Multiple sequence alignment - TraesCS3A01G485700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G485700 chr3A 100.000 2471 0 0 1 2471 714595182 714592712 0.000000e+00 4564.0
1 TraesCS3A01G485700 chr3A 91.635 1590 118 6 892 2469 714625241 714626827 0.000000e+00 2185.0
2 TraesCS3A01G485700 chr3A 93.436 716 46 1 925 1639 714603624 714602909 0.000000e+00 1061.0
3 TraesCS3A01G485700 chr3A 93.182 396 23 3 498 891 152285344 152284951 1.650000e-161 579.0
4 TraesCS3A01G485700 chr3A 92.929 396 23 5 498 892 573585769 573586160 2.760000e-159 571.0
5 TraesCS3A01G485700 chr3A 79.714 350 37 18 188 505 714603978 714603631 3.200000e-54 222.0
6 TraesCS3A01G485700 chr3B 92.244 1328 90 5 896 2212 773746145 773744820 0.000000e+00 1869.0
7 TraesCS3A01G485700 chr3B 92.282 609 47 0 892 1500 773762512 773761904 0.000000e+00 865.0
8 TraesCS3A01G485700 chr3B 91.461 609 52 0 892 1500 773897314 773897922 0.000000e+00 837.0
9 TraesCS3A01G485700 chr3B 82.427 239 36 2 188 421 773762847 773762610 1.160000e-48 204.0
10 TraesCS3A01G485700 chr3B 92.199 141 9 1 2325 2465 773744599 773744737 5.390000e-47 198.0
11 TraesCS3A01G485700 chr3D 91.792 1267 92 8 892 2148 579425655 579424391 0.000000e+00 1753.0
12 TraesCS3A01G485700 chr3D 93.115 610 41 1 892 1500 579583886 579584495 0.000000e+00 893.0
13 TraesCS3A01G485700 chr3D 94.551 312 15 2 2162 2471 579397560 579397249 4.780000e-132 481.0
14 TraesCS3A01G485700 chr5A 97.201 393 10 1 498 890 288406287 288405896 0.000000e+00 664.0
15 TraesCS3A01G485700 chr5A 92.768 401 24 4 495 892 203869200 203869598 2.130000e-160 575.0
16 TraesCS3A01G485700 chr5A 92.556 403 24 5 498 898 335307108 335307506 7.670000e-160 573.0
17 TraesCS3A01G485700 chr7A 93.165 395 22 4 501 892 65539653 65539261 2.130000e-160 575.0
18 TraesCS3A01G485700 chr2D 92.965 398 22 5 503 898 335299423 335299030 2.130000e-160 575.0
19 TraesCS3A01G485700 chr4A 92.929 396 22 5 499 892 536728777 536729168 2.760000e-159 571.0
20 TraesCS3A01G485700 chr4A 92.308 91 7 0 892 982 714667771 714667861 1.990000e-26 130.0
21 TraesCS3A01G485700 chr2A 92.519 401 24 5 495 892 574490967 574491364 9.920000e-159 569.0
22 TraesCS3A01G485700 chr4B 90.110 91 9 0 892 982 430672669 430672759 4.320000e-23 119.0
23 TraesCS3A01G485700 chrUn 91.379 58 5 0 925 982 230760125 230760182 2.040000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G485700 chr3A 714592712 714595182 2470 True 4564.0 4564 100.0000 1 2471 1 chr3A.!!$R2 2470
1 TraesCS3A01G485700 chr3A 714625241 714626827 1586 False 2185.0 2185 91.6350 892 2469 1 chr3A.!!$F2 1577
2 TraesCS3A01G485700 chr3A 714602909 714603978 1069 True 641.5 1061 86.5750 188 1639 2 chr3A.!!$R3 1451
3 TraesCS3A01G485700 chr3B 773744820 773746145 1325 True 1869.0 1869 92.2440 896 2212 1 chr3B.!!$R1 1316
4 TraesCS3A01G485700 chr3B 773897314 773897922 608 False 837.0 837 91.4610 892 1500 1 chr3B.!!$F2 608
5 TraesCS3A01G485700 chr3B 773761904 773762847 943 True 534.5 865 87.3545 188 1500 2 chr3B.!!$R2 1312
6 TraesCS3A01G485700 chr3D 579424391 579425655 1264 True 1753.0 1753 91.7920 892 2148 1 chr3D.!!$R2 1256
7 TraesCS3A01G485700 chr3D 579583886 579584495 609 False 893.0 893 93.1150 892 1500 1 chr3D.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.458543 TTCTCGCGGTGATCTGCTTC 60.459 55.0 6.13 0.0 43.19 3.86 F
166 167 0.674895 GCGGTGATCTGCTTCAAGGT 60.675 55.0 0.00 0.0 42.20 3.50 F
1095 1142 0.179032 TGCCTTCCTTTGTTCGCTCA 60.179 50.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1076 1123 0.179032 TGAGCGAACAAAGGAAGGCA 60.179 50.000 0.0 0.0 0.00 4.75 R
1452 1499 1.625818 CCTCAAGCAGAAGGTAGTGGT 59.374 52.381 0.0 0.0 0.00 4.16 R
2077 2128 2.430332 TCTTGGCAAAGAAAACCCTGTG 59.570 45.455 0.0 0.0 39.52 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.705302 TCAGTCTTCTGAAATCTATGCTTGT 58.295 36.000 0.00 0.00 46.17 3.16
42 43 6.815641 TCAGTCTTCTGAAATCTATGCTTGTC 59.184 38.462 0.00 0.00 46.17 3.18
43 44 5.809562 AGTCTTCTGAAATCTATGCTTGTCG 59.190 40.000 0.00 0.00 0.00 4.35
44 45 5.006165 GTCTTCTGAAATCTATGCTTGTCGG 59.994 44.000 0.00 0.00 0.00 4.79
45 46 4.736126 TCTGAAATCTATGCTTGTCGGA 57.264 40.909 0.00 0.00 0.00 4.55
46 47 4.686972 TCTGAAATCTATGCTTGTCGGAG 58.313 43.478 0.00 0.00 0.00 4.63
47 48 4.402474 TCTGAAATCTATGCTTGTCGGAGA 59.598 41.667 0.00 0.00 0.00 3.71
48 49 4.686972 TGAAATCTATGCTTGTCGGAGAG 58.313 43.478 0.00 0.00 36.95 3.20
49 50 4.402474 TGAAATCTATGCTTGTCGGAGAGA 59.598 41.667 0.00 0.00 36.95 3.10
50 51 5.069648 TGAAATCTATGCTTGTCGGAGAGAT 59.930 40.000 0.00 0.00 42.80 2.75
51 52 3.998099 TCTATGCTTGTCGGAGAGATG 57.002 47.619 0.00 0.00 36.95 2.90
52 53 3.291584 TCTATGCTTGTCGGAGAGATGT 58.708 45.455 0.00 0.00 36.95 3.06
53 54 3.701542 TCTATGCTTGTCGGAGAGATGTT 59.298 43.478 0.00 0.00 36.95 2.71
54 55 4.887655 TCTATGCTTGTCGGAGAGATGTTA 59.112 41.667 0.00 0.00 36.95 2.41
55 56 3.953712 TGCTTGTCGGAGAGATGTTAA 57.046 42.857 0.00 0.00 36.95 2.01
56 57 3.849911 TGCTTGTCGGAGAGATGTTAAG 58.150 45.455 0.00 0.00 36.95 1.85
57 58 3.258372 TGCTTGTCGGAGAGATGTTAAGT 59.742 43.478 0.00 0.00 36.95 2.24
58 59 3.614616 GCTTGTCGGAGAGATGTTAAGTG 59.385 47.826 0.00 0.00 36.95 3.16
59 60 4.810790 CTTGTCGGAGAGATGTTAAGTGT 58.189 43.478 0.00 0.00 36.95 3.55
60 61 5.621555 GCTTGTCGGAGAGATGTTAAGTGTA 60.622 44.000 0.00 0.00 36.95 2.90
61 62 6.525578 TTGTCGGAGAGATGTTAAGTGTAT 57.474 37.500 0.00 0.00 36.95 2.29
62 63 5.891451 TGTCGGAGAGATGTTAAGTGTATG 58.109 41.667 0.00 0.00 36.95 2.39
63 64 4.740695 GTCGGAGAGATGTTAAGTGTATGC 59.259 45.833 0.00 0.00 36.95 3.14
64 65 3.731216 CGGAGAGATGTTAAGTGTATGCG 59.269 47.826 0.00 0.00 0.00 4.73
65 66 3.491267 GGAGAGATGTTAAGTGTATGCGC 59.509 47.826 0.00 0.00 0.00 6.09
66 67 4.363999 GAGAGATGTTAAGTGTATGCGCT 58.636 43.478 9.73 0.00 36.97 5.92
67 68 4.115516 AGAGATGTTAAGTGTATGCGCTG 58.884 43.478 9.73 0.00 35.34 5.18
68 69 4.112634 GAGATGTTAAGTGTATGCGCTGA 58.887 43.478 9.73 0.00 35.34 4.26
69 70 4.697514 AGATGTTAAGTGTATGCGCTGAT 58.302 39.130 9.73 0.00 35.34 2.90
70 71 5.118990 AGATGTTAAGTGTATGCGCTGATT 58.881 37.500 9.73 0.00 35.34 2.57
71 72 4.857871 TGTTAAGTGTATGCGCTGATTC 57.142 40.909 9.73 0.00 35.34 2.52
72 73 4.249661 TGTTAAGTGTATGCGCTGATTCA 58.750 39.130 9.73 0.00 35.34 2.57
73 74 4.693095 TGTTAAGTGTATGCGCTGATTCAA 59.307 37.500 9.73 0.00 35.34 2.69
74 75 5.353956 TGTTAAGTGTATGCGCTGATTCAAT 59.646 36.000 9.73 0.00 35.34 2.57
75 76 3.957671 AGTGTATGCGCTGATTCAATG 57.042 42.857 9.73 0.00 33.62 2.82
76 77 3.273434 AGTGTATGCGCTGATTCAATGT 58.727 40.909 9.73 0.00 33.62 2.71
77 78 3.691118 AGTGTATGCGCTGATTCAATGTT 59.309 39.130 9.73 0.00 33.62 2.71
78 79 3.787634 GTGTATGCGCTGATTCAATGTTG 59.212 43.478 9.73 0.00 0.00 3.33
79 80 3.439825 TGTATGCGCTGATTCAATGTTGT 59.560 39.130 9.73 0.00 0.00 3.32
80 81 4.633565 TGTATGCGCTGATTCAATGTTGTA 59.366 37.500 9.73 0.00 0.00 2.41
81 82 3.469899 TGCGCTGATTCAATGTTGTAC 57.530 42.857 9.73 0.00 0.00 2.90
82 83 3.073678 TGCGCTGATTCAATGTTGTACT 58.926 40.909 9.73 0.00 0.00 2.73
83 84 3.120234 TGCGCTGATTCAATGTTGTACTG 60.120 43.478 9.73 0.00 0.00 2.74
84 85 3.120199 GCGCTGATTCAATGTTGTACTGT 60.120 43.478 0.00 0.00 0.00 3.55
85 86 4.613622 GCGCTGATTCAATGTTGTACTGTT 60.614 41.667 0.00 0.00 0.00 3.16
86 87 5.390461 GCGCTGATTCAATGTTGTACTGTTA 60.390 40.000 0.00 0.00 0.00 2.41
87 88 6.243551 CGCTGATTCAATGTTGTACTGTTAG 58.756 40.000 0.00 0.00 0.00 2.34
88 89 6.090763 CGCTGATTCAATGTTGTACTGTTAGA 59.909 38.462 0.00 0.00 0.00 2.10
89 90 7.237173 GCTGATTCAATGTTGTACTGTTAGAC 58.763 38.462 0.00 0.00 0.00 2.59
90 91 7.118390 GCTGATTCAATGTTGTACTGTTAGACT 59.882 37.037 0.00 0.00 0.00 3.24
91 92 9.639601 CTGATTCAATGTTGTACTGTTAGACTA 57.360 33.333 0.00 0.00 0.00 2.59
92 93 9.639601 TGATTCAATGTTGTACTGTTAGACTAG 57.360 33.333 0.00 0.00 0.00 2.57
93 94 7.884816 TTCAATGTTGTACTGTTAGACTAGC 57.115 36.000 0.00 0.00 0.00 3.42
94 95 7.228314 TCAATGTTGTACTGTTAGACTAGCT 57.772 36.000 0.00 0.00 0.00 3.32
95 96 7.667557 TCAATGTTGTACTGTTAGACTAGCTT 58.332 34.615 0.00 0.00 0.00 3.74
96 97 7.598869 TCAATGTTGTACTGTTAGACTAGCTTG 59.401 37.037 0.00 0.00 0.00 4.01
97 98 6.401047 TGTTGTACTGTTAGACTAGCTTGT 57.599 37.500 0.00 0.00 0.00 3.16
98 99 6.213677 TGTTGTACTGTTAGACTAGCTTGTG 58.786 40.000 5.27 0.00 0.00 3.33
99 100 5.386958 TGTACTGTTAGACTAGCTTGTGG 57.613 43.478 5.27 0.00 0.00 4.17
100 101 3.320673 ACTGTTAGACTAGCTTGTGGC 57.679 47.619 5.27 0.00 42.19 5.01
101 102 2.028020 ACTGTTAGACTAGCTTGTGGCC 60.028 50.000 5.27 0.00 43.05 5.36
102 103 2.234908 CTGTTAGACTAGCTTGTGGCCT 59.765 50.000 5.27 0.00 43.05 5.19
103 104 2.637872 TGTTAGACTAGCTTGTGGCCTT 59.362 45.455 5.27 0.00 43.05 4.35
104 105 3.263261 GTTAGACTAGCTTGTGGCCTTC 58.737 50.000 5.27 0.00 43.05 3.46
105 106 1.352083 AGACTAGCTTGTGGCCTTCA 58.648 50.000 5.27 0.00 43.05 3.02
106 107 1.277557 AGACTAGCTTGTGGCCTTCAG 59.722 52.381 5.27 0.00 43.05 3.02
107 108 1.002544 GACTAGCTTGTGGCCTTCAGT 59.997 52.381 5.27 0.00 43.05 3.41
108 109 1.421646 ACTAGCTTGTGGCCTTCAGTT 59.578 47.619 3.32 0.00 43.05 3.16
109 110 2.637872 ACTAGCTTGTGGCCTTCAGTTA 59.362 45.455 3.32 0.00 43.05 2.24
110 111 2.191128 AGCTTGTGGCCTTCAGTTAG 57.809 50.000 3.32 0.00 43.05 2.34
111 112 1.699634 AGCTTGTGGCCTTCAGTTAGA 59.300 47.619 3.32 0.00 43.05 2.10
112 113 2.307098 AGCTTGTGGCCTTCAGTTAGAT 59.693 45.455 3.32 0.00 43.05 1.98
113 114 3.084786 GCTTGTGGCCTTCAGTTAGATT 58.915 45.455 3.32 0.00 34.27 2.40
114 115 4.019321 AGCTTGTGGCCTTCAGTTAGATTA 60.019 41.667 3.32 0.00 43.05 1.75
115 116 4.333926 GCTTGTGGCCTTCAGTTAGATTAG 59.666 45.833 3.32 0.00 34.27 1.73
116 117 3.873910 TGTGGCCTTCAGTTAGATTAGC 58.126 45.455 3.32 0.00 0.00 3.09
117 118 3.206964 GTGGCCTTCAGTTAGATTAGCC 58.793 50.000 3.32 0.00 36.86 3.93
118 119 3.115390 TGGCCTTCAGTTAGATTAGCCT 58.885 45.455 3.32 0.00 37.11 4.58
119 120 3.118261 TGGCCTTCAGTTAGATTAGCCTG 60.118 47.826 3.32 0.00 37.11 4.85
120 121 2.875317 GCCTTCAGTTAGATTAGCCTGC 59.125 50.000 0.00 0.00 0.00 4.85
121 122 3.682718 GCCTTCAGTTAGATTAGCCTGCA 60.683 47.826 0.00 0.00 0.00 4.41
122 123 4.125703 CCTTCAGTTAGATTAGCCTGCAG 58.874 47.826 6.78 6.78 0.00 4.41
123 124 3.185246 TCAGTTAGATTAGCCTGCAGC 57.815 47.619 8.66 3.91 44.25 5.25
132 133 3.494336 GCCTGCAGCTGCTACACG 61.494 66.667 36.61 20.32 42.66 4.49
133 134 3.494336 CCTGCAGCTGCTACACGC 61.494 66.667 36.61 11.71 42.66 5.34
155 156 3.698382 CTGCTTCTCGCGGTGATC 58.302 61.111 6.13 1.54 43.27 2.92
156 157 1.140589 CTGCTTCTCGCGGTGATCT 59.859 57.895 6.13 0.00 43.27 2.75
157 158 1.144565 CTGCTTCTCGCGGTGATCTG 61.145 60.000 6.13 0.75 43.27 2.90
158 159 2.520904 GCTTCTCGCGGTGATCTGC 61.521 63.158 6.13 6.82 42.06 4.26
159 160 1.140589 CTTCTCGCGGTGATCTGCT 59.859 57.895 6.13 0.00 43.19 4.24
160 161 0.459237 CTTCTCGCGGTGATCTGCTT 60.459 55.000 6.13 0.00 43.19 3.91
161 162 0.458543 TTCTCGCGGTGATCTGCTTC 60.459 55.000 6.13 0.00 43.19 3.86
162 163 1.153765 CTCGCGGTGATCTGCTTCA 60.154 57.895 6.13 0.00 43.19 3.02
163 164 0.737367 CTCGCGGTGATCTGCTTCAA 60.737 55.000 6.13 0.00 43.19 2.69
164 165 0.737367 TCGCGGTGATCTGCTTCAAG 60.737 55.000 6.13 0.00 43.19 3.02
165 166 1.699656 CGCGGTGATCTGCTTCAAGG 61.700 60.000 0.00 0.00 43.19 3.61
166 167 0.674895 GCGGTGATCTGCTTCAAGGT 60.675 55.000 0.00 0.00 42.20 3.50
167 168 1.081892 CGGTGATCTGCTTCAAGGTG 58.918 55.000 0.00 0.00 0.00 4.00
168 169 1.338105 CGGTGATCTGCTTCAAGGTGA 60.338 52.381 0.00 0.00 0.00 4.02
169 170 2.783135 GGTGATCTGCTTCAAGGTGAA 58.217 47.619 0.00 0.00 34.79 3.18
170 171 3.350833 GGTGATCTGCTTCAAGGTGAAT 58.649 45.455 0.00 0.00 35.59 2.57
171 172 3.128242 GGTGATCTGCTTCAAGGTGAATG 59.872 47.826 0.00 0.00 35.59 2.67
172 173 3.755378 GTGATCTGCTTCAAGGTGAATGT 59.245 43.478 0.00 0.00 35.59 2.71
173 174 4.217118 GTGATCTGCTTCAAGGTGAATGTT 59.783 41.667 0.00 0.00 35.59 2.71
174 175 4.216902 TGATCTGCTTCAAGGTGAATGTTG 59.783 41.667 0.00 0.00 35.59 3.33
175 176 3.554934 TCTGCTTCAAGGTGAATGTTGT 58.445 40.909 0.00 0.00 35.59 3.32
176 177 4.713553 TCTGCTTCAAGGTGAATGTTGTA 58.286 39.130 0.00 0.00 35.59 2.41
177 178 4.515191 TCTGCTTCAAGGTGAATGTTGTAC 59.485 41.667 0.00 0.00 35.59 2.90
178 179 4.460263 TGCTTCAAGGTGAATGTTGTACT 58.540 39.130 0.00 0.00 35.59 2.73
179 180 4.275689 TGCTTCAAGGTGAATGTTGTACTG 59.724 41.667 0.00 0.00 35.59 2.74
180 181 4.515191 GCTTCAAGGTGAATGTTGTACTGA 59.485 41.667 0.00 0.00 35.59 3.41
181 182 5.182001 GCTTCAAGGTGAATGTTGTACTGAT 59.818 40.000 0.00 0.00 35.59 2.90
182 183 6.294176 GCTTCAAGGTGAATGTTGTACTGATT 60.294 38.462 0.00 0.00 35.59 2.57
183 184 6.801539 TCAAGGTGAATGTTGTACTGATTC 57.198 37.500 0.00 0.25 0.00 2.52
184 185 6.295249 TCAAGGTGAATGTTGTACTGATTCA 58.705 36.000 9.39 9.39 34.47 2.57
185 186 6.770303 TCAAGGTGAATGTTGTACTGATTCAA 59.230 34.615 13.11 0.62 37.73 2.69
186 187 7.448161 TCAAGGTGAATGTTGTACTGATTCAAT 59.552 33.333 13.11 6.08 37.73 2.57
201 202 3.061848 AATGTTTGCTCCCCGCGG 61.062 61.111 21.04 21.04 43.27 6.46
218 219 1.880340 GGTGATCTGCTTCTCGCGG 60.880 63.158 6.13 0.00 46.72 6.46
243 254 3.386237 GGAGACAGGAGCACCGCT 61.386 66.667 0.00 0.00 43.88 5.52
246 257 2.031163 GACAGGAGCACCGCTGTT 59.969 61.111 0.00 0.00 39.88 3.16
259 270 0.931662 CGCTGTTGTTTGCTGCAGAC 60.932 55.000 20.43 15.64 0.00 3.51
265 276 1.875009 TGTTTGCTGCAGACTCTGAG 58.125 50.000 20.43 2.45 32.44 3.35
297 308 8.454106 CCAATTAACTACAGAATCTGAAACCTG 58.546 37.037 18.20 3.81 35.18 4.00
305 316 4.214971 CAGAATCTGAAACCTGGTGTTCAG 59.785 45.833 27.61 27.61 35.67 3.02
313 324 0.683973 CCTGGTGTTCAGCTCAGTCT 59.316 55.000 3.76 0.00 42.05 3.24
317 328 1.070758 GGTGTTCAGCTCAGTCTGGAA 59.929 52.381 0.00 0.00 34.91 3.53
321 332 3.817084 TGTTCAGCTCAGTCTGGAAAATG 59.183 43.478 0.00 0.00 34.91 2.32
323 334 4.890158 TCAGCTCAGTCTGGAAAATGTA 57.110 40.909 0.00 0.00 34.91 2.29
324 335 4.825422 TCAGCTCAGTCTGGAAAATGTAG 58.175 43.478 0.00 0.00 34.91 2.74
356 368 8.458573 ACTATTATTTGTAATTTCGGCCATGA 57.541 30.769 2.24 0.00 0.00 3.07
362 374 5.957842 TGTAATTTCGGCCATGATTATCC 57.042 39.130 2.24 0.00 0.00 2.59
368 380 5.867903 TTCGGCCATGATTATCCATTTTT 57.132 34.783 2.24 0.00 0.00 1.94
394 406 8.575565 TTGGATCGTTAAATCTCGATTTCTAG 57.424 34.615 8.07 2.48 44.90 2.43
418 430 4.191544 TCTACCATAGCTGTGCAATTGAC 58.808 43.478 10.34 5.41 0.00 3.18
421 433 2.357009 CCATAGCTGTGCAATTGACCTC 59.643 50.000 10.34 0.00 0.00 3.85
423 435 2.283145 AGCTGTGCAATTGACCTCTT 57.717 45.000 10.34 0.00 0.00 2.85
425 437 1.881973 GCTGTGCAATTGACCTCTTGA 59.118 47.619 10.34 0.00 0.00 3.02
430 461 6.038603 GCTGTGCAATTGACCTCTTGATATAA 59.961 38.462 10.34 0.00 0.00 0.98
441 472 9.753674 TGACCTCTTGATATAATTTTCTGGTTT 57.246 29.630 0.00 0.00 0.00 3.27
461 492 7.079475 TGGTTTGTTATAAGCGCTAAACTTTC 58.921 34.615 23.23 12.37 0.00 2.62
464 495 7.429636 TTGTTATAAGCGCTAAACTTTCAGT 57.570 32.000 22.82 4.36 0.00 3.41
466 497 6.091713 TGTTATAAGCGCTAAACTTTCAGTCC 59.908 38.462 22.82 3.13 0.00 3.85
510 542 9.326413 GCTCCGCCAATTTTATATATATAGTGT 57.674 33.333 2.76 0.00 0.00 3.55
528 560 5.359194 AGTGTTACTATTCATCACCCAGG 57.641 43.478 0.00 0.00 0.00 4.45
529 561 4.164221 AGTGTTACTATTCATCACCCAGGG 59.836 45.833 2.85 2.85 0.00 4.45
530 562 4.080526 GTGTTACTATTCATCACCCAGGGT 60.081 45.833 4.76 4.76 35.62 4.34
531 563 5.129815 GTGTTACTATTCATCACCCAGGGTA 59.870 44.000 12.21 0.00 32.11 3.69
532 564 5.908831 TGTTACTATTCATCACCCAGGGTAT 59.091 40.000 12.21 3.05 32.11 2.73
533 565 7.015877 GTGTTACTATTCATCACCCAGGGTATA 59.984 40.741 12.21 4.23 32.11 1.47
534 566 7.234782 TGTTACTATTCATCACCCAGGGTATAG 59.765 40.741 12.21 16.42 32.11 1.31
535 567 5.977533 ACTATTCATCACCCAGGGTATAGA 58.022 41.667 24.19 14.24 32.11 1.98
536 568 6.390504 ACTATTCATCACCCAGGGTATAGAA 58.609 40.000 24.19 20.62 32.11 2.10
537 569 7.025620 ACTATTCATCACCCAGGGTATAGAAT 58.974 38.462 24.19 24.28 32.11 2.40
538 570 8.184249 ACTATTCATCACCCAGGGTATAGAATA 58.816 37.037 24.19 24.15 32.11 1.75
539 571 7.888514 ATTCATCACCCAGGGTATAGAATAA 57.111 36.000 21.67 11.32 32.11 1.40
540 572 6.935240 TCATCACCCAGGGTATAGAATAAG 57.065 41.667 12.21 0.00 32.11 1.73
541 573 6.390504 TCATCACCCAGGGTATAGAATAAGT 58.609 40.000 12.21 0.00 32.11 2.24
542 574 6.849697 TCATCACCCAGGGTATAGAATAAGTT 59.150 38.462 12.21 0.00 32.11 2.66
543 575 8.014263 TCATCACCCAGGGTATAGAATAAGTTA 58.986 37.037 12.21 0.00 32.11 2.24
544 576 8.826765 CATCACCCAGGGTATAGAATAAGTTAT 58.173 37.037 12.21 0.00 32.11 1.89
545 577 8.808240 TCACCCAGGGTATAGAATAAGTTATT 57.192 34.615 12.21 7.87 32.11 1.40
546 578 8.877195 TCACCCAGGGTATAGAATAAGTTATTC 58.123 37.037 22.80 22.80 38.59 1.75
547 579 8.881262 CACCCAGGGTATAGAATAAGTTATTCT 58.119 37.037 31.10 31.10 44.75 2.40
548 580 9.461734 ACCCAGGGTATAGAATAAGTTATTCTT 57.538 33.333 32.68 23.95 42.36 2.52
557 589 6.846325 GAATAAGTTATTCTTCACCCGAGG 57.154 41.667 22.93 0.00 41.00 4.63
558 590 5.952347 ATAAGTTATTCTTCACCCGAGGT 57.048 39.130 0.00 0.00 37.56 3.85
559 591 7.427989 AATAAGTTATTCTTCACCCGAGGTA 57.572 36.000 2.10 0.00 37.56 3.08
560 592 5.340439 AAGTTATTCTTCACCCGAGGTAG 57.660 43.478 0.00 0.00 32.11 3.18
561 593 4.351127 AGTTATTCTTCACCCGAGGTAGT 58.649 43.478 0.00 0.00 32.11 2.73
562 594 4.401837 AGTTATTCTTCACCCGAGGTAGTC 59.598 45.833 0.00 0.00 32.11 2.59
563 595 2.599408 TTCTTCACCCGAGGTAGTCT 57.401 50.000 0.00 0.00 32.11 3.24
564 596 2.599408 TCTTCACCCGAGGTAGTCTT 57.401 50.000 0.00 0.00 32.11 3.01
565 597 3.726557 TCTTCACCCGAGGTAGTCTTA 57.273 47.619 0.00 0.00 32.11 2.10
566 598 3.350833 TCTTCACCCGAGGTAGTCTTAC 58.649 50.000 0.00 0.00 32.11 2.34
567 599 1.742761 TCACCCGAGGTAGTCTTACG 58.257 55.000 0.00 0.00 32.11 3.18
568 600 1.278985 TCACCCGAGGTAGTCTTACGA 59.721 52.381 0.00 0.00 32.11 3.43
569 601 2.092753 TCACCCGAGGTAGTCTTACGAT 60.093 50.000 0.00 0.00 32.11 3.73
570 602 2.290093 CACCCGAGGTAGTCTTACGATC 59.710 54.545 0.00 0.00 32.11 3.69
571 603 1.530293 CCCGAGGTAGTCTTACGATCG 59.470 57.143 14.88 14.88 38.42 3.69
572 604 1.070041 CCGAGGTAGTCTTACGATCGC 60.070 57.143 16.60 0.00 37.87 4.58
573 605 1.865970 CGAGGTAGTCTTACGATCGCT 59.134 52.381 16.60 6.21 34.84 4.93
574 606 2.287373 CGAGGTAGTCTTACGATCGCTT 59.713 50.000 16.60 0.00 34.84 4.68
575 607 3.604314 CGAGGTAGTCTTACGATCGCTTC 60.604 52.174 16.60 1.39 34.84 3.86
576 608 2.617774 AGGTAGTCTTACGATCGCTTCC 59.382 50.000 16.60 10.78 0.00 3.46
577 609 2.617774 GGTAGTCTTACGATCGCTTCCT 59.382 50.000 16.60 7.53 0.00 3.36
578 610 3.812053 GGTAGTCTTACGATCGCTTCCTA 59.188 47.826 16.60 6.53 0.00 2.94
579 611 4.274459 GGTAGTCTTACGATCGCTTCCTAA 59.726 45.833 16.60 4.99 0.00 2.69
580 612 4.978083 AGTCTTACGATCGCTTCCTAAA 57.022 40.909 16.60 0.00 0.00 1.85
581 613 5.517322 AGTCTTACGATCGCTTCCTAAAT 57.483 39.130 16.60 0.00 0.00 1.40
582 614 6.630444 AGTCTTACGATCGCTTCCTAAATA 57.370 37.500 16.60 0.00 0.00 1.40
583 615 7.035840 AGTCTTACGATCGCTTCCTAAATAA 57.964 36.000 16.60 2.01 0.00 1.40
584 616 7.486647 AGTCTTACGATCGCTTCCTAAATAAA 58.513 34.615 16.60 0.00 0.00 1.40
585 617 8.142551 AGTCTTACGATCGCTTCCTAAATAAAT 58.857 33.333 16.60 0.00 0.00 1.40
586 618 8.762426 GTCTTACGATCGCTTCCTAAATAAATT 58.238 33.333 16.60 0.00 0.00 1.82
587 619 9.970395 TCTTACGATCGCTTCCTAAATAAATTA 57.030 29.630 16.60 0.00 0.00 1.40
589 621 7.101993 ACGATCGCTTCCTAAATAAATTACG 57.898 36.000 16.60 0.00 0.00 3.18
590 622 6.698766 ACGATCGCTTCCTAAATAAATTACGT 59.301 34.615 16.60 0.00 0.00 3.57
591 623 7.223387 ACGATCGCTTCCTAAATAAATTACGTT 59.777 33.333 16.60 0.00 0.00 3.99
592 624 8.060090 CGATCGCTTCCTAAATAAATTACGTTT 58.940 33.333 0.26 0.00 0.00 3.60
595 627 9.585099 TCGCTTCCTAAATAAATTACGTTTAGA 57.415 29.630 14.12 3.82 37.53 2.10
685 717 9.533831 AGGTTATAAGACCAGAAAAATCACATT 57.466 29.630 0.00 0.00 42.35 2.71
768 800 7.599630 TTTTTACGGCGAGTACATATTTTCT 57.400 32.000 16.62 0.00 34.56 2.52
769 801 7.599630 TTTTACGGCGAGTACATATTTTCTT 57.400 32.000 16.62 0.00 34.56 2.52
770 802 8.700722 TTTTACGGCGAGTACATATTTTCTTA 57.299 30.769 16.62 0.00 34.56 2.10
771 803 7.684062 TTACGGCGAGTACATATTTTCTTAC 57.316 36.000 16.62 0.00 34.56 2.34
772 804 5.653507 ACGGCGAGTACATATTTTCTTACA 58.346 37.500 16.62 0.00 0.00 2.41
773 805 6.278363 ACGGCGAGTACATATTTTCTTACAT 58.722 36.000 16.62 0.00 0.00 2.29
774 806 6.759827 ACGGCGAGTACATATTTTCTTACATT 59.240 34.615 16.62 0.00 0.00 2.71
775 807 7.042925 ACGGCGAGTACATATTTTCTTACATTC 60.043 37.037 16.62 0.00 0.00 2.67
776 808 7.169308 CGGCGAGTACATATTTTCTTACATTCT 59.831 37.037 0.00 0.00 0.00 2.40
777 809 8.488764 GGCGAGTACATATTTTCTTACATTCTC 58.511 37.037 0.00 0.00 0.00 2.87
778 810 9.250624 GCGAGTACATATTTTCTTACATTCTCT 57.749 33.333 0.00 0.00 0.00 3.10
811 843 8.716619 TGAAATAAGACCAAATTTACGAAACG 57.283 30.769 0.00 0.00 0.00 3.60
812 844 8.344098 TGAAATAAGACCAAATTTACGAAACGT 58.656 29.630 1.91 1.91 44.35 3.99
813 845 9.810231 GAAATAAGACCAAATTTACGAAACGTA 57.190 29.630 0.00 0.00 41.54 3.57
825 857 3.797909 ACGAAACGTAAAAATACGGTGC 58.202 40.909 12.37 4.03 43.24 5.01
827 859 3.797909 GAAACGTAAAAATACGGTGCGT 58.202 40.909 12.37 0.00 43.24 5.24
828 860 3.876242 AACGTAAAAATACGGTGCGTT 57.124 38.095 12.37 0.00 46.68 4.84
829 861 3.172000 ACGTAAAAATACGGTGCGTTG 57.828 42.857 12.37 0.00 46.68 4.10
830 862 2.799412 ACGTAAAAATACGGTGCGTTGA 59.201 40.909 12.37 0.00 46.68 3.18
831 863 3.432933 ACGTAAAAATACGGTGCGTTGAT 59.567 39.130 12.37 0.00 46.68 2.57
832 864 4.624882 ACGTAAAAATACGGTGCGTTGATA 59.375 37.500 12.37 0.00 46.68 2.15
833 865 5.291614 ACGTAAAAATACGGTGCGTTGATAT 59.708 36.000 12.37 0.00 46.68 1.63
834 866 6.475076 ACGTAAAAATACGGTGCGTTGATATA 59.525 34.615 12.37 0.00 46.68 0.86
835 867 7.009999 ACGTAAAAATACGGTGCGTTGATATAA 59.990 33.333 12.37 0.00 46.68 0.98
836 868 7.845137 CGTAAAAATACGGTGCGTTGATATAAA 59.155 33.333 0.64 0.00 41.54 1.40
837 869 9.488124 GTAAAAATACGGTGCGTTGATATAAAA 57.512 29.630 0.00 0.00 41.54 1.52
838 870 8.967552 AAAAATACGGTGCGTTGATATAAAAA 57.032 26.923 0.00 0.00 41.54 1.94
839 871 9.575783 AAAAATACGGTGCGTTGATATAAAAAT 57.424 25.926 0.00 0.00 41.54 1.82
841 873 9.872757 AAATACGGTGCGTTGATATAAAAATAG 57.127 29.630 0.00 0.00 41.54 1.73
842 874 8.821147 ATACGGTGCGTTGATATAAAAATAGA 57.179 30.769 0.00 0.00 41.54 1.98
843 875 7.173863 ACGGTGCGTTGATATAAAAATAGAG 57.826 36.000 0.00 0.00 36.35 2.43
844 876 6.982141 ACGGTGCGTTGATATAAAAATAGAGA 59.018 34.615 0.00 0.00 36.35 3.10
845 877 7.169308 ACGGTGCGTTGATATAAAAATAGAGAG 59.831 37.037 0.00 0.00 36.35 3.20
846 878 7.359264 CGGTGCGTTGATATAAAAATAGAGAGG 60.359 40.741 0.00 0.00 0.00 3.69
847 879 7.095187 GGTGCGTTGATATAAAAATAGAGAGGG 60.095 40.741 0.00 0.00 0.00 4.30
848 880 6.934645 TGCGTTGATATAAAAATAGAGAGGGG 59.065 38.462 0.00 0.00 0.00 4.79
849 881 6.371825 GCGTTGATATAAAAATAGAGAGGGGG 59.628 42.308 0.00 0.00 0.00 5.40
850 882 7.450903 CGTTGATATAAAAATAGAGAGGGGGT 58.549 38.462 0.00 0.00 0.00 4.95
851 883 7.387948 CGTTGATATAAAAATAGAGAGGGGGTG 59.612 40.741 0.00 0.00 0.00 4.61
852 884 8.437575 GTTGATATAAAAATAGAGAGGGGGTGA 58.562 37.037 0.00 0.00 0.00 4.02
853 885 8.575736 TGATATAAAAATAGAGAGGGGGTGAA 57.424 34.615 0.00 0.00 0.00 3.18
854 886 8.660435 TGATATAAAAATAGAGAGGGGGTGAAG 58.340 37.037 0.00 0.00 0.00 3.02
855 887 8.814448 ATATAAAAATAGAGAGGGGGTGAAGA 57.186 34.615 0.00 0.00 0.00 2.87
856 888 5.860648 AAAAATAGAGAGGGGGTGAAGAA 57.139 39.130 0.00 0.00 0.00 2.52
857 889 6.408770 AAAAATAGAGAGGGGGTGAAGAAT 57.591 37.500 0.00 0.00 0.00 2.40
858 890 7.525158 AAAAATAGAGAGGGGGTGAAGAATA 57.475 36.000 0.00 0.00 0.00 1.75
859 891 7.525158 AAAATAGAGAGGGGGTGAAGAATAA 57.475 36.000 0.00 0.00 0.00 1.40
860 892 6.502074 AATAGAGAGGGGGTGAAGAATAAC 57.498 41.667 0.00 0.00 0.00 1.89
861 893 4.081695 AGAGAGGGGGTGAAGAATAACT 57.918 45.455 0.00 0.00 0.00 2.24
862 894 5.222278 AGAGAGGGGGTGAAGAATAACTA 57.778 43.478 0.00 0.00 0.00 2.24
863 895 5.793967 AGAGAGGGGGTGAAGAATAACTAT 58.206 41.667 0.00 0.00 0.00 2.12
864 896 6.213525 AGAGAGGGGGTGAAGAATAACTATT 58.786 40.000 0.00 0.00 0.00 1.73
865 897 6.327887 AGAGAGGGGGTGAAGAATAACTATTC 59.672 42.308 1.83 1.83 41.78 1.75
866 898 5.369993 AGAGGGGGTGAAGAATAACTATTCC 59.630 44.000 5.95 0.00 42.29 3.01
867 899 5.297799 AGGGGGTGAAGAATAACTATTCCT 58.702 41.667 5.95 0.00 42.29 3.36
868 900 5.369993 AGGGGGTGAAGAATAACTATTCCTC 59.630 44.000 5.95 4.07 42.29 3.71
869 901 5.132144 GGGGGTGAAGAATAACTATTCCTCA 59.868 44.000 6.65 6.65 42.29 3.86
873 905 6.884472 TGAAGAATAACTATTCCTCACCCA 57.116 37.500 6.65 0.00 42.29 4.51
874 906 6.889198 TGAAGAATAACTATTCCTCACCCAG 58.111 40.000 6.65 0.00 42.29 4.45
875 907 5.896073 AGAATAACTATTCCTCACCCAGG 57.104 43.478 5.95 0.00 42.29 4.45
876 908 4.660771 AGAATAACTATTCCTCACCCAGGG 59.339 45.833 2.85 2.85 43.67 4.45
877 909 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34
878 910 5.687706 GAATAACTATTCCTCACCCAGGGTG 60.688 48.000 31.06 31.06 43.50 4.61
879 911 7.827072 GAATAACTATTCCTCACCCAGGGTGA 61.827 46.154 35.32 35.32 45.54 4.02
880 912 9.736671 GAATAACTATTCCTCACCCAGGGTGAC 62.737 48.148 34.62 17.53 44.45 3.67
887 919 1.905512 ACCCAGGGTGACGAATAGC 59.094 57.895 11.70 0.00 32.98 2.97
888 920 1.956629 ACCCAGGGTGACGAATAGCG 61.957 60.000 11.70 0.00 39.57 4.26
889 921 1.883084 CCAGGGTGACGAATAGCGC 60.883 63.158 0.00 0.00 46.04 5.92
890 922 2.104331 AGGGTGACGAATAGCGCG 59.896 61.111 0.00 0.00 46.04 6.86
928 961 8.984891 TTTGCTTAACTTTTCATCATGTATGG 57.015 30.769 0.00 0.00 36.15 2.74
932 965 9.503427 GCTTAACTTTTCATCATGTATGGTAAC 57.497 33.333 0.00 0.00 36.15 2.50
982 1020 3.087031 CTGAACTTCATTGCCTCATGGT 58.913 45.455 0.00 0.00 35.27 3.55
1076 1123 3.138625 CCCCCGACATACATCGCT 58.861 61.111 0.00 0.00 40.87 4.93
1094 1141 0.519077 CTGCCTTCCTTTGTTCGCTC 59.481 55.000 0.00 0.00 0.00 5.03
1095 1142 0.179032 TGCCTTCCTTTGTTCGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
1245 1292 4.685169 ATACCTGAATGCAAACAGTTCG 57.315 40.909 17.81 8.76 32.93 3.95
1264 1311 3.284617 TCGTCCGATTCTGATCCAACTA 58.715 45.455 0.00 0.00 0.00 2.24
1347 1394 1.014352 GGATTGTCATGTACCGTGGC 58.986 55.000 0.00 0.00 0.00 5.01
1374 1421 3.279434 TCAGATTGCTGCTAGAGACGTA 58.721 45.455 0.00 0.00 42.01 3.57
1396 1443 8.576317 ACGTAGTTCTAGAGGAGGACCCTAATA 61.576 44.444 0.00 0.00 42.98 0.98
1404 1451 3.174779 GGAGGACCCTAATATGGAGGTC 58.825 54.545 8.98 8.98 46.65 3.85
1437 1484 2.230992 GCAGTGTATTCACATGGCCAAA 59.769 45.455 10.96 0.00 46.01 3.28
1452 1499 7.980662 CACATGGCCAAAGAATGTTATGATTTA 59.019 33.333 10.96 0.00 32.27 1.40
1569 1617 4.322801 CCAACTTCTTCTAACCGATCCAGT 60.323 45.833 0.00 0.00 0.00 4.00
1572 1620 4.082136 ACTTCTTCTAACCGATCCAGTGTC 60.082 45.833 0.00 0.00 0.00 3.67
1579 1627 1.092348 CCGATCCAGTGTCTGTACGA 58.908 55.000 0.00 0.00 0.00 3.43
1602 1650 5.844004 ACAAACACCGTTAATTAAATGCCA 58.156 33.333 0.00 0.00 0.00 4.92
1611 1659 7.445707 ACCGTTAATTAAATGCCATTTTTGGTT 59.554 29.630 8.15 1.96 33.82 3.67
1649 1697 4.273318 ACTTCATTTAAGCATCAGGGTCC 58.727 43.478 0.00 0.00 38.93 4.46
1667 1715 1.539388 TCCGTTTGCAACTGCCTTATG 59.461 47.619 0.00 0.00 41.18 1.90
1677 1725 5.130311 TGCAACTGCCTTATGAGGTCTAATA 59.870 40.000 5.29 0.00 45.44 0.98
1680 1728 6.808321 ACTGCCTTATGAGGTCTAATACAA 57.192 37.500 5.29 0.00 45.44 2.41
1733 1781 4.163458 GGTGAAGTAATGTGTGGATCCCTA 59.837 45.833 9.90 0.00 0.00 3.53
1752 1800 4.323485 CCCTAACTCTGAATGGTACTGCAA 60.323 45.833 0.00 0.00 0.00 4.08
1832 1880 3.028130 TCGTCCATCTTGCAGGTATACA 58.972 45.455 5.01 0.00 0.00 2.29
1870 1918 7.730364 TTAGATTCTTGTTTCAGAGGTCAAC 57.270 36.000 0.00 0.00 0.00 3.18
1876 1924 7.009179 TCTTGTTTCAGAGGTCAACATATCT 57.991 36.000 0.00 0.00 30.64 1.98
1988 2038 9.337396 CCAATGTATAGGTGCAACTTCTTATTA 57.663 33.333 10.94 0.00 36.74 0.98
2077 2128 3.426292 GCTCGTTTAATGCCTTGTTCTCC 60.426 47.826 0.00 0.00 0.00 3.71
2237 2293 8.690884 TGAAGTCAAATGTGATTTTTCTACCAA 58.309 29.630 0.00 0.00 34.13 3.67
2254 2310 9.733556 TTTCTACCAAAAGCATAGTTCTGATAA 57.266 29.630 0.00 0.00 0.00 1.75
2307 2363 8.341173 CAGGATGCAAAATAAGACAACTAGATC 58.659 37.037 0.00 0.00 0.00 2.75
2343 2400 6.544931 AGGAAGGTAAACAGTAAGAAAACACC 59.455 38.462 0.00 0.00 0.00 4.16
2352 2409 6.996509 ACAGTAAGAAAACACCGGTTAGATA 58.003 36.000 2.97 0.00 35.82 1.98
2365 2422 9.233649 ACACCGGTTAGATATTTGTTAATGAAA 57.766 29.630 2.97 0.00 0.00 2.69
2440 2497 6.774656 AGTGGCCTTGAATATTCATCTAAAGG 59.225 38.462 21.48 21.48 37.00 3.11
2463 2520 7.069986 AGGAGCTCAAGTTATAGTTCCTCATA 58.930 38.462 17.19 0.00 46.85 2.15
2466 2523 9.771534 GAGCTCAAGTTATAGTTCCTCATATTT 57.228 33.333 9.40 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.237781 CGACAAGCATAGATTTCAGAAGACTG 60.238 42.308 0.00 0.00 44.66 3.51
19 20 5.809562 CGACAAGCATAGATTTCAGAAGACT 59.190 40.000 0.00 0.00 0.00 3.24
20 21 5.006165 CCGACAAGCATAGATTTCAGAAGAC 59.994 44.000 0.00 0.00 0.00 3.01
21 22 5.105351 TCCGACAAGCATAGATTTCAGAAGA 60.105 40.000 0.00 0.00 0.00 2.87
22 23 5.111989 TCCGACAAGCATAGATTTCAGAAG 58.888 41.667 0.00 0.00 0.00 2.85
23 24 5.084818 TCCGACAAGCATAGATTTCAGAA 57.915 39.130 0.00 0.00 0.00 3.02
24 25 4.402474 TCTCCGACAAGCATAGATTTCAGA 59.598 41.667 0.00 0.00 0.00 3.27
25 26 4.686972 TCTCCGACAAGCATAGATTTCAG 58.313 43.478 0.00 0.00 0.00 3.02
26 27 4.402474 TCTCTCCGACAAGCATAGATTTCA 59.598 41.667 0.00 0.00 0.00 2.69
27 28 4.938080 TCTCTCCGACAAGCATAGATTTC 58.062 43.478 0.00 0.00 0.00 2.17
28 29 5.163364 ACATCTCTCCGACAAGCATAGATTT 60.163 40.000 0.00 0.00 0.00 2.17
29 30 4.343526 ACATCTCTCCGACAAGCATAGATT 59.656 41.667 0.00 0.00 0.00 2.40
30 31 3.894427 ACATCTCTCCGACAAGCATAGAT 59.106 43.478 0.00 0.00 0.00 1.98
31 32 3.291584 ACATCTCTCCGACAAGCATAGA 58.708 45.455 0.00 0.00 0.00 1.98
32 33 3.724508 ACATCTCTCCGACAAGCATAG 57.275 47.619 0.00 0.00 0.00 2.23
33 34 5.127194 ACTTAACATCTCTCCGACAAGCATA 59.873 40.000 0.00 0.00 0.00 3.14
34 35 4.081420 ACTTAACATCTCTCCGACAAGCAT 60.081 41.667 0.00 0.00 0.00 3.79
35 36 3.258372 ACTTAACATCTCTCCGACAAGCA 59.742 43.478 0.00 0.00 0.00 3.91
36 37 3.614616 CACTTAACATCTCTCCGACAAGC 59.385 47.826 0.00 0.00 0.00 4.01
37 38 4.810790 ACACTTAACATCTCTCCGACAAG 58.189 43.478 0.00 0.00 0.00 3.16
38 39 4.866508 ACACTTAACATCTCTCCGACAA 57.133 40.909 0.00 0.00 0.00 3.18
39 40 5.678871 GCATACACTTAACATCTCTCCGACA 60.679 44.000 0.00 0.00 0.00 4.35
40 41 4.740695 GCATACACTTAACATCTCTCCGAC 59.259 45.833 0.00 0.00 0.00 4.79
41 42 4.497507 CGCATACACTTAACATCTCTCCGA 60.498 45.833 0.00 0.00 0.00 4.55
42 43 3.731216 CGCATACACTTAACATCTCTCCG 59.269 47.826 0.00 0.00 0.00 4.63
43 44 3.491267 GCGCATACACTTAACATCTCTCC 59.509 47.826 0.30 0.00 0.00 3.71
44 45 4.208047 CAGCGCATACACTTAACATCTCTC 59.792 45.833 11.47 0.00 0.00 3.20
45 46 4.115516 CAGCGCATACACTTAACATCTCT 58.884 43.478 11.47 0.00 0.00 3.10
46 47 4.112634 TCAGCGCATACACTTAACATCTC 58.887 43.478 11.47 0.00 0.00 2.75
47 48 4.123497 TCAGCGCATACACTTAACATCT 57.877 40.909 11.47 0.00 0.00 2.90
48 49 5.006649 TGAATCAGCGCATACACTTAACATC 59.993 40.000 11.47 0.00 0.00 3.06
49 50 4.875536 TGAATCAGCGCATACACTTAACAT 59.124 37.500 11.47 0.00 0.00 2.71
50 51 4.249661 TGAATCAGCGCATACACTTAACA 58.750 39.130 11.47 0.00 0.00 2.41
51 52 4.857871 TGAATCAGCGCATACACTTAAC 57.142 40.909 11.47 0.00 0.00 2.01
52 53 5.353956 ACATTGAATCAGCGCATACACTTAA 59.646 36.000 11.47 0.00 0.00 1.85
53 54 4.875536 ACATTGAATCAGCGCATACACTTA 59.124 37.500 11.47 0.00 0.00 2.24
54 55 3.691118 ACATTGAATCAGCGCATACACTT 59.309 39.130 11.47 0.00 0.00 3.16
55 56 3.273434 ACATTGAATCAGCGCATACACT 58.727 40.909 11.47 0.00 0.00 3.55
56 57 3.680642 ACATTGAATCAGCGCATACAC 57.319 42.857 11.47 0.00 0.00 2.90
57 58 3.439825 ACAACATTGAATCAGCGCATACA 59.560 39.130 11.47 0.00 0.00 2.29
58 59 4.019919 ACAACATTGAATCAGCGCATAC 57.980 40.909 11.47 0.00 0.00 2.39
59 60 4.875536 AGTACAACATTGAATCAGCGCATA 59.124 37.500 11.47 0.00 0.00 3.14
60 61 3.691118 AGTACAACATTGAATCAGCGCAT 59.309 39.130 11.47 0.00 0.00 4.73
61 62 3.073678 AGTACAACATTGAATCAGCGCA 58.926 40.909 11.47 0.00 0.00 6.09
62 63 3.120199 ACAGTACAACATTGAATCAGCGC 60.120 43.478 0.00 0.00 0.00 5.92
63 64 4.668576 ACAGTACAACATTGAATCAGCG 57.331 40.909 0.00 0.00 0.00 5.18
64 65 7.118390 AGTCTAACAGTACAACATTGAATCAGC 59.882 37.037 0.00 0.00 0.00 4.26
65 66 8.539770 AGTCTAACAGTACAACATTGAATCAG 57.460 34.615 0.00 0.00 0.00 2.90
66 67 9.639601 CTAGTCTAACAGTACAACATTGAATCA 57.360 33.333 0.00 0.00 0.00 2.57
67 68 8.596380 GCTAGTCTAACAGTACAACATTGAATC 58.404 37.037 0.00 0.00 0.00 2.52
68 69 8.314751 AGCTAGTCTAACAGTACAACATTGAAT 58.685 33.333 0.00 0.00 0.00 2.57
69 70 7.667557 AGCTAGTCTAACAGTACAACATTGAA 58.332 34.615 0.00 0.00 0.00 2.69
70 71 7.228314 AGCTAGTCTAACAGTACAACATTGA 57.772 36.000 0.00 0.00 0.00 2.57
71 72 7.385205 ACAAGCTAGTCTAACAGTACAACATTG 59.615 37.037 0.00 0.00 0.00 2.82
72 73 7.385205 CACAAGCTAGTCTAACAGTACAACATT 59.615 37.037 0.00 0.00 0.00 2.71
73 74 6.868864 CACAAGCTAGTCTAACAGTACAACAT 59.131 38.462 0.00 0.00 0.00 2.71
74 75 6.213677 CACAAGCTAGTCTAACAGTACAACA 58.786 40.000 0.00 0.00 0.00 3.33
75 76 5.634020 CCACAAGCTAGTCTAACAGTACAAC 59.366 44.000 0.00 0.00 0.00 3.32
76 77 5.779922 CCACAAGCTAGTCTAACAGTACAA 58.220 41.667 0.00 0.00 0.00 2.41
77 78 4.321750 GCCACAAGCTAGTCTAACAGTACA 60.322 45.833 0.00 0.00 38.99 2.90
78 79 4.174762 GCCACAAGCTAGTCTAACAGTAC 58.825 47.826 0.00 0.00 38.99 2.73
79 80 3.194968 GGCCACAAGCTAGTCTAACAGTA 59.805 47.826 0.00 0.00 43.05 2.74
80 81 2.028020 GGCCACAAGCTAGTCTAACAGT 60.028 50.000 0.00 0.00 43.05 3.55
81 82 2.234908 AGGCCACAAGCTAGTCTAACAG 59.765 50.000 5.01 0.00 43.05 3.16
82 83 2.257207 AGGCCACAAGCTAGTCTAACA 58.743 47.619 5.01 0.00 43.05 2.41
83 84 3.263261 GAAGGCCACAAGCTAGTCTAAC 58.737 50.000 5.01 0.00 43.05 2.34
84 85 2.903784 TGAAGGCCACAAGCTAGTCTAA 59.096 45.455 5.01 0.00 43.05 2.10
85 86 2.497675 CTGAAGGCCACAAGCTAGTCTA 59.502 50.000 5.01 0.00 43.05 2.59
86 87 1.277557 CTGAAGGCCACAAGCTAGTCT 59.722 52.381 5.01 0.00 43.05 3.24
87 88 1.002544 ACTGAAGGCCACAAGCTAGTC 59.997 52.381 5.01 0.00 43.05 2.59
88 89 1.059913 ACTGAAGGCCACAAGCTAGT 58.940 50.000 5.01 0.00 43.05 2.57
89 90 2.191128 AACTGAAGGCCACAAGCTAG 57.809 50.000 5.01 0.00 43.05 3.42
90 91 2.903784 TCTAACTGAAGGCCACAAGCTA 59.096 45.455 5.01 0.00 43.05 3.32
91 92 1.699634 TCTAACTGAAGGCCACAAGCT 59.300 47.619 5.01 0.00 43.05 3.74
92 93 2.185004 TCTAACTGAAGGCCACAAGC 57.815 50.000 5.01 0.00 42.60 4.01
93 94 4.333926 GCTAATCTAACTGAAGGCCACAAG 59.666 45.833 5.01 0.46 0.00 3.16
94 95 4.261801 GCTAATCTAACTGAAGGCCACAA 58.738 43.478 5.01 0.00 0.00 3.33
95 96 3.370527 GGCTAATCTAACTGAAGGCCACA 60.371 47.826 5.01 3.66 37.48 4.17
96 97 3.118223 AGGCTAATCTAACTGAAGGCCAC 60.118 47.826 5.01 0.00 38.84 5.01
97 98 3.115390 AGGCTAATCTAACTGAAGGCCA 58.885 45.455 5.01 0.00 38.84 5.36
98 99 3.471680 CAGGCTAATCTAACTGAAGGCC 58.528 50.000 0.00 0.00 37.65 5.19
99 100 2.875317 GCAGGCTAATCTAACTGAAGGC 59.125 50.000 0.00 0.00 32.86 4.35
100 101 4.125703 CTGCAGGCTAATCTAACTGAAGG 58.874 47.826 5.57 0.00 33.78 3.46
101 102 3.559242 GCTGCAGGCTAATCTAACTGAAG 59.441 47.826 17.12 0.00 39.20 3.02
102 103 3.535561 GCTGCAGGCTAATCTAACTGAA 58.464 45.455 17.12 0.00 38.06 3.02
103 104 3.185246 GCTGCAGGCTAATCTAACTGA 57.815 47.619 17.12 0.00 38.06 3.41
115 116 3.494336 CGTGTAGCAGCTGCAGGC 61.494 66.667 38.24 26.42 45.16 4.85
140 141 2.520904 GCAGATCACCGCGAGAAGC 61.521 63.158 8.23 7.84 43.95 3.86
141 142 0.459237 AAGCAGATCACCGCGAGAAG 60.459 55.000 8.23 0.00 0.00 2.85
142 143 0.458543 GAAGCAGATCACCGCGAGAA 60.459 55.000 8.23 0.00 0.00 2.87
143 144 1.139734 GAAGCAGATCACCGCGAGA 59.860 57.895 8.23 5.51 0.00 4.04
144 145 0.737367 TTGAAGCAGATCACCGCGAG 60.737 55.000 8.23 0.00 0.00 5.03
145 146 0.737367 CTTGAAGCAGATCACCGCGA 60.737 55.000 8.23 0.00 0.00 5.87
146 147 1.699656 CCTTGAAGCAGATCACCGCG 61.700 60.000 0.00 0.00 0.00 6.46
147 148 0.674895 ACCTTGAAGCAGATCACCGC 60.675 55.000 0.00 0.00 0.00 5.68
148 149 1.081892 CACCTTGAAGCAGATCACCG 58.918 55.000 0.00 0.00 0.00 4.94
149 150 2.479566 TCACCTTGAAGCAGATCACC 57.520 50.000 0.00 0.00 0.00 4.02
150 151 3.755378 ACATTCACCTTGAAGCAGATCAC 59.245 43.478 0.00 0.00 40.05 3.06
151 152 4.025040 ACATTCACCTTGAAGCAGATCA 57.975 40.909 0.00 0.00 40.05 2.92
152 153 4.217118 ACAACATTCACCTTGAAGCAGATC 59.783 41.667 0.00 0.00 40.05 2.75
153 154 4.147321 ACAACATTCACCTTGAAGCAGAT 58.853 39.130 0.00 0.00 40.05 2.90
154 155 3.554934 ACAACATTCACCTTGAAGCAGA 58.445 40.909 0.00 0.00 40.05 4.26
155 156 3.996150 ACAACATTCACCTTGAAGCAG 57.004 42.857 0.00 0.00 40.05 4.24
156 157 4.275689 CAGTACAACATTCACCTTGAAGCA 59.724 41.667 0.00 0.00 40.05 3.91
157 158 4.515191 TCAGTACAACATTCACCTTGAAGC 59.485 41.667 0.00 0.00 40.05 3.86
158 159 6.808008 ATCAGTACAACATTCACCTTGAAG 57.192 37.500 0.00 0.00 40.05 3.02
159 160 6.770303 TGAATCAGTACAACATTCACCTTGAA 59.230 34.615 9.07 0.00 41.09 2.69
160 161 6.295249 TGAATCAGTACAACATTCACCTTGA 58.705 36.000 9.07 0.00 32.72 3.02
161 162 6.558771 TGAATCAGTACAACATTCACCTTG 57.441 37.500 9.07 0.00 32.72 3.61
162 163 7.231317 ACATTGAATCAGTACAACATTCACCTT 59.769 33.333 11.59 1.71 36.49 3.50
163 164 6.716628 ACATTGAATCAGTACAACATTCACCT 59.283 34.615 11.59 3.35 36.49 4.00
164 165 6.913170 ACATTGAATCAGTACAACATTCACC 58.087 36.000 11.59 0.00 36.49 4.02
165 166 8.693504 CAAACATTGAATCAGTACAACATTCAC 58.306 33.333 11.59 0.00 36.49 3.18
166 167 7.381948 GCAAACATTGAATCAGTACAACATTCA 59.618 33.333 9.07 9.07 35.25 2.57
167 168 7.596248 AGCAAACATTGAATCAGTACAACATTC 59.404 33.333 0.00 0.27 0.00 2.67
168 169 7.436118 AGCAAACATTGAATCAGTACAACATT 58.564 30.769 0.00 0.00 0.00 2.71
169 170 6.985117 AGCAAACATTGAATCAGTACAACAT 58.015 32.000 0.00 0.00 0.00 2.71
170 171 6.389830 AGCAAACATTGAATCAGTACAACA 57.610 33.333 0.00 0.00 0.00 3.33
171 172 5.858581 GGAGCAAACATTGAATCAGTACAAC 59.141 40.000 0.00 0.00 0.00 3.32
172 173 5.048083 GGGAGCAAACATTGAATCAGTACAA 60.048 40.000 0.00 0.00 0.00 2.41
173 174 4.458989 GGGAGCAAACATTGAATCAGTACA 59.541 41.667 0.00 0.00 0.00 2.90
174 175 4.142381 GGGGAGCAAACATTGAATCAGTAC 60.142 45.833 0.00 0.00 0.00 2.73
175 176 4.016444 GGGGAGCAAACATTGAATCAGTA 58.984 43.478 0.00 0.00 0.00 2.74
176 177 2.827921 GGGGAGCAAACATTGAATCAGT 59.172 45.455 0.00 0.00 0.00 3.41
177 178 2.159338 CGGGGAGCAAACATTGAATCAG 60.159 50.000 0.00 0.00 0.00 2.90
178 179 1.818060 CGGGGAGCAAACATTGAATCA 59.182 47.619 0.00 0.00 0.00 2.57
179 180 2.566952 CGGGGAGCAAACATTGAATC 57.433 50.000 0.00 0.00 0.00 2.52
218 219 1.214062 CTCCTGTCTCCAGTCGCAC 59.786 63.158 0.00 0.00 36.95 5.34
241 252 0.383231 AGTCTGCAGCAAACAACAGC 59.617 50.000 9.47 0.00 0.00 4.40
243 254 1.672363 CAGAGTCTGCAGCAAACAACA 59.328 47.619 9.47 0.00 0.00 3.33
246 257 1.413812 TCTCAGAGTCTGCAGCAAACA 59.586 47.619 15.72 0.00 0.00 2.83
259 270 6.464222 TGTAGTTAATTGGTTGGTCTCAGAG 58.536 40.000 0.00 0.00 0.00 3.35
265 276 7.606456 TCAGATTCTGTAGTTAATTGGTTGGTC 59.394 37.037 13.23 0.00 32.61 4.02
297 308 0.681733 TCCAGACTGAGCTGAACACC 59.318 55.000 3.32 0.00 38.14 4.16
305 316 4.826556 AGACTACATTTTCCAGACTGAGC 58.173 43.478 3.32 0.00 0.00 4.26
368 380 7.843490 AGAAATCGAGATTTAACGATCCAAA 57.157 32.000 10.64 0.00 46.18 3.28
383 395 7.081349 CAGCTATGGTAGAACTAGAAATCGAG 58.919 42.308 0.00 0.00 0.00 4.04
394 406 4.635765 TCAATTGCACAGCTATGGTAGAAC 59.364 41.667 0.00 0.00 0.00 3.01
430 461 6.267496 AGCGCTTATAACAAACCAGAAAAT 57.733 33.333 2.64 0.00 0.00 1.82
461 492 0.449388 GATTCAAGCAAGCCGGACTG 59.551 55.000 5.05 1.28 0.00 3.51
464 495 0.677731 CAGGATTCAAGCAAGCCGGA 60.678 55.000 5.05 0.00 46.21 5.14
466 497 1.805254 CCAGGATTCAAGCAAGCCG 59.195 57.895 0.00 0.00 46.21 5.52
505 537 5.365605 CCCTGGGTGATGAATAGTAACACTA 59.634 44.000 3.97 0.00 34.82 2.74
506 538 4.164221 CCCTGGGTGATGAATAGTAACACT 59.836 45.833 3.97 0.00 0.00 3.55
507 539 4.080526 ACCCTGGGTGATGAATAGTAACAC 60.081 45.833 19.82 0.00 32.98 3.32
509 541 4.772886 ACCCTGGGTGATGAATAGTAAC 57.227 45.455 19.82 0.00 32.98 2.50
510 542 7.541074 TCTATACCCTGGGTGATGAATAGTAA 58.459 38.462 28.64 8.87 36.19 2.24
511 543 7.111136 TCTATACCCTGGGTGATGAATAGTA 57.889 40.000 28.64 12.72 36.19 1.82
512 544 5.977533 TCTATACCCTGGGTGATGAATAGT 58.022 41.667 28.64 0.00 36.19 2.12
513 545 6.935240 TTCTATACCCTGGGTGATGAATAG 57.065 41.667 28.64 23.44 36.19 1.73
514 546 8.982471 TTATTCTATACCCTGGGTGATGAATA 57.018 34.615 28.64 27.44 36.19 1.75
515 547 7.517604 ACTTATTCTATACCCTGGGTGATGAAT 59.482 37.037 28.64 28.29 36.19 2.57
516 548 6.849697 ACTTATTCTATACCCTGGGTGATGAA 59.150 38.462 28.64 24.68 36.19 2.57
517 549 6.390504 ACTTATTCTATACCCTGGGTGATGA 58.609 40.000 28.64 18.45 36.19 2.92
518 550 6.688073 ACTTATTCTATACCCTGGGTGATG 57.312 41.667 28.64 16.53 36.19 3.07
519 551 8.990693 ATAACTTATTCTATACCCTGGGTGAT 57.009 34.615 28.64 18.27 36.19 3.06
520 552 8.808240 AATAACTTATTCTATACCCTGGGTGA 57.192 34.615 28.64 14.37 36.19 4.02
532 564 7.343833 ACCTCGGGTGAAGAATAACTTATTCTA 59.656 37.037 19.92 7.06 43.39 2.10
533 565 6.156429 ACCTCGGGTGAAGAATAACTTATTCT 59.844 38.462 15.62 15.62 44.74 2.40
534 566 6.346896 ACCTCGGGTGAAGAATAACTTATTC 58.653 40.000 12.07 12.07 38.76 1.75
535 567 6.309389 ACCTCGGGTGAAGAATAACTTATT 57.691 37.500 0.00 0.00 39.13 1.40
536 568 5.952347 ACCTCGGGTGAAGAATAACTTAT 57.048 39.130 0.00 0.00 39.13 1.73
537 569 5.954150 ACTACCTCGGGTGAAGAATAACTTA 59.046 40.000 5.90 0.00 36.67 2.24
538 570 4.776308 ACTACCTCGGGTGAAGAATAACTT 59.224 41.667 5.90 0.00 38.14 2.66
539 571 4.351127 ACTACCTCGGGTGAAGAATAACT 58.649 43.478 5.90 0.00 36.19 2.24
540 572 4.401837 AGACTACCTCGGGTGAAGAATAAC 59.598 45.833 5.90 0.00 36.19 1.89
541 573 4.607239 AGACTACCTCGGGTGAAGAATAA 58.393 43.478 5.90 0.00 36.19 1.40
542 574 4.246712 AGACTACCTCGGGTGAAGAATA 57.753 45.455 5.90 0.00 36.19 1.75
543 575 3.103080 AGACTACCTCGGGTGAAGAAT 57.897 47.619 5.90 0.00 36.19 2.40
544 576 2.599408 AGACTACCTCGGGTGAAGAA 57.401 50.000 5.90 0.00 36.19 2.52
545 577 2.599408 AAGACTACCTCGGGTGAAGA 57.401 50.000 5.90 0.00 36.19 2.87
546 578 2.097142 CGTAAGACTACCTCGGGTGAAG 59.903 54.545 5.90 0.00 36.23 3.02
547 579 2.086869 CGTAAGACTACCTCGGGTGAA 58.913 52.381 5.90 0.00 36.23 3.18
548 580 1.278985 TCGTAAGACTACCTCGGGTGA 59.721 52.381 5.90 0.00 45.01 4.02
549 581 1.742761 TCGTAAGACTACCTCGGGTG 58.257 55.000 5.90 0.02 45.01 4.61
563 595 8.693504 CGTAATTTATTTAGGAAGCGATCGTAA 58.306 33.333 17.81 3.98 36.79 3.18
564 596 7.862372 ACGTAATTTATTTAGGAAGCGATCGTA 59.138 33.333 17.81 0.00 31.57 3.43
565 597 6.698766 ACGTAATTTATTTAGGAAGCGATCGT 59.301 34.615 17.81 0.00 31.57 3.73
566 598 7.101993 ACGTAATTTATTTAGGAAGCGATCG 57.898 36.000 11.69 11.69 31.57 3.69
569 601 9.585099 TCTAAACGTAATTTATTTAGGAAGCGA 57.415 29.630 12.32 0.00 36.81 4.93
659 691 9.533831 AATGTGATTTTTCTGGTCTTATAACCT 57.466 29.630 0.00 0.00 40.20 3.50
742 774 9.316730 AGAAAATATGTACTCGCCGTAAAAATA 57.683 29.630 0.00 0.00 0.00 1.40
743 775 8.205131 AGAAAATATGTACTCGCCGTAAAAAT 57.795 30.769 0.00 0.00 0.00 1.82
744 776 7.599630 AGAAAATATGTACTCGCCGTAAAAA 57.400 32.000 0.00 0.00 0.00 1.94
745 777 7.599630 AAGAAAATATGTACTCGCCGTAAAA 57.400 32.000 0.00 0.00 0.00 1.52
746 778 7.758980 TGTAAGAAAATATGTACTCGCCGTAAA 59.241 33.333 0.00 0.00 0.00 2.01
747 779 7.257003 TGTAAGAAAATATGTACTCGCCGTAA 58.743 34.615 0.00 0.00 0.00 3.18
748 780 6.794374 TGTAAGAAAATATGTACTCGCCGTA 58.206 36.000 0.00 0.00 0.00 4.02
749 781 5.653507 TGTAAGAAAATATGTACTCGCCGT 58.346 37.500 0.00 0.00 0.00 5.68
750 782 6.764877 ATGTAAGAAAATATGTACTCGCCG 57.235 37.500 0.00 0.00 0.00 6.46
751 783 8.366671 AGAATGTAAGAAAATATGTACTCGCC 57.633 34.615 0.00 0.00 0.00 5.54
752 784 9.250624 AGAGAATGTAAGAAAATATGTACTCGC 57.749 33.333 0.00 0.00 0.00 5.03
785 817 9.337091 CGTTTCGTAAATTTGGTCTTATTTCAT 57.663 29.630 0.00 0.00 0.00 2.57
786 818 8.344098 ACGTTTCGTAAATTTGGTCTTATTTCA 58.656 29.630 0.00 0.00 38.73 2.69
787 819 8.718047 ACGTTTCGTAAATTTGGTCTTATTTC 57.282 30.769 0.00 0.00 38.73 2.17
801 833 9.546599 ACGCACCGTATTTTTACGTTTCGTAAA 62.547 37.037 18.88 18.88 46.97 2.01
802 834 8.183251 ACGCACCGTATTTTTACGTTTCGTAA 62.183 38.462 10.05 10.05 43.27 3.18
803 835 4.432244 CGCACCGTATTTTTACGTTTCGTA 60.432 41.667 0.00 0.00 41.54 3.43
804 836 3.661419 CGCACCGTATTTTTACGTTTCGT 60.661 43.478 0.00 0.00 44.35 3.85
805 837 2.828225 CGCACCGTATTTTTACGTTTCG 59.172 45.455 0.00 0.00 41.46 3.46
806 838 3.797909 ACGCACCGTATTTTTACGTTTC 58.202 40.909 0.00 0.00 41.46 2.78
807 839 3.876242 ACGCACCGTATTTTTACGTTT 57.124 38.095 0.00 0.00 41.46 3.60
808 840 3.247173 TCAACGCACCGTATTTTTACGTT 59.753 39.130 0.00 0.00 39.99 3.99
809 841 2.799412 TCAACGCACCGTATTTTTACGT 59.201 40.909 0.00 0.00 39.99 3.57
810 842 3.436817 TCAACGCACCGTATTTTTACG 57.563 42.857 0.00 0.00 39.99 3.18
811 843 9.488124 TTTTATATCAACGCACCGTATTTTTAC 57.512 29.630 0.00 0.00 39.99 2.01
813 845 8.967552 TTTTTATATCAACGCACCGTATTTTT 57.032 26.923 0.00 0.00 39.99 1.94
815 847 9.872757 CTATTTTTATATCAACGCACCGTATTT 57.127 29.630 0.00 0.00 39.99 1.40
816 848 9.263538 TCTATTTTTATATCAACGCACCGTATT 57.736 29.630 0.00 0.00 39.99 1.89
817 849 8.821147 TCTATTTTTATATCAACGCACCGTAT 57.179 30.769 0.00 0.00 39.99 3.06
818 850 8.136800 TCTCTATTTTTATATCAACGCACCGTA 58.863 33.333 0.00 0.00 39.99 4.02
819 851 6.982141 TCTCTATTTTTATATCAACGCACCGT 59.018 34.615 0.00 0.00 43.97 4.83
820 852 7.359264 CCTCTCTATTTTTATATCAACGCACCG 60.359 40.741 0.00 0.00 0.00 4.94
821 853 7.095187 CCCTCTCTATTTTTATATCAACGCACC 60.095 40.741 0.00 0.00 0.00 5.01
822 854 7.095187 CCCCTCTCTATTTTTATATCAACGCAC 60.095 40.741 0.00 0.00 0.00 5.34
823 855 6.934645 CCCCTCTCTATTTTTATATCAACGCA 59.065 38.462 0.00 0.00 0.00 5.24
824 856 6.371825 CCCCCTCTCTATTTTTATATCAACGC 59.628 42.308 0.00 0.00 0.00 4.84
825 857 7.387948 CACCCCCTCTCTATTTTTATATCAACG 59.612 40.741 0.00 0.00 0.00 4.10
826 858 8.437575 TCACCCCCTCTCTATTTTTATATCAAC 58.562 37.037 0.00 0.00 0.00 3.18
827 859 8.575736 TCACCCCCTCTCTATTTTTATATCAA 57.424 34.615 0.00 0.00 0.00 2.57
828 860 8.575736 TTCACCCCCTCTCTATTTTTATATCA 57.424 34.615 0.00 0.00 0.00 2.15
829 861 8.881262 TCTTCACCCCCTCTCTATTTTTATATC 58.119 37.037 0.00 0.00 0.00 1.63
830 862 8.814448 TCTTCACCCCCTCTCTATTTTTATAT 57.186 34.615 0.00 0.00 0.00 0.86
831 863 8.632731 TTCTTCACCCCCTCTCTATTTTTATA 57.367 34.615 0.00 0.00 0.00 0.98
832 864 7.525158 TTCTTCACCCCCTCTCTATTTTTAT 57.475 36.000 0.00 0.00 0.00 1.40
833 865 6.963117 TTCTTCACCCCCTCTCTATTTTTA 57.037 37.500 0.00 0.00 0.00 1.52
834 866 5.860648 TTCTTCACCCCCTCTCTATTTTT 57.139 39.130 0.00 0.00 0.00 1.94
835 867 7.184753 AGTTATTCTTCACCCCCTCTCTATTTT 59.815 37.037 0.00 0.00 0.00 1.82
836 868 6.678857 AGTTATTCTTCACCCCCTCTCTATTT 59.321 38.462 0.00 0.00 0.00 1.40
837 869 6.213525 AGTTATTCTTCACCCCCTCTCTATT 58.786 40.000 0.00 0.00 0.00 1.73
838 870 5.793967 AGTTATTCTTCACCCCCTCTCTAT 58.206 41.667 0.00 0.00 0.00 1.98
839 871 5.222278 AGTTATTCTTCACCCCCTCTCTA 57.778 43.478 0.00 0.00 0.00 2.43
840 872 4.081695 AGTTATTCTTCACCCCCTCTCT 57.918 45.455 0.00 0.00 0.00 3.10
841 873 6.464607 GGAATAGTTATTCTTCACCCCCTCTC 60.465 46.154 10.71 0.00 41.33 3.20
842 874 5.369993 GGAATAGTTATTCTTCACCCCCTCT 59.630 44.000 10.71 0.00 41.33 3.69
843 875 5.369993 AGGAATAGTTATTCTTCACCCCCTC 59.630 44.000 10.71 0.00 41.33 4.30
844 876 5.297799 AGGAATAGTTATTCTTCACCCCCT 58.702 41.667 10.71 0.00 41.33 4.79
845 877 5.132144 TGAGGAATAGTTATTCTTCACCCCC 59.868 44.000 17.60 0.23 46.85 5.40
846 878 6.248569 TGAGGAATAGTTATTCTTCACCCC 57.751 41.667 17.60 0.81 46.85 4.95
851 883 6.292150 CCTGGGTGAGGAATAGTTATTCTTC 58.708 44.000 13.90 13.90 46.33 2.87
852 884 5.132816 CCCTGGGTGAGGAATAGTTATTCTT 59.867 44.000 3.97 4.41 46.33 2.52
853 885 4.660771 CCCTGGGTGAGGAATAGTTATTCT 59.339 45.833 3.97 0.00 46.33 2.40
854 886 4.412528 ACCCTGGGTGAGGAATAGTTATTC 59.587 45.833 19.82 3.75 46.33 1.75
855 887 4.380791 ACCCTGGGTGAGGAATAGTTATT 58.619 43.478 19.82 0.00 46.33 1.40
856 888 4.022359 ACCCTGGGTGAGGAATAGTTAT 57.978 45.455 19.82 0.00 46.33 1.89
857 889 3.502051 ACCCTGGGTGAGGAATAGTTA 57.498 47.619 19.82 0.00 46.33 2.24
858 890 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24
869 901 1.905512 GCTATTCGTCACCCTGGGT 59.094 57.895 14.05 14.05 35.62 4.51
870 902 1.227263 CGCTATTCGTCACCCTGGG 60.227 63.158 12.28 12.28 0.00 4.45
871 903 1.883084 GCGCTATTCGTCACCCTGG 60.883 63.158 0.00 0.00 41.07 4.45
872 904 2.230940 CGCGCTATTCGTCACCCTG 61.231 63.158 5.56 0.00 41.07 4.45
873 905 1.735376 ATCGCGCTATTCGTCACCCT 61.735 55.000 5.56 0.00 41.07 4.34
874 906 0.039798 TATCGCGCTATTCGTCACCC 60.040 55.000 5.56 0.00 41.07 4.61
875 907 1.978542 ATATCGCGCTATTCGTCACC 58.021 50.000 5.56 0.00 41.07 4.02
876 908 4.376279 GCTATATATCGCGCTATTCGTCAC 59.624 45.833 7.89 0.00 41.07 3.67
877 909 4.272748 AGCTATATATCGCGCTATTCGTCA 59.727 41.667 7.89 0.00 41.07 4.35
878 910 4.774586 AGCTATATATCGCGCTATTCGTC 58.225 43.478 7.89 0.00 41.07 4.20
879 911 4.815040 AGCTATATATCGCGCTATTCGT 57.185 40.909 7.89 0.00 41.07 3.85
880 912 6.497939 AAAAGCTATATATCGCGCTATTCG 57.502 37.500 7.89 0.00 42.12 3.34
928 961 5.637810 TGTAACTAGAGCTGCACATTGTTAC 59.362 40.000 20.57 20.57 38.99 2.50
932 965 5.114780 AGATGTAACTAGAGCTGCACATTG 58.885 41.667 1.02 0.00 0.00 2.82
939 972 6.542005 TCAGAGAAGAGATGTAACTAGAGCTG 59.458 42.308 0.00 0.00 0.00 4.24
982 1020 3.011818 CCATGCTGAGTCTGCATACAAA 58.988 45.455 29.97 8.30 44.81 2.83
1044 1091 1.684734 GGGGGTTAGCGTGAGGAGA 60.685 63.158 0.00 0.00 0.00 3.71
1076 1123 0.179032 TGAGCGAACAAAGGAAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
1094 1141 2.094659 CGAGCAACTGTACGGCCTG 61.095 63.158 0.00 0.61 0.00 4.85
1095 1142 2.261671 CGAGCAACTGTACGGCCT 59.738 61.111 0.00 0.00 0.00 5.19
1224 1271 4.072131 ACGAACTGTTTGCATTCAGGTAT 58.928 39.130 18.40 7.98 36.17 2.73
1245 1292 4.580995 TCTCTAGTTGGATCAGAATCGGAC 59.419 45.833 0.00 0.00 32.24 4.79
1264 1311 4.125703 GACATTTTCGATGCCATCTCTCT 58.874 43.478 2.75 0.00 0.00 3.10
1374 1421 6.469533 CCATATTAGGGTCCTCCTCTAGAACT 60.470 46.154 0.00 0.00 44.06 3.01
1396 1443 2.357154 GCAACCAATGTAGGACCTCCAT 60.357 50.000 0.00 0.00 38.89 3.41
1404 1451 4.699735 TGAATACACTGCAACCAATGTAGG 59.300 41.667 0.00 0.00 45.15 3.18
1437 1484 9.614792 GAAGGTAGTGGTAAATCATAACATTCT 57.385 33.333 0.00 0.00 30.07 2.40
1452 1499 1.625818 CCTCAAGCAGAAGGTAGTGGT 59.374 52.381 0.00 0.00 0.00 4.16
1525 1572 4.916870 GGTTCAACAGTAACCACAGAAAC 58.083 43.478 0.84 0.00 44.83 2.78
1572 1620 4.977741 ATTAACGGTGTTTGTCGTACAG 57.022 40.909 0.00 0.00 38.78 2.74
1579 1627 5.844004 TGGCATTTAATTAACGGTGTTTGT 58.156 33.333 0.00 0.00 0.00 2.83
1586 1634 7.371126 ACCAAAAATGGCATTTAATTAACGG 57.629 32.000 24.58 17.61 0.00 4.44
1602 1650 7.571080 AAATCAAATGCAGTCAACCAAAAAT 57.429 28.000 0.00 0.00 0.00 1.82
1649 1697 2.414559 CCTCATAAGGCAGTTGCAAACG 60.415 50.000 0.00 0.00 43.95 3.60
1667 1715 5.599242 ACTAGGAGCCTTTGTATTAGACCTC 59.401 44.000 0.00 0.00 0.00 3.85
1677 1725 3.107601 TGCTATCACTAGGAGCCTTTGT 58.892 45.455 0.00 0.00 35.24 2.83
1680 1728 2.432510 GTGTGCTATCACTAGGAGCCTT 59.567 50.000 0.00 0.00 43.49 4.35
1733 1781 4.357918 AGTTGCAGTACCATTCAGAGTT 57.642 40.909 0.00 0.00 0.00 3.01
1870 1918 6.455360 AACTTACCATTGTTGCCAGATATG 57.545 37.500 0.00 0.00 0.00 1.78
1876 1924 3.300388 TGGAAACTTACCATTGTTGCCA 58.700 40.909 1.73 1.73 46.45 4.92
1988 2038 9.669887 ATTTTTGTCCATGTGCATTAATATTGT 57.330 25.926 0.00 0.00 0.00 2.71
2034 2085 6.256539 CGAGCTTTCTCTGCACTCAATAATAA 59.743 38.462 0.00 0.00 37.19 1.40
2077 2128 2.430332 TCTTGGCAAAGAAAACCCTGTG 59.570 45.455 0.00 0.00 39.52 3.66
2307 2363 4.647399 TGTTTACCTTCCTTTTTCCCACTG 59.353 41.667 0.00 0.00 0.00 3.66
2365 2422 4.310740 ACCTGGACATTTCCTCCTATCAT 58.689 43.478 0.00 0.00 43.31 2.45
2373 2430 6.609616 TCAAAGTTAAAACCTGGACATTTCCT 59.390 34.615 0.00 0.00 43.31 3.36
2416 2473 6.772716 TCCTTTAGATGAATATTCAAGGCCAC 59.227 38.462 21.50 9.32 41.13 5.01
2440 2497 9.771534 AAATATGAGGAACTATAACTTGAGCTC 57.228 33.333 6.82 6.82 41.55 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.