
754 766 1.591158 GCGACGCTTATTTTGGATCGA 59.409 47.619 13.73 0.00 0.00 3.59
755 767 2.347661 GCGACGCTTATTTTGGATCGAG 60.348 50.000 13.73 0.00 0.00 4.04
756 768 2.218759 CGACGCTTATTTTGGATCGAGG 59.781 50.000 0.00 0.00 0.00 4.63
758 770 2.169769 ACGCTTATTTTGGATCGAGGGA 59.830 45.455 0.00 0.00 0.00 4.20
760 772 3.741388 CGCTTATTTTGGATCGAGGGAGT 60.741 47.826 0.00 0.00 0.00 3.85
761 773 4.200092 GCTTATTTTGGATCGAGGGAGTT 58.800 43.478 0.00 0.00 0.00 3.01
762 774 4.640647 GCTTATTTTGGATCGAGGGAGTTT 59.359 41.667 0.00 0.00 0.00 2.66
766 778 4.301072 TTTGGATCGAGGGAGTTTGAAT 57.699 40.909 0.00 0.00 0.00 2.57
767 779 4.301072 TTGGATCGAGGGAGTTTGAATT 57.699 40.909 0.00 0.00 0.00 2.17
768 780 4.301072 TGGATCGAGGGAGTTTGAATTT 57.699 40.909 0.00 0.00 0.00 1.82
830 850 1.607801 GGGCTCCAAATTGCTGACCC 61.608 60.000 0.00 0.00 0.00 4.46
837 857 3.583882 AATTGCTGACCCCGGGTGG 62.584 63.158 21.85 7.60 35.25 4.61
851 1849 0.389757 GGGTGGACTTATCTCTCCGC 59.610 60.000 0.00 0.00 36.48 5.54
853 1851 1.404843 GTGGACTTATCTCTCCGCCT 58.595 55.000 0.00 0.00 31.78 5.52
883 1881 0.542702 CACCTGGGCCAAACCTGAAT 60.543 55.000 8.04 0.00 39.10 2.57
905 1903 2.196319 GGCTTCCTCCTTGCCATTG 58.804 57.895 0.00 0.00 45.46 2.82
906 1904 1.325476 GGCTTCCTCCTTGCCATTGG 61.325 60.000 0.00 0.00 45.46 3.16
935 1934 2.821366 GACTGGCCCACTGATGCG 60.821 66.667 0.00 0.00 0.00 4.73
960 1959 4.463879 CCAGCCCAGGACGCTCAG 62.464 72.222 0.00 0.00 33.17 3.35
962 1961 3.699894 AGCCCAGGACGCTCAGTG 61.700 66.667 0.00 0.00 0.00 3.66
968 1967 2.183046 GGACGCTCAGTGCTCCTC 59.817 66.667 5.98 0.00 38.25 3.71
969 1968 2.183046 GACGCTCAGTGCTCCTCC 59.817 66.667 0.00 0.00 40.11 4.30
970 1969 2.283532 ACGCTCAGTGCTCCTCCT 60.284 61.111 0.00 0.00 40.11 3.69
971 1970 2.278182 GACGCTCAGTGCTCCTCCTC 62.278 65.000 0.00 0.00 40.11 3.71
972 1971 2.899505 GCTCAGTGCTCCTCCTCC 59.100 66.667 0.00 0.00 38.95 4.30
973 1972 2.730524 GCTCAGTGCTCCTCCTCCC 61.731 68.421 0.00 0.00 38.95 4.30
974 1973 1.001503 CTCAGTGCTCCTCCTCCCT 59.998 63.158 0.00 0.00 0.00 4.20
975 1974 1.000993 TCAGTGCTCCTCCTCCCTC 59.999 63.158 0.00 0.00 0.00 4.30
988 1987 0.689080 CTCCCTCCTGGCTTCTGCTA 60.689 60.000 0.00 0.00 39.59 3.49
1030 2029 0.541863 CTCTGAACCCTACCGCCAAT 59.458 55.000 0.00 0.00 0.00 3.16
1063 2062 4.446413 CGGCCGGAGCGTAACCTT 62.446 66.667 20.10 0.00 41.24 3.50
1064 2063 2.510918 GGCCGGAGCGTAACCTTC 60.511 66.667 5.05 0.00 41.24 3.46
1071 2070 2.510918 GCGTAACCTTCCCGGCTC 60.511 66.667 0.00 0.00 35.61 4.70
1105 2104 2.746277 GGCACCGTCTTCCGCAAT 60.746 61.111 0.00 0.00 34.38 3.56
1109 2108 1.740296 ACCGTCTTCCGCAATTCCG 60.740 57.895 0.00 0.00 34.38 4.30
1114 2113 0.458889 TCTTCCGCAATTCCGTACCG 60.459 55.000 0.00 0.00 0.00 4.02
1117 2116 1.153706 CCGCAATTCCGTACCGTCT 60.154 57.895 0.00 0.00 0.00 4.18
1119 2118 0.734942 CGCAATTCCGTACCGTCTGT 60.735 55.000 0.00 0.00 0.00 3.41
1157 2165 2.963371 GACCTCAAGACCGCTCGT 59.037 61.111 0.00 0.00 0.00 4.18
1241 2256 1.975407 CAGAGCAAGGGCAAGGTGG 60.975 63.158 0.00 0.00 44.61 4.61
1397 2427 6.188407 TGTGACTTACTCTTATCCTGTAGCT 58.812 40.000 0.00 0.00 0.00 3.32
1398 2428 7.344134 TGTGACTTACTCTTATCCTGTAGCTA 58.656 38.462 0.00 0.00 0.00 3.32
1400 2430 6.487331 TGACTTACTCTTATCCTGTAGCTAGC 59.513 42.308 6.62 6.62 0.00 3.42
1401 2431 5.771165 ACTTACTCTTATCCTGTAGCTAGCC 59.229 44.000 12.13 0.00 0.00 3.93
1402 2432 3.502356 ACTCTTATCCTGTAGCTAGCCC 58.498 50.000 12.13 2.72 0.00 5.19
1403 2433 3.117093 ACTCTTATCCTGTAGCTAGCCCA 60.117 47.826 12.13 7.84 0.00 5.36
1404 2434 3.231818 TCTTATCCTGTAGCTAGCCCAC 58.768 50.000 12.13 10.62 0.00 4.61
1405 2435 1.617322 TATCCTGTAGCTAGCCCACG 58.383 55.000 12.13 6.53 0.00 4.94
1406 2436 0.106167 ATCCTGTAGCTAGCCCACGA 60.106 55.000 12.13 8.44 0.00 4.35
1407 2437 0.106167 TCCTGTAGCTAGCCCACGAT 60.106 55.000 12.13 0.00 0.00 3.73
1408 2438 1.144298 TCCTGTAGCTAGCCCACGATA 59.856 52.381 12.13 0.00 0.00 2.92
1409 2439 1.269998 CCTGTAGCTAGCCCACGATAC 59.730 57.143 12.13 6.85 0.00 2.24
1410 2440 1.954382 CTGTAGCTAGCCCACGATACA 59.046 52.381 12.13 11.23 0.00 2.29
1411 2441 1.954382 TGTAGCTAGCCCACGATACAG 59.046 52.381 12.13 0.00 0.00 2.74
1412 2442 1.269998 GTAGCTAGCCCACGATACAGG 59.730 57.143 12.13 0.00 0.00 4.00
1413 2443 0.106167 AGCTAGCCCACGATACAGGA 60.106 55.000 12.13 0.00 0.00 3.86
1414 2444 0.969894 GCTAGCCCACGATACAGGAT 59.030 55.000 2.29 0.00 0.00 3.24
1415 2445 1.344763 GCTAGCCCACGATACAGGATT 59.655 52.381 2.29 0.00 0.00 3.01
1416 2446 2.610727 GCTAGCCCACGATACAGGATTC 60.611 54.545 2.29 0.00 0.00 2.52
1417 2447 1.496060 AGCCCACGATACAGGATTCA 58.504 50.000 0.00 0.00 0.00 2.57
1418 2448 1.414181 AGCCCACGATACAGGATTCAG 59.586 52.381 0.00 0.00 0.00 3.02
1419 2449 1.412710 GCCCACGATACAGGATTCAGA 59.587 52.381 0.00 0.00 0.00 3.27
1420 2450 2.803492 GCCCACGATACAGGATTCAGAC 60.803 54.545 0.00 0.00 0.00 3.51
1431 2461 6.305272 ACAGGATTCAGACATTCAGTACAT 57.695 37.500 0.00 0.00 0.00 2.29
1459 2489 3.319137 TCTGTAACTGCTACAAGCCTG 57.681 47.619 0.00 0.00 41.51 4.85
1472 2502 0.676151 AAGCCTGCAAGCAGAGCTAC 60.676 55.000 26.67 12.13 46.30 3.58
1513 2543 4.002982 CCTCGATGAATTCAAGTCAACCA 58.997 43.478 13.09 0.00 0.00 3.67
1533 2570 4.141482 ACCATTTATCCCGTGTGCTAGATT 60.141 41.667 0.00 0.00 0.00 2.40
1556 2594 2.051334 TCAGTGTGTGGTTTCCTTGG 57.949 50.000 0.00 0.00 0.00 3.61
1557 2595 1.032014 CAGTGTGTGGTTTCCTTGGG 58.968 55.000 0.00 0.00 0.00 4.12
1558 2596 0.923358 AGTGTGTGGTTTCCTTGGGA 59.077 50.000 0.00 0.00 0.00 4.37
1666 2705 3.005155 GGTTTGCTGCAGAATCTGAAACT 59.995 43.478 20.43 0.00 32.44 2.66
1683 2724 8.842358 TCTGAAACTAACCAATTAACTACAGG 57.158 34.615 0.00 0.00 0.00 4.00
1695 2736 6.567602 ATTAACTACAGGATCTGAAGCCTT 57.432 37.500 1.59 0.00 38.44 4.35
1798 2842 8.485591 CGTTAATGTCGATTTCTAATTCTACCC 58.514 37.037 0.00 0.00 0.00 3.69
1835 2879 5.764686 TGAGCTATAGTTGTTTATGCCATGG 59.235 40.000 7.63 7.63 0.00 3.66
1864 2908 9.895138 TGGGATACTTTTCTGGTTAGTTATAAC 57.105 33.333 7.57 7.57 40.56 1.89
1900 3078 1.241315 TTTAGCCCGGCTTGCTTGAC 61.241 55.000 19.35 0.00 40.44 3.18
2012 3196 2.225091 TGAACTTCATTGCCTCATGGGT 60.225 45.455 0.00 0.00 37.43 4.51
2013 3197 2.610438 ACTTCATTGCCTCATGGGTT 57.390 45.000 0.00 0.00 37.43 4.11
2014 3198 2.173519 ACTTCATTGCCTCATGGGTTG 58.826 47.619 0.00 0.00 37.43 3.77
2015 3199 2.173519 CTTCATTGCCTCATGGGTTGT 58.826 47.619 0.00 0.00 37.43 3.32
2016 3200 3.245229 ACTTCATTGCCTCATGGGTTGTA 60.245 43.478 0.00 0.00 37.43 2.41
2017 3201 3.668141 TCATTGCCTCATGGGTTGTAT 57.332 42.857 0.00 0.00 37.43 2.29
2018 3202 3.554934 TCATTGCCTCATGGGTTGTATC 58.445 45.455 0.00 0.00 37.43 2.24
2019 3203 3.053768 TCATTGCCTCATGGGTTGTATCA 60.054 43.478 0.00 0.00 37.43 2.15
2020 3204 2.418368 TGCCTCATGGGTTGTATCAC 57.582 50.000 0.00 0.00 37.43 3.06
2061 3245 2.356535 GGACTCCCTTCATCTTGTGCAT 60.357 50.000 0.00 0.00 0.00 3.96
2071 3255 5.518848 TCATCTTGTGCATGTCAAACTTT 57.481 34.783 0.00 0.00 0.00 2.66
2073 3257 5.978919 TCATCTTGTGCATGTCAAACTTTTC 59.021 36.000 0.00 0.00 0.00 2.29
2121 3305 0.249489 GACATACATCGCCGCCTTCT 60.249 55.000 0.00 0.00 0.00 2.85
2154 3338 1.372997 CCGTACAGTTGCTCGTGCT 60.373 57.895 11.19 0.00 40.48 4.40
2338 3522 1.255667 AATGTCGGAGGTGGTACGCT 61.256 55.000 0.00 0.00 39.78 5.07
2346 3530 2.032071 GTGGTACGCTTGGGCACT 59.968 61.111 0.00 0.00 38.60 4.40
2347 3531 1.599797 GTGGTACGCTTGGGCACTT 60.600 57.895 0.00 0.00 38.60 3.16
2531 3715 1.918262 TGTGCCTTGGAGGATCTCATT 59.082 47.619 0.00 0.00 37.67 2.57
2550 3734 7.050377 TCTCATTCTCTGTAATGATCCCAAAC 58.950 38.462 8.06 0.00 43.16 2.93
2556 3740 6.440647 TCTCTGTAATGATCCCAAACTGTACT 59.559 38.462 0.00 0.00 0.00 2.73
2632 3816 3.059733 TGTGTACGGCAAACATCGTTAAC 60.060 43.478 0.00 0.00 40.31 2.01
2718 3902 5.832539 ACTGCCTTATATGGTCTAATGCT 57.167 39.130 6.53 0.00 0.00 3.79
2736 3920 2.091610 TGCTGAGGCTCCTAGTGATAGT 60.092 50.000 12.86 0.00 39.59 2.12
2737 3921 2.295909 GCTGAGGCTCCTAGTGATAGTG 59.704 54.545 12.86 0.00 35.22 2.74
2750 3934 2.749076 GTGATAGTGCACTGCATTTGGA 59.251 45.455 29.57 6.90 41.91 3.53
2765 3949 5.243507 TGCATTTGGATGAAGTAATGTGTGT 59.756 36.000 0.00 0.00 35.16 3.72
2922 4109 3.880490 GGTCAATATATCCGGCAACAACA 59.120 43.478 0.00 0.00 0.00 3.33
2925 4112 5.065988 GTCAATATATCCGGCAACAACAGTT 59.934 40.000 0.00 0.00 0.00 3.16
2937 4124 4.440112 GCAACAACAGTTAGTTTCCAGCTT 60.440 41.667 0.00 0.00 38.74 3.74
2938 4125 4.900635 ACAACAGTTAGTTTCCAGCTTG 57.099 40.909 0.00 0.00 38.74 4.01
2957 4144 5.007430 AGCTTGACATGAAAGAATATCAGCG 59.993 40.000 14.46 0.00 0.00 5.18
3116 4306 6.317391 GCTCATTTAATGCCTTGTTCTCTACT 59.683 38.462 0.00 0.00 0.00 2.57
3165 4355 8.599055 ATGTATCTTATGACTTACATGTGCAG 57.401 34.615 9.11 6.97 39.77 4.41
3171 4361 2.263077 GACTTACATGTGCAGGAGTCG 58.737 52.381 9.11 0.00 0.00 4.18
3173 4363 2.299013 ACTTACATGTGCAGGAGTCGAA 59.701 45.455 9.11 0.00 0.00 3.71
3214 4404 0.311790 CATGTAACGGGCATCATGGC 59.688 55.000 1.56 1.56 42.88 4.40
3246 4441 1.119684 AACACCTTGAAACCCCAAGC 58.880 50.000 0.00 0.00 41.53 4.01
3273 4494 8.859090 TGAAGTCAAATGTGATTTTTCTACCAT 58.141 29.630 0.00 0.00 34.13 3.55
3380 4601 7.344134 AGGAAGGTAAACAGTAAGAAAACACT 58.656 34.615 0.00 0.00 0.00 3.55
3389 4610 7.730364 ACAGTAAGAAAACACTGGTTAGATG 57.270 36.000 6.67 0.00 45.22 2.90
3402 4623 8.567948 ACACTGGTTAGATGTTTGTTAATGAAG 58.432 33.333 0.00 0.00 0.00 3.02
3512 4735 4.043596 AGTTCCTCATCTTATTGGAGGCT 58.956 43.478 0.00 0.00 46.24 4.58
3570 4795 8.839343 CACCAGAAATACATAACATAATCAGCA 58.161 33.333 0.00 0.00 0.00 4.41
3661 4948 8.325046 GGAATACTATTCATAGGCCTTGATTCT 58.675 37.037 12.58 5.66 34.69 2.40
3691 4978 5.734503 GCTGCCAGATAATTAGAAAAGGCAC 60.735 44.000 12.87 8.61 45.10 5.01
3695 4982 7.779798 TGCCAGATAATTAGAAAAGGCACTAAT 59.220 33.333 12.87 0.00 45.10 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.740128 CTCGGCCCAATGACTCCCG 62.740 68.421 0.00 0.00 40.25 5.14
2 3 2.190578 CTCGGCCCAATGACTCCC 59.809 66.667 0.00 0.00 0.00 4.30
3 4 1.450312 CACTCGGCCCAATGACTCC 60.450 63.158 0.00 0.00 0.00 3.85
4 5 0.460987 CTCACTCGGCCCAATGACTC 60.461 60.000 0.00 0.00 0.00 3.36
5 6 0.904865 TCTCACTCGGCCCAATGACT 60.905 55.000 0.00 0.00 0.00 3.41
6 7 0.741221 GTCTCACTCGGCCCAATGAC 60.741 60.000 0.00 0.00 0.00 3.06
7 8 0.904865 AGTCTCACTCGGCCCAATGA 60.905 55.000 0.00 0.00 0.00 2.57
8 9 0.742281 CAGTCTCACTCGGCCCAATG 60.742 60.000 0.00 0.00 0.00 2.82
9 10 1.599047 CAGTCTCACTCGGCCCAAT 59.401 57.895 0.00 0.00 0.00 3.16
10 11 2.583441 CCAGTCTCACTCGGCCCAA 61.583 63.158 0.00 0.00 0.00 4.12
11 12 2.997315 CCAGTCTCACTCGGCCCA 60.997 66.667 0.00 0.00 0.00 5.36
12 13 2.997897 ACCAGTCTCACTCGGCCC 60.998 66.667 0.00 0.00 0.00 5.80
13 14 2.574399 GACCAGTCTCACTCGGCC 59.426 66.667 0.00 0.00 0.00 6.13
14 15 1.303799 TACGACCAGTCTCACTCGGC 61.304 60.000 0.00 0.00 0.00 5.54
15 16 1.064208 CATACGACCAGTCTCACTCGG 59.936 57.143 0.00 0.00 0.00 4.63
16 17 1.738350 ACATACGACCAGTCTCACTCG 59.262 52.381 0.00 0.00 0.00 4.18
17 18 2.747989 TCACATACGACCAGTCTCACTC 59.252 50.000 0.00 0.00 0.00 3.51
18 19 2.791655 TCACATACGACCAGTCTCACT 58.208 47.619 0.00 0.00 0.00 3.41
19 20 3.190744 TCTTCACATACGACCAGTCTCAC 59.809 47.826 0.00 0.00 0.00 3.51
20 21 3.190744 GTCTTCACATACGACCAGTCTCA 59.809 47.826 0.00 0.00 0.00 3.27
21 22 3.728268 CGTCTTCACATACGACCAGTCTC 60.728 52.174 0.00 0.00 41.55 3.36
22 23 2.161808 CGTCTTCACATACGACCAGTCT 59.838 50.000 0.00 0.00 41.55 3.24
23 24 2.516923 CGTCTTCACATACGACCAGTC 58.483 52.381 0.00 0.00 41.55 3.51
24 25 1.402456 GCGTCTTCACATACGACCAGT 60.402 52.381 0.00 0.00 41.55 4.00
25 26 1.269166 GCGTCTTCACATACGACCAG 58.731 55.000 0.00 0.00 41.55 4.00
26 27 0.455464 CGCGTCTTCACATACGACCA 60.455 55.000 0.00 0.00 41.55 4.02
27 28 0.179181 TCGCGTCTTCACATACGACC 60.179 55.000 5.77 0.00 41.55 4.79
28 29 0.905839 GTCGCGTCTTCACATACGAC 59.094 55.000 5.77 0.00 41.55 4.34
29 30 0.518195 TGTCGCGTCTTCACATACGA 59.482 50.000 5.77 0.00 41.55 3.43
30 31 1.333115 TTGTCGCGTCTTCACATACG 58.667 50.000 5.77 0.00 41.92 3.06
31 32 2.984471 TCTTTGTCGCGTCTTCACATAC 59.016 45.455 5.77 0.00 0.00 2.39
32 33 3.291809 TCTTTGTCGCGTCTTCACATA 57.708 42.857 5.77 0.00 0.00 2.29
33 34 2.148916 TCTTTGTCGCGTCTTCACAT 57.851 45.000 5.77 0.00 0.00 3.21
34 35 1.929230 TTCTTTGTCGCGTCTTCACA 58.071 45.000 5.77 0.00 0.00 3.58
35 36 3.313274 TTTTCTTTGTCGCGTCTTCAC 57.687 42.857 5.77 0.00 0.00 3.18
36 37 3.619483 TCTTTTTCTTTGTCGCGTCTTCA 59.381 39.130 5.77 0.00 0.00 3.02
37 38 4.191662 TCTTTTTCTTTGTCGCGTCTTC 57.808 40.909 5.77 0.00 0.00 2.87
38 39 4.813296 ATCTTTTTCTTTGTCGCGTCTT 57.187 36.364 5.77 0.00 0.00 3.01
39 40 4.272504 TGAATCTTTTTCTTTGTCGCGTCT 59.727 37.500 5.77 0.00 0.00 4.18
40 41 4.523813 TGAATCTTTTTCTTTGTCGCGTC 58.476 39.130 5.77 0.00 0.00 5.19
41 42 4.545823 TGAATCTTTTTCTTTGTCGCGT 57.454 36.364 5.77 0.00 0.00 6.01
42 43 6.142161 TGAAATGAATCTTTTTCTTTGTCGCG 59.858 34.615 0.00 0.00 33.87 5.87
43 44 7.393551 TGAAATGAATCTTTTTCTTTGTCGC 57.606 32.000 9.43 0.00 33.87 5.19
82 83 9.421806 CCTGATGCATTGTTTTAGTTCAATTTA 57.578 29.630 0.00 0.00 32.85 1.40
83 84 7.933033 ACCTGATGCATTGTTTTAGTTCAATTT 59.067 29.630 0.00 0.00 32.85 1.82
84 85 7.385752 CACCTGATGCATTGTTTTAGTTCAATT 59.614 33.333 0.00 0.00 32.85 2.32
85 86 6.869913 CACCTGATGCATTGTTTTAGTTCAAT 59.130 34.615 0.00 0.00 35.08 2.57
86 87 6.215121 CACCTGATGCATTGTTTTAGTTCAA 58.785 36.000 0.00 0.00 0.00 2.69
87 88 5.278907 CCACCTGATGCATTGTTTTAGTTCA 60.279 40.000 0.00 0.00 0.00 3.18
88 89 5.163513 CCACCTGATGCATTGTTTTAGTTC 58.836 41.667 0.00 0.00 0.00 3.01
89 90 4.021192 CCCACCTGATGCATTGTTTTAGTT 60.021 41.667 0.00 0.00 0.00 2.24
90 91 3.511146 CCCACCTGATGCATTGTTTTAGT 59.489 43.478 0.00 0.00 0.00 2.24
91 92 3.676873 GCCCACCTGATGCATTGTTTTAG 60.677 47.826 0.00 0.00 0.00 1.85
92 93 2.233431 GCCCACCTGATGCATTGTTTTA 59.767 45.455 0.00 0.00 0.00 1.52
93 94 1.002315 GCCCACCTGATGCATTGTTTT 59.998 47.619 0.00 0.00 0.00 2.43
94 95 0.609662 GCCCACCTGATGCATTGTTT 59.390 50.000 0.00 0.00 0.00 2.83
95 96 0.542467 TGCCCACCTGATGCATTGTT 60.542 50.000 0.00 0.00 0.00 2.83
96 97 0.324923 ATGCCCACCTGATGCATTGT 60.325 50.000 0.00 0.00 42.79 2.71
97 98 1.694844 TATGCCCACCTGATGCATTG 58.305 50.000 0.00 0.00 42.79 2.82
98 99 2.688902 ATATGCCCACCTGATGCATT 57.311 45.000 0.00 0.00 42.79 3.56
99 100 2.688902 AATATGCCCACCTGATGCAT 57.311 45.000 0.00 0.00 46.68 3.96
100 101 2.309613 GAAATATGCCCACCTGATGCA 58.690 47.619 0.00 0.00 39.68 3.96
101 102 2.309613 TGAAATATGCCCACCTGATGC 58.690 47.619 0.00 0.00 0.00 3.91
102 103 5.341872 TTTTGAAATATGCCCACCTGATG 57.658 39.130 0.00 0.00 0.00 3.07
103 104 6.564557 ATTTTTGAAATATGCCCACCTGAT 57.435 33.333 0.00 0.00 0.00 2.90
104 105 6.013898 TGAATTTTTGAAATATGCCCACCTGA 60.014 34.615 0.00 0.00 0.00 3.86
105 106 6.092533 GTGAATTTTTGAAATATGCCCACCTG 59.907 38.462 0.00 0.00 0.00 4.00
106 107 6.172630 GTGAATTTTTGAAATATGCCCACCT 58.827 36.000 0.00 0.00 0.00 4.00
107 108 5.353956 GGTGAATTTTTGAAATATGCCCACC 59.646 40.000 0.00 0.00 33.48 4.61
108 109 5.936956 TGGTGAATTTTTGAAATATGCCCAC 59.063 36.000 0.00 0.00 0.00 4.61
109 110 6.119240 TGGTGAATTTTTGAAATATGCCCA 57.881 33.333 0.00 0.00 0.00 5.36
110 111 6.654582 ACTTGGTGAATTTTTGAAATATGCCC 59.345 34.615 0.00 0.00 0.00 5.36
111 112 7.671495 ACTTGGTGAATTTTTGAAATATGCC 57.329 32.000 0.00 0.00 0.00 4.40
112 113 9.949174 AAAACTTGGTGAATTTTTGAAATATGC 57.051 25.926 0.00 0.00 0.00 3.14
154 155 9.774413 GGAGGTACTATAGCTAAATTGCTTTAA 57.226 33.333 0.00 0.00 41.55 1.52
155 156 8.373220 GGGAGGTACTATAGCTAAATTGCTTTA 58.627 37.037 0.00 0.00 41.55 1.85
156 157 7.147373 TGGGAGGTACTATAGCTAAATTGCTTT 60.147 37.037 0.00 0.00 41.55 3.51
157 158 6.329197 TGGGAGGTACTATAGCTAAATTGCTT 59.671 38.462 0.00 0.00 41.55 3.91
158 159 5.844516 TGGGAGGTACTATAGCTAAATTGCT 59.155 40.000 0.00 0.00 41.55 3.91
159 160 6.110411 TGGGAGGTACTATAGCTAAATTGC 57.890 41.667 0.00 0.00 41.55 3.56
160 161 9.574516 AAAATGGGAGGTACTATAGCTAAATTG 57.425 33.333 0.00 0.00 41.55 2.32
236 237 8.550376 GCAAACATTTTGAGAACACAAATATGT 58.450 29.630 2.80 0.00 39.68 2.29
237 238 8.549548 TGCAAACATTTTGAGAACACAAATATG 58.450 29.630 2.80 0.00 39.09 1.78
238 239 8.659925 TGCAAACATTTTGAGAACACAAATAT 57.340 26.923 2.80 0.00 39.09 1.28
239 240 8.484641 TTGCAAACATTTTGAGAACACAAATA 57.515 26.923 0.00 0.00 39.09 1.40
240 241 6.981762 TGCAAACATTTTGAGAACACAAAT 57.018 29.167 2.80 0.00 39.09 2.32
241 242 6.791887 TTGCAAACATTTTGAGAACACAAA 57.208 29.167 0.00 0.00 37.87 2.83
242 243 6.791887 TTTGCAAACATTTTGAGAACACAA 57.208 29.167 8.05 0.00 0.00 3.33
243 244 6.981762 ATTTGCAAACATTTTGAGAACACA 57.018 29.167 15.41 0.00 0.00 3.72
244 245 9.766277 TTTAATTTGCAAACATTTTGAGAACAC 57.234 25.926 15.41 0.00 0.00 3.32
272 273 7.287810 ACTAGGAGGTACTGTTTGTGATTTTT 58.712 34.615 0.00 0.00 41.55 1.94
273 274 6.838382 ACTAGGAGGTACTGTTTGTGATTTT 58.162 36.000 0.00 0.00 41.55 1.82
274 275 6.435292 ACTAGGAGGTACTGTTTGTGATTT 57.565 37.500 0.00 0.00 41.55 2.17
275 276 6.435292 AACTAGGAGGTACTGTTTGTGATT 57.565 37.500 0.00 0.00 41.55 2.57
276 277 6.435292 AAACTAGGAGGTACTGTTTGTGAT 57.565 37.500 0.00 0.00 41.55 3.06
277 278 5.881923 AAACTAGGAGGTACTGTTTGTGA 57.118 39.130 0.00 0.00 41.55 3.58
278 279 6.937436 AAAAACTAGGAGGTACTGTTTGTG 57.063 37.500 0.00 0.00 41.55 3.33
279 280 9.465199 TTTTAAAAACTAGGAGGTACTGTTTGT 57.535 29.630 0.00 0.00 41.55 2.83
397 398 9.427127 GCGAAATTTTTGCAAAAGTTGTTAATA 57.573 25.926 27.00 10.73 29.81 0.98
398 399 7.163357 CGCGAAATTTTTGCAAAAGTTGTTAAT 59.837 29.630 27.00 14.85 29.81 1.40
399 400 6.462949 CGCGAAATTTTTGCAAAAGTTGTTAA 59.537 30.769 27.00 12.03 29.81 2.01
400 401 5.954349 CGCGAAATTTTTGCAAAAGTTGTTA 59.046 32.000 27.00 12.69 29.81 2.41
401 402 4.785561 CGCGAAATTTTTGCAAAAGTTGTT 59.214 33.333 27.00 16.08 29.81 2.83
402 403 4.143009 ACGCGAAATTTTTGCAAAAGTTGT 60.143 33.333 27.00 19.14 29.81 3.32
403 404 4.330313 ACGCGAAATTTTTGCAAAAGTTG 58.670 34.783 27.00 18.58 29.81 3.16
404 405 4.591998 ACGCGAAATTTTTGCAAAAGTT 57.408 31.818 22.59 22.59 30.42 2.66
405 406 4.328712 AGAACGCGAAATTTTTGCAAAAGT 59.671 33.333 22.78 18.29 0.00 2.66
406 407 4.821012 AGAACGCGAAATTTTTGCAAAAG 58.179 34.783 22.78 13.12 0.00 2.27
407 408 4.849111 AGAACGCGAAATTTTTGCAAAA 57.151 31.818 20.46 20.46 0.00 2.44
408 409 5.950965 TTAGAACGCGAAATTTTTGCAAA 57.049 30.435 15.93 8.05 0.00 3.68
409 410 5.950965 TTTAGAACGCGAAATTTTTGCAA 57.049 30.435 15.93 0.00 0.00 4.08
410 411 5.950965 TTTTAGAACGCGAAATTTTTGCA 57.049 30.435 15.93 0.00 0.00 4.08
459 460 5.870978 GCGGTTAGACACATTTTACCTTAGA 59.129 40.000 0.00 0.00 0.00 2.10
461 462 5.549347 TGCGGTTAGACACATTTTACCTTA 58.451 37.500 0.00 0.00 0.00 2.69
462 463 4.391155 TGCGGTTAGACACATTTTACCTT 58.609 39.130 0.00 0.00 0.00 3.50
497 499 8.444715 ACGTAACATTATGATTTTCGCTTGTTA 58.555 29.630 0.00 0.00 0.00 2.41
509 511 8.779303 TGTTTTTCTCACACGTAACATTATGAT 58.221 29.630 0.00 0.00 0.00 2.45
515 517 6.528774 GGTTTTGTTTTTCTCACACGTAACAT 59.471 34.615 0.00 0.00 0.00 2.71
518 520 6.010294 TGGTTTTGTTTTTCTCACACGTAA 57.990 33.333 0.00 0.00 0.00 3.18
521 523 5.723678 GCATTGGTTTTGTTTTTCTCACACG 60.724 40.000 0.00 0.00 0.00 4.49
524 526 5.812127 AGAGCATTGGTTTTGTTTTTCTCAC 59.188 36.000 0.00 0.00 0.00 3.51
525 527 5.976458 AGAGCATTGGTTTTGTTTTTCTCA 58.024 33.333 0.00 0.00 0.00 3.27
539 541 4.082625 TGTTGAAGCATGTTAGAGCATTGG 60.083 41.667 0.00 0.00 0.00 3.16
547 549 7.596248 ACAAAAGCTATTGTTGAAGCATGTTAG 59.404 33.333 0.00 0.00 40.52 2.34
590 598 0.887933 ACTTTTGTATTGCCCTGCGG 59.112 50.000 0.00 0.00 0.00 5.69
627 635 7.659799 ACATGTGTGTATTCTAACTAAGTGCAA 59.340 33.333 0.00 0.00 36.63 4.08
690 702 8.931775 AGTTTAACCTTTGTTCAAAATTGTGAC 58.068 29.630 0.00 0.00 35.87 3.67
696 708 9.884636 AAGCTTAGTTTAACCTTTGTTCAAAAT 57.115 25.926 0.00 0.00 35.87 1.82
714 726 5.050295 GTCGCAGTTTTGAACTAAGCTTAGT 60.050 40.000 29.48 29.48 45.43 2.24
720 732 2.221055 AGCGTCGCAGTTTTGAACTAAG 59.779 45.455 21.09 0.00 40.46 2.18
729 741 2.550606 TCCAAAATAAGCGTCGCAGTTT 59.449 40.909 21.09 13.49 0.00 2.66
737 749 2.169769 TCCCTCGATCCAAAATAAGCGT 59.830 45.455 0.00 0.00 0.00 5.07
739 751 3.809905 ACTCCCTCGATCCAAAATAAGC 58.190 45.455 0.00 0.00 0.00 3.09
740 752 5.880332 TCAAACTCCCTCGATCCAAAATAAG 59.120 40.000 0.00 0.00 0.00 1.73
807 819 0.390735 CAGCAATTTGGAGCCCAAGC 60.391 55.000 6.73 7.40 44.84 4.01
830 850 1.041437 GGAGAGATAAGTCCACCCGG 58.959 60.000 0.00 0.00 32.55 5.73
837 857 1.341852 GGGAAGGCGGAGAGATAAGTC 59.658 57.143 0.00 0.00 0.00 3.01
851 1849 1.384191 CAGGTGGGGAAAGGGAAGG 59.616 63.158 0.00 0.00 0.00 3.46
853 1851 3.600919 CCAGGTGGGGAAAGGGAA 58.399 61.111 0.00 0.00 0.00 3.97
883 1881 1.228862 GGCAAGGAGGAAGCCCAAA 60.229 57.895 0.00 0.00 42.58 3.28
916 1915 1.451028 GCATCAGTGGGCCAGTCTC 60.451 63.158 11.93 0.00 0.00 3.36
957 1956 1.000993 GAGGGAGGAGGAGCACTGA 59.999 63.158 0.00 0.00 0.00 3.41
959 1958 2.252898 AGGAGGGAGGAGGAGCACT 61.253 63.158 0.00 0.00 0.00 4.40
960 1959 2.063378 CAGGAGGGAGGAGGAGCAC 61.063 68.421 0.00 0.00 0.00 4.40
962 1961 2.445654 CCAGGAGGGAGGAGGAGC 60.446 72.222 0.00 0.00 40.01 4.70
963 1962 2.445654 GCCAGGAGGGAGGAGGAG 60.446 72.222 0.00 0.00 40.01 3.69
964 1963 2.537714 GAAGCCAGGAGGGAGGAGGA 62.538 65.000 0.00 0.00 40.01 3.71
965 1964 2.041928 AAGCCAGGAGGGAGGAGG 59.958 66.667 0.00 0.00 40.01 4.30
966 1965 1.002792 AGAAGCCAGGAGGGAGGAG 59.997 63.158 0.00 0.00 40.01 3.69
967 1966 1.306482 CAGAAGCCAGGAGGGAGGA 60.306 63.158 0.00 0.00 40.01 3.71
968 1967 3.041469 GCAGAAGCCAGGAGGGAGG 62.041 68.421 0.00 0.00 40.01 4.30
969 1968 0.689080 TAGCAGAAGCCAGGAGGGAG 60.689 60.000 0.00 0.00 43.56 4.30
970 1969 0.978146 GTAGCAGAAGCCAGGAGGGA 60.978 60.000 0.00 0.00 43.56 4.20
971 1970 1.524482 GTAGCAGAAGCCAGGAGGG 59.476 63.158 0.00 0.00 43.56 4.30
972 1971 1.267574 TGGTAGCAGAAGCCAGGAGG 61.268 60.000 0.00 0.00 43.56 4.30
973 1972 0.177604 CTGGTAGCAGAAGCCAGGAG 59.822 60.000 17.08 0.00 44.36 3.69
974 1973 2.290847 CTGGTAGCAGAAGCCAGGA 58.709 57.895 17.08 0.00 44.36 3.86
975 1974 4.950479 CTGGTAGCAGAAGCCAGG 57.050 61.111 17.08 0.00 44.36 4.45
1010 2009 1.550130 TTGGCGGTAGGGTTCAGAGG 61.550 60.000 0.00 0.00 0.00 3.69
1109 2108 1.669211 GGAGTGAGCAACAGACGGTAC 60.669 57.143 0.00 0.00 0.00 3.34
1114 2113 0.389166 CGGAGGAGTGAGCAACAGAC 60.389 60.000 0.00 0.00 0.00 3.51
1397 2427 2.628178 CTGAATCCTGTATCGTGGGCTA 59.372 50.000 0.00 0.00 0.00 3.93
1398 2428 1.414181 CTGAATCCTGTATCGTGGGCT 59.586 52.381 0.00 0.00 0.00 5.19
1400 2430 2.430694 TGTCTGAATCCTGTATCGTGGG 59.569 50.000 0.00 0.00 0.00 4.61
1401 2431 3.801114 TGTCTGAATCCTGTATCGTGG 57.199 47.619 0.00 0.00 0.00 4.94
1402 2432 5.351458 TGAATGTCTGAATCCTGTATCGTG 58.649 41.667 0.00 0.00 0.00 4.35
1403 2433 5.127845 ACTGAATGTCTGAATCCTGTATCGT 59.872 40.000 0.00 0.00 0.00 3.73
1404 2434 5.595885 ACTGAATGTCTGAATCCTGTATCG 58.404 41.667 0.00 0.00 0.00 2.92
1405 2435 7.492524 TGTACTGAATGTCTGAATCCTGTATC 58.507 38.462 0.00 0.00 0.00 2.24
1406 2436 7.423844 TGTACTGAATGTCTGAATCCTGTAT 57.576 36.000 0.00 0.00 0.00 2.29
1407 2437 6.850752 TGTACTGAATGTCTGAATCCTGTA 57.149 37.500 0.00 0.00 0.00 2.74
1408 2438 5.745312 TGTACTGAATGTCTGAATCCTGT 57.255 39.130 0.00 0.00 0.00 4.00
1409 2439 6.111382 ACATGTACTGAATGTCTGAATCCTG 58.889 40.000 0.00 0.00 32.83 3.86
1410 2440 6.305272 ACATGTACTGAATGTCTGAATCCT 57.695 37.500 0.00 0.00 32.83 3.24
1411 2441 6.595772 GACATGTACTGAATGTCTGAATCC 57.404 41.667 14.48 0.00 46.81 3.01
1419 2449 5.221722 ACAGAACCAGACATGTACTGAATGT 60.222 40.000 20.26 15.96 40.93 2.71
1420 2450 5.240891 ACAGAACCAGACATGTACTGAATG 58.759 41.667 20.26 15.55 37.54 2.67
1431 2461 3.639561 TGTAGCAGTTACAGAACCAGACA 59.360 43.478 0.00 0.00 37.35 3.41
1459 2489 2.805099 GGATACATGTAGCTCTGCTTGC 59.195 50.000 19.77 0.00 40.44 4.01
1513 2543 7.936847 TGATAAAATCTAGCACACGGGATAAAT 59.063 33.333 0.00 0.00 0.00 1.40
1533 2570 4.582656 CCAAGGAAACCACACACTGATAAA 59.417 41.667 0.00 0.00 0.00 1.40
1568 2607 3.354678 CGGGGAGCAAAACACCAG 58.645 61.111 0.00 0.00 0.00 4.00
1643 2682 1.538047 TCAGATTCTGCAGCAAACCC 58.462 50.000 9.47 0.00 0.00 4.11
1666 2705 7.769044 GCTTCAGATCCTGTAGTTAATTGGTTA 59.231 37.037 0.00 0.00 32.65 2.85
1761 2804 5.524511 TCGACATTAACGATCCAACAAAG 57.475 39.130 0.00 0.00 34.85 2.77
1798 2842 5.295950 ACTATAGCTCAATTGCACAGCTAG 58.704 41.667 23.70 18.12 46.36 3.42
1835 2879 5.193679 ACTAACCAGAAAAGTATCCCATGC 58.806 41.667 0.00 0.00 0.00 4.06
1864 2908 6.564125 CGGGCTAAAAGTTCATCGCTTATAAG 60.564 42.308 8.20 8.20 0.00 1.73
1980 3159 4.699257 GCAATGAAGTTCAGAGTGGAGATT 59.301 41.667 11.91 0.00 0.00 2.40
2012 3196 6.036577 TGAGTCTGCATACAAGTGATACAA 57.963 37.500 4.92 0.00 0.00 2.41
2013 3197 5.654497 CTGAGTCTGCATACAAGTGATACA 58.346 41.667 4.92 0.00 0.00 2.29
2014 3198 4.505922 GCTGAGTCTGCATACAAGTGATAC 59.494 45.833 16.35 0.00 0.00 2.24
2015 3199 4.160252 TGCTGAGTCTGCATACAAGTGATA 59.840 41.667 19.57 0.00 33.63 2.15
2016 3200 3.055602 TGCTGAGTCTGCATACAAGTGAT 60.056 43.478 19.57 0.00 33.63 3.06
2017 3201 2.299867 TGCTGAGTCTGCATACAAGTGA 59.700 45.455 19.57 0.00 33.63 3.41
2018 3202 2.691927 TGCTGAGTCTGCATACAAGTG 58.308 47.619 19.57 0.00 33.63 3.16
2019 3203 3.268330 CATGCTGAGTCTGCATACAAGT 58.732 45.455 29.97 11.53 44.81 3.16
2020 3204 2.612672 CCATGCTGAGTCTGCATACAAG 59.387 50.000 29.97 19.99 44.81 3.16
2061 3245 0.028770 CGGCAGCGAAAAGTTTGACA 59.971 50.000 0.00 0.00 0.00 3.58
2071 3255 2.261671 GAGAAGGTCGGCAGCGAA 59.738 61.111 0.00 0.00 0.00 4.70
2073 3257 2.811317 GTGAGAAGGTCGGCAGCG 60.811 66.667 0.00 0.00 0.00 5.18
2121 3305 0.814410 TACGGCCACAGCGAACAAAA 60.814 50.000 2.24 0.00 41.24 2.44
2154 3338 3.025322 ACAACAATCCCAACAACCTCA 57.975 42.857 0.00 0.00 0.00 3.86
2199 3383 1.377725 ATCAACCAGGAAGCGCAGG 60.378 57.895 11.47 5.69 0.00 4.85
2338 3522 0.032615 ACCCTCAACAAAGTGCCCAA 60.033 50.000 0.00 0.00 0.00 4.12
2346 3530 0.547075 TCCCACGAACCCTCAACAAA 59.453 50.000 0.00 0.00 0.00 2.83
2347 3531 0.107831 CTCCCACGAACCCTCAACAA 59.892 55.000 0.00 0.00 0.00 2.83
2531 3715 5.762179 ACAGTTTGGGATCATTACAGAGA 57.238 39.130 0.00 0.00 0.00 3.10
2550 3734 4.876107 ACCACAGAAAGAAACACAGTACAG 59.124 41.667 0.00 0.00 0.00 2.74
2556 3740 5.250200 ACAGTAACCACAGAAAGAAACACA 58.750 37.500 0.00 0.00 0.00 3.72
2707 3891 0.833287 GGAGCCTCAGCATTAGACCA 59.167 55.000 0.00 0.00 43.56 4.02
2718 3902 2.311463 GCACTATCACTAGGAGCCTCA 58.689 52.381 0.00 0.00 0.00 3.86
2736 3920 2.241160 ACTTCATCCAAATGCAGTGCA 58.759 42.857 22.22 22.22 37.87 4.57
2737 3921 4.439305 TTACTTCATCCAAATGCAGTGC 57.561 40.909 8.58 8.58 39.33 4.40
2745 3929 6.601613 GGGATACACACATTACTTCATCCAAA 59.398 38.462 0.00 0.00 33.79 3.28
2750 3934 6.156949 AGTCAGGGATACACACATTACTTCAT 59.843 38.462 0.00 0.00 39.74 2.57
2765 3949 4.895889 CAGTACCATTCAGAGTCAGGGATA 59.104 45.833 0.00 0.00 0.00 2.59
2886 4073 7.172361 GGATATATTGACCTCTGAAACAAGAGC 59.828 40.741 0.00 0.00 42.08 4.09
2887 4074 7.383572 CGGATATATTGACCTCTGAAACAAGAG 59.616 40.741 0.00 0.00 42.90 2.85
2922 4109 4.973168 TCATGTCAAGCTGGAAACTAACT 58.027 39.130 0.00 0.00 0.00 2.24
2925 4112 5.620206 TCTTTCATGTCAAGCTGGAAACTA 58.380 37.500 0.00 0.00 0.00 2.24
2937 4124 4.571984 CACCGCTGATATTCTTTCATGTCA 59.428 41.667 0.00 0.00 0.00 3.58
2938 4125 4.811024 TCACCGCTGATATTCTTTCATGTC 59.189 41.667 0.00 0.00 0.00 3.06
3116 4306 5.600484 TCTTTATCTTGGCAAAGAAAACCCA 59.400 36.000 7.83 0.00 45.44 4.51
3165 4355 3.053455 CTCACACTTGAGTTTCGACTCC 58.947 50.000 4.29 0.00 43.95 3.85
3181 4371 1.937191 TACATGTGGCCTCTCTCACA 58.063 50.000 9.11 0.00 46.15 3.58
3191 4381 1.029408 TGATGCCCGTTACATGTGGC 61.029 55.000 16.10 16.10 44.27 5.01
3246 4441 8.352201 TGGTAGAAAAATCACATTTGACTTCAG 58.648 33.333 0.00 0.00 33.38 3.02
3273 4494 9.587772 GTCTTTTCACTATCAGAACTATGCTTA 57.412 33.333 0.00 0.00 0.00 3.09
3380 4601 8.684386 TCACTTCATTAACAAACATCTAACCA 57.316 30.769 0.00 0.00 0.00 3.67
3389 4610 7.681939 TCCACCTATCACTTCATTAACAAAC 57.318 36.000 0.00 0.00 0.00 2.93
3410 4631 7.535626 TTGAAGTCAAAACCTGGACATTTCCA 61.536 38.462 0.00 0.00 40.31 3.53
3453 4674 6.606796 TGCTTTAGATGAATATTCAAGGCCAA 59.393 34.615 21.50 10.25 41.13 4.52
3512 4735 7.789273 TCATTTTAGTTCCTTTTGTGTCGTA 57.211 32.000 0.00 0.00 0.00 3.43
3570 4795 4.384647 GGAAGCCAAGGTAGATTCAGATGT 60.385 45.833 0.00 0.00 0.00 3.06
3610 4892 5.989777 GCTTTAATCATCTCCGCTACCTTTA 59.010 40.000 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.