Multiple sequence alignment - TraesCS3A01G484400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G484400 chr3A 100.000 3614 0 0 1 3614 714158914 714155301 0.000000e+00 6674.0
1 TraesCS3A01G484400 chr3A 90.732 205 5 3 562 766 632628314 632628124 9.950000e-66 261.0
2 TraesCS3A01G484400 chr3A 95.312 64 2 1 1556 1619 714157318 714157256 2.300000e-17 100.0
3 TraesCS3A01G484400 chr3A 95.312 64 2 1 1597 1659 714157359 714157296 2.300000e-17 100.0
4 TraesCS3A01G484400 chr3A 96.970 33 0 1 778 810 101609931 101609962 2.000000e-03 54.7
5 TraesCS3A01G484400 chr3B 87.519 1330 84 31 2318 3614 772400498 772399218 0.000000e+00 1461.0
6 TraesCS3A01G484400 chr3B 85.466 922 94 30 1342 2248 772401554 772400658 0.000000e+00 924.0
7 TraesCS3A01G484400 chr3B 81.020 353 36 17 933 1256 772401978 772401628 5.990000e-63 252.0
8 TraesCS3A01G484400 chr3D 94.224 606 32 2 1642 2247 578413396 578413998 0.000000e+00 922.0
9 TraesCS3A01G484400 chr3D 89.281 737 48 17 2894 3614 578414552 578415273 0.000000e+00 894.0
10 TraesCS3A01G484400 chr3D 93.573 529 17 7 2319 2833 578413996 578414521 0.000000e+00 773.0
11 TraesCS3A01G484400 chr3D 92.901 324 16 2 809 1132 578412623 578412939 7.070000e-127 464.0
12 TraesCS3A01G484400 chr3D 88.845 251 15 8 1341 1579 578413164 578413413 2.730000e-76 296.0
13 TraesCS3A01G484400 chr3D 97.531 81 2 0 1169 1249 578413012 578413092 4.870000e-29 139.0
14 TraesCS3A01G484400 chr3D 96.970 33 1 0 778 810 51679213 51679181 5.040000e-04 56.5
15 TraesCS3A01G484400 chr4D 91.924 582 30 6 1 565 35176585 35177166 0.000000e+00 798.0
16 TraesCS3A01G484400 chr4D 89.189 74 7 1 699 771 317178568 317178641 1.380000e-14 91.6
17 TraesCS3A01G484400 chr4D 96.970 33 1 0 778 810 17079266 17079234 5.040000e-04 56.5
18 TraesCS3A01G484400 chr5B 92.179 537 25 6 1 520 341506652 341507188 0.000000e+00 743.0
19 TraesCS3A01G484400 chr5B 86.111 108 14 1 458 565 635091407 635091513 8.200000e-22 115.0
20 TraesCS3A01G484400 chr7A 92.148 433 34 0 133 565 386602535 386602967 2.390000e-171 612.0
21 TraesCS3A01G484400 chr7A 82.253 293 31 7 2 277 17092374 17092662 2.170000e-57 233.0
22 TraesCS3A01G484400 chr4A 83.507 576 65 8 12 558 579373746 579373172 8.950000e-141 510.0
23 TraesCS3A01G484400 chr1A 79.526 591 103 15 1704 2279 57634781 57635368 4.350000e-109 405.0
24 TraesCS3A01G484400 chr1A 78.771 358 46 18 1159 1499 57634319 57634663 2.830000e-51 213.0
25 TraesCS3A01G484400 chr1A 100.000 33 0 0 778 810 553880497 553880529 1.080000e-05 62.1
26 TraesCS3A01G484400 chr1D 78.912 588 105 17 1705 2279 58757189 58757770 7.320000e-102 381.0
27 TraesCS3A01G484400 chr1D 80.966 352 47 12 1159 1499 58756745 58757087 9.950000e-66 261.0
28 TraesCS3A01G484400 chr2D 85.276 326 35 6 240 565 197866300 197866612 1.250000e-84 324.0
29 TraesCS3A01G484400 chr2D 91.473 129 10 1 2 130 197866071 197866198 3.710000e-40 176.0
30 TraesCS3A01G484400 chr4B 86.207 290 39 1 275 564 34912133 34912421 2.710000e-81 313.0
31 TraesCS3A01G484400 chr2B 92.233 206 14 2 562 766 106885451 106885247 1.270000e-74 291.0
32 TraesCS3A01G484400 chr1B 88.235 204 17 1 562 758 43146328 43146125 1.680000e-58 237.0
33 TraesCS3A01G484400 chr1B 90.476 84 8 0 1172 1255 94225596 94225679 1.060000e-20 111.0
34 TraesCS3A01G484400 chr1B 94.872 39 2 0 778 816 661994678 661994640 1.080000e-05 62.1
35 TraesCS3A01G484400 chr7D 87.195 164 21 0 401 564 523315700 523315537 1.710000e-43 187.0
36 TraesCS3A01G484400 chr6B 79.221 308 35 11 2 289 643863137 643862839 1.710000e-43 187.0
37 TraesCS3A01G484400 chr6A 100.000 33 0 0 778 810 593564653 593564621 1.080000e-05 62.1
38 TraesCS3A01G484400 chr6A 96.875 32 1 0 777 808 156744686 156744717 2.000000e-03 54.7
39 TraesCS3A01G484400 chr6D 100.000 29 0 0 781 809 97928217 97928189 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G484400 chr3A 714155301 714158914 3613 True 2291.333333 6674 96.874667 1 3614 3 chr3A.!!$R2 3613
1 TraesCS3A01G484400 chr3B 772399218 772401978 2760 True 879.000000 1461 84.668333 933 3614 3 chr3B.!!$R1 2681
2 TraesCS3A01G484400 chr3D 578412623 578415273 2650 False 581.333333 922 92.725833 809 3614 6 chr3D.!!$F1 2805
3 TraesCS3A01G484400 chr4D 35176585 35177166 581 False 798.000000 798 91.924000 1 565 1 chr4D.!!$F1 564
4 TraesCS3A01G484400 chr5B 341506652 341507188 536 False 743.000000 743 92.179000 1 520 1 chr5B.!!$F1 519
5 TraesCS3A01G484400 chr4A 579373172 579373746 574 True 510.000000 510 83.507000 12 558 1 chr4A.!!$R1 546
6 TraesCS3A01G484400 chr1A 57634319 57635368 1049 False 309.000000 405 79.148500 1159 2279 2 chr1A.!!$F2 1120
7 TraesCS3A01G484400 chr1D 58756745 58757770 1025 False 321.000000 381 79.939000 1159 2279 2 chr1D.!!$F1 1120
8 TraesCS3A01G484400 chr2D 197866071 197866612 541 False 250.000000 324 88.374500 2 565 2 chr2D.!!$F1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 802 0.097674 GCATTGGTCTGTCGTCATGC 59.902 55.0 0.00 0.00 0.0 4.06 F
1302 1412 0.028505 CCAGCAACGATATGTGCTGC 59.971 55.0 20.02 8.75 44.4 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 2530 0.035317 TCTTCACAGCCTGCGACAAT 59.965 50.0 0.0 0.0 0.00 2.71 R
3125 3459 0.187361 AGCAACTGGTTTAGCCCCAA 59.813 50.0 0.0 0.0 36.04 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 1.573829 GCTTGACCAATGTTCGCGGA 61.574 55.000 6.13 0.00 0.00 5.54
72 74 2.031044 TTCGCGGATTACATGCACGC 62.031 55.000 6.13 5.62 46.04 5.34
132 151 5.297776 ACCGGCTAGACGCGTAAATATATAT 59.702 40.000 13.97 0.00 40.44 0.86
273 293 2.550180 CGATCTAGAGCATCGACAGGAA 59.450 50.000 8.99 0.00 44.95 3.36
291 315 1.743958 GAAGCAGTGGAGCTCGTACTA 59.256 52.381 18.38 0.00 45.89 1.82
342 366 0.114954 AGTGGTCAAATGGGCATGGT 59.885 50.000 0.00 0.00 0.00 3.55
385 417 2.491693 CCCACGTGGCAATCATTAAGTT 59.508 45.455 29.75 0.00 0.00 2.66
411 443 0.913451 AGTCAGCAATCCCAGCCTCT 60.913 55.000 0.00 0.00 0.00 3.69
468 500 3.954904 TCAAAAGGTTCAAAATGACCGGA 59.045 39.130 9.46 0.00 0.00 5.14
484 516 3.178865 ACCGGAATCTGAAAGGTTAGGA 58.821 45.455 9.46 0.00 37.45 2.94
520 553 9.603921 CAAGGATTTAGACGTAAGGGTTTATTA 57.396 33.333 0.00 0.00 46.39 0.98
565 598 7.086685 AGGGTTTATTTTAGACTTCACTCCA 57.913 36.000 0.00 0.00 0.00 3.86
566 599 6.940867 AGGGTTTATTTTAGACTTCACTCCAC 59.059 38.462 0.00 0.00 0.00 4.02
567 600 6.150641 GGGTTTATTTTAGACTTCACTCCACC 59.849 42.308 0.00 0.00 0.00 4.61
568 601 6.940867 GGTTTATTTTAGACTTCACTCCACCT 59.059 38.462 0.00 0.00 0.00 4.00
569 602 7.119407 GGTTTATTTTAGACTTCACTCCACCTC 59.881 40.741 0.00 0.00 0.00 3.85
570 603 4.618920 TTTTAGACTTCACTCCACCTCC 57.381 45.455 0.00 0.00 0.00 4.30
571 604 3.544698 TTAGACTTCACTCCACCTCCT 57.455 47.619 0.00 0.00 0.00 3.69
572 605 1.931635 AGACTTCACTCCACCTCCTC 58.068 55.000 0.00 0.00 0.00 3.71
573 606 0.899019 GACTTCACTCCACCTCCTCC 59.101 60.000 0.00 0.00 0.00 4.30
574 607 0.489567 ACTTCACTCCACCTCCTCCT 59.510 55.000 0.00 0.00 0.00 3.69
575 608 1.190643 CTTCACTCCACCTCCTCCTC 58.809 60.000 0.00 0.00 0.00 3.71
576 609 0.612174 TTCACTCCACCTCCTCCTCG 60.612 60.000 0.00 0.00 0.00 4.63
577 610 1.000771 CACTCCACCTCCTCCTCGA 60.001 63.158 0.00 0.00 0.00 4.04
578 611 1.000646 ACTCCACCTCCTCCTCGAC 60.001 63.158 0.00 0.00 0.00 4.20
579 612 1.755008 CTCCACCTCCTCCTCGACC 60.755 68.421 0.00 0.00 0.00 4.79
580 613 2.218115 CTCCACCTCCTCCTCGACCT 62.218 65.000 0.00 0.00 0.00 3.85
581 614 1.755008 CCACCTCCTCCTCGACCTC 60.755 68.421 0.00 0.00 0.00 3.85
582 615 1.755008 CACCTCCTCCTCGACCTCC 60.755 68.421 0.00 0.00 0.00 4.30
583 616 2.239439 ACCTCCTCCTCGACCTCCA 61.239 63.158 0.00 0.00 0.00 3.86
584 617 1.755008 CCTCCTCCTCGACCTCCAC 60.755 68.421 0.00 0.00 0.00 4.02
585 618 1.755008 CTCCTCCTCGACCTCCACC 60.755 68.421 0.00 0.00 0.00 4.61
586 619 2.037367 CCTCCTCGACCTCCACCA 59.963 66.667 0.00 0.00 0.00 4.17
587 620 2.352032 CCTCCTCGACCTCCACCAC 61.352 68.421 0.00 0.00 0.00 4.16
588 621 2.283676 TCCTCGACCTCCACCACC 60.284 66.667 0.00 0.00 0.00 4.61
589 622 3.760035 CCTCGACCTCCACCACCG 61.760 72.222 0.00 0.00 0.00 4.94
590 623 4.436998 CTCGACCTCCACCACCGC 62.437 72.222 0.00 0.00 0.00 5.68
593 626 4.083862 GACCTCCACCACCGCCTC 62.084 72.222 0.00 0.00 0.00 4.70
596 629 4.394712 CTCCACCACCGCCTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
601 634 4.530857 CCACCGCCTCCACCGATC 62.531 72.222 0.00 0.00 0.00 3.69
602 635 3.461773 CACCGCCTCCACCGATCT 61.462 66.667 0.00 0.00 0.00 2.75
603 636 2.125326 CACCGCCTCCACCGATCTA 61.125 63.158 0.00 0.00 0.00 1.98
604 637 1.828660 ACCGCCTCCACCGATCTAG 60.829 63.158 0.00 0.00 0.00 2.43
605 638 2.336809 CGCCTCCACCGATCTAGC 59.663 66.667 0.00 0.00 0.00 3.42
606 639 2.196925 CGCCTCCACCGATCTAGCT 61.197 63.158 0.00 0.00 0.00 3.32
607 640 1.663173 GCCTCCACCGATCTAGCTC 59.337 63.158 0.00 0.00 0.00 4.09
608 641 1.953017 CCTCCACCGATCTAGCTCG 59.047 63.158 9.00 9.00 38.37 5.03
609 642 0.820074 CCTCCACCGATCTAGCTCGT 60.820 60.000 14.35 0.97 36.93 4.18
610 643 0.309302 CTCCACCGATCTAGCTCGTG 59.691 60.000 14.35 11.80 36.93 4.35
611 644 0.393944 TCCACCGATCTAGCTCGTGT 60.394 55.000 14.35 9.20 36.93 4.49
612 645 1.134310 TCCACCGATCTAGCTCGTGTA 60.134 52.381 14.35 0.00 36.93 2.90
613 646 1.002684 CCACCGATCTAGCTCGTGTAC 60.003 57.143 14.35 0.00 36.93 2.90
614 647 1.002684 CACCGATCTAGCTCGTGTACC 60.003 57.143 14.35 0.00 36.93 3.34
615 648 1.134159 ACCGATCTAGCTCGTGTACCT 60.134 52.381 14.35 0.00 36.93 3.08
616 649 1.532007 CCGATCTAGCTCGTGTACCTC 59.468 57.143 14.35 0.00 36.93 3.85
617 650 2.485903 CGATCTAGCTCGTGTACCTCT 58.514 52.381 7.81 0.00 34.00 3.69
618 651 2.477375 CGATCTAGCTCGTGTACCTCTC 59.523 54.545 7.81 0.00 34.00 3.20
619 652 2.328819 TCTAGCTCGTGTACCTCTCC 57.671 55.000 0.00 0.00 0.00 3.71
620 653 1.838715 TCTAGCTCGTGTACCTCTCCT 59.161 52.381 0.00 0.00 0.00 3.69
621 654 2.239150 TCTAGCTCGTGTACCTCTCCTT 59.761 50.000 0.00 0.00 0.00 3.36
622 655 1.465794 AGCTCGTGTACCTCTCCTTC 58.534 55.000 0.00 0.00 0.00 3.46
623 656 1.004979 AGCTCGTGTACCTCTCCTTCT 59.995 52.381 0.00 0.00 0.00 2.85
624 657 1.402613 GCTCGTGTACCTCTCCTTCTC 59.597 57.143 0.00 0.00 0.00 2.87
625 658 2.018515 CTCGTGTACCTCTCCTTCTCC 58.981 57.143 0.00 0.00 0.00 3.71
626 659 1.634459 TCGTGTACCTCTCCTTCTCCT 59.366 52.381 0.00 0.00 0.00 3.69
627 660 2.018515 CGTGTACCTCTCCTTCTCCTC 58.981 57.143 0.00 0.00 0.00 3.71
628 661 2.380941 GTGTACCTCTCCTTCTCCTCC 58.619 57.143 0.00 0.00 0.00 4.30
629 662 2.024751 GTGTACCTCTCCTTCTCCTCCT 60.025 54.545 0.00 0.00 0.00 3.69
630 663 2.655407 TGTACCTCTCCTTCTCCTCCTT 59.345 50.000 0.00 0.00 0.00 3.36
631 664 3.077695 TGTACCTCTCCTTCTCCTCCTTT 59.922 47.826 0.00 0.00 0.00 3.11
632 665 3.283712 ACCTCTCCTTCTCCTCCTTTT 57.716 47.619 0.00 0.00 0.00 2.27
633 666 3.178046 ACCTCTCCTTCTCCTCCTTTTC 58.822 50.000 0.00 0.00 0.00 2.29
634 667 3.181400 ACCTCTCCTTCTCCTCCTTTTCT 60.181 47.826 0.00 0.00 0.00 2.52
635 668 3.843619 CCTCTCCTTCTCCTCCTTTTCTT 59.156 47.826 0.00 0.00 0.00 2.52
636 669 4.288366 CCTCTCCTTCTCCTCCTTTTCTTT 59.712 45.833 0.00 0.00 0.00 2.52
637 670 5.234466 TCTCCTTCTCCTCCTTTTCTTTG 57.766 43.478 0.00 0.00 0.00 2.77
638 671 4.660771 TCTCCTTCTCCTCCTTTTCTTTGT 59.339 41.667 0.00 0.00 0.00 2.83
639 672 4.974399 TCCTTCTCCTCCTTTTCTTTGTC 58.026 43.478 0.00 0.00 0.00 3.18
640 673 3.748568 CCTTCTCCTCCTTTTCTTTGTCG 59.251 47.826 0.00 0.00 0.00 4.35
641 674 2.767505 TCTCCTCCTTTTCTTTGTCGC 58.232 47.619 0.00 0.00 0.00 5.19
642 675 1.807142 CTCCTCCTTTTCTTTGTCGCC 59.193 52.381 0.00 0.00 0.00 5.54
643 676 0.517316 CCTCCTTTTCTTTGTCGCCG 59.483 55.000 0.00 0.00 0.00 6.46
644 677 0.110192 CTCCTTTTCTTTGTCGCCGC 60.110 55.000 0.00 0.00 0.00 6.53
645 678 1.081442 CCTTTTCTTTGTCGCCGCC 60.081 57.895 0.00 0.00 0.00 6.13
646 679 1.652012 CTTTTCTTTGTCGCCGCCA 59.348 52.632 0.00 0.00 0.00 5.69
647 680 0.660300 CTTTTCTTTGTCGCCGCCAC 60.660 55.000 0.00 0.00 0.00 5.01
648 681 1.098712 TTTTCTTTGTCGCCGCCACT 61.099 50.000 0.00 0.00 0.00 4.00
649 682 0.249953 TTTCTTTGTCGCCGCCACTA 60.250 50.000 0.00 0.00 0.00 2.74
650 683 0.947180 TTCTTTGTCGCCGCCACTAC 60.947 55.000 0.00 0.00 0.00 2.73
651 684 1.666553 CTTTGTCGCCGCCACTACA 60.667 57.895 0.00 0.00 0.00 2.74
652 685 1.626654 CTTTGTCGCCGCCACTACAG 61.627 60.000 0.00 0.00 0.00 2.74
653 686 4.735132 TGTCGCCGCCACTACAGC 62.735 66.667 0.00 0.00 0.00 4.40
675 708 4.863925 GCTCGCGCACCTCTCCTC 62.864 72.222 8.75 0.00 35.78 3.71
676 709 4.200283 CTCGCGCACCTCTCCTCC 62.200 72.222 8.75 0.00 0.00 4.30
677 710 4.742649 TCGCGCACCTCTCCTCCT 62.743 66.667 8.75 0.00 0.00 3.69
678 711 4.200283 CGCGCACCTCTCCTCCTC 62.200 72.222 8.75 0.00 0.00 3.71
679 712 3.844090 GCGCACCTCTCCTCCTCC 61.844 72.222 0.30 0.00 0.00 4.30
680 713 2.043450 CGCACCTCTCCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
681 714 1.227664 CGCACCTCTCCTCCTCCTA 59.772 63.158 0.00 0.00 0.00 2.94
682 715 0.821711 CGCACCTCTCCTCCTCCTAG 60.822 65.000 0.00 0.00 0.00 3.02
683 716 0.553819 GCACCTCTCCTCCTCCTAGA 59.446 60.000 0.00 0.00 0.00 2.43
684 717 1.752788 GCACCTCTCCTCCTCCTAGAC 60.753 61.905 0.00 0.00 0.00 2.59
685 718 1.566703 CACCTCTCCTCCTCCTAGACA 59.433 57.143 0.00 0.00 0.00 3.41
686 719 2.176798 CACCTCTCCTCCTCCTAGACAT 59.823 54.545 0.00 0.00 0.00 3.06
687 720 2.862597 ACCTCTCCTCCTCCTAGACATT 59.137 50.000 0.00 0.00 0.00 2.71
688 721 3.117284 ACCTCTCCTCCTCCTAGACATTC 60.117 52.174 0.00 0.00 0.00 2.67
689 722 3.146066 CTCTCCTCCTCCTAGACATTCG 58.854 54.545 0.00 0.00 0.00 3.34
690 723 2.510382 TCTCCTCCTCCTAGACATTCGT 59.490 50.000 0.00 0.00 0.00 3.85
691 724 2.882137 CTCCTCCTCCTAGACATTCGTC 59.118 54.545 0.00 0.00 42.95 4.20
699 732 3.782042 GACATTCGTCGCCACCTC 58.218 61.111 0.00 0.00 31.07 3.85
700 733 1.810030 GACATTCGTCGCCACCTCC 60.810 63.158 0.00 0.00 31.07 4.30
701 734 2.264480 CATTCGTCGCCACCTCCA 59.736 61.111 0.00 0.00 0.00 3.86
702 735 2.100631 CATTCGTCGCCACCTCCAC 61.101 63.158 0.00 0.00 0.00 4.02
703 736 3.310860 ATTCGTCGCCACCTCCACC 62.311 63.158 0.00 0.00 0.00 4.61
706 739 4.699522 GTCGCCACCTCCACCCAC 62.700 72.222 0.00 0.00 0.00 4.61
717 750 4.742201 CACCCACGTGGCTCGGAG 62.742 72.222 29.75 16.50 44.69 4.63
728 761 4.200283 CTCGGAGCCTCGGAGCAC 62.200 72.222 15.27 0.00 37.10 4.40
731 764 3.474570 GGAGCCTCGGAGCACCAT 61.475 66.667 0.00 0.00 42.46 3.55
732 765 2.202987 GAGCCTCGGAGCACCATG 60.203 66.667 0.00 0.00 35.59 3.66
733 766 2.685017 AGCCTCGGAGCACCATGA 60.685 61.111 0.00 0.00 35.59 3.07
734 767 2.512515 GCCTCGGAGCACCATGAC 60.513 66.667 0.00 0.00 35.59 3.06
735 768 2.187946 CCTCGGAGCACCATGACC 59.812 66.667 0.00 0.00 35.59 4.02
736 769 2.187946 CTCGGAGCACCATGACCC 59.812 66.667 0.00 0.00 35.59 4.46
737 770 3.391665 CTCGGAGCACCATGACCCC 62.392 68.421 0.00 0.00 35.59 4.95
738 771 4.489771 CGGAGCACCATGACCCCC 62.490 72.222 0.00 0.00 35.59 5.40
739 772 3.338250 GGAGCACCATGACCCCCA 61.338 66.667 0.00 0.00 35.97 4.96
740 773 2.044946 GAGCACCATGACCCCCAC 60.045 66.667 0.00 0.00 0.00 4.61
741 774 3.645268 GAGCACCATGACCCCCACC 62.645 68.421 0.00 0.00 0.00 4.61
742 775 4.759205 GCACCATGACCCCCACCC 62.759 72.222 0.00 0.00 0.00 4.61
743 776 4.060667 CACCATGACCCCCACCCC 62.061 72.222 0.00 0.00 0.00 4.95
760 793 3.853330 CGCCGTCGCATTGGTCTG 61.853 66.667 0.00 0.00 34.03 3.51
761 794 2.742372 GCCGTCGCATTGGTCTGT 60.742 61.111 0.00 0.00 34.03 3.41
762 795 2.740714 GCCGTCGCATTGGTCTGTC 61.741 63.158 0.00 0.00 34.03 3.51
763 796 2.444624 CCGTCGCATTGGTCTGTCG 61.445 63.158 0.00 0.00 0.00 4.35
764 797 1.733041 CGTCGCATTGGTCTGTCGT 60.733 57.895 0.00 0.00 0.00 4.34
765 798 1.674611 CGTCGCATTGGTCTGTCGTC 61.675 60.000 0.00 0.00 0.00 4.20
766 799 0.666274 GTCGCATTGGTCTGTCGTCA 60.666 55.000 0.00 0.00 0.00 4.35
767 800 0.246360 TCGCATTGGTCTGTCGTCAT 59.754 50.000 0.00 0.00 0.00 3.06
768 801 0.371301 CGCATTGGTCTGTCGTCATG 59.629 55.000 0.00 0.00 0.00 3.07
769 802 0.097674 GCATTGGTCTGTCGTCATGC 59.902 55.000 0.00 0.00 0.00 4.06
770 803 1.441738 CATTGGTCTGTCGTCATGCA 58.558 50.000 0.00 0.00 0.00 3.96
771 804 1.805943 CATTGGTCTGTCGTCATGCAA 59.194 47.619 0.00 0.00 0.00 4.08
772 805 1.960417 TTGGTCTGTCGTCATGCAAA 58.040 45.000 0.00 0.00 0.00 3.68
773 806 1.960417 TGGTCTGTCGTCATGCAAAA 58.040 45.000 0.00 0.00 0.00 2.44
774 807 2.503331 TGGTCTGTCGTCATGCAAAAT 58.497 42.857 0.00 0.00 0.00 1.82
775 808 2.483877 TGGTCTGTCGTCATGCAAAATC 59.516 45.455 0.00 0.00 0.00 2.17
776 809 2.483877 GGTCTGTCGTCATGCAAAATCA 59.516 45.455 0.00 0.00 0.00 2.57
777 810 3.058293 GGTCTGTCGTCATGCAAAATCAA 60.058 43.478 0.00 0.00 0.00 2.57
778 811 4.536065 GTCTGTCGTCATGCAAAATCAAA 58.464 39.130 0.00 0.00 0.00 2.69
779 812 4.614284 GTCTGTCGTCATGCAAAATCAAAG 59.386 41.667 0.00 0.00 0.00 2.77
780 813 4.275689 TCTGTCGTCATGCAAAATCAAAGT 59.724 37.500 0.00 0.00 0.00 2.66
781 814 4.536065 TGTCGTCATGCAAAATCAAAGTC 58.464 39.130 0.00 0.00 0.00 3.01
782 815 4.275689 TGTCGTCATGCAAAATCAAAGTCT 59.724 37.500 0.00 0.00 0.00 3.24
783 816 4.848299 GTCGTCATGCAAAATCAAAGTCTC 59.152 41.667 0.00 0.00 0.00 3.36
784 817 4.514816 TCGTCATGCAAAATCAAAGTCTCA 59.485 37.500 0.00 0.00 0.00 3.27
785 818 4.849926 CGTCATGCAAAATCAAAGTCTCAG 59.150 41.667 0.00 0.00 0.00 3.35
786 819 5.561532 CGTCATGCAAAATCAAAGTCTCAGT 60.562 40.000 0.00 0.00 0.00 3.41
787 820 5.855395 GTCATGCAAAATCAAAGTCTCAGTC 59.145 40.000 0.00 0.00 0.00 3.51
788 821 4.472691 TGCAAAATCAAAGTCTCAGTCG 57.527 40.909 0.00 0.00 0.00 4.18
789 822 4.126437 TGCAAAATCAAAGTCTCAGTCGA 58.874 39.130 0.00 0.00 0.00 4.20
790 823 4.756642 TGCAAAATCAAAGTCTCAGTCGAT 59.243 37.500 0.00 0.00 0.00 3.59
791 824 5.239306 TGCAAAATCAAAGTCTCAGTCGATT 59.761 36.000 0.00 0.00 0.00 3.34
792 825 5.566774 GCAAAATCAAAGTCTCAGTCGATTG 59.433 40.000 0.68 0.68 0.00 2.67
793 826 6.566564 GCAAAATCAAAGTCTCAGTCGATTGA 60.567 38.462 10.44 10.44 0.00 2.57
794 827 6.718454 AAATCAAAGTCTCAGTCGATTGAG 57.282 37.500 27.00 27.00 44.74 3.02
807 840 5.847670 GTCGATTGAGACTTAGCAAAACT 57.152 39.130 0.00 0.00 38.09 2.66
808 841 5.612865 GTCGATTGAGACTTAGCAAAACTG 58.387 41.667 0.00 0.00 38.09 3.16
809 842 5.177696 GTCGATTGAGACTTAGCAAAACTGT 59.822 40.000 0.00 0.00 38.09 3.55
810 843 5.405571 TCGATTGAGACTTAGCAAAACTGTC 59.594 40.000 0.00 0.00 0.00 3.51
825 858 6.686630 CAAAACTGTCATAAATTAGTGCCCA 58.313 36.000 0.00 0.00 0.00 5.36
857 890 2.618053 CGTGACGCTATCCTTTTTCCT 58.382 47.619 0.00 0.00 0.00 3.36
862 895 6.347888 CGTGACGCTATCCTTTTTCCTTTTTA 60.348 38.462 0.00 0.00 0.00 1.52
879 912 7.123383 TCCTTTTTAAGAAGAAACTCAAGGGT 58.877 34.615 7.30 0.00 0.00 4.34
888 921 7.545489 AGAAGAAACTCAAGGGTATTACGTAG 58.455 38.462 0.00 0.00 0.00 3.51
890 923 7.944729 AGAAACTCAAGGGTATTACGTAGTA 57.055 36.000 0.00 0.00 45.11 1.82
891 924 7.766283 AGAAACTCAAGGGTATTACGTAGTAC 58.234 38.462 17.35 17.35 45.76 2.73
892 925 7.613411 AGAAACTCAAGGGTATTACGTAGTACT 59.387 37.037 22.65 0.00 45.76 2.73
893 926 8.807948 AAACTCAAGGGTATTACGTAGTACTA 57.192 34.615 22.65 0.00 45.76 1.82
904 937 9.382244 GTATTACGTAGTACTACAAATTACCGG 57.618 37.037 28.03 13.58 45.76 5.28
906 939 4.044426 CGTAGTACTACAAATTACCGGCC 58.956 47.826 28.03 0.00 35.87 6.13
1108 1150 1.084289 CTCCCGCTTTAAAACCCTCG 58.916 55.000 0.00 0.00 0.00 4.63
1109 1151 0.956902 TCCCGCTTTAAAACCCTCGC 60.957 55.000 0.00 0.00 0.00 5.03
1146 1200 2.555547 GCAGTTGGTCACAGGCACC 61.556 63.158 0.00 0.00 0.00 5.01
1147 1201 1.149174 CAGTTGGTCACAGGCACCT 59.851 57.895 0.00 0.00 34.66 4.00
1148 1202 0.886490 CAGTTGGTCACAGGCACCTC 60.886 60.000 0.00 0.00 34.66 3.85
1151 1205 1.640593 TTGGTCACAGGCACCTCCAA 61.641 55.000 3.98 3.98 37.29 3.53
1152 1206 1.302832 GGTCACAGGCACCTCCAAG 60.303 63.158 0.00 0.00 37.29 3.61
1156 1220 1.770110 ACAGGCACCTCCAAGTCCA 60.770 57.895 0.00 0.00 37.29 4.02
1169 1233 1.002468 CAAGTCCAAACACAGGCGAAG 60.002 52.381 0.00 0.00 0.00 3.79
1170 1234 0.468226 AGTCCAAACACAGGCGAAGA 59.532 50.000 0.00 0.00 0.00 2.87
1258 1345 3.915437 CCTTCAAAGGTGCGTACAAAT 57.085 42.857 5.86 0.00 41.41 2.32
1263 1350 5.303747 TCAAAGGTGCGTACAAATAATGG 57.696 39.130 5.86 0.00 0.00 3.16
1265 1352 5.123186 TCAAAGGTGCGTACAAATAATGGAG 59.877 40.000 5.86 0.00 0.00 3.86
1266 1353 3.541632 AGGTGCGTACAAATAATGGAGG 58.458 45.455 5.86 0.00 0.00 4.30
1282 1392 2.637947 GGAGGACTCTTTTCATCCTGC 58.362 52.381 0.00 0.00 43.12 4.85
1294 1404 0.179048 CATCCTGCCCAGCAACGATA 60.179 55.000 0.00 0.00 38.41 2.92
1295 1405 0.767375 ATCCTGCCCAGCAACGATAT 59.233 50.000 0.00 0.00 38.41 1.63
1296 1406 0.179048 TCCTGCCCAGCAACGATATG 60.179 55.000 0.00 0.00 38.41 1.78
1299 1409 1.356624 GCCCAGCAACGATATGTGC 59.643 57.895 0.00 0.00 0.00 4.57
1302 1412 0.028505 CCAGCAACGATATGTGCTGC 59.971 55.000 20.02 8.75 44.40 5.25
1303 1413 0.315625 CAGCAACGATATGTGCTGCG 60.316 55.000 15.81 0.00 41.95 5.18
1305 1415 0.927537 GCAACGATATGTGCTGCGTA 59.072 50.000 0.00 0.00 35.74 4.42
1306 1416 1.326245 GCAACGATATGTGCTGCGTAA 59.674 47.619 0.00 0.00 35.74 3.18
1307 1417 2.845764 GCAACGATATGTGCTGCGTAAC 60.846 50.000 0.00 0.00 35.74 2.50
1308 1418 1.197055 ACGATATGTGCTGCGTAACG 58.803 50.000 0.00 1.82 39.66 3.18
1309 1419 0.502695 CGATATGTGCTGCGTAACGG 59.497 55.000 0.00 0.00 33.16 4.44
1327 1437 3.687102 CTGACGGCCGGTGGTGTA 61.687 66.667 31.76 6.07 0.00 2.90
1333 1443 2.280321 GCCGGTGGTGTACGTGTT 60.280 61.111 1.90 0.00 0.00 3.32
1334 1444 2.600475 GCCGGTGGTGTACGTGTTG 61.600 63.158 1.90 0.00 0.00 3.33
1335 1445 1.957186 CCGGTGGTGTACGTGTTGG 60.957 63.158 0.00 0.00 0.00 3.77
1336 1446 1.227321 CGGTGGTGTACGTGTTGGT 60.227 57.895 0.00 0.00 0.00 3.67
1337 1447 0.031857 CGGTGGTGTACGTGTTGGTA 59.968 55.000 0.00 0.00 0.00 3.25
1338 1448 1.337074 CGGTGGTGTACGTGTTGGTAT 60.337 52.381 0.00 0.00 0.00 2.73
1348 1458 2.691011 ACGTGTTGGTATTGCAGGTTTT 59.309 40.909 0.00 0.00 0.00 2.43
1465 1575 1.469308 GACCTCTACCATCGCCTATCG 59.531 57.143 0.00 0.00 40.15 2.92
1556 1736 6.614160 TCATGCAAAATGATAAGTCACACAG 58.386 36.000 0.00 0.00 37.14 3.66
1567 1747 2.084610 GTCACACAGACAGCATAGCA 57.915 50.000 0.00 0.00 46.77 3.49
1568 1748 2.625737 GTCACACAGACAGCATAGCAT 58.374 47.619 0.00 0.00 46.77 3.79
1569 1749 3.785486 GTCACACAGACAGCATAGCATA 58.215 45.455 0.00 0.00 46.77 3.14
1570 1750 3.801050 GTCACACAGACAGCATAGCATAG 59.199 47.826 0.00 0.00 46.77 2.23
1571 1751 3.448660 TCACACAGACAGCATAGCATAGT 59.551 43.478 0.00 0.00 0.00 2.12
1572 1752 4.644685 TCACACAGACAGCATAGCATAGTA 59.355 41.667 0.00 0.00 0.00 1.82
1573 1753 5.302823 TCACACAGACAGCATAGCATAGTAT 59.697 40.000 0.00 0.00 0.00 2.12
1574 1754 6.490040 TCACACAGACAGCATAGCATAGTATA 59.510 38.462 0.00 0.00 0.00 1.47
1575 1755 6.805760 CACACAGACAGCATAGCATAGTATAG 59.194 42.308 0.00 0.00 0.00 1.31
1576 1756 6.491745 ACACAGACAGCATAGCATAGTATAGT 59.508 38.462 0.00 0.00 0.00 2.12
1577 1757 7.665974 ACACAGACAGCATAGCATAGTATAGTA 59.334 37.037 0.00 0.00 0.00 1.82
1578 1758 8.681806 CACAGACAGCATAGCATAGTATAGTAT 58.318 37.037 0.00 0.00 0.00 2.12
1579 1759 8.898761 ACAGACAGCATAGCATAGTATAGTATC 58.101 37.037 0.00 0.00 0.00 2.24
1580 1760 8.349245 CAGACAGCATAGCATAGTATAGTATCC 58.651 40.741 0.00 0.00 0.00 2.59
1581 1761 7.504238 AGACAGCATAGCATAGTATAGTATCCC 59.496 40.741 0.00 0.00 0.00 3.85
1582 1762 7.358263 ACAGCATAGCATAGTATAGTATCCCT 58.642 38.462 0.00 0.98 0.00 4.20
1583 1763 7.841729 ACAGCATAGCATAGTATAGTATCCCTT 59.158 37.037 0.00 0.00 0.00 3.95
1584 1764 8.700051 CAGCATAGCATAGTATAGTATCCCTTT 58.300 37.037 0.00 0.00 0.00 3.11
1585 1765 9.273137 AGCATAGCATAGTATAGTATCCCTTTT 57.727 33.333 0.00 0.00 0.00 2.27
1586 1766 9.535878 GCATAGCATAGTATAGTATCCCTTTTC 57.464 37.037 0.00 0.00 0.00 2.29
1587 1767 9.737427 CATAGCATAGTATAGTATCCCTTTTCG 57.263 37.037 0.00 0.00 0.00 3.46
1588 1768 9.696572 ATAGCATAGTATAGTATCCCTTTTCGA 57.303 33.333 0.00 0.00 0.00 3.71
1589 1769 8.418597 AGCATAGTATAGTATCCCTTTTCGAA 57.581 34.615 0.00 0.00 0.00 3.71
1590 1770 8.867097 AGCATAGTATAGTATCCCTTTTCGAAA 58.133 33.333 6.47 6.47 0.00 3.46
1591 1771 9.485206 GCATAGTATAGTATCCCTTTTCGAAAA 57.515 33.333 21.35 21.35 0.00 2.29
1620 1800 9.959749 GAAGAAGCATAGCATAGTATAGTATCC 57.040 37.037 0.00 0.00 0.00 2.59
1621 1801 8.472007 AGAAGCATAGCATAGTATAGTATCCC 57.528 38.462 0.00 0.00 0.00 3.85
1622 1802 8.285891 AGAAGCATAGCATAGTATAGTATCCCT 58.714 37.037 0.00 0.98 0.00 4.20
1623 1803 8.846423 AAGCATAGCATAGTATAGTATCCCTT 57.154 34.615 0.00 0.00 0.00 3.95
1624 1804 8.846423 AGCATAGCATAGTATAGTATCCCTTT 57.154 34.615 0.00 0.00 0.00 3.11
1625 1805 9.273137 AGCATAGCATAGTATAGTATCCCTTTT 57.727 33.333 0.00 0.00 0.00 2.27
1626 1806 9.535878 GCATAGCATAGTATAGTATCCCTTTTC 57.464 37.037 0.00 0.00 0.00 2.29
1627 1807 9.737427 CATAGCATAGTATAGTATCCCTTTTCG 57.263 37.037 0.00 0.00 0.00 3.46
1628 1808 9.696572 ATAGCATAGTATAGTATCCCTTTTCGA 57.303 33.333 0.00 0.00 0.00 3.71
1629 1809 8.418597 AGCATAGTATAGTATCCCTTTTCGAA 57.581 34.615 0.00 0.00 0.00 3.71
1630 1810 8.867097 AGCATAGTATAGTATCCCTTTTCGAAA 58.133 33.333 6.47 6.47 0.00 3.46
1631 1811 9.485206 GCATAGTATAGTATCCCTTTTCGAAAA 57.515 33.333 21.35 21.35 0.00 2.29
1655 1835 8.430801 AAAAGAAGAAGCATAGCATAGTACTG 57.569 34.615 5.39 0.00 0.00 2.74
1656 1836 6.723298 AGAAGAAGCATAGCATAGTACTGT 57.277 37.500 5.39 0.00 0.00 3.55
1657 1837 7.825331 AGAAGAAGCATAGCATAGTACTGTA 57.175 36.000 5.39 0.00 0.00 2.74
1658 1838 8.415950 AGAAGAAGCATAGCATAGTACTGTAT 57.584 34.615 5.39 0.00 0.00 2.29
1677 1858 1.821216 TTTGCTCCCGAAATGACCTC 58.179 50.000 0.00 0.00 0.00 3.85
1688 1869 0.622665 AATGACCTCTCTGCTTGGGG 59.377 55.000 0.00 0.00 0.00 4.96
1692 1873 2.045536 CTCTCTGCTTGGGGGTGC 60.046 66.667 0.00 0.00 0.00 5.01
1786 1967 2.885644 CCCTCAACGGCGACATCG 60.886 66.667 16.62 0.00 43.27 3.84
1963 2144 0.102300 TCCACAGCACCATCGATACG 59.898 55.000 0.00 0.00 0.00 3.06
1964 2145 1.490693 CCACAGCACCATCGATACGC 61.491 60.000 0.00 0.73 0.00 4.42
2224 2425 2.577593 GACGCCTACCACCACCTC 59.422 66.667 0.00 0.00 0.00 3.85
2250 2451 2.352805 CTCCCTGGACAAGGTGGC 59.647 66.667 0.00 0.00 45.78 5.01
2262 2482 0.622665 AAGGTGGCCTTCATCTCCAG 59.377 55.000 3.32 0.00 40.17 3.86
2280 2500 2.298163 CCAGCTTTGCTTGAAACTCCAT 59.702 45.455 0.00 0.00 36.40 3.41
2283 2503 3.054878 GCTTTGCTTGAAACTCCATGTG 58.945 45.455 0.00 0.00 0.00 3.21
2287 2507 2.429971 TGCTTGAAACTCCATGTGCAAA 59.570 40.909 0.00 0.00 0.00 3.68
2288 2508 3.069872 TGCTTGAAACTCCATGTGCAAAT 59.930 39.130 0.00 0.00 0.00 2.32
2289 2509 4.060205 GCTTGAAACTCCATGTGCAAATT 58.940 39.130 0.00 0.00 0.00 1.82
2290 2510 4.512571 GCTTGAAACTCCATGTGCAAATTT 59.487 37.500 0.00 0.00 0.00 1.82
2291 2511 5.333568 GCTTGAAACTCCATGTGCAAATTTC 60.334 40.000 0.00 0.00 0.00 2.17
2292 2512 5.534207 TGAAACTCCATGTGCAAATTTCT 57.466 34.783 0.00 0.00 0.00 2.52
2294 2514 5.068855 TGAAACTCCATGTGCAAATTTCTCA 59.931 36.000 0.00 0.00 0.00 3.27
2295 2515 4.778534 ACTCCATGTGCAAATTTCTCAG 57.221 40.909 0.00 0.00 0.00 3.35
2297 2517 2.231964 TCCATGTGCAAATTTCTCAGGC 59.768 45.455 0.00 0.00 0.00 4.85
2298 2518 2.232941 CCATGTGCAAATTTCTCAGGCT 59.767 45.455 0.00 0.00 0.00 4.58
2299 2519 3.306502 CCATGTGCAAATTTCTCAGGCTT 60.307 43.478 0.00 0.00 0.00 4.35
2300 2520 4.312443 CATGTGCAAATTTCTCAGGCTTT 58.688 39.130 0.00 0.00 0.00 3.51
2301 2521 3.719924 TGTGCAAATTTCTCAGGCTTTG 58.280 40.909 0.00 0.00 0.00 2.77
2308 2528 7.000575 CAAATTTCTCAGGCTTTGCAATATG 57.999 36.000 0.00 0.00 0.00 1.78
2322 2613 1.335810 CAATATGCATTGTCGCAGGCT 59.664 47.619 3.54 0.00 46.99 4.58
2343 2634 4.117661 AAGAGCGAGACGTCGGGC 62.118 66.667 21.38 21.38 46.91 6.13
2442 2733 3.267233 ATGAAGGGGCTGGGCACA 61.267 61.111 0.00 0.00 30.93 4.57
2699 3002 3.014623 TCGGTCAGTCTACCTGTGTATG 58.985 50.000 0.00 0.00 42.19 2.39
2709 3012 6.319152 AGTCTACCTGTGTATGTACATCTGTC 59.681 42.308 12.68 2.78 38.63 3.51
2750 3067 2.170187 AGAAGCCAGGACTGAATGCTAG 59.830 50.000 0.00 0.00 0.00 3.42
2759 3076 2.695666 GACTGAATGCTAGGGCTACTGA 59.304 50.000 0.00 0.00 39.59 3.41
2800 3119 7.581213 ACCAGAAATGAAATTGACAACTACA 57.419 32.000 0.00 0.00 36.10 2.74
2803 3122 8.783093 CCAGAAATGAAATTGACAACTACAGTA 58.217 33.333 0.00 0.00 36.10 2.74
2804 3123 9.599322 CAGAAATGAAATTGACAACTACAGTAC 57.401 33.333 0.00 0.00 36.10 2.73
2805 3124 8.495949 AGAAATGAAATTGACAACTACAGTACG 58.504 33.333 0.00 0.00 36.10 3.67
2806 3125 7.724305 AATGAAATTGACAACTACAGTACGT 57.276 32.000 0.00 0.00 33.44 3.57
2817 3136 9.737025 GACAACTACAGTACGTTTTATTCATTC 57.263 33.333 0.00 0.00 0.00 2.67
2833 3152 4.842531 TCATTCCTCTATGCCTCAACAA 57.157 40.909 0.00 0.00 0.00 2.83
2834 3153 4.517285 TCATTCCTCTATGCCTCAACAAC 58.483 43.478 0.00 0.00 0.00 3.32
2835 3154 4.019411 TCATTCCTCTATGCCTCAACAACA 60.019 41.667 0.00 0.00 0.00 3.33
2836 3155 3.616956 TCCTCTATGCCTCAACAACAG 57.383 47.619 0.00 0.00 0.00 3.16
2842 3161 0.535780 TGCCTCAACAACAGAGCCAG 60.536 55.000 0.00 0.00 0.00 4.85
2843 3162 0.250467 GCCTCAACAACAGAGCCAGA 60.250 55.000 0.00 0.00 0.00 3.86
2844 3163 1.517242 CCTCAACAACAGAGCCAGAC 58.483 55.000 0.00 0.00 0.00 3.51
2847 3166 1.762370 TCAACAACAGAGCCAGACAGA 59.238 47.619 0.00 0.00 0.00 3.41
2849 3168 3.144506 CAACAACAGAGCCAGACAGAAT 58.855 45.455 0.00 0.00 0.00 2.40
2851 3170 4.199432 ACAACAGAGCCAGACAGAATAG 57.801 45.455 0.00 0.00 0.00 1.73
2854 3173 2.836981 ACAGAGCCAGACAGAATAGCTT 59.163 45.455 0.00 0.00 32.97 3.74
2869 3188 7.040478 ACAGAATAGCTTCATTTACAGCACAAA 60.040 33.333 0.00 0.00 38.61 2.83
2891 3210 2.509336 CAACCTAGCCCGCACTCG 60.509 66.667 0.00 0.00 0.00 4.18
2892 3211 4.452733 AACCTAGCCCGCACTCGC 62.453 66.667 0.00 0.00 0.00 5.03
2895 3214 4.451150 CTAGCCCGCACTCGCCAA 62.451 66.667 0.00 0.00 33.11 4.52
2932 3251 9.998106 ATTATTGCCTTATTCGTTACTATGAGT 57.002 29.630 0.00 0.00 0.00 3.41
2936 3255 9.903682 TTGCCTTATTCGTTACTATGAGTATAC 57.096 33.333 0.00 0.00 29.64 1.47
2965 3284 1.971695 GGTGCCGAAAGTTCAGGGG 60.972 63.158 0.00 0.00 0.00 4.79
2968 3287 2.345991 CCGAAAGTTCAGGGGCGA 59.654 61.111 0.00 0.00 0.00 5.54
2969 3288 1.741770 CCGAAAGTTCAGGGGCGAG 60.742 63.158 0.00 0.00 0.00 5.03
2970 3289 1.004918 CGAAAGTTCAGGGGCGAGT 60.005 57.895 0.00 0.00 0.00 4.18
2973 3292 1.705997 AAAGTTCAGGGGCGAGTGGT 61.706 55.000 0.00 0.00 0.00 4.16
2975 3294 3.636231 TTCAGGGGCGAGTGGTGG 61.636 66.667 0.00 0.00 0.00 4.61
2984 3303 0.457337 GCGAGTGGTGGTACCTTACG 60.457 60.000 14.36 10.97 39.58 3.18
2988 3307 2.493278 GAGTGGTGGTACCTTACGCTAA 59.507 50.000 14.36 0.00 39.58 3.09
3038 3372 8.568794 CATGTCCTCTACTCGAAATAAGTGATA 58.431 37.037 0.00 0.00 0.00 2.15
3064 3398 2.176792 GCACGCTTTAGGCAGCAC 59.823 61.111 0.00 0.00 40.09 4.40
3116 3450 0.921347 GCAAGACGACGCGATAACAT 59.079 50.000 15.93 0.00 0.00 2.71
3121 3455 2.610833 AGACGACGCGATAACATACAGA 59.389 45.455 15.93 0.00 0.00 3.41
3125 3459 3.309388 GACGCGATAACATACAGAGCAT 58.691 45.455 15.93 0.00 0.00 3.79
3128 3462 3.120889 CGCGATAACATACAGAGCATTGG 60.121 47.826 0.00 0.00 0.00 3.16
3129 3463 3.187227 GCGATAACATACAGAGCATTGGG 59.813 47.826 0.00 0.00 0.00 4.12
3139 3473 1.106285 GAGCATTGGGGCTAAACCAG 58.894 55.000 0.00 0.00 45.99 4.00
3165 3499 3.690460 TGCTATCTCAGTCAGTCTGTGA 58.310 45.455 0.00 2.53 46.18 3.58
3185 3519 3.612247 CTTCTGCCCCACACTCCGG 62.612 68.421 0.00 0.00 0.00 5.14
3300 3634 1.492176 AGAATCCGATCCAACCTGCAT 59.508 47.619 0.00 0.00 0.00 3.96
3373 3709 5.065218 ACGTGAAAGTTGCATTGGAGATATC 59.935 40.000 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 0.880441 TGCTTGTGCGTGCATGTAAT 59.120 45.000 7.93 0.00 43.34 1.89
72 74 1.068748 CCTGTAGCTTGCTTGCTTGTG 60.069 52.381 9.11 1.43 43.74 3.33
196 216 1.153823 CCCGTGCTTCGTCCTGTAG 60.154 63.158 1.89 0.00 37.94 2.74
229 249 1.299620 CCCGTCCGCGAACGATATT 60.300 57.895 22.56 0.00 45.37 1.28
250 270 0.593618 TGTCGATGCTCTAGATCGCC 59.406 55.000 8.97 0.00 42.01 5.54
385 417 2.762887 CTGGGATTGCTGACTCTGACTA 59.237 50.000 0.00 0.00 0.00 2.59
411 443 2.161855 GATTTGGTGACATGGCACTGA 58.838 47.619 30.13 16.57 42.32 3.41
496 529 9.605275 GTTAATAAACCCTTACGTCTAAATCCT 57.395 33.333 0.00 0.00 0.00 3.24
520 553 3.784701 ATGATTGTAGAGCTCGACGTT 57.215 42.857 20.15 11.09 0.00 3.99
521 554 3.251245 CCTATGATTGTAGAGCTCGACGT 59.749 47.826 20.15 12.41 0.00 4.34
565 598 2.239439 TGGAGGTCGAGGAGGAGGT 61.239 63.158 0.00 0.00 0.00 3.85
566 599 1.755008 GTGGAGGTCGAGGAGGAGG 60.755 68.421 0.00 0.00 0.00 4.30
567 600 1.755008 GGTGGAGGTCGAGGAGGAG 60.755 68.421 0.00 0.00 0.00 3.69
568 601 2.359404 GGTGGAGGTCGAGGAGGA 59.641 66.667 0.00 0.00 0.00 3.71
569 602 2.037367 TGGTGGAGGTCGAGGAGG 59.963 66.667 0.00 0.00 0.00 4.30
570 603 2.352032 GGTGGTGGAGGTCGAGGAG 61.352 68.421 0.00 0.00 0.00 3.69
571 604 2.283676 GGTGGTGGAGGTCGAGGA 60.284 66.667 0.00 0.00 0.00 3.71
572 605 3.760035 CGGTGGTGGAGGTCGAGG 61.760 72.222 0.00 0.00 0.00 4.63
573 606 4.436998 GCGGTGGTGGAGGTCGAG 62.437 72.222 0.00 0.00 0.00 4.04
576 609 4.083862 GAGGCGGTGGTGGAGGTC 62.084 72.222 0.00 0.00 0.00 3.85
579 612 4.394712 GTGGAGGCGGTGGTGGAG 62.395 72.222 0.00 0.00 0.00 3.86
584 617 4.530857 GATCGGTGGAGGCGGTGG 62.531 72.222 0.00 0.00 0.00 4.61
585 618 2.076622 CTAGATCGGTGGAGGCGGTG 62.077 65.000 0.00 0.00 0.00 4.94
586 619 1.828660 CTAGATCGGTGGAGGCGGT 60.829 63.158 0.00 0.00 0.00 5.68
587 620 3.043419 CTAGATCGGTGGAGGCGG 58.957 66.667 0.00 0.00 0.00 6.13
588 621 2.136196 GAGCTAGATCGGTGGAGGCG 62.136 65.000 0.00 0.00 0.00 5.52
589 622 1.663173 GAGCTAGATCGGTGGAGGC 59.337 63.158 0.00 0.00 0.00 4.70
590 623 0.820074 ACGAGCTAGATCGGTGGAGG 60.820 60.000 31.44 5.36 46.91 4.30
591 624 0.309302 CACGAGCTAGATCGGTGGAG 59.691 60.000 31.44 13.55 46.91 3.86
592 625 0.393944 ACACGAGCTAGATCGGTGGA 60.394 55.000 31.44 0.00 46.91 4.02
593 626 1.002684 GTACACGAGCTAGATCGGTGG 60.003 57.143 31.44 22.32 46.91 4.61
594 627 1.002684 GGTACACGAGCTAGATCGGTG 60.003 57.143 31.44 26.28 46.91 4.94
595 628 1.134159 AGGTACACGAGCTAGATCGGT 60.134 52.381 31.44 26.08 46.91 4.69
596 629 1.532007 GAGGTACACGAGCTAGATCGG 59.468 57.143 31.44 22.37 46.91 4.18
598 631 2.809696 GGAGAGGTACACGAGCTAGATC 59.190 54.545 0.00 0.00 35.50 2.75
599 632 2.440253 AGGAGAGGTACACGAGCTAGAT 59.560 50.000 0.00 0.00 35.50 1.98
600 633 1.838715 AGGAGAGGTACACGAGCTAGA 59.161 52.381 0.00 0.00 35.50 2.43
601 634 2.335316 AGGAGAGGTACACGAGCTAG 57.665 55.000 0.00 0.00 35.50 3.42
602 635 2.239150 AGAAGGAGAGGTACACGAGCTA 59.761 50.000 0.00 0.00 35.50 3.32
603 636 1.004979 AGAAGGAGAGGTACACGAGCT 59.995 52.381 0.00 0.00 39.10 4.09
604 637 1.402613 GAGAAGGAGAGGTACACGAGC 59.597 57.143 0.00 0.00 0.00 5.03
605 638 2.018515 GGAGAAGGAGAGGTACACGAG 58.981 57.143 0.00 0.00 0.00 4.18
606 639 1.634459 AGGAGAAGGAGAGGTACACGA 59.366 52.381 0.00 0.00 0.00 4.35
607 640 2.018515 GAGGAGAAGGAGAGGTACACG 58.981 57.143 0.00 0.00 0.00 4.49
608 641 2.024751 AGGAGGAGAAGGAGAGGTACAC 60.025 54.545 0.00 0.00 0.00 2.90
609 642 2.289467 AGGAGGAGAAGGAGAGGTACA 58.711 52.381 0.00 0.00 0.00 2.90
610 643 3.391799 AAGGAGGAGAAGGAGAGGTAC 57.608 52.381 0.00 0.00 0.00 3.34
611 644 4.046103 AGAAAAGGAGGAGAAGGAGAGGTA 59.954 45.833 0.00 0.00 0.00 3.08
612 645 3.178046 GAAAAGGAGGAGAAGGAGAGGT 58.822 50.000 0.00 0.00 0.00 3.85
613 646 3.449918 AGAAAAGGAGGAGAAGGAGAGG 58.550 50.000 0.00 0.00 0.00 3.69
614 647 5.221823 ACAAAGAAAAGGAGGAGAAGGAGAG 60.222 44.000 0.00 0.00 0.00 3.20
615 648 4.660771 ACAAAGAAAAGGAGGAGAAGGAGA 59.339 41.667 0.00 0.00 0.00 3.71
616 649 4.979335 ACAAAGAAAAGGAGGAGAAGGAG 58.021 43.478 0.00 0.00 0.00 3.69
617 650 4.503296 CGACAAAGAAAAGGAGGAGAAGGA 60.503 45.833 0.00 0.00 0.00 3.36
618 651 3.748568 CGACAAAGAAAAGGAGGAGAAGG 59.251 47.826 0.00 0.00 0.00 3.46
619 652 3.187432 GCGACAAAGAAAAGGAGGAGAAG 59.813 47.826 0.00 0.00 0.00 2.85
620 653 3.139077 GCGACAAAGAAAAGGAGGAGAA 58.861 45.455 0.00 0.00 0.00 2.87
621 654 2.550208 GGCGACAAAGAAAAGGAGGAGA 60.550 50.000 0.00 0.00 0.00 3.71
622 655 1.807142 GGCGACAAAGAAAAGGAGGAG 59.193 52.381 0.00 0.00 0.00 3.69
623 656 1.876416 CGGCGACAAAGAAAAGGAGGA 60.876 52.381 0.00 0.00 0.00 3.71
624 657 0.517316 CGGCGACAAAGAAAAGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
625 658 0.110192 GCGGCGACAAAGAAAAGGAG 60.110 55.000 12.98 0.00 0.00 3.69
626 659 1.512156 GGCGGCGACAAAGAAAAGGA 61.512 55.000 12.98 0.00 0.00 3.36
627 660 1.081442 GGCGGCGACAAAGAAAAGG 60.081 57.895 12.98 0.00 0.00 3.11
628 661 0.660300 GTGGCGGCGACAAAGAAAAG 60.660 55.000 21.17 0.00 0.00 2.27
629 662 1.098712 AGTGGCGGCGACAAAGAAAA 61.099 50.000 21.17 0.00 0.00 2.29
630 663 0.249953 TAGTGGCGGCGACAAAGAAA 60.250 50.000 21.17 0.00 0.00 2.52
631 664 0.947180 GTAGTGGCGGCGACAAAGAA 60.947 55.000 21.17 0.00 0.00 2.52
632 665 1.373748 GTAGTGGCGGCGACAAAGA 60.374 57.895 21.17 1.69 0.00 2.52
633 666 1.626654 CTGTAGTGGCGGCGACAAAG 61.627 60.000 21.17 9.51 0.00 2.77
634 667 1.666553 CTGTAGTGGCGGCGACAAA 60.667 57.895 21.17 5.81 0.00 2.83
635 668 2.048597 CTGTAGTGGCGGCGACAA 60.049 61.111 21.17 0.00 0.00 3.18
636 669 4.735132 GCTGTAGTGGCGGCGACA 62.735 66.667 13.60 13.60 0.00 4.35
659 692 4.200283 GGAGGAGAGGTGCGCGAG 62.200 72.222 12.10 0.00 0.00 5.03
660 693 4.742649 AGGAGGAGAGGTGCGCGA 62.743 66.667 12.10 0.00 0.00 5.87
661 694 4.200283 GAGGAGGAGAGGTGCGCG 62.200 72.222 0.00 0.00 0.00 6.86
662 695 2.912987 TAGGAGGAGGAGAGGTGCGC 62.913 65.000 0.00 0.00 0.00 6.09
663 696 0.821711 CTAGGAGGAGGAGAGGTGCG 60.822 65.000 0.00 0.00 0.00 5.34
664 697 0.553819 TCTAGGAGGAGGAGAGGTGC 59.446 60.000 0.00 0.00 0.00 5.01
665 698 1.566703 TGTCTAGGAGGAGGAGAGGTG 59.433 57.143 0.00 0.00 0.00 4.00
666 699 1.988539 TGTCTAGGAGGAGGAGAGGT 58.011 55.000 0.00 0.00 0.00 3.85
667 700 3.496331 GAATGTCTAGGAGGAGGAGAGG 58.504 54.545 0.00 0.00 0.00 3.69
668 701 3.146066 CGAATGTCTAGGAGGAGGAGAG 58.854 54.545 0.00 0.00 0.00 3.20
669 702 2.510382 ACGAATGTCTAGGAGGAGGAGA 59.490 50.000 0.00 0.00 0.00 3.71
670 703 2.882137 GACGAATGTCTAGGAGGAGGAG 59.118 54.545 0.00 0.00 42.08 3.69
671 704 2.745482 CGACGAATGTCTAGGAGGAGGA 60.745 54.545 0.00 0.00 43.21 3.71
672 705 1.604755 CGACGAATGTCTAGGAGGAGG 59.395 57.143 0.00 0.00 43.21 4.30
673 706 1.002251 GCGACGAATGTCTAGGAGGAG 60.002 57.143 0.00 0.00 43.21 3.69
674 707 1.022735 GCGACGAATGTCTAGGAGGA 58.977 55.000 0.00 0.00 43.21 3.71
675 708 0.030908 GGCGACGAATGTCTAGGAGG 59.969 60.000 0.00 0.00 43.21 4.30
676 709 0.738975 TGGCGACGAATGTCTAGGAG 59.261 55.000 0.00 0.00 43.21 3.69
677 710 0.454600 GTGGCGACGAATGTCTAGGA 59.545 55.000 0.00 0.00 43.21 2.94
678 711 0.527817 GGTGGCGACGAATGTCTAGG 60.528 60.000 0.00 0.00 43.21 3.02
679 712 0.456221 AGGTGGCGACGAATGTCTAG 59.544 55.000 0.00 0.00 43.21 2.43
680 713 0.454600 GAGGTGGCGACGAATGTCTA 59.545 55.000 0.00 0.00 43.21 2.59
681 714 1.215647 GAGGTGGCGACGAATGTCT 59.784 57.895 0.00 0.00 43.21 3.41
682 715 1.810030 GGAGGTGGCGACGAATGTC 60.810 63.158 0.00 0.00 41.91 3.06
683 716 2.264794 GGAGGTGGCGACGAATGT 59.735 61.111 0.00 0.00 0.00 2.71
684 717 2.100631 GTGGAGGTGGCGACGAATG 61.101 63.158 0.00 0.00 0.00 2.67
685 718 2.264794 GTGGAGGTGGCGACGAAT 59.735 61.111 0.00 0.00 0.00 3.34
686 719 3.998672 GGTGGAGGTGGCGACGAA 61.999 66.667 0.00 0.00 0.00 3.85
689 722 4.699522 GTGGGTGGAGGTGGCGAC 62.700 72.222 0.00 0.00 0.00 5.19
711 744 4.200283 GTGCTCCGAGGCTCCGAG 62.200 72.222 23.26 23.26 0.00 4.63
714 747 3.474570 ATGGTGCTCCGAGGCTCC 61.475 66.667 9.32 11.73 43.63 4.70
715 748 2.202987 CATGGTGCTCCGAGGCTC 60.203 66.667 3.87 3.87 36.30 4.70
716 749 2.685017 TCATGGTGCTCCGAGGCT 60.685 61.111 0.00 0.00 36.30 4.58
717 750 2.512515 GTCATGGTGCTCCGAGGC 60.513 66.667 0.00 0.00 36.30 4.70
718 751 2.187946 GGTCATGGTGCTCCGAGG 59.812 66.667 0.00 0.00 36.30 4.63
719 752 2.187946 GGGTCATGGTGCTCCGAG 59.812 66.667 0.00 0.00 36.30 4.63
720 753 3.399181 GGGGTCATGGTGCTCCGA 61.399 66.667 0.00 0.00 36.30 4.55
721 754 4.489771 GGGGGTCATGGTGCTCCG 62.490 72.222 0.00 0.00 36.30 4.63
722 755 3.338250 TGGGGGTCATGGTGCTCC 61.338 66.667 0.00 0.00 0.00 4.70
723 756 2.044946 GTGGGGGTCATGGTGCTC 60.045 66.667 0.00 0.00 0.00 4.26
724 757 3.661648 GGTGGGGGTCATGGTGCT 61.662 66.667 0.00 0.00 0.00 4.40
725 758 4.759205 GGGTGGGGGTCATGGTGC 62.759 72.222 0.00 0.00 0.00 5.01
726 759 4.060667 GGGGTGGGGGTCATGGTG 62.061 72.222 0.00 0.00 0.00 4.17
743 776 3.853330 CAGACCAATGCGACGGCG 61.853 66.667 6.12 6.12 44.10 6.46
744 777 2.740714 GACAGACCAATGCGACGGC 61.741 63.158 0.00 0.00 40.52 5.68
745 778 2.444624 CGACAGACCAATGCGACGG 61.445 63.158 0.00 0.00 0.00 4.79
746 779 1.674611 GACGACAGACCAATGCGACG 61.675 60.000 0.00 0.00 0.00 5.12
747 780 0.666274 TGACGACAGACCAATGCGAC 60.666 55.000 0.00 0.00 0.00 5.19
748 781 0.246360 ATGACGACAGACCAATGCGA 59.754 50.000 0.00 0.00 0.00 5.10
749 782 0.371301 CATGACGACAGACCAATGCG 59.629 55.000 0.00 0.00 0.00 4.73
750 783 0.097674 GCATGACGACAGACCAATGC 59.902 55.000 0.00 0.00 0.00 3.56
751 784 1.441738 TGCATGACGACAGACCAATG 58.558 50.000 0.00 0.00 0.00 2.82
752 785 2.183478 TTGCATGACGACAGACCAAT 57.817 45.000 0.00 0.00 0.00 3.16
753 786 1.960417 TTTGCATGACGACAGACCAA 58.040 45.000 0.00 0.00 0.00 3.67
754 787 1.960417 TTTTGCATGACGACAGACCA 58.040 45.000 0.00 0.00 0.00 4.02
755 788 2.483877 TGATTTTGCATGACGACAGACC 59.516 45.455 0.00 0.00 0.00 3.85
756 789 3.811722 TGATTTTGCATGACGACAGAC 57.188 42.857 0.00 0.00 0.00 3.51
757 790 4.275689 ACTTTGATTTTGCATGACGACAGA 59.724 37.500 0.00 0.00 0.00 3.41
758 791 4.539870 ACTTTGATTTTGCATGACGACAG 58.460 39.130 0.00 0.00 0.00 3.51
759 792 4.275689 AGACTTTGATTTTGCATGACGACA 59.724 37.500 0.00 0.00 0.00 4.35
760 793 4.787598 AGACTTTGATTTTGCATGACGAC 58.212 39.130 0.00 0.00 0.00 4.34
761 794 4.514816 TGAGACTTTGATTTTGCATGACGA 59.485 37.500 0.00 0.00 0.00 4.20
762 795 4.786507 TGAGACTTTGATTTTGCATGACG 58.213 39.130 0.00 0.00 0.00 4.35
763 796 5.766222 ACTGAGACTTTGATTTTGCATGAC 58.234 37.500 0.00 0.00 0.00 3.06
764 797 5.334337 CGACTGAGACTTTGATTTTGCATGA 60.334 40.000 0.00 0.00 0.00 3.07
765 798 4.849926 CGACTGAGACTTTGATTTTGCATG 59.150 41.667 0.00 0.00 0.00 4.06
766 799 4.756642 TCGACTGAGACTTTGATTTTGCAT 59.243 37.500 0.00 0.00 0.00 3.96
767 800 4.126437 TCGACTGAGACTTTGATTTTGCA 58.874 39.130 0.00 0.00 0.00 4.08
768 801 4.732285 TCGACTGAGACTTTGATTTTGC 57.268 40.909 0.00 0.00 0.00 3.68
769 802 6.891624 TCAATCGACTGAGACTTTGATTTTG 58.108 36.000 0.00 0.00 0.00 2.44
770 803 6.931281 TCTCAATCGACTGAGACTTTGATTTT 59.069 34.615 21.83 0.00 45.45 1.82
771 804 6.459066 TCTCAATCGACTGAGACTTTGATTT 58.541 36.000 21.83 0.00 45.45 2.17
772 805 6.030548 TCTCAATCGACTGAGACTTTGATT 57.969 37.500 21.83 0.00 45.45 2.57
773 806 5.651387 TCTCAATCGACTGAGACTTTGAT 57.349 39.130 21.83 0.00 45.45 2.57
781 814 4.362932 TGCTAAGTCTCAATCGACTGAG 57.637 45.455 17.55 17.55 43.14 3.35
782 815 4.783764 TTGCTAAGTCTCAATCGACTGA 57.216 40.909 0.00 0.00 43.14 3.41
783 816 5.406780 AGTTTTGCTAAGTCTCAATCGACTG 59.593 40.000 0.00 0.00 43.14 3.51
784 817 5.406780 CAGTTTTGCTAAGTCTCAATCGACT 59.593 40.000 0.00 0.00 45.73 4.18
785 818 5.177696 ACAGTTTTGCTAAGTCTCAATCGAC 59.822 40.000 0.00 0.00 0.00 4.20
786 819 5.297547 ACAGTTTTGCTAAGTCTCAATCGA 58.702 37.500 0.00 0.00 0.00 3.59
787 820 5.177511 TGACAGTTTTGCTAAGTCTCAATCG 59.822 40.000 0.00 0.00 0.00 3.34
788 821 6.545504 TGACAGTTTTGCTAAGTCTCAATC 57.454 37.500 0.00 0.00 0.00 2.67
789 822 8.621532 TTATGACAGTTTTGCTAAGTCTCAAT 57.378 30.769 0.00 0.00 0.00 2.57
790 823 8.445275 TTTATGACAGTTTTGCTAAGTCTCAA 57.555 30.769 0.00 0.00 0.00 3.02
791 824 8.621532 ATTTATGACAGTTTTGCTAAGTCTCA 57.378 30.769 0.00 0.00 0.00 3.27
796 829 9.065871 GCACTAATTTATGACAGTTTTGCTAAG 57.934 33.333 0.00 0.00 0.00 2.18
797 830 8.026607 GGCACTAATTTATGACAGTTTTGCTAA 58.973 33.333 0.00 0.00 0.00 3.09
798 831 7.362574 GGGCACTAATTTATGACAGTTTTGCTA 60.363 37.037 0.00 0.00 0.00 3.49
799 832 6.389906 GGCACTAATTTATGACAGTTTTGCT 58.610 36.000 0.00 0.00 0.00 3.91
800 833 5.576774 GGGCACTAATTTATGACAGTTTTGC 59.423 40.000 0.00 0.00 0.00 3.68
801 834 6.686630 TGGGCACTAATTTATGACAGTTTTG 58.313 36.000 0.00 0.00 0.00 2.44
802 835 6.493458 ACTGGGCACTAATTTATGACAGTTTT 59.507 34.615 10.76 0.00 34.14 2.43
803 836 6.010219 ACTGGGCACTAATTTATGACAGTTT 58.990 36.000 10.76 0.00 34.14 2.66
804 837 5.415701 CACTGGGCACTAATTTATGACAGTT 59.584 40.000 12.56 2.73 35.03 3.16
805 838 4.943705 CACTGGGCACTAATTTATGACAGT 59.056 41.667 10.76 10.76 36.57 3.55
806 839 4.943705 ACACTGGGCACTAATTTATGACAG 59.056 41.667 0.00 0.00 0.00 3.51
807 840 4.699735 CACACTGGGCACTAATTTATGACA 59.300 41.667 0.00 0.00 0.00 3.58
808 841 4.941263 TCACACTGGGCACTAATTTATGAC 59.059 41.667 0.00 0.00 0.00 3.06
809 842 5.172687 TCACACTGGGCACTAATTTATGA 57.827 39.130 0.00 0.00 0.00 2.15
810 843 4.336433 CCTCACACTGGGCACTAATTTATG 59.664 45.833 0.00 0.00 0.00 1.90
825 858 2.421739 GTCACGCCACCTCACACT 59.578 61.111 0.00 0.00 0.00 3.55
862 895 6.766429 ACGTAATACCCTTGAGTTTCTTCTT 58.234 36.000 0.00 0.00 0.00 2.52
879 912 8.073768 GCCGGTAATTTGTAGTACTACGTAATA 58.926 37.037 24.36 13.96 38.85 0.98
888 921 2.159114 TCCGGCCGGTAATTTGTAGTAC 60.159 50.000 41.57 0.00 36.47 2.73
889 922 2.101249 CTCCGGCCGGTAATTTGTAGTA 59.899 50.000 41.57 18.49 36.47 1.82
890 923 0.903942 TCCGGCCGGTAATTTGTAGT 59.096 50.000 41.57 0.00 36.47 2.73
891 924 1.134610 ACTCCGGCCGGTAATTTGTAG 60.135 52.381 41.57 30.11 36.47 2.74
892 925 0.903942 ACTCCGGCCGGTAATTTGTA 59.096 50.000 41.57 20.61 36.47 2.41
893 926 0.903942 TACTCCGGCCGGTAATTTGT 59.096 50.000 41.57 29.15 36.47 2.83
904 937 0.109226 GGCGTATCAGATACTCCGGC 60.109 60.000 16.96 12.78 31.67 6.13
906 939 1.880675 AGTGGCGTATCAGATACTCCG 59.119 52.381 20.20 9.16 42.21 4.63
1132 1174 1.640593 TTGGAGGTGCCTGTGACCAA 61.641 55.000 0.00 0.17 35.76 3.67
1133 1175 2.055689 CTTGGAGGTGCCTGTGACCA 62.056 60.000 0.00 0.00 35.76 4.02
1134 1176 1.302832 CTTGGAGGTGCCTGTGACC 60.303 63.158 0.00 0.00 37.63 4.02
1135 1177 0.603975 GACTTGGAGGTGCCTGTGAC 60.604 60.000 0.00 0.00 37.63 3.67
1146 1200 0.954452 GCCTGTGTTTGGACTTGGAG 59.046 55.000 0.00 0.00 0.00 3.86
1147 1201 0.817634 CGCCTGTGTTTGGACTTGGA 60.818 55.000 0.00 0.00 0.00 3.53
1148 1202 0.817634 TCGCCTGTGTTTGGACTTGG 60.818 55.000 0.00 0.00 0.00 3.61
1151 1205 0.468226 TCTTCGCCTGTGTTTGGACT 59.532 50.000 0.00 0.00 0.00 3.85
1152 1206 1.305201 TTCTTCGCCTGTGTTTGGAC 58.695 50.000 0.00 0.00 0.00 4.02
1156 1220 0.598065 GCCATTCTTCGCCTGTGTTT 59.402 50.000 0.00 0.00 0.00 2.83
1169 1233 3.267860 CGCTCAGGCTCGCCATTC 61.268 66.667 11.02 0.00 38.92 2.67
1170 1234 4.087892 ACGCTCAGGCTCGCCATT 62.088 61.111 11.02 0.00 38.92 3.16
1249 1327 4.694339 AGAGTCCTCCATTATTTGTACGC 58.306 43.478 0.00 0.00 0.00 4.42
1252 1330 9.396022 GATGAAAAGAGTCCTCCATTATTTGTA 57.604 33.333 0.00 0.00 0.00 2.41
1258 1345 5.630069 GCAGGATGAAAAGAGTCCTCCATTA 60.630 44.000 0.00 0.00 40.31 1.90
1259 1346 4.853007 CAGGATGAAAAGAGTCCTCCATT 58.147 43.478 0.00 0.00 40.31 3.16
1263 1350 2.637947 GGCAGGATGAAAAGAGTCCTC 58.362 52.381 0.00 0.00 40.31 3.71
1265 1352 1.004745 TGGGCAGGATGAAAAGAGTCC 59.995 52.381 0.00 0.00 39.69 3.85
1266 1353 2.363683 CTGGGCAGGATGAAAAGAGTC 58.636 52.381 0.00 0.00 39.69 3.36
1282 1392 3.085208 AGCACATATCGTTGCTGGG 57.915 52.632 2.81 0.00 36.15 4.45
1294 1404 2.047274 AGCCGTTACGCAGCACAT 60.047 55.556 8.50 0.00 0.00 3.21
1295 1405 3.041351 CAGCCGTTACGCAGCACA 61.041 61.111 8.50 0.00 0.00 4.57
1296 1406 2.736995 TCAGCCGTTACGCAGCAC 60.737 61.111 8.50 0.00 0.00 4.40
1299 1409 3.179265 CCGTCAGCCGTTACGCAG 61.179 66.667 0.00 0.00 37.78 5.18
1310 1420 3.687102 TACACCACCGGCCGTCAG 61.687 66.667 26.12 14.22 0.00 3.51
1327 1437 1.975660 AACCTGCAATACCAACACGT 58.024 45.000 0.00 0.00 0.00 4.49
1329 1439 3.389221 CCAAAACCTGCAATACCAACAC 58.611 45.455 0.00 0.00 0.00 3.32
1333 1443 1.967066 CACCCAAAACCTGCAATACCA 59.033 47.619 0.00 0.00 0.00 3.25
1334 1444 1.337728 GCACCCAAAACCTGCAATACC 60.338 52.381 0.00 0.00 0.00 2.73
1335 1445 1.668628 CGCACCCAAAACCTGCAATAC 60.669 52.381 0.00 0.00 0.00 1.89
1336 1446 0.600557 CGCACCCAAAACCTGCAATA 59.399 50.000 0.00 0.00 0.00 1.90
1337 1447 1.112315 TCGCACCCAAAACCTGCAAT 61.112 50.000 0.00 0.00 0.00 3.56
1338 1448 1.754621 TCGCACCCAAAACCTGCAA 60.755 52.632 0.00 0.00 0.00 4.08
1407 1517 1.139654 TGTACTCCTGCATGATGAGCC 59.860 52.381 0.00 0.00 0.00 4.70
1465 1575 3.760035 TTCCCGCTGAGCTCGGTC 61.760 66.667 23.36 14.41 45.09 4.79
1523 1669 9.256477 ACTTATCATTTTGCATGATATTTGCTG 57.744 29.630 8.86 3.77 39.77 4.41
1556 1736 7.504238 AGGGATACTATACTATGCTATGCTGTC 59.496 40.741 0.00 0.00 0.00 3.51
1560 1740 9.535878 GAAAAGGGATACTATACTATGCTATGC 57.464 37.037 0.00 0.00 0.00 3.14
1561 1741 9.737427 CGAAAAGGGATACTATACTATGCTATG 57.263 37.037 0.00 0.00 0.00 2.23
1562 1742 9.696572 TCGAAAAGGGATACTATACTATGCTAT 57.303 33.333 0.00 0.00 0.00 2.97
1563 1743 9.524496 TTCGAAAAGGGATACTATACTATGCTA 57.476 33.333 0.00 0.00 0.00 3.49
1564 1744 8.418597 TTCGAAAAGGGATACTATACTATGCT 57.581 34.615 0.00 0.00 0.00 3.79
1565 1745 9.485206 TTTTCGAAAAGGGATACTATACTATGC 57.515 33.333 19.08 0.00 0.00 3.14
1594 1774 9.959749 GGATACTATACTATGCTATGCTTCTTC 57.040 37.037 0.00 0.00 0.00 2.87
1595 1775 8.919145 GGGATACTATACTATGCTATGCTTCTT 58.081 37.037 0.00 0.00 0.00 2.52
1596 1776 8.285891 AGGGATACTATACTATGCTATGCTTCT 58.714 37.037 0.00 0.00 0.00 2.85
1597 1777 8.472007 AGGGATACTATACTATGCTATGCTTC 57.528 38.462 0.00 0.00 0.00 3.86
1598 1778 8.846423 AAGGGATACTATACTATGCTATGCTT 57.154 34.615 0.00 0.00 0.00 3.91
1629 1809 8.887717 CAGTACTATGCTATGCTTCTTCTTTTT 58.112 33.333 0.00 0.00 0.00 1.94
1630 1810 8.043710 ACAGTACTATGCTATGCTTCTTCTTTT 58.956 33.333 0.00 0.00 0.00 2.27
1631 1811 7.560368 ACAGTACTATGCTATGCTTCTTCTTT 58.440 34.615 0.00 0.00 0.00 2.52
1632 1812 7.118496 ACAGTACTATGCTATGCTTCTTCTT 57.882 36.000 0.00 0.00 0.00 2.52
1633 1813 6.723298 ACAGTACTATGCTATGCTTCTTCT 57.277 37.500 0.00 0.00 0.00 2.85
1634 1814 9.482627 AAATACAGTACTATGCTATGCTTCTTC 57.517 33.333 0.00 0.00 0.00 2.87
1635 1815 9.265901 CAAATACAGTACTATGCTATGCTTCTT 57.734 33.333 0.00 0.00 0.00 2.52
1636 1816 7.386299 GCAAATACAGTACTATGCTATGCTTCT 59.614 37.037 0.00 0.00 0.00 2.85
1637 1817 7.386299 AGCAAATACAGTACTATGCTATGCTTC 59.614 37.037 12.63 0.00 41.92 3.86
1638 1818 7.220030 AGCAAATACAGTACTATGCTATGCTT 58.780 34.615 12.63 3.03 41.92 3.91
1639 1819 6.763355 AGCAAATACAGTACTATGCTATGCT 58.237 36.000 12.63 13.36 41.92 3.79
1640 1820 6.091441 GGAGCAAATACAGTACTATGCTATGC 59.909 42.308 13.75 12.33 43.59 3.14
1641 1821 6.591834 GGGAGCAAATACAGTACTATGCTATG 59.408 42.308 13.75 4.94 43.59 2.23
1642 1822 6.572509 CGGGAGCAAATACAGTACTATGCTAT 60.573 42.308 13.75 0.00 43.59 2.97
1643 1823 5.278808 CGGGAGCAAATACAGTACTATGCTA 60.279 44.000 13.75 0.00 43.59 3.49
1644 1824 4.501571 CGGGAGCAAATACAGTACTATGCT 60.502 45.833 13.69 13.69 45.98 3.79
1645 1825 3.741344 CGGGAGCAAATACAGTACTATGC 59.259 47.826 0.00 2.00 0.00 3.14
1646 1826 5.196341 TCGGGAGCAAATACAGTACTATG 57.804 43.478 0.00 0.00 0.00 2.23
1647 1827 5.864418 TTCGGGAGCAAATACAGTACTAT 57.136 39.130 0.00 0.00 0.00 2.12
1648 1828 5.664294 TTTCGGGAGCAAATACAGTACTA 57.336 39.130 0.00 0.00 0.00 1.82
1649 1829 4.546829 TTTCGGGAGCAAATACAGTACT 57.453 40.909 0.00 0.00 0.00 2.73
1650 1830 4.873827 TCATTTCGGGAGCAAATACAGTAC 59.126 41.667 0.00 0.00 0.00 2.73
1651 1831 4.873827 GTCATTTCGGGAGCAAATACAGTA 59.126 41.667 0.00 0.00 0.00 2.74
1652 1832 3.689649 GTCATTTCGGGAGCAAATACAGT 59.310 43.478 0.00 0.00 0.00 3.55
1653 1833 3.065371 GGTCATTTCGGGAGCAAATACAG 59.935 47.826 0.00 0.00 33.16 2.74
1654 1834 3.013921 GGTCATTTCGGGAGCAAATACA 58.986 45.455 0.00 0.00 33.16 2.29
1655 1835 3.279434 AGGTCATTTCGGGAGCAAATAC 58.721 45.455 0.00 0.00 35.30 1.89
1656 1836 3.199946 AGAGGTCATTTCGGGAGCAAATA 59.800 43.478 0.00 0.00 35.30 1.40
1657 1837 2.025887 AGAGGTCATTTCGGGAGCAAAT 60.026 45.455 0.00 0.00 35.30 2.32
1658 1838 1.351017 AGAGGTCATTTCGGGAGCAAA 59.649 47.619 0.00 0.00 35.30 3.68
1688 1869 3.670377 GCACAAGGAACCGGCACC 61.670 66.667 0.00 5.17 0.00 5.01
1692 1873 1.237285 CCTTCTGCACAAGGAACCGG 61.237 60.000 15.17 0.00 45.41 5.28
1702 1883 2.789917 CAGCATCGCCTTCTGCAC 59.210 61.111 0.00 0.00 40.88 4.57
1894 2075 2.506438 GTAGGTGCGCTCGGTGAC 60.506 66.667 9.73 0.00 0.00 3.67
1963 2144 0.580578 CTGCACAGATGAGCGTATGC 59.419 55.000 0.00 0.00 43.24 3.14
1964 2145 1.591619 CACTGCACAGATGAGCGTATG 59.408 52.381 4.31 0.00 34.29 2.39
2041 2242 4.609018 CGCGGGATGCCCAGGTAG 62.609 72.222 0.00 0.00 45.83 3.18
2242 2443 0.329261 TGGAGATGAAGGCCACCTTG 59.671 55.000 5.01 0.00 44.82 3.61
2250 2451 2.125773 AGCAAAGCTGGAGATGAAGG 57.874 50.000 0.00 0.00 37.57 3.46
2251 2452 3.079578 TCAAGCAAAGCTGGAGATGAAG 58.920 45.455 0.00 0.00 39.62 3.02
2262 2482 3.054878 CACATGGAGTTTCAAGCAAAGC 58.945 45.455 0.00 0.00 0.00 3.51
2280 2500 3.719924 CAAAGCCTGAGAAATTTGCACA 58.280 40.909 0.00 0.00 0.00 4.57
2287 2507 4.690122 GCATATTGCAAAGCCTGAGAAAT 58.310 39.130 1.71 0.00 44.26 2.17
2288 2508 4.114058 GCATATTGCAAAGCCTGAGAAA 57.886 40.909 1.71 0.00 44.26 2.52
2289 2509 3.788333 GCATATTGCAAAGCCTGAGAA 57.212 42.857 1.71 0.00 44.26 2.87
2301 2521 1.762419 CCTGCGACAATGCATATTGC 58.238 50.000 13.81 13.81 46.05 3.56
2302 2522 1.335810 AGCCTGCGACAATGCATATTG 59.664 47.619 0.00 0.00 45.26 1.90
2304 2524 0.949397 CAGCCTGCGACAATGCATAT 59.051 50.000 0.00 0.00 45.26 1.78
2305 2525 0.392863 ACAGCCTGCGACAATGCATA 60.393 50.000 0.00 0.00 45.26 3.14
2306 2526 1.676635 ACAGCCTGCGACAATGCAT 60.677 52.632 0.00 0.00 45.26 3.96
2308 2528 1.855213 TTCACAGCCTGCGACAATGC 61.855 55.000 0.00 0.00 0.00 3.56
2310 2530 0.035317 TCTTCACAGCCTGCGACAAT 59.965 50.000 0.00 0.00 0.00 2.71
2311 2531 0.601046 CTCTTCACAGCCTGCGACAA 60.601 55.000 0.00 0.00 0.00 3.18
2313 2533 2.386660 GCTCTTCACAGCCTGCGAC 61.387 63.158 0.00 0.00 32.76 5.19
2314 2534 2.047844 GCTCTTCACAGCCTGCGA 60.048 61.111 0.00 0.00 32.76 5.10
2316 2536 2.047844 TCGCTCTTCACAGCCTGC 60.048 61.111 0.00 0.00 35.84 4.85
2322 2613 1.206831 CGACGTCTCGCTCTTCACA 59.793 57.895 14.70 0.00 31.91 3.58
2343 2634 1.672356 CAGCCCCAACTCGAAGGTG 60.672 63.158 0.00 0.00 31.21 4.00
2628 2919 2.589492 GCGGCGTTGAGATCGATGG 61.589 63.158 9.37 0.00 0.00 3.51
2699 3002 7.199766 CACTTGAATAGAGGAGACAGATGTAC 58.800 42.308 0.00 0.00 0.00 2.90
2709 3012 3.198635 TCTTGGCCACTTGAATAGAGGAG 59.801 47.826 3.88 0.00 36.79 3.69
2739 3056 2.752030 TCAGTAGCCCTAGCATTCAGT 58.248 47.619 0.00 0.00 43.56 3.41
2750 3067 4.672587 TGAACATACTGATCAGTAGCCC 57.327 45.455 32.81 22.98 45.94 5.19
2800 3119 7.441458 GGCATAGAGGAATGAATAAAACGTACT 59.559 37.037 0.00 0.00 0.00 2.73
2803 3122 6.357367 AGGCATAGAGGAATGAATAAAACGT 58.643 36.000 0.00 0.00 0.00 3.99
2804 3123 6.483307 TGAGGCATAGAGGAATGAATAAAACG 59.517 38.462 0.00 0.00 0.00 3.60
2805 3124 7.807977 TGAGGCATAGAGGAATGAATAAAAC 57.192 36.000 0.00 0.00 0.00 2.43
2806 3125 7.833682 TGTTGAGGCATAGAGGAATGAATAAAA 59.166 33.333 0.00 0.00 0.00 1.52
2813 3132 4.264253 TGTTGTTGAGGCATAGAGGAATG 58.736 43.478 0.00 0.00 0.00 2.67
2817 3136 3.529533 CTCTGTTGTTGAGGCATAGAGG 58.470 50.000 0.00 0.00 31.84 3.69
2833 3152 2.465813 AGCTATTCTGTCTGGCTCTGT 58.534 47.619 0.00 0.00 0.00 3.41
2834 3153 3.118847 TGAAGCTATTCTGTCTGGCTCTG 60.119 47.826 0.00 0.00 36.33 3.35
2835 3154 3.102972 TGAAGCTATTCTGTCTGGCTCT 58.897 45.455 0.00 0.00 36.33 4.09
2836 3155 3.533606 TGAAGCTATTCTGTCTGGCTC 57.466 47.619 0.00 0.00 36.33 4.70
2842 3161 6.092670 TGTGCTGTAAATGAAGCTATTCTGTC 59.907 38.462 0.00 0.00 40.21 3.51
2843 3162 5.939883 TGTGCTGTAAATGAAGCTATTCTGT 59.060 36.000 0.00 0.00 40.21 3.41
2844 3163 6.426980 TGTGCTGTAAATGAAGCTATTCTG 57.573 37.500 0.00 0.00 40.21 3.02
2847 3166 6.868339 GGTTTTGTGCTGTAAATGAAGCTATT 59.132 34.615 0.00 0.00 40.21 1.73
2849 3168 5.300539 TGGTTTTGTGCTGTAAATGAAGCTA 59.699 36.000 0.00 0.00 40.21 3.32
2851 3170 4.209080 GTGGTTTTGTGCTGTAAATGAAGC 59.791 41.667 0.00 0.00 39.96 3.86
2854 3173 4.991153 TGTGGTTTTGTGCTGTAAATGA 57.009 36.364 0.00 0.00 0.00 2.57
2869 3188 2.033602 GCGGGCTAGGTTGTGGTT 59.966 61.111 0.00 0.00 0.00 3.67
2892 3211 0.817013 AATAATGCCGGCTGTGTTGG 59.183 50.000 29.70 0.00 0.00 3.77
2893 3212 1.912001 CAATAATGCCGGCTGTGTTG 58.088 50.000 29.70 23.37 0.00 3.33
2932 3251 2.166870 CGGCACCCTGTGTTGTAGTATA 59.833 50.000 0.00 0.00 35.75 1.47
2934 3253 0.319083 CGGCACCCTGTGTTGTAGTA 59.681 55.000 0.00 0.00 35.75 1.82
2935 3254 1.070786 CGGCACCCTGTGTTGTAGT 59.929 57.895 0.00 0.00 35.75 2.73
2936 3255 0.250124 TTCGGCACCCTGTGTTGTAG 60.250 55.000 0.00 0.00 35.75 2.74
2965 3284 0.457337 CGTAAGGTACCACCACTCGC 60.457 60.000 15.94 0.00 41.95 5.03
2984 3303 4.919754 CGTGTATAGTTATCCCGGTTTAGC 59.080 45.833 0.00 0.00 0.00 3.09
2988 3307 3.565307 TCCGTGTATAGTTATCCCGGTT 58.435 45.455 0.00 0.00 35.59 4.44
3038 3372 1.355971 CTAAAGCGTGCCGTATGTGT 58.644 50.000 0.00 0.00 0.00 3.72
3064 3398 4.675146 GCCCTGCTGTTGTTGTGTTATATG 60.675 45.833 0.00 0.00 0.00 1.78
3098 3432 3.103007 TGTATGTTATCGCGTCGTCTTG 58.897 45.455 5.77 0.00 0.00 3.02
3101 3435 2.965414 CTCTGTATGTTATCGCGTCGTC 59.035 50.000 5.77 0.00 0.00 4.20
3103 3437 1.709203 GCTCTGTATGTTATCGCGTCG 59.291 52.381 5.77 0.00 0.00 5.12
3104 3438 2.727777 TGCTCTGTATGTTATCGCGTC 58.272 47.619 5.77 0.00 0.00 5.19
3116 3450 2.356741 GGTTTAGCCCCAATGCTCTGTA 60.357 50.000 0.00 0.00 41.68 2.74
3121 3455 0.409484 ACTGGTTTAGCCCCAATGCT 59.591 50.000 0.00 0.00 45.38 3.79
3125 3459 0.187361 AGCAACTGGTTTAGCCCCAA 59.813 50.000 0.00 0.00 36.04 4.12
3128 3462 0.895559 AGCAGCAACTGGTTTAGCCC 60.896 55.000 0.00 0.00 39.27 5.19
3129 3463 1.821216 TAGCAGCAACTGGTTTAGCC 58.179 50.000 4.45 0.00 42.44 3.93
3139 3473 3.119173 AGACTGACTGAGATAGCAGCAAC 60.119 47.826 0.00 0.00 39.51 4.17
3165 3499 2.753029 GAGTGTGGGGCAGAAGCT 59.247 61.111 0.00 0.00 41.70 3.74
3300 3634 4.177783 TGCGCTAACGTGATAAAATCTCA 58.822 39.130 9.73 0.00 42.83 3.27
3341 3675 1.269051 GCAACTTTCACGTCCAAAGGG 60.269 52.381 17.03 11.37 35.49 3.95
3342 3676 1.403679 TGCAACTTTCACGTCCAAAGG 59.596 47.619 17.03 5.42 35.49 3.11
3346 3682 1.336440 CCAATGCAACTTTCACGTCCA 59.664 47.619 0.00 0.00 0.00 4.02
3465 3801 1.673400 AGAGATGTGATCGTCCAGTCG 59.327 52.381 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.