Multiple sequence alignment - TraesCS3A01G484300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G484300 chr3A 100.000 6780 0 0 1 6780 714149980 714156759 0.000000e+00 12521.0
1 TraesCS3A01G484300 chr3A 90.909 176 13 2 1096 1271 61799518 61799690 4.090000e-57 233.0
2 TraesCS3A01G484300 chr4B 98.535 1707 23 2 2625 4329 624157979 624156273 0.000000e+00 3013.0
3 TraesCS3A01G484300 chr4B 83.792 691 81 15 3 680 645454406 645453734 1.610000e-175 627.0
4 TraesCS3A01G484300 chr2A 98.474 1704 22 4 2626 4327 673150123 673148422 0.000000e+00 3000.0
5 TraesCS3A01G484300 chr2A 95.477 398 16 2 3931 4327 247009143 247009539 9.590000e-178 634.0
6 TraesCS3A01G484300 chr2A 83.936 691 81 18 3 680 671328423 671327750 9.590000e-178 634.0
7 TraesCS3A01G484300 chr2A 78.302 424 77 14 2625 3041 66766594 66766179 6.750000e-65 259.0
8 TraesCS3A01G484300 chr2A 92.500 160 12 0 1112 1271 111273462 111273303 5.290000e-56 230.0
9 TraesCS3A01G484300 chr2A 90.625 128 12 0 2626 2753 689783493 689783620 3.250000e-38 171.0
10 TraesCS3A01G484300 chr6A 98.242 1706 28 2 2623 4327 93342288 93340584 0.000000e+00 2983.0
11 TraesCS3A01G484300 chr6A 95.990 399 15 1 3931 4328 279947275 279947673 0.000000e+00 647.0
12 TraesCS3A01G484300 chr3B 90.262 2331 128 37 4336 6618 772398219 772400498 0.000000e+00 2955.0
13 TraesCS3A01G484300 chr3B 85.899 851 66 27 675 1517 772396404 772397208 0.000000e+00 857.0
14 TraesCS3A01G484300 chr3B 93.299 582 32 5 1563 2142 772397204 772397780 0.000000e+00 852.0
15 TraesCS3A01G484300 chr3B 94.521 438 20 1 2181 2614 772397780 772398217 0.000000e+00 673.0
16 TraesCS3A01G484300 chr3B 90.189 265 22 3 1096 1360 47158536 47158796 6.510000e-90 342.0
17 TraesCS3A01G484300 chr3B 90.164 122 11 1 1579 1700 80295869 80295749 2.530000e-34 158.0
18 TraesCS3A01G484300 chr3B 94.624 93 5 0 6688 6780 772400658 772400750 1.970000e-30 145.0
19 TraesCS3A01G484300 chr5A 97.948 1706 23 4 2626 4329 502618327 502616632 0.000000e+00 2946.0
20 TraesCS3A01G484300 chr5A 98.102 1317 22 3 2626 3941 79470598 79469284 0.000000e+00 2290.0
21 TraesCS3A01G484300 chr5A 97.818 1329 23 6 2618 3941 706045139 706046466 0.000000e+00 2289.0
22 TraesCS3A01G484300 chr5A 91.477 176 12 2 1096 1271 241460183 241460011 8.790000e-59 239.0
23 TraesCS3A01G484300 chrUn 98.515 1414 20 1 2915 4327 390593365 390594778 0.000000e+00 2494.0
24 TraesCS3A01G484300 chr7B 98.496 1330 17 3 2626 3954 705818440 705819767 0.000000e+00 2342.0
25 TraesCS3A01G484300 chr7B 95.545 404 16 2 3934 4335 62697834 62697431 0.000000e+00 645.0
26 TraesCS3A01G484300 chr3D 91.248 1691 93 26 4382 6042 578416217 578414552 0.000000e+00 2252.0
27 TraesCS3A01G484300 chr3D 91.350 1052 71 7 1578 2619 578417601 578416560 0.000000e+00 1421.0
28 TraesCS3A01G484300 chr3D 93.573 529 17 7 6103 6617 578414521 578413996 0.000000e+00 773.0
29 TraesCS3A01G484300 chr3D 92.764 539 18 7 736 1274 578418406 578417889 0.000000e+00 760.0
30 TraesCS3A01G484300 chr3D 90.230 348 31 3 4331 4677 578416566 578416221 1.040000e-122 451.0
31 TraesCS3A01G484300 chr3D 96.739 92 3 0 6689 6780 578413998 578413907 3.270000e-33 154.0
32 TraesCS3A01G484300 chr2D 93.575 1214 71 7 2729 3941 353546392 353545185 0.000000e+00 1803.0
33 TraesCS3A01G484300 chr7D 86.589 686 64 15 2 674 228021572 228022242 0.000000e+00 732.0
34 TraesCS3A01G484300 chr7D 85.072 690 74 13 2 678 562104434 562105107 0.000000e+00 676.0
35 TraesCS3A01G484300 chr7D 93.651 63 4 0 1638 1700 70294299 70294237 2.010000e-15 95.3
36 TraesCS3A01G484300 chr6D 84.738 688 79 9 2 679 161387270 161386599 0.000000e+00 665.0
37 TraesCS3A01G484300 chr4A 96.500 400 13 1 3931 4329 140988004 140988403 0.000000e+00 660.0
38 TraesCS3A01G484300 chr4A 87.363 546 49 12 58 601 727903196 727902669 5.810000e-170 608.0
39 TraesCS3A01G484300 chr1B 86.986 584 66 3 872 1449 599469026 599469605 0.000000e+00 649.0
40 TraesCS3A01G484300 chr1B 76.549 597 94 27 4794 5382 94227951 94227393 1.110000e-72 285.0
41 TraesCS3A01G484300 chr1B 90.164 122 12 0 1579 1700 143192324 143192445 7.040000e-35 159.0
42 TraesCS3A01G484300 chr2B 83.429 694 80 19 3 680 45548210 45547536 4.490000e-171 612.0
43 TraesCS3A01G484300 chr5B 82.678 687 90 12 3 680 421154843 421154177 3.520000e-162 582.0
44 TraesCS3A01G484300 chr1A 87.795 508 49 10 2 504 532265151 532265650 3.520000e-162 582.0
45 TraesCS3A01G484300 chr1A 90.909 176 13 2 1096 1271 528586878 528587050 4.090000e-57 233.0
46 TraesCS3A01G484300 chr1A 89.773 176 15 2 1096 1271 388493470 388493298 8.850000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G484300 chr3A 714149980 714156759 6779 False 12521.0 12521 100.000000 1 6780 1 chr3A.!!$F2 6779
1 TraesCS3A01G484300 chr4B 624156273 624157979 1706 True 3013.0 3013 98.535000 2625 4329 1 chr4B.!!$R1 1704
2 TraesCS3A01G484300 chr4B 645453734 645454406 672 True 627.0 627 83.792000 3 680 1 chr4B.!!$R2 677
3 TraesCS3A01G484300 chr2A 673148422 673150123 1701 True 3000.0 3000 98.474000 2626 4327 1 chr2A.!!$R4 1701
4 TraesCS3A01G484300 chr2A 671327750 671328423 673 True 634.0 634 83.936000 3 680 1 chr2A.!!$R3 677
5 TraesCS3A01G484300 chr6A 93340584 93342288 1704 True 2983.0 2983 98.242000 2623 4327 1 chr6A.!!$R1 1704
6 TraesCS3A01G484300 chr3B 772396404 772400750 4346 False 1096.4 2955 91.721000 675 6780 5 chr3B.!!$F2 6105
7 TraesCS3A01G484300 chr5A 502616632 502618327 1695 True 2946.0 2946 97.948000 2626 4329 1 chr5A.!!$R3 1703
8 TraesCS3A01G484300 chr5A 79469284 79470598 1314 True 2290.0 2290 98.102000 2626 3941 1 chr5A.!!$R1 1315
9 TraesCS3A01G484300 chr5A 706045139 706046466 1327 False 2289.0 2289 97.818000 2618 3941 1 chr5A.!!$F1 1323
10 TraesCS3A01G484300 chrUn 390593365 390594778 1413 False 2494.0 2494 98.515000 2915 4327 1 chrUn.!!$F1 1412
11 TraesCS3A01G484300 chr7B 705818440 705819767 1327 False 2342.0 2342 98.496000 2626 3954 1 chr7B.!!$F1 1328
12 TraesCS3A01G484300 chr3D 578413907 578418406 4499 True 968.5 2252 92.650667 736 6780 6 chr3D.!!$R1 6044
13 TraesCS3A01G484300 chr2D 353545185 353546392 1207 True 1803.0 1803 93.575000 2729 3941 1 chr2D.!!$R1 1212
14 TraesCS3A01G484300 chr7D 228021572 228022242 670 False 732.0 732 86.589000 2 674 1 chr7D.!!$F1 672
15 TraesCS3A01G484300 chr7D 562104434 562105107 673 False 676.0 676 85.072000 2 678 1 chr7D.!!$F2 676
16 TraesCS3A01G484300 chr6D 161386599 161387270 671 True 665.0 665 84.738000 2 679 1 chr6D.!!$R1 677
17 TraesCS3A01G484300 chr4A 727902669 727903196 527 True 608.0 608 87.363000 58 601 1 chr4A.!!$R1 543
18 TraesCS3A01G484300 chr1B 599469026 599469605 579 False 649.0 649 86.986000 872 1449 1 chr1B.!!$F2 577
19 TraesCS3A01G484300 chr1B 94227393 94227951 558 True 285.0 285 76.549000 4794 5382 1 chr1B.!!$R1 588
20 TraesCS3A01G484300 chr2B 45547536 45548210 674 True 612.0 612 83.429000 3 680 1 chr2B.!!$R1 677
21 TraesCS3A01G484300 chr5B 421154177 421154843 666 True 582.0 582 82.678000 3 680 1 chr5B.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 622 0.099436 GATGCCGCTGATGGTGTTTC 59.901 55.000 0.00 0.0 0.00 2.78 F
617 623 0.608856 ATGCCGCTGATGGTGTTTCA 60.609 50.000 0.00 0.0 0.00 2.69 F
623 629 1.128692 GCTGATGGTGTTTCACGCTAC 59.871 52.381 0.00 0.0 34.83 3.58 F
1489 1540 1.204704 TCAATCTGTGCTCAGTACCGG 59.795 52.381 15.01 0.0 41.91 5.28 F
1548 1599 2.096069 CGTGTCAAAGGATGTGCTGAAG 60.096 50.000 0.00 0.0 0.00 3.02 F
2471 2579 2.216898 CCTATGCTCTTGCCTTAGTGC 58.783 52.381 0.00 0.0 38.71 4.40 F
2978 3089 1.152984 CACCAGACCAACTGCACCA 60.153 57.895 0.00 0.0 44.52 4.17 F
4218 4504 2.174639 CTGGGTATAATGGGAAGCACCA 59.825 50.000 2.58 0.0 46.24 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 1812 1.234821 GATTGTTCCGACCTGCAACA 58.765 50.000 0.00 0.00 0.00 3.33 R
1955 2014 1.725641 TTGCAGAGATAACAGTGGCG 58.274 50.000 0.00 0.00 0.00 5.69 R
2155 2215 3.788227 TGGACTGAAGGTAGTTTGCAT 57.212 42.857 0.00 0.00 0.00 3.96 R
2471 2579 5.618195 GCAATTTCAATGCAAATGACTTGGG 60.618 40.000 18.77 7.39 43.29 4.12 R
2621 2729 7.604927 GTGACTTGTGGTGTATTTACCTCAATA 59.395 37.037 11.41 2.02 46.81 1.90 R
4273 4559 1.831389 CTGACGGTCAGTTTGGTGCG 61.831 60.000 26.22 2.24 39.58 5.34 R
4393 4679 1.959042 AACTGGAGAACACAGCACTG 58.041 50.000 0.00 0.00 39.55 3.66 R
6091 6725 0.250467 GCCTCAACAACAGAGCCAGA 60.250 55.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.292223 CATCACCGTCGGACCTGTT 59.708 57.895 20.51 0.00 0.00 3.16
126 130 2.210711 CCCCTCCATCGGGTCTAGC 61.211 68.421 0.00 0.00 43.06 3.42
128 132 0.760945 CCCTCCATCGGGTCTAGCTT 60.761 60.000 0.00 0.00 39.51 3.74
129 133 1.480683 CCCTCCATCGGGTCTAGCTTA 60.481 57.143 0.00 0.00 39.51 3.09
130 134 1.889829 CCTCCATCGGGTCTAGCTTAG 59.110 57.143 0.00 0.00 34.93 2.18
131 135 1.889829 CTCCATCGGGTCTAGCTTAGG 59.110 57.143 0.00 0.00 34.93 2.69
132 136 1.217183 TCCATCGGGTCTAGCTTAGGT 59.783 52.381 0.00 0.00 34.93 3.08
133 137 2.040178 CCATCGGGTCTAGCTTAGGTT 58.960 52.381 0.00 0.00 0.00 3.50
200 204 1.839994 CCTGGCCAGAGGTCTTTCATA 59.160 52.381 34.91 0.00 0.00 2.15
218 222 8.680903 TCTTTCATATCTGCTTTCTTCATTTCC 58.319 33.333 0.00 0.00 0.00 3.13
221 225 7.341030 TCATATCTGCTTTCTTCATTTCCTCA 58.659 34.615 0.00 0.00 0.00 3.86
252 258 5.694231 TGATTCACATTTCACTGAACAGG 57.306 39.130 6.76 0.00 0.00 4.00
256 262 6.522625 TTCACATTTCACTGAACAGGAAAA 57.477 33.333 16.09 11.61 34.09 2.29
298 304 1.073125 TCGAACCCAAATCAGGCTTCA 59.927 47.619 0.00 0.00 0.00 3.02
304 310 6.625532 AACCCAAATCAGGCTTCATAAAAT 57.374 33.333 0.00 0.00 0.00 1.82
340 346 0.303191 TCGTGTGCACACATTCAACG 59.697 50.000 40.31 28.07 46.75 4.10
368 374 2.436417 AGCTTCATTACCAATGTGCGT 58.564 42.857 11.03 0.00 40.96 5.24
377 383 5.950758 TTACCAATGTGCGTTATGAAACT 57.049 34.783 0.00 0.00 33.15 2.66
391 397 7.201384 GCGTTATGAAACTACTAGGTTACACAC 60.201 40.741 0.00 0.00 33.15 3.82
460 466 6.211587 TGATTTCAATGGATTGTGCTTAGG 57.788 37.500 0.00 0.00 38.84 2.69
461 467 5.951148 TGATTTCAATGGATTGTGCTTAGGA 59.049 36.000 0.00 0.00 38.84 2.94
467 473 6.436847 TCAATGGATTGTGCTTAGGATTTTGA 59.563 34.615 0.00 0.00 38.84 2.69
475 481 7.523293 TGTGCTTAGGATTTTGAATTTCTCA 57.477 32.000 0.00 0.00 0.00 3.27
493 499 0.179000 CATTTAGCGGCCTGAGGACT 59.821 55.000 0.65 0.00 0.00 3.85
521 527 2.204151 CCCCTCCCCTGGTCACTT 60.204 66.667 0.00 0.00 0.00 3.16
522 528 2.606587 CCCCTCCCCTGGTCACTTG 61.607 68.421 0.00 0.00 0.00 3.16
523 529 1.538876 CCCTCCCCTGGTCACTTGA 60.539 63.158 0.00 0.00 0.00 3.02
524 530 0.916358 CCCTCCCCTGGTCACTTGAT 60.916 60.000 0.00 0.00 0.00 2.57
525 531 1.625228 CCCTCCCCTGGTCACTTGATA 60.625 57.143 0.00 0.00 0.00 2.15
526 532 2.196595 CCTCCCCTGGTCACTTGATAA 58.803 52.381 0.00 0.00 0.00 1.75
527 533 2.171448 CCTCCCCTGGTCACTTGATAAG 59.829 54.545 0.00 0.00 0.00 1.73
528 534 2.840651 CTCCCCTGGTCACTTGATAAGT 59.159 50.000 0.00 0.00 44.06 2.24
529 535 3.256704 TCCCCTGGTCACTTGATAAGTT 58.743 45.455 0.00 0.00 40.46 2.66
530 536 3.009033 TCCCCTGGTCACTTGATAAGTTG 59.991 47.826 0.00 0.00 40.46 3.16
531 537 3.009033 CCCCTGGTCACTTGATAAGTTGA 59.991 47.826 0.00 0.00 40.46 3.18
532 538 4.324563 CCCCTGGTCACTTGATAAGTTGAT 60.325 45.833 0.00 0.00 40.46 2.57
533 539 5.104527 CCCCTGGTCACTTGATAAGTTGATA 60.105 44.000 0.00 0.00 40.46 2.15
534 540 6.409695 CCCCTGGTCACTTGATAAGTTGATAT 60.410 42.308 0.00 0.00 40.46 1.63
535 541 7.202093 CCCCTGGTCACTTGATAAGTTGATATA 60.202 40.741 0.00 0.00 40.46 0.86
536 542 7.657761 CCCTGGTCACTTGATAAGTTGATATAC 59.342 40.741 0.00 0.00 40.46 1.47
537 543 7.657761 CCTGGTCACTTGATAAGTTGATATACC 59.342 40.741 0.00 0.00 40.46 2.73
538 544 8.084985 TGGTCACTTGATAAGTTGATATACCA 57.915 34.615 0.00 0.00 40.46 3.25
539 545 8.713971 TGGTCACTTGATAAGTTGATATACCAT 58.286 33.333 0.00 0.00 40.46 3.55
540 546 9.561069 GGTCACTTGATAAGTTGATATACCATT 57.439 33.333 0.00 0.00 40.46 3.16
584 590 9.898152 ACAATTTTCAACCAATTTAAAGGAAGA 57.102 25.926 0.71 0.00 0.00 2.87
588 594 9.762933 TTTTCAACCAATTTAAAGGAAGAGATG 57.237 29.630 0.71 0.00 0.00 2.90
589 595 7.466746 TCAACCAATTTAAAGGAAGAGATGG 57.533 36.000 0.71 0.00 0.00 3.51
590 596 7.237982 TCAACCAATTTAAAGGAAGAGATGGA 58.762 34.615 0.71 0.00 0.00 3.41
591 597 7.176690 TCAACCAATTTAAAGGAAGAGATGGAC 59.823 37.037 0.71 0.00 0.00 4.02
592 598 5.952347 ACCAATTTAAAGGAAGAGATGGACC 59.048 40.000 0.71 0.00 0.00 4.46
593 599 6.190587 CCAATTTAAAGGAAGAGATGGACCT 58.809 40.000 0.00 0.00 0.00 3.85
594 600 6.096001 CCAATTTAAAGGAAGAGATGGACCTG 59.904 42.308 0.00 0.00 32.73 4.00
595 601 2.797177 AAAGGAAGAGATGGACCTGC 57.203 50.000 0.00 0.00 32.73 4.85
596 602 0.915364 AAGGAAGAGATGGACCTGCC 59.085 55.000 0.00 0.00 32.73 4.85
597 603 1.144936 GGAAGAGATGGACCTGCCG 59.855 63.158 0.00 0.00 40.66 5.69
598 604 1.330655 GGAAGAGATGGACCTGCCGA 61.331 60.000 0.00 0.00 40.66 5.54
599 605 0.755686 GAAGAGATGGACCTGCCGAT 59.244 55.000 0.00 0.00 40.66 4.18
600 606 0.467384 AAGAGATGGACCTGCCGATG 59.533 55.000 0.00 0.00 40.66 3.84
601 607 1.596477 GAGATGGACCTGCCGATGC 60.596 63.158 0.00 0.00 40.66 3.91
602 608 2.592861 GATGGACCTGCCGATGCC 60.593 66.667 0.00 0.00 40.66 4.40
603 609 4.552365 ATGGACCTGCCGATGCCG 62.552 66.667 0.00 0.00 40.66 5.69
608 614 4.923942 CCTGCCGATGCCGCTGAT 62.924 66.667 0.00 0.00 36.33 2.90
609 615 3.646976 CTGCCGATGCCGCTGATG 61.647 66.667 0.00 0.00 36.33 3.07
612 618 3.274586 CCGATGCCGCTGATGGTG 61.275 66.667 0.00 0.00 0.00 4.17
613 619 2.512286 CGATGCCGCTGATGGTGT 60.512 61.111 0.00 0.00 0.00 4.16
614 620 2.108514 CGATGCCGCTGATGGTGTT 61.109 57.895 0.00 0.00 0.00 3.32
615 621 1.647545 CGATGCCGCTGATGGTGTTT 61.648 55.000 0.00 0.00 0.00 2.83
616 622 0.099436 GATGCCGCTGATGGTGTTTC 59.901 55.000 0.00 0.00 0.00 2.78
617 623 0.608856 ATGCCGCTGATGGTGTTTCA 60.609 50.000 0.00 0.00 0.00 2.69
618 624 1.210155 GCCGCTGATGGTGTTTCAC 59.790 57.895 0.00 0.00 0.00 3.18
619 625 1.497278 CCGCTGATGGTGTTTCACG 59.503 57.895 0.00 0.00 34.83 4.35
620 626 1.154413 CGCTGATGGTGTTTCACGC 60.154 57.895 0.00 0.00 34.83 5.34
621 627 1.568612 CGCTGATGGTGTTTCACGCT 61.569 55.000 0.00 0.00 34.83 5.07
622 628 1.438651 GCTGATGGTGTTTCACGCTA 58.561 50.000 0.00 0.00 34.83 4.26
623 629 1.128692 GCTGATGGTGTTTCACGCTAC 59.871 52.381 0.00 0.00 34.83 3.58
624 630 2.688507 CTGATGGTGTTTCACGCTACT 58.311 47.619 0.00 0.00 34.83 2.57
625 631 3.067106 CTGATGGTGTTTCACGCTACTT 58.933 45.455 0.00 0.00 34.83 2.24
626 632 3.472652 TGATGGTGTTTCACGCTACTTT 58.527 40.909 0.00 0.00 34.83 2.66
627 633 3.880490 TGATGGTGTTTCACGCTACTTTT 59.120 39.130 0.00 0.00 34.83 2.27
628 634 4.336993 TGATGGTGTTTCACGCTACTTTTT 59.663 37.500 0.00 0.00 34.83 1.94
656 662 9.807649 AAACAAAAATCAGGTATATCATCAAGC 57.192 29.630 0.00 0.00 0.00 4.01
657 663 7.945134 ACAAAAATCAGGTATATCATCAAGCC 58.055 34.615 0.00 0.00 0.00 4.35
658 664 6.808008 AAAATCAGGTATATCATCAAGCCG 57.192 37.500 0.00 0.00 0.00 5.52
659 665 3.961480 TCAGGTATATCATCAAGCCGG 57.039 47.619 0.00 0.00 0.00 6.13
660 666 3.506398 TCAGGTATATCATCAAGCCGGA 58.494 45.455 5.05 0.00 0.00 5.14
661 667 4.096681 TCAGGTATATCATCAAGCCGGAT 58.903 43.478 5.05 0.00 0.00 4.18
662 668 4.532126 TCAGGTATATCATCAAGCCGGATT 59.468 41.667 5.05 0.00 0.00 3.01
663 669 5.719563 TCAGGTATATCATCAAGCCGGATTA 59.280 40.000 3.74 0.00 0.00 1.75
664 670 6.212589 TCAGGTATATCATCAAGCCGGATTAA 59.787 38.462 3.74 0.00 0.00 1.40
665 671 6.536582 CAGGTATATCATCAAGCCGGATTAAG 59.463 42.308 3.74 0.00 0.00 1.85
666 672 6.440647 AGGTATATCATCAAGCCGGATTAAGA 59.559 38.462 3.74 3.65 0.00 2.10
667 673 7.126421 AGGTATATCATCAAGCCGGATTAAGAT 59.874 37.037 3.74 11.34 0.00 2.40
668 674 7.770897 GGTATATCATCAAGCCGGATTAAGATT 59.229 37.037 3.74 3.44 0.00 2.40
669 675 9.817809 GTATATCATCAAGCCGGATTAAGATTA 57.182 33.333 3.74 0.00 0.00 1.75
670 676 8.723942 ATATCATCAAGCCGGATTAAGATTAC 57.276 34.615 3.74 0.00 0.00 1.89
671 677 5.924356 TCATCAAGCCGGATTAAGATTACA 58.076 37.500 3.74 0.00 0.00 2.41
672 678 5.758296 TCATCAAGCCGGATTAAGATTACAC 59.242 40.000 3.74 0.00 0.00 2.90
673 679 4.116961 TCAAGCCGGATTAAGATTACACG 58.883 43.478 3.74 0.00 0.00 4.49
674 680 4.116961 CAAGCCGGATTAAGATTACACGA 58.883 43.478 3.74 0.00 0.00 4.35
675 681 3.978687 AGCCGGATTAAGATTACACGAG 58.021 45.455 5.05 0.00 0.00 4.18
676 682 2.475487 GCCGGATTAAGATTACACGAGC 59.525 50.000 5.05 0.00 0.00 5.03
677 683 2.724690 CCGGATTAAGATTACACGAGCG 59.275 50.000 0.00 0.00 0.00 5.03
678 684 3.369385 CGGATTAAGATTACACGAGCGT 58.631 45.455 0.00 0.00 0.00 5.07
679 685 3.795101 CGGATTAAGATTACACGAGCGTT 59.205 43.478 0.00 0.00 0.00 4.84
680 686 4.085721 CGGATTAAGATTACACGAGCGTTC 60.086 45.833 0.00 0.00 0.00 3.95
702 708 3.991051 CTGACGCCACGTGGAGGT 61.991 66.667 38.30 31.34 41.37 3.85
721 727 4.657824 AACCTGTCGCGGTGTCGG 62.658 66.667 6.13 2.63 37.36 4.79
732 738 2.049063 GTGTCGGCGAGCAAGACT 60.049 61.111 11.20 0.00 36.01 3.24
794 800 4.789075 CTACGTGGCACCCGTCCG 62.789 72.222 12.86 1.19 39.60 4.79
869 875 2.280389 CACGACCAGCACAGCACT 60.280 61.111 0.00 0.00 0.00 4.40
870 876 2.029666 ACGACCAGCACAGCACTC 59.970 61.111 0.00 0.00 0.00 3.51
1273 1289 1.520342 GTCATCTCGGTGAGCCTGC 60.520 63.158 0.00 0.00 0.00 4.85
1343 1359 2.543777 AACACCGTAGCAACTGATGT 57.456 45.000 0.00 0.00 0.00 3.06
1354 1370 2.786854 CAACTGATGTACTCGAGGTCG 58.213 52.381 18.41 8.10 41.45 4.79
1369 1385 5.337554 TCGAGGTCGTAGAAATGTTATGTG 58.662 41.667 0.00 0.00 39.69 3.21
1392 1408 7.084486 GTGATCTAGGGAAAAATTGTGTGAAC 58.916 38.462 0.00 0.00 0.00 3.18
1407 1458 1.987770 GTGAACAATTTGCTGGATGCG 59.012 47.619 0.00 0.00 46.63 4.73
1412 1463 2.358898 ACAATTTGCTGGATGCGGTATC 59.641 45.455 0.00 0.00 46.63 2.24
1450 1501 6.849588 TTGTCATGTGAAATCCATCTATCG 57.150 37.500 0.00 0.00 0.00 2.92
1452 1503 5.163311 TGTCATGTGAAATCCATCTATCGGT 60.163 40.000 0.00 0.00 0.00 4.69
1488 1539 2.654749 TCAATCTGTGCTCAGTACCG 57.345 50.000 15.01 3.86 41.91 4.02
1489 1540 1.204704 TCAATCTGTGCTCAGTACCGG 59.795 52.381 15.01 0.00 41.91 5.28
1502 1553 4.328536 TCAGTACCGGCAATTTGTACATT 58.671 39.130 0.00 0.00 37.82 2.71
1506 1557 4.592485 ACCGGCAATTTGTACATTTTCA 57.408 36.364 0.00 0.00 0.00 2.69
1510 1561 5.220191 CCGGCAATTTGTACATTTTCATTCG 60.220 40.000 0.00 0.00 0.00 3.34
1527 1578 8.883789 TTTCATTCGTGAAAATACGGTTTATC 57.116 30.769 1.41 0.00 43.85 1.75
1528 1579 6.698107 TCATTCGTGAAAATACGGTTTATCG 58.302 36.000 0.00 0.00 43.85 2.92
1529 1580 6.310956 TCATTCGTGAAAATACGGTTTATCGT 59.689 34.615 0.00 0.00 43.85 3.73
1532 1583 5.060816 TCGTGAAAATACGGTTTATCGTGTC 59.939 40.000 0.00 0.00 43.70 3.67
1548 1599 2.096069 CGTGTCAAAGGATGTGCTGAAG 60.096 50.000 0.00 0.00 0.00 3.02
1559 1615 2.570135 TGTGCTGAAGTGCATGTTGTA 58.430 42.857 0.00 0.00 45.23 2.41
1560 1616 2.948315 TGTGCTGAAGTGCATGTTGTAA 59.052 40.909 0.00 0.00 45.23 2.41
1568 1624 4.223320 AGTGCATGTTGTAAGGAAAACG 57.777 40.909 0.00 0.00 0.00 3.60
1569 1625 3.004315 AGTGCATGTTGTAAGGAAAACGG 59.996 43.478 0.00 0.00 0.00 4.44
1570 1626 2.952978 TGCATGTTGTAAGGAAAACGGT 59.047 40.909 0.00 0.00 0.00 4.83
1572 1628 3.855524 GCATGTTGTAAGGAAAACGGTGG 60.856 47.826 0.00 0.00 0.00 4.61
1574 1630 3.822940 TGTTGTAAGGAAAACGGTGGAT 58.177 40.909 0.00 0.00 0.00 3.41
1576 1632 4.645588 TGTTGTAAGGAAAACGGTGGATTT 59.354 37.500 0.00 0.00 0.00 2.17
1578 1634 6.490721 TGTTGTAAGGAAAACGGTGGATTTAT 59.509 34.615 0.00 0.00 0.00 1.40
1579 1635 7.014422 TGTTGTAAGGAAAACGGTGGATTTATT 59.986 33.333 0.00 0.00 0.00 1.40
1582 1638 9.902684 TGTAAGGAAAACGGTGGATTTATTATA 57.097 29.630 0.00 0.00 0.00 0.98
1588 1647 6.817765 AACGGTGGATTTATTATATGCCTG 57.182 37.500 0.00 0.00 0.00 4.85
1642 1701 6.998074 TGTAGGAATCATTTTAGGTATGGCAG 59.002 38.462 0.00 0.00 0.00 4.85
1662 1721 4.715527 AGATACCGTCTGTTTGTCTACC 57.284 45.455 0.00 0.00 35.31 3.18
1710 1769 6.769341 TGTTGGATCATCATTTATGGTCAGAG 59.231 38.462 0.00 0.00 46.10 3.35
1711 1770 5.872963 TGGATCATCATTTATGGTCAGAGG 58.127 41.667 0.00 0.00 46.10 3.69
1715 1774 6.416631 TCATCATTTATGGTCAGAGGAGAG 57.583 41.667 0.00 0.00 36.15 3.20
1718 1777 6.968263 TCATTTATGGTCAGAGGAGAGTAG 57.032 41.667 0.00 0.00 0.00 2.57
1733 1792 2.492484 AGAGTAGTAAACCCGCACAGAG 59.508 50.000 0.00 0.00 0.00 3.35
1749 1808 6.381801 CGCACAGAGAATTAATCACCTTTTT 58.618 36.000 0.00 0.00 0.00 1.94
1950 2009 5.611919 CAGTATCAATTGCCATATTCGTCG 58.388 41.667 0.00 0.00 0.00 5.12
1955 2014 3.963383 ATTGCCATATTCGTCGTTTCC 57.037 42.857 0.00 0.00 0.00 3.13
2017 2076 2.697229 CTGGTATGCCATCTCTCTGTCA 59.303 50.000 1.83 0.00 45.05 3.58
2018 2077 2.697229 TGGTATGCCATCTCTCTGTCAG 59.303 50.000 0.00 0.00 40.46 3.51
2019 2078 2.697751 GGTATGCCATCTCTCTGTCAGT 59.302 50.000 0.00 0.00 34.09 3.41
2172 2232 8.807948 ATGTTATTATGCAAACTACCTTCAGT 57.192 30.769 0.00 0.00 0.00 3.41
2173 2233 8.263940 TGTTATTATGCAAACTACCTTCAGTC 57.736 34.615 0.00 0.00 0.00 3.51
2174 2234 7.335924 TGTTATTATGCAAACTACCTTCAGTCC 59.664 37.037 0.00 0.00 0.00 3.85
2175 2235 3.788227 ATGCAAACTACCTTCAGTCCA 57.212 42.857 0.00 0.00 0.00 4.02
2176 2236 3.788227 TGCAAACTACCTTCAGTCCAT 57.212 42.857 0.00 0.00 0.00 3.41
2177 2237 4.098914 TGCAAACTACCTTCAGTCCATT 57.901 40.909 0.00 0.00 0.00 3.16
2178 2238 4.072131 TGCAAACTACCTTCAGTCCATTC 58.928 43.478 0.00 0.00 0.00 2.67
2179 2239 4.072131 GCAAACTACCTTCAGTCCATTCA 58.928 43.478 0.00 0.00 0.00 2.57
2193 2296 9.753674 TTCAGTCCATTCATAATAGTTTTCCTT 57.246 29.630 0.00 0.00 0.00 3.36
2471 2579 2.216898 CCTATGCTCTTGCCTTAGTGC 58.783 52.381 0.00 0.00 38.71 4.40
2554 2662 7.828508 AAAGCAATTCATGATAGCAGGATTA 57.171 32.000 14.46 0.00 34.43 1.75
2571 2679 9.205513 AGCAGGATTATTTTAATCCACTTCATT 57.794 29.630 22.14 3.59 46.70 2.57
2610 2718 5.940470 ACTTCTAAACGAGGAAGCATGATTT 59.060 36.000 0.00 0.00 41.64 2.17
2978 3089 1.152984 CACCAGACCAACTGCACCA 60.153 57.895 0.00 0.00 44.52 4.17
4218 4504 2.174639 CTGGGTATAATGGGAAGCACCA 59.825 50.000 2.58 0.00 46.24 4.17
4329 4615 7.074653 TGACTTCTGGTGTATTTACCTCTTT 57.925 36.000 0.00 0.00 41.43 2.52
4330 4616 7.514721 TGACTTCTGGTGTATTTACCTCTTTT 58.485 34.615 0.00 0.00 41.43 2.27
4331 4617 7.996644 TGACTTCTGGTGTATTTACCTCTTTTT 59.003 33.333 0.00 0.00 41.43 1.94
4361 4647 9.823647 TTTACATTGTTGTATGTGATTTTTGGT 57.176 25.926 0.00 0.00 39.06 3.67
4370 4656 7.369607 TGTATGTGATTTTTGGTGTGAATCAG 58.630 34.615 0.00 0.00 39.63 2.90
4393 4679 7.224753 TCAGTAATTCAGACTGTTGTGTTCTTC 59.775 37.037 1.59 0.00 43.95 2.87
4399 4685 2.939103 GACTGTTGTGTTCTTCAGTGCT 59.061 45.455 1.41 0.00 40.53 4.40
4445 5032 3.419943 TGCACATGTGATGCTCCTTTAA 58.580 40.909 29.80 0.00 43.77 1.52
4447 5034 4.142337 TGCACATGTGATGCTCCTTTAATG 60.142 41.667 29.80 0.00 43.77 1.90
4485 5072 1.001974 TGCGTTATCTGAGTTGGCACT 59.998 47.619 0.00 0.00 35.17 4.40
4601 5188 0.253044 TGTGCCATTGAGTAGCTCCC 59.747 55.000 0.00 0.00 0.00 4.30
4627 5214 6.657966 TCCATCCTTGCTGATGATCATAATTC 59.342 38.462 8.54 0.00 43.94 2.17
4651 5238 2.627699 CCCAATTGCCACTAAAGTGTGT 59.372 45.455 9.17 0.00 44.21 3.72
4685 5272 2.470057 AGGAGGGAAGGAGATGAGAC 57.530 55.000 0.00 0.00 0.00 3.36
4737 5324 8.964420 ATTACCATGAAGACAAATAAAACGTG 57.036 30.769 0.00 0.00 0.00 4.49
4908 5510 1.888512 CAGCCGGATTATCCCCATTTG 59.111 52.381 5.05 0.00 31.13 2.32
4926 5528 5.647658 CCATTTGTACTCTTGCCTGTGAATA 59.352 40.000 0.00 0.00 0.00 1.75
5211 5827 8.331730 AGTTAAGTTTTGTTGTAACAGACACT 57.668 30.769 12.61 7.48 40.50 3.55
5235 5852 6.096695 TGTTTGGTCTTAGACTTGTTTTTGC 58.903 36.000 12.41 0.00 32.47 3.68
5262 5879 4.021016 GCTAACCAGGGGTATCATGTAGAG 60.021 50.000 0.00 0.00 33.12 2.43
5469 6086 1.673400 AGAGATGTGATCGTCCAGTCG 59.327 52.381 0.00 0.00 0.00 4.18
5588 6205 1.336440 CCAATGCAACTTTCACGTCCA 59.664 47.619 0.00 0.00 0.00 4.02
5592 6209 1.403679 TGCAACTTTCACGTCCAAAGG 59.596 47.619 17.03 5.42 35.49 3.11
5593 6210 1.269051 GCAACTTTCACGTCCAAAGGG 60.269 52.381 17.03 11.37 35.49 3.95
5634 6253 4.177783 TGCGCTAACGTGATAAAATCTCA 58.822 39.130 9.73 0.00 42.83 3.27
5769 6388 2.753029 GAGTGTGGGGCAGAAGCT 59.247 61.111 0.00 0.00 41.70 3.74
5795 6414 3.119173 AGACTGACTGAGATAGCAGCAAC 60.119 47.826 0.00 0.00 39.51 4.17
5805 6424 1.821216 TAGCAGCAACTGGTTTAGCC 58.179 50.000 4.45 0.00 42.44 3.93
5806 6425 0.895559 AGCAGCAACTGGTTTAGCCC 60.896 55.000 0.00 0.00 39.27 5.19
5809 6428 0.187361 AGCAACTGGTTTAGCCCCAA 59.813 50.000 0.00 0.00 36.04 4.12
5813 6432 0.409484 ACTGGTTTAGCCCCAATGCT 59.591 50.000 0.00 0.00 45.38 3.79
5818 6437 2.356741 GGTTTAGCCCCAATGCTCTGTA 60.357 50.000 0.00 0.00 41.68 2.74
5830 6449 2.727777 TGCTCTGTATGTTATCGCGTC 58.272 47.619 5.77 0.00 0.00 5.19
5831 6450 1.709203 GCTCTGTATGTTATCGCGTCG 59.291 52.381 5.77 0.00 0.00 5.12
5833 6452 2.965414 CTCTGTATGTTATCGCGTCGTC 59.035 50.000 5.77 0.00 0.00 4.20
5836 6455 3.103007 TGTATGTTATCGCGTCGTCTTG 58.897 45.455 5.77 0.00 0.00 3.02
5896 6515 1.355971 CTAAAGCGTGCCGTATGTGT 58.644 50.000 0.00 0.00 0.00 3.72
5946 6580 3.565307 TCCGTGTATAGTTATCCCGGTT 58.435 45.455 0.00 0.00 35.59 4.44
5950 6584 4.919754 CGTGTATAGTTATCCCGGTTTAGC 59.080 45.833 0.00 0.00 0.00 3.09
5969 6603 0.457337 CGTAAGGTACCACCACTCGC 60.457 60.000 15.94 0.00 41.95 5.03
5998 6632 0.250124 TTCGGCACCCTGTGTTGTAG 60.250 55.000 0.00 0.00 35.75 2.74
5999 6633 1.070786 CGGCACCCTGTGTTGTAGT 59.929 57.895 0.00 0.00 35.75 2.73
6000 6634 0.319083 CGGCACCCTGTGTTGTAGTA 59.681 55.000 0.00 0.00 35.75 1.82
6001 6635 1.066430 CGGCACCCTGTGTTGTAGTAT 60.066 52.381 0.00 0.00 35.75 2.12
6002 6636 2.166870 CGGCACCCTGTGTTGTAGTATA 59.833 50.000 0.00 0.00 35.75 1.47
6041 6675 1.912001 CAATAATGCCGGCTGTGTTG 58.088 50.000 29.70 23.37 0.00 3.33
6042 6676 0.817013 AATAATGCCGGCTGTGTTGG 59.183 50.000 29.70 0.00 0.00 3.77
6065 6699 2.033602 GCGGGCTAGGTTGTGGTT 59.966 61.111 0.00 0.00 0.00 3.67
6080 6714 4.991153 TGTGGTTTTGTGCTGTAAATGA 57.009 36.364 0.00 0.00 0.00 2.57
6083 6717 4.209080 GTGGTTTTGTGCTGTAAATGAAGC 59.791 41.667 0.00 0.00 39.96 3.86
6085 6719 5.300539 TGGTTTTGTGCTGTAAATGAAGCTA 59.699 36.000 0.00 0.00 40.21 3.32
6087 6721 6.868339 GGTTTTGTGCTGTAAATGAAGCTATT 59.132 34.615 0.00 0.00 40.21 1.73
6090 6724 6.426980 TGTGCTGTAAATGAAGCTATTCTG 57.573 37.500 0.00 0.00 40.21 3.02
6091 6725 5.939883 TGTGCTGTAAATGAAGCTATTCTGT 59.060 36.000 0.00 0.00 40.21 3.41
6092 6726 6.092670 TGTGCTGTAAATGAAGCTATTCTGTC 59.907 38.462 0.00 0.00 40.21 3.51
6098 6732 3.533606 TGAAGCTATTCTGTCTGGCTC 57.466 47.619 0.00 0.00 36.33 4.70
6099 6733 3.102972 TGAAGCTATTCTGTCTGGCTCT 58.897 45.455 0.00 0.00 36.33 4.09
6100 6734 3.118847 TGAAGCTATTCTGTCTGGCTCTG 60.119 47.826 0.00 0.00 36.33 3.35
6101 6735 2.465813 AGCTATTCTGTCTGGCTCTGT 58.534 47.619 0.00 0.00 0.00 3.41
6117 6751 3.529533 CTCTGTTGTTGAGGCATAGAGG 58.470 50.000 0.00 0.00 31.84 3.69
6121 6755 4.264253 TGTTGTTGAGGCATAGAGGAATG 58.736 43.478 0.00 0.00 0.00 2.67
6128 6762 7.833682 TGTTGAGGCATAGAGGAATGAATAAAA 59.166 33.333 0.00 0.00 0.00 1.52
6129 6763 7.807977 TGAGGCATAGAGGAATGAATAAAAC 57.192 36.000 0.00 0.00 0.00 2.43
6130 6764 6.483307 TGAGGCATAGAGGAATGAATAAAACG 59.517 38.462 0.00 0.00 0.00 3.60
6131 6765 6.357367 AGGCATAGAGGAATGAATAAAACGT 58.643 36.000 0.00 0.00 0.00 3.99
6134 6768 7.441458 GGCATAGAGGAATGAATAAAACGTACT 59.559 37.037 0.00 0.00 0.00 2.73
6184 6820 4.672587 TGAACATACTGATCAGTAGCCC 57.327 45.455 32.81 22.98 45.94 5.19
6195 6831 2.752030 TCAGTAGCCCTAGCATTCAGT 58.248 47.619 0.00 0.00 43.56 3.41
6225 6875 3.198635 TCTTGGCCACTTGAATAGAGGAG 59.801 47.826 3.88 0.00 36.79 3.69
6235 6885 7.199766 CACTTGAATAGAGGAGACAGATGTAC 58.800 42.308 0.00 0.00 0.00 2.90
6306 6968 2.589492 GCGGCGTTGAGATCGATGG 61.589 63.158 9.37 0.00 0.00 3.51
6591 7253 1.672356 CAGCCCCAACTCGAAGGTG 60.672 63.158 0.00 0.00 31.21 4.00
6612 7274 1.206831 CGACGTCTCGCTCTTCACA 59.793 57.895 14.70 0.00 31.91 3.58
6620 7282 2.047844 GCTCTTCACAGCCTGCGA 60.048 61.111 0.00 0.00 32.76 5.10
6621 7283 2.386660 GCTCTTCACAGCCTGCGAC 61.387 63.158 0.00 0.00 32.76 5.19
6623 7285 0.601046 CTCTTCACAGCCTGCGACAA 60.601 55.000 0.00 0.00 0.00 3.18
6624 7286 0.035317 TCTTCACAGCCTGCGACAAT 59.965 50.000 0.00 0.00 0.00 2.71
6625 7287 0.167470 CTTCACAGCCTGCGACAATG 59.833 55.000 0.00 0.00 0.00 2.82
6626 7288 1.855213 TTCACAGCCTGCGACAATGC 61.855 55.000 0.00 0.00 0.00 3.56
6627 7289 2.281692 ACAGCCTGCGACAATGCA 60.282 55.556 0.00 0.00 43.95 3.96
6628 7290 1.676635 ACAGCCTGCGACAATGCAT 60.677 52.632 0.00 0.00 45.26 3.96
6629 7291 0.392863 ACAGCCTGCGACAATGCATA 60.393 50.000 0.00 0.00 45.26 3.14
6630 7292 0.949397 CAGCCTGCGACAATGCATAT 59.051 50.000 0.00 0.00 45.26 1.78
6633 7295 1.762419 CCTGCGACAATGCATATTGC 58.238 50.000 13.81 13.81 46.05 3.56
6645 7307 3.788333 GCATATTGCAAAGCCTGAGAA 57.212 42.857 1.71 0.00 44.26 2.87
6646 7308 4.114058 GCATATTGCAAAGCCTGAGAAA 57.886 40.909 1.71 0.00 44.26 2.52
6647 7309 4.690122 GCATATTGCAAAGCCTGAGAAAT 58.310 39.130 1.71 0.00 44.26 2.17
6654 7387 3.719924 CAAAGCCTGAGAAATTTGCACA 58.280 40.909 0.00 0.00 0.00 4.57
6659 7392 3.675228 GCCTGAGAAATTTGCACATGGAG 60.675 47.826 0.00 0.00 0.00 3.86
6660 7393 3.508793 CCTGAGAAATTTGCACATGGAGT 59.491 43.478 0.00 0.00 0.00 3.85
6661 7394 4.021719 CCTGAGAAATTTGCACATGGAGTT 60.022 41.667 0.00 0.00 0.00 3.01
6663 7396 5.531634 TGAGAAATTTGCACATGGAGTTTC 58.468 37.500 0.00 0.00 0.00 2.78
6667 7400 2.798976 TTGCACATGGAGTTTCAAGC 57.201 45.000 0.00 0.00 0.00 4.01
6670 7403 2.429971 TGCACATGGAGTTTCAAGCAAA 59.570 40.909 0.00 0.00 0.00 3.68
6671 7404 3.054878 GCACATGGAGTTTCAAGCAAAG 58.945 45.455 0.00 0.00 0.00 2.77
6672 7405 3.054878 CACATGGAGTTTCAAGCAAAGC 58.945 45.455 0.00 0.00 0.00 3.51
6673 7406 2.961062 ACATGGAGTTTCAAGCAAAGCT 59.039 40.909 0.00 0.00 42.56 3.74
6675 7408 1.682854 TGGAGTTTCAAGCAAAGCTGG 59.317 47.619 0.00 0.00 39.62 4.85
6681 7414 2.865119 TCAAGCAAAGCTGGAGATGA 57.135 45.000 0.00 0.00 39.62 2.92
6685 7418 0.455005 GCAAAGCTGGAGATGAAGGC 59.545 55.000 0.00 0.00 0.00 4.35
6686 7419 1.101331 CAAAGCTGGAGATGAAGGCC 58.899 55.000 0.00 0.00 0.00 5.19
6687 7420 0.700564 AAAGCTGGAGATGAAGGCCA 59.299 50.000 5.01 0.00 0.00 5.36
6689 7422 1.452833 GCTGGAGATGAAGGCCACC 60.453 63.158 5.01 0.00 0.00 4.61
6690 7423 1.919600 GCTGGAGATGAAGGCCACCT 61.920 60.000 5.01 0.00 33.87 4.00
6692 7425 0.329261 TGGAGATGAAGGCCACCTTG 59.671 55.000 5.01 0.00 44.82 3.61
6726 7478 0.969409 GTAGAGGTGGTGGTAGGCGT 60.969 60.000 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.283676 AGGTCCGACGGTGATGGT 60.284 61.111 14.79 0.00 0.00 3.55
31 32 3.792736 GGCCATGCGGTGTCCCTA 61.793 66.667 0.00 0.00 33.28 3.53
55 59 4.508128 TTCGATGGCCCGACGCTC 62.508 66.667 0.00 0.00 38.39 5.03
71 75 0.700564 AGGCAGTGTCCATGATGGTT 59.299 50.000 11.87 0.00 39.03 3.67
101 105 4.853142 CGATGGAGGGGGACGGGA 62.853 72.222 0.00 0.00 0.00 5.14
110 114 1.889829 CTAAGCTAGACCCGATGGAGG 59.110 57.143 0.00 0.00 34.81 4.30
121 125 1.135083 GCGCTGACAACCTAAGCTAGA 60.135 52.381 0.00 0.00 34.72 2.43
126 130 1.298859 GGTGGCGCTGACAACCTAAG 61.299 60.000 7.64 0.00 0.00 2.18
128 132 1.836999 ATGGTGGCGCTGACAACCTA 61.837 55.000 7.64 0.26 0.00 3.08
129 133 3.196207 ATGGTGGCGCTGACAACCT 62.196 57.895 7.64 0.00 0.00 3.50
130 134 2.672996 ATGGTGGCGCTGACAACC 60.673 61.111 7.64 8.50 0.00 3.77
131 135 1.915614 CTGATGGTGGCGCTGACAAC 61.916 60.000 7.64 0.00 0.00 3.32
132 136 1.672030 CTGATGGTGGCGCTGACAA 60.672 57.895 7.64 0.00 0.00 3.18
133 137 2.046988 CTGATGGTGGCGCTGACA 60.047 61.111 7.64 3.89 0.00 3.58
200 204 5.813383 TCTGAGGAAATGAAGAAAGCAGAT 58.187 37.500 0.00 0.00 0.00 2.90
218 222 8.176365 GTGAAATGTGAATCAATCTTCTCTGAG 58.824 37.037 0.00 0.00 0.00 3.35
221 225 7.881751 TCAGTGAAATGTGAATCAATCTTCTCT 59.118 33.333 0.00 0.00 0.00 3.10
298 304 5.868454 AGGCTGCTTTTGGTTCAATTTTAT 58.132 33.333 0.00 0.00 0.00 1.40
304 310 0.667993 CGAGGCTGCTTTTGGTTCAA 59.332 50.000 0.00 0.00 0.00 2.69
340 346 7.435192 GCACATTGGTAATGAAGCTTAATAACC 59.565 37.037 0.00 6.26 41.46 2.85
368 374 9.081204 TCAGTGTGTAACCTAGTAGTTTCATAA 57.919 33.333 0.00 0.00 34.36 1.90
377 383 9.251440 AGTTCAATATCAGTGTGTAACCTAGTA 57.749 33.333 0.00 0.00 34.36 1.82
391 397 6.375455 AGGTGCTACCAAAAGTTCAATATCAG 59.625 38.462 7.86 0.00 41.95 2.90
398 404 2.582052 CCAGGTGCTACCAAAAGTTCA 58.418 47.619 7.86 0.00 41.95 3.18
460 466 6.019559 GGCCGCTAAATGAGAAATTCAAAATC 60.020 38.462 0.00 0.00 39.77 2.17
461 467 5.812127 GGCCGCTAAATGAGAAATTCAAAAT 59.188 36.000 0.00 0.00 39.77 1.82
467 473 3.620488 TCAGGCCGCTAAATGAGAAATT 58.380 40.909 0.00 0.00 0.00 1.82
475 481 1.689273 CTAGTCCTCAGGCCGCTAAAT 59.311 52.381 0.00 0.00 0.00 1.40
493 499 1.074014 GGGAGGGGGCACATACCTA 60.074 63.158 0.00 0.00 34.02 3.08
558 564 9.898152 TCTTCCTTTAAATTGGTTGAAAATTGT 57.102 25.926 0.00 0.00 0.00 2.71
562 568 9.762933 CATCTCTTCCTTTAAATTGGTTGAAAA 57.237 29.630 0.00 0.00 0.00 2.29
563 569 8.367156 CCATCTCTTCCTTTAAATTGGTTGAAA 58.633 33.333 0.00 0.00 0.00 2.69
564 570 7.728083 TCCATCTCTTCCTTTAAATTGGTTGAA 59.272 33.333 0.00 0.00 0.00 2.69
565 571 7.176690 GTCCATCTCTTCCTTTAAATTGGTTGA 59.823 37.037 0.00 0.00 0.00 3.18
566 572 7.315890 GTCCATCTCTTCCTTTAAATTGGTTG 58.684 38.462 0.00 0.00 0.00 3.77
567 573 6.437477 GGTCCATCTCTTCCTTTAAATTGGTT 59.563 38.462 0.00 0.00 0.00 3.67
568 574 5.952347 GGTCCATCTCTTCCTTTAAATTGGT 59.048 40.000 0.00 0.00 0.00 3.67
569 575 6.096001 CAGGTCCATCTCTTCCTTTAAATTGG 59.904 42.308 0.00 0.00 0.00 3.16
570 576 6.405176 GCAGGTCCATCTCTTCCTTTAAATTG 60.405 42.308 0.00 0.00 0.00 2.32
571 577 5.654209 GCAGGTCCATCTCTTCCTTTAAATT 59.346 40.000 0.00 0.00 0.00 1.82
572 578 5.196695 GCAGGTCCATCTCTTCCTTTAAAT 58.803 41.667 0.00 0.00 0.00 1.40
573 579 4.567747 GGCAGGTCCATCTCTTCCTTTAAA 60.568 45.833 0.00 0.00 34.01 1.52
574 580 3.054361 GGCAGGTCCATCTCTTCCTTTAA 60.054 47.826 0.00 0.00 34.01 1.52
575 581 2.505819 GGCAGGTCCATCTCTTCCTTTA 59.494 50.000 0.00 0.00 34.01 1.85
576 582 1.283321 GGCAGGTCCATCTCTTCCTTT 59.717 52.381 0.00 0.00 34.01 3.11
577 583 0.915364 GGCAGGTCCATCTCTTCCTT 59.085 55.000 0.00 0.00 34.01 3.36
578 584 1.333636 CGGCAGGTCCATCTCTTCCT 61.334 60.000 0.00 0.00 34.01 3.36
579 585 1.144936 CGGCAGGTCCATCTCTTCC 59.855 63.158 0.00 0.00 34.01 3.46
580 586 0.755686 ATCGGCAGGTCCATCTCTTC 59.244 55.000 0.00 0.00 34.01 2.87
581 587 0.467384 CATCGGCAGGTCCATCTCTT 59.533 55.000 0.00 0.00 34.01 2.85
582 588 2.037620 GCATCGGCAGGTCCATCTCT 62.038 60.000 0.00 0.00 40.72 3.10
583 589 1.596477 GCATCGGCAGGTCCATCTC 60.596 63.158 0.00 0.00 40.72 2.75
584 590 2.507944 GCATCGGCAGGTCCATCT 59.492 61.111 0.00 0.00 40.72 2.90
585 591 2.592861 GGCATCGGCAGGTCCATC 60.593 66.667 0.00 0.00 43.71 3.51
586 592 4.552365 CGGCATCGGCAGGTCCAT 62.552 66.667 0.00 0.00 43.71 3.41
591 597 4.923942 ATCAGCGGCATCGGCAGG 62.924 66.667 1.45 0.00 43.71 4.85
592 598 3.646976 CATCAGCGGCATCGGCAG 61.647 66.667 1.45 0.00 43.71 4.85
595 601 3.274586 CACCATCAGCGGCATCGG 61.275 66.667 1.45 0.00 36.79 4.18
596 602 1.647545 AAACACCATCAGCGGCATCG 61.648 55.000 1.45 0.00 39.81 3.84
597 603 0.099436 GAAACACCATCAGCGGCATC 59.901 55.000 1.45 0.00 0.00 3.91
598 604 0.608856 TGAAACACCATCAGCGGCAT 60.609 50.000 1.45 0.00 0.00 4.40
599 605 1.228094 TGAAACACCATCAGCGGCA 60.228 52.632 1.45 0.00 0.00 5.69
600 606 1.210155 GTGAAACACCATCAGCGGC 59.790 57.895 0.00 0.00 36.32 6.53
601 607 1.497278 CGTGAAACACCATCAGCGG 59.503 57.895 0.00 0.00 35.74 5.52
602 608 1.154413 GCGTGAAACACCATCAGCG 60.154 57.895 0.00 0.00 35.74 5.18
603 609 1.128692 GTAGCGTGAAACACCATCAGC 59.871 52.381 0.00 0.00 35.74 4.26
604 610 2.688507 AGTAGCGTGAAACACCATCAG 58.311 47.619 0.00 0.00 35.74 2.90
605 611 2.831685 AGTAGCGTGAAACACCATCA 57.168 45.000 0.00 0.00 35.74 3.07
606 612 4.483476 AAAAGTAGCGTGAAACACCATC 57.517 40.909 0.00 0.00 35.74 3.51
607 613 4.911514 AAAAAGTAGCGTGAAACACCAT 57.088 36.364 0.00 0.00 35.74 3.55
630 636 9.807649 GCTTGATGATATACCTGATTTTTGTTT 57.192 29.630 0.00 0.00 0.00 2.83
631 637 8.416329 GGCTTGATGATATACCTGATTTTTGTT 58.584 33.333 0.00 0.00 0.00 2.83
632 638 7.255242 CGGCTTGATGATATACCTGATTTTTGT 60.255 37.037 0.00 0.00 0.00 2.83
633 639 7.080099 CGGCTTGATGATATACCTGATTTTTG 58.920 38.462 0.00 0.00 0.00 2.44
634 640 6.207417 CCGGCTTGATGATATACCTGATTTTT 59.793 38.462 0.00 0.00 0.00 1.94
635 641 5.707298 CCGGCTTGATGATATACCTGATTTT 59.293 40.000 0.00 0.00 0.00 1.82
636 642 5.013079 TCCGGCTTGATGATATACCTGATTT 59.987 40.000 0.00 0.00 0.00 2.17
637 643 4.532126 TCCGGCTTGATGATATACCTGATT 59.468 41.667 0.00 0.00 0.00 2.57
638 644 4.096681 TCCGGCTTGATGATATACCTGAT 58.903 43.478 0.00 0.00 0.00 2.90
639 645 3.506398 TCCGGCTTGATGATATACCTGA 58.494 45.455 0.00 0.00 0.00 3.86
640 646 3.961480 TCCGGCTTGATGATATACCTG 57.039 47.619 0.00 0.00 0.00 4.00
641 647 6.440647 TCTTAATCCGGCTTGATGATATACCT 59.559 38.462 0.00 0.00 0.00 3.08
642 648 6.640518 TCTTAATCCGGCTTGATGATATACC 58.359 40.000 0.00 0.00 0.00 2.73
643 649 8.723942 AATCTTAATCCGGCTTGATGATATAC 57.276 34.615 0.00 0.00 0.00 1.47
644 650 9.817809 GTAATCTTAATCCGGCTTGATGATATA 57.182 33.333 0.00 0.00 0.00 0.86
645 651 8.321353 TGTAATCTTAATCCGGCTTGATGATAT 58.679 33.333 0.00 0.00 0.00 1.63
646 652 7.602644 GTGTAATCTTAATCCGGCTTGATGATA 59.397 37.037 0.00 0.00 0.00 2.15
647 653 6.428159 GTGTAATCTTAATCCGGCTTGATGAT 59.572 38.462 0.00 0.00 0.00 2.45
648 654 5.758296 GTGTAATCTTAATCCGGCTTGATGA 59.242 40.000 0.00 0.00 0.00 2.92
649 655 5.333339 CGTGTAATCTTAATCCGGCTTGATG 60.333 44.000 0.00 0.00 0.00 3.07
650 656 4.750098 CGTGTAATCTTAATCCGGCTTGAT 59.250 41.667 0.00 0.00 0.00 2.57
651 657 4.116961 CGTGTAATCTTAATCCGGCTTGA 58.883 43.478 0.00 0.00 0.00 3.02
652 658 4.116961 TCGTGTAATCTTAATCCGGCTTG 58.883 43.478 0.00 0.00 0.00 4.01
653 659 4.369182 CTCGTGTAATCTTAATCCGGCTT 58.631 43.478 0.00 0.00 0.00 4.35
654 660 3.799232 GCTCGTGTAATCTTAATCCGGCT 60.799 47.826 0.00 0.00 0.00 5.52
655 661 2.475487 GCTCGTGTAATCTTAATCCGGC 59.525 50.000 0.00 0.00 0.00 6.13
656 662 2.724690 CGCTCGTGTAATCTTAATCCGG 59.275 50.000 0.00 0.00 0.00 5.14
657 663 3.369385 ACGCTCGTGTAATCTTAATCCG 58.631 45.455 0.00 0.00 0.00 4.18
658 664 4.802039 TGAACGCTCGTGTAATCTTAATCC 59.198 41.667 0.00 0.00 0.00 3.01
659 665 5.554696 GCTGAACGCTCGTGTAATCTTAATC 60.555 44.000 0.00 0.00 35.14 1.75
660 666 4.267928 GCTGAACGCTCGTGTAATCTTAAT 59.732 41.667 0.00 0.00 35.14 1.40
661 667 3.611113 GCTGAACGCTCGTGTAATCTTAA 59.389 43.478 0.00 0.00 35.14 1.85
662 668 3.176708 GCTGAACGCTCGTGTAATCTTA 58.823 45.455 0.00 0.00 35.14 2.10
663 669 1.993370 GCTGAACGCTCGTGTAATCTT 59.007 47.619 0.00 0.00 35.14 2.40
664 670 1.067846 TGCTGAACGCTCGTGTAATCT 60.068 47.619 0.00 0.00 40.11 2.40
665 671 1.059264 GTGCTGAACGCTCGTGTAATC 59.941 52.381 0.00 0.00 40.11 1.75
666 672 1.068474 GTGCTGAACGCTCGTGTAAT 58.932 50.000 0.00 0.00 40.11 1.89
667 673 0.031585 AGTGCTGAACGCTCGTGTAA 59.968 50.000 0.00 0.00 40.11 2.41
668 674 0.663269 CAGTGCTGAACGCTCGTGTA 60.663 55.000 0.00 0.00 36.85 2.90
669 675 1.951130 CAGTGCTGAACGCTCGTGT 60.951 57.895 0.00 0.00 36.85 4.49
670 676 1.661509 TCAGTGCTGAACGCTCGTG 60.662 57.895 0.00 0.00 36.85 4.35
671 677 1.661821 GTCAGTGCTGAACGCTCGT 60.662 57.895 3.19 0.00 41.85 4.18
672 678 2.710971 CGTCAGTGCTGAACGCTCG 61.711 63.158 3.19 0.00 41.85 5.03
673 679 3.004734 GCGTCAGTGCTGAACGCTC 62.005 63.158 25.99 8.46 46.29 5.03
674 680 3.038417 GCGTCAGTGCTGAACGCT 61.038 61.111 25.99 0.00 46.29 5.07
676 682 2.661537 TGGCGTCAGTGCTGAACG 60.662 61.111 3.19 10.60 41.85 3.95
677 683 2.939022 GTGGCGTCAGTGCTGAAC 59.061 61.111 3.19 0.00 41.85 3.18
678 684 2.661537 CGTGGCGTCAGTGCTGAA 60.662 61.111 3.19 0.00 41.85 3.02
679 685 3.911698 ACGTGGCGTCAGTGCTGA 61.912 61.111 0.00 0.00 33.69 4.26
680 686 3.705638 CACGTGGCGTCAGTGCTG 61.706 66.667 7.95 0.00 38.32 4.41
686 692 4.293648 CACCTCCACGTGGCGTCA 62.294 66.667 30.25 11.81 38.32 4.35
702 708 2.028484 GACACCGCGACAGGTTCA 59.972 61.111 8.23 0.00 43.00 3.18
728 734 2.152297 CTGCCTCGTCAGTGCAGTCT 62.152 60.000 2.69 0.00 45.69 3.24
732 738 4.007644 CCCTGCCTCGTCAGTGCA 62.008 66.667 0.00 0.00 32.32 4.57
762 768 4.118995 TAGGCGGCGTACGTGTGG 62.119 66.667 17.90 4.97 46.52 4.17
794 800 0.601841 ACACGTGTTGATTCGGACCC 60.602 55.000 17.22 0.00 0.00 4.46
800 806 1.069906 GCTGGTGACACGTGTTGATTC 60.070 52.381 24.26 10.11 35.60 2.52
803 809 0.809636 CTGCTGGTGACACGTGTTGA 60.810 55.000 24.26 10.05 35.60 3.18
852 858 2.280389 AGTGCTGTGCTGGTCGTG 60.280 61.111 0.00 0.00 0.00 4.35
937 950 1.143838 TGTCGGATTCGGCCATCTG 59.856 57.895 2.24 4.35 40.82 2.90
1343 1359 6.317140 ACATAACATTTCTACGACCTCGAGTA 59.683 38.462 12.31 0.00 43.02 2.59
1354 1370 9.832445 TTTCCCTAGATCACATAACATTTCTAC 57.168 33.333 0.00 0.00 0.00 2.59
1369 1385 7.214467 TGTTCACACAATTTTTCCCTAGATC 57.786 36.000 0.00 0.00 0.00 2.75
1383 1399 5.269226 GCATCCAGCAAATTGTTCACACAA 61.269 41.667 0.00 0.00 44.63 3.33
1392 1408 2.358582 TGATACCGCATCCAGCAAATTG 59.641 45.455 0.00 0.00 46.13 2.32
1399 1450 3.324117 CATTCTCTGATACCGCATCCAG 58.676 50.000 0.00 0.00 32.09 3.86
1407 1458 8.908786 TGACAATTAATCCATTCTCTGATACC 57.091 34.615 0.00 0.00 0.00 2.73
1412 1463 8.217131 TCACATGACAATTAATCCATTCTCTG 57.783 34.615 0.00 0.00 0.00 3.35
1450 1501 7.808381 CAGATTGATGAATTTCATATGAGCACC 59.192 37.037 11.79 0.00 37.20 5.01
1452 1503 8.349983 CACAGATTGATGAATTTCATATGAGCA 58.650 33.333 11.79 3.15 37.20 4.26
1488 1539 6.364706 TCACGAATGAAAATGTACAAATTGCC 59.635 34.615 0.00 0.00 0.00 4.52
1489 1540 7.332003 TCACGAATGAAAATGTACAAATTGC 57.668 32.000 0.00 0.00 0.00 3.56
1506 1557 6.091169 ACACGATAAACCGTATTTTCACGAAT 59.909 34.615 0.00 0.00 44.69 3.34
1510 1561 6.155691 TGACACGATAAACCGTATTTTCAC 57.844 37.500 0.00 0.00 41.29 3.18
1517 1568 4.517952 TCCTTTGACACGATAAACCGTA 57.482 40.909 0.00 0.00 41.29 4.02
1519 1570 3.682858 ACATCCTTTGACACGATAAACCG 59.317 43.478 0.00 0.00 0.00 4.44
1523 1574 3.684305 CAGCACATCCTTTGACACGATAA 59.316 43.478 0.00 0.00 0.00 1.75
1524 1575 3.056179 TCAGCACATCCTTTGACACGATA 60.056 43.478 0.00 0.00 0.00 2.92
1527 1578 1.511850 TCAGCACATCCTTTGACACG 58.488 50.000 0.00 0.00 0.00 4.49
1528 1579 2.880890 ACTTCAGCACATCCTTTGACAC 59.119 45.455 0.00 0.00 0.00 3.67
1529 1580 2.880268 CACTTCAGCACATCCTTTGACA 59.120 45.455 0.00 0.00 0.00 3.58
1532 1583 1.610038 TGCACTTCAGCACATCCTTTG 59.390 47.619 0.00 0.00 40.11 2.77
1548 1599 3.243267 ACCGTTTTCCTTACAACATGCAC 60.243 43.478 0.00 0.00 0.00 4.57
1559 1615 8.357402 GCATATAATAAATCCACCGTTTTCCTT 58.643 33.333 0.00 0.00 0.00 3.36
1560 1616 7.039993 GGCATATAATAAATCCACCGTTTTCCT 60.040 37.037 0.00 0.00 0.00 3.36
1568 1624 7.834181 ACCATACAGGCATATAATAAATCCACC 59.166 37.037 0.00 0.00 43.14 4.61
1569 1625 8.677300 CACCATACAGGCATATAATAAATCCAC 58.323 37.037 0.00 0.00 43.14 4.02
1570 1626 8.390143 ACACCATACAGGCATATAATAAATCCA 58.610 33.333 0.00 0.00 43.14 3.41
1572 1628 9.231297 ACACACCATACAGGCATATAATAAATC 57.769 33.333 0.00 0.00 43.14 2.17
1576 1632 7.822334 GCTTACACACCATACAGGCATATAATA 59.178 37.037 0.00 0.00 43.14 0.98
1578 1634 5.995282 GCTTACACACCATACAGGCATATAA 59.005 40.000 0.00 0.00 43.14 0.98
1579 1635 5.512404 GGCTTACACACCATACAGGCATATA 60.512 44.000 0.00 0.00 43.14 0.86
1582 1638 2.643551 GCTTACACACCATACAGGCAT 58.356 47.619 0.00 0.00 43.14 4.40
1583 1639 1.339631 GGCTTACACACCATACAGGCA 60.340 52.381 0.00 0.00 43.14 4.75
1584 1640 1.379527 GGCTTACACACCATACAGGC 58.620 55.000 0.00 0.00 43.14 4.85
1588 1647 3.275617 TGATGGGCTTACACACCATAC 57.724 47.619 0.00 0.00 44.62 2.39
1642 1701 4.157289 TCAGGTAGACAAACAGACGGTATC 59.843 45.833 0.00 0.00 0.00 2.24
1683 1742 7.781219 TCTGACCATAAATGATGATCCAACATT 59.219 33.333 0.00 0.00 38.23 2.71
1710 1769 1.547372 TGTGCGGGTTTACTACTCTCC 59.453 52.381 0.00 0.00 0.00 3.71
1711 1770 2.490903 TCTGTGCGGGTTTACTACTCTC 59.509 50.000 0.00 0.00 0.00 3.20
1715 1774 3.308438 TTCTCTGTGCGGGTTTACTAC 57.692 47.619 0.00 0.00 0.00 2.73
1718 1777 5.353123 TGATTAATTCTCTGTGCGGGTTTAC 59.647 40.000 0.00 0.00 0.00 2.01
1733 1792 9.638239 TGCAACAGATAAAAAGGTGATTAATTC 57.362 29.630 0.00 0.00 0.00 2.17
1749 1808 1.621317 TGTTCCGACCTGCAACAGATA 59.379 47.619 0.00 0.00 32.44 1.98
1753 1812 1.234821 GATTGTTCCGACCTGCAACA 58.765 50.000 0.00 0.00 0.00 3.33
1950 2009 2.673368 CAGAGATAACAGTGGCGGAAAC 59.327 50.000 0.00 0.00 0.00 2.78
1955 2014 1.725641 TTGCAGAGATAACAGTGGCG 58.274 50.000 0.00 0.00 0.00 5.69
2051 2110 9.840427 AAACATTGAAACCTCGAGTAAATTATG 57.160 29.630 12.31 10.27 0.00 1.90
2146 2206 9.899661 ACTGAAGGTAGTTTGCATAATAACATA 57.100 29.630 2.62 0.00 0.00 2.29
2147 2207 8.807948 ACTGAAGGTAGTTTGCATAATAACAT 57.192 30.769 2.62 0.00 0.00 2.71
2148 2208 7.335924 GGACTGAAGGTAGTTTGCATAATAACA 59.664 37.037 2.62 0.00 0.00 2.41
2149 2209 7.335924 TGGACTGAAGGTAGTTTGCATAATAAC 59.664 37.037 0.00 0.00 0.00 1.89
2150 2210 7.398829 TGGACTGAAGGTAGTTTGCATAATAA 58.601 34.615 0.00 0.00 0.00 1.40
2151 2211 6.953101 TGGACTGAAGGTAGTTTGCATAATA 58.047 36.000 0.00 0.00 0.00 0.98
2152 2212 5.815581 TGGACTGAAGGTAGTTTGCATAAT 58.184 37.500 0.00 0.00 0.00 1.28
2153 2213 5.235850 TGGACTGAAGGTAGTTTGCATAA 57.764 39.130 0.00 0.00 0.00 1.90
2154 2214 4.901197 TGGACTGAAGGTAGTTTGCATA 57.099 40.909 0.00 0.00 0.00 3.14
2155 2215 3.788227 TGGACTGAAGGTAGTTTGCAT 57.212 42.857 0.00 0.00 0.00 3.96
2156 2216 3.788227 ATGGACTGAAGGTAGTTTGCA 57.212 42.857 0.00 0.00 0.00 4.08
2157 2217 4.072131 TGAATGGACTGAAGGTAGTTTGC 58.928 43.478 0.00 0.00 0.00 3.68
2158 2218 7.921786 TTATGAATGGACTGAAGGTAGTTTG 57.078 36.000 0.00 0.00 0.00 2.93
2159 2219 9.838339 CTATTATGAATGGACTGAAGGTAGTTT 57.162 33.333 0.00 0.00 0.00 2.66
2160 2220 8.993424 ACTATTATGAATGGACTGAAGGTAGTT 58.007 33.333 0.00 0.00 0.00 2.24
2161 2221 8.554490 ACTATTATGAATGGACTGAAGGTAGT 57.446 34.615 0.00 0.00 0.00 2.73
2162 2222 9.838339 AAACTATTATGAATGGACTGAAGGTAG 57.162 33.333 0.00 0.00 0.00 3.18
2164 2224 9.178758 GAAAACTATTATGAATGGACTGAAGGT 57.821 33.333 0.00 0.00 0.00 3.50
2165 2225 8.624776 GGAAAACTATTATGAATGGACTGAAGG 58.375 37.037 0.00 0.00 0.00 3.46
2166 2226 9.401058 AGGAAAACTATTATGAATGGACTGAAG 57.599 33.333 0.00 0.00 0.00 3.02
2167 2227 9.753674 AAGGAAAACTATTATGAATGGACTGAA 57.246 29.630 0.00 0.00 0.00 3.02
2168 2228 9.396022 GAAGGAAAACTATTATGAATGGACTGA 57.604 33.333 0.00 0.00 0.00 3.41
2169 2229 9.177608 TGAAGGAAAACTATTATGAATGGACTG 57.822 33.333 0.00 0.00 0.00 3.51
2170 2230 9.753674 TTGAAGGAAAACTATTATGAATGGACT 57.246 29.630 0.00 0.00 0.00 3.85
2221 2324 7.756614 TGGCTAGTCCTAGATATACTCTTCAA 58.243 38.462 5.52 0.00 35.28 2.69
2341 2448 5.801947 GCAAAGTTATCCAATGCACTAACAG 59.198 40.000 0.00 0.00 37.00 3.16
2471 2579 5.618195 GCAATTTCAATGCAAATGACTTGGG 60.618 40.000 18.77 7.39 43.29 4.12
2618 2726 9.357161 ACTTGTGGTGTATTTACCTCAATAAAA 57.643 29.630 11.41 0.00 46.81 1.52
2619 2727 8.927675 ACTTGTGGTGTATTTACCTCAATAAA 57.072 30.769 11.41 0.00 46.81 1.40
2620 2728 8.158132 TGACTTGTGGTGTATTTACCTCAATAA 58.842 33.333 11.41 1.12 46.81 1.40
2621 2729 7.604927 GTGACTTGTGGTGTATTTACCTCAATA 59.395 37.037 11.41 2.02 46.81 1.90
2978 3089 8.751302 AAGATAATTTTTCCGTTAAACGCAAT 57.249 26.923 0.00 0.00 40.91 3.56
4218 4504 4.585955 ACTTGTCGCCTCGTTCATATAT 57.414 40.909 0.00 0.00 0.00 0.86
4273 4559 1.831389 CTGACGGTCAGTTTGGTGCG 61.831 60.000 26.22 2.24 39.58 5.34
4292 4578 5.064452 CACCAGAAGTCATAGAACTTGCATC 59.936 44.000 0.00 0.00 39.55 3.91
4345 4631 7.014134 ACTGATTCACACCAAAAATCACATACA 59.986 33.333 0.00 0.00 35.17 2.29
4359 4645 5.934625 ACAGTCTGAATTACTGATTCACACC 59.065 40.000 12.70 0.00 47.00 4.16
4361 4647 6.992123 ACAACAGTCTGAATTACTGATTCACA 59.008 34.615 12.70 0.00 47.00 3.58
4370 4656 7.011482 ACTGAAGAACACAACAGTCTGAATTAC 59.989 37.037 6.91 0.00 38.95 1.89
4393 4679 1.959042 AACTGGAGAACACAGCACTG 58.041 50.000 0.00 0.00 39.55 3.66
4399 4685 6.188407 AGATAGCTAGTAACTGGAGAACACA 58.812 40.000 0.00 0.00 0.00 3.72
4447 5034 3.613737 ACGCATGATATGTTGCAAAAAGC 59.386 39.130 0.00 0.00 45.96 3.51
4463 5050 2.009051 TGCCAACTCAGATAACGCATG 58.991 47.619 0.00 0.00 0.00 4.06
4485 5072 9.942850 TGTAACATTCTTTCAATCATCTACTCA 57.057 29.630 0.00 0.00 0.00 3.41
4601 5188 3.487120 TGATCATCAGCAAGGATGGAG 57.513 47.619 11.55 0.00 43.82 3.86
4627 5214 2.493278 CACTTTAGTGGCAATTGGGGAG 59.507 50.000 7.72 0.00 42.10 4.30
4651 5238 4.425772 TCCCTCCTTTGTCTACTCAATGA 58.574 43.478 0.00 0.00 0.00 2.57
4685 5272 3.631686 CACTCCTCTACATCTCTCCACAG 59.368 52.174 0.00 0.00 0.00 3.66
4908 5510 7.661968 TGATCTATATTCACAGGCAAGAGTAC 58.338 38.462 0.00 0.00 0.00 2.73
4926 5528 5.867903 CAGAGTCCCTGTTTCTGATCTAT 57.132 43.478 0.00 0.00 40.54 1.98
5211 5827 6.096695 GCAAAAACAAGTCTAAGACCAAACA 58.903 36.000 0.00 0.00 32.18 2.83
5235 5852 2.972348 TGATACCCCTGGTTAGCTAGG 58.028 52.381 1.63 1.63 42.37 3.02
5262 5879 4.408182 TTCAAGGACTAGCTAAGATGCC 57.592 45.455 0.00 0.00 0.00 4.40
5561 6178 5.065218 ACGTGAAAGTTGCATTGGAGATATC 59.935 40.000 0.00 0.00 0.00 1.63
5634 6253 1.492176 AGAATCCGATCCAACCTGCAT 59.508 47.619 0.00 0.00 0.00 3.96
5749 6368 3.612247 CTTCTGCCCCACACTCCGG 62.612 68.421 0.00 0.00 0.00 5.14
5769 6388 3.690460 TGCTATCTCAGTCAGTCTGTGA 58.310 45.455 0.00 2.53 46.18 3.58
5795 6414 1.106285 GAGCATTGGGGCTAAACCAG 58.894 55.000 0.00 0.00 45.99 4.00
5805 6424 3.187227 GCGATAACATACAGAGCATTGGG 59.813 47.826 0.00 0.00 0.00 4.12
5806 6425 3.120889 CGCGATAACATACAGAGCATTGG 60.121 47.826 0.00 0.00 0.00 3.16
5809 6428 3.309388 GACGCGATAACATACAGAGCAT 58.691 45.455 15.93 0.00 0.00 3.79
5813 6432 2.610833 AGACGACGCGATAACATACAGA 59.389 45.455 15.93 0.00 0.00 3.41
5818 6437 0.921347 GCAAGACGACGCGATAACAT 59.079 50.000 15.93 0.00 0.00 2.71
5896 6515 8.568794 CATGTCCTCTACTCGAAATAAGTGATA 58.431 37.037 0.00 0.00 0.00 2.15
5946 6580 2.493278 GAGTGGTGGTACCTTACGCTAA 59.507 50.000 14.36 0.00 39.58 3.09
5950 6584 0.457337 GCGAGTGGTGGTACCTTACG 60.457 60.000 14.36 10.97 39.58 3.18
5959 6593 3.636231 TTCAGGGGCGAGTGGTGG 61.636 66.667 0.00 0.00 0.00 4.61
5961 6595 1.705997 AAAGTTCAGGGGCGAGTGGT 61.706 55.000 0.00 0.00 0.00 4.16
5964 6598 1.004918 CGAAAGTTCAGGGGCGAGT 60.005 57.895 0.00 0.00 0.00 4.18
5965 6599 1.741770 CCGAAAGTTCAGGGGCGAG 60.742 63.158 0.00 0.00 0.00 5.03
5966 6600 2.345991 CCGAAAGTTCAGGGGCGA 59.654 61.111 0.00 0.00 0.00 5.54
5969 6603 1.971695 GGTGCCGAAAGTTCAGGGG 60.972 63.158 0.00 0.00 0.00 4.79
5998 6632 9.903682 TTGCCTTATTCGTTACTATGAGTATAC 57.096 33.333 0.00 0.00 29.64 1.47
6002 6636 9.998106 ATTATTGCCTTATTCGTTACTATGAGT 57.002 29.630 0.00 0.00 0.00 3.41
6039 6673 4.451150 CTAGCCCGCACTCGCCAA 62.451 66.667 0.00 0.00 33.11 4.52
6042 6676 4.452733 AACCTAGCCCGCACTCGC 62.453 66.667 0.00 0.00 0.00 5.03
6043 6677 2.509336 CAACCTAGCCCGCACTCG 60.509 66.667 0.00 0.00 0.00 4.18
6065 6699 7.040478 ACAGAATAGCTTCATTTACAGCACAAA 60.040 33.333 0.00 0.00 38.61 2.83
6080 6714 2.836981 ACAGAGCCAGACAGAATAGCTT 59.163 45.455 0.00 0.00 32.97 3.74
6083 6717 4.199432 ACAACAGAGCCAGACAGAATAG 57.801 45.455 0.00 0.00 0.00 1.73
6085 6719 3.144506 CAACAACAGAGCCAGACAGAAT 58.855 45.455 0.00 0.00 0.00 2.40
6087 6721 1.762370 TCAACAACAGAGCCAGACAGA 59.238 47.619 0.00 0.00 0.00 3.41
6090 6724 1.517242 CCTCAACAACAGAGCCAGAC 58.483 55.000 0.00 0.00 0.00 3.51
6091 6725 0.250467 GCCTCAACAACAGAGCCAGA 60.250 55.000 0.00 0.00 0.00 3.86
6092 6726 0.535780 TGCCTCAACAACAGAGCCAG 60.536 55.000 0.00 0.00 0.00 4.85
6098 6732 3.616956 TCCTCTATGCCTCAACAACAG 57.383 47.619 0.00 0.00 0.00 3.16
6099 6733 4.019411 TCATTCCTCTATGCCTCAACAACA 60.019 41.667 0.00 0.00 0.00 3.33
6100 6734 4.517285 TCATTCCTCTATGCCTCAACAAC 58.483 43.478 0.00 0.00 0.00 3.32
6101 6735 4.842531 TCATTCCTCTATGCCTCAACAA 57.157 40.909 0.00 0.00 0.00 2.83
6117 6751 9.737025 GACAACTACAGTACGTTTTATTCATTC 57.263 33.333 0.00 0.00 0.00 2.67
6128 6762 7.724305 AATGAAATTGACAACTACAGTACGT 57.276 32.000 0.00 0.00 33.44 3.57
6129 6763 8.495949 AGAAATGAAATTGACAACTACAGTACG 58.504 33.333 0.00 0.00 36.10 3.67
6130 6764 9.599322 CAGAAATGAAATTGACAACTACAGTAC 57.401 33.333 0.00 0.00 36.10 2.73
6131 6765 8.783093 CCAGAAATGAAATTGACAACTACAGTA 58.217 33.333 0.00 0.00 36.10 2.74
6134 6768 7.581213 ACCAGAAATGAAATTGACAACTACA 57.419 32.000 0.00 0.00 36.10 2.74
6175 6811 2.695666 GACTGAATGCTAGGGCTACTGA 59.304 50.000 0.00 0.00 39.59 3.41
6184 6820 2.170187 AGAAGCCAGGACTGAATGCTAG 59.830 50.000 0.00 0.00 0.00 3.42
6225 6875 6.319152 AGTCTACCTGTGTATGTACATCTGTC 59.681 42.308 12.68 2.78 38.63 3.51
6235 6885 3.014623 TCGGTCAGTCTACCTGTGTATG 58.985 50.000 0.00 0.00 42.19 2.39
6492 7154 3.267233 ATGAAGGGGCTGGGCACA 61.267 61.111 0.00 0.00 30.93 4.57
6591 7253 4.117661 AAGAGCGAGACGTCGGGC 62.118 66.667 21.38 21.38 46.91 6.13
6612 7274 1.335810 CAATATGCATTGTCGCAGGCT 59.664 47.619 3.54 0.00 46.99 4.58
6625 7287 3.788333 TTCTCAGGCTTTGCAATATGC 57.212 42.857 0.00 5.49 45.29 3.14
6626 7288 7.000575 CAAATTTCTCAGGCTTTGCAATATG 57.999 36.000 0.00 0.00 0.00 1.78
6633 7295 3.719924 TGTGCAAATTTCTCAGGCTTTG 58.280 40.909 0.00 0.00 0.00 2.77
6634 7296 4.312443 CATGTGCAAATTTCTCAGGCTTT 58.688 39.130 0.00 0.00 0.00 3.51
6635 7297 3.306502 CCATGTGCAAATTTCTCAGGCTT 60.307 43.478 0.00 0.00 0.00 4.35
6636 7298 2.232941 CCATGTGCAAATTTCTCAGGCT 59.767 45.455 0.00 0.00 0.00 4.58
6637 7299 2.231964 TCCATGTGCAAATTTCTCAGGC 59.768 45.455 0.00 0.00 0.00 4.85
6639 7301 4.778534 ACTCCATGTGCAAATTTCTCAG 57.221 40.909 0.00 0.00 0.00 3.35
6641 7303 5.531634 TGAAACTCCATGTGCAAATTTCTC 58.468 37.500 0.00 0.00 0.00 2.87
6642 7304 5.534207 TGAAACTCCATGTGCAAATTTCT 57.466 34.783 0.00 0.00 0.00 2.52
6643 7305 5.333568 GCTTGAAACTCCATGTGCAAATTTC 60.334 40.000 0.00 0.00 0.00 2.17
6645 7307 4.060205 GCTTGAAACTCCATGTGCAAATT 58.940 39.130 0.00 0.00 0.00 1.82
6646 7308 3.069872 TGCTTGAAACTCCATGTGCAAAT 59.930 39.130 0.00 0.00 0.00 2.32
6647 7309 2.429971 TGCTTGAAACTCCATGTGCAAA 59.570 40.909 0.00 0.00 0.00 3.68
6651 7384 3.054878 GCTTTGCTTGAAACTCCATGTG 58.945 45.455 0.00 0.00 0.00 3.21
6654 7387 2.298163 CCAGCTTTGCTTGAAACTCCAT 59.702 45.455 0.00 0.00 36.40 3.41
6659 7392 3.254166 TCATCTCCAGCTTTGCTTGAAAC 59.746 43.478 0.00 0.00 36.40 2.78
6660 7393 3.489355 TCATCTCCAGCTTTGCTTGAAA 58.511 40.909 0.00 0.00 36.40 2.69
6661 7394 3.144657 TCATCTCCAGCTTTGCTTGAA 57.855 42.857 0.00 0.00 36.40 2.69
6663 7396 2.163815 CCTTCATCTCCAGCTTTGCTTG 59.836 50.000 0.00 0.00 36.40 4.01
6667 7400 1.101331 GGCCTTCATCTCCAGCTTTG 58.899 55.000 0.00 0.00 0.00 2.77
6670 7403 1.606531 GTGGCCTTCATCTCCAGCT 59.393 57.895 3.32 0.00 0.00 4.24
6671 7404 1.452833 GGTGGCCTTCATCTCCAGC 60.453 63.158 3.32 0.00 40.53 4.85
6672 7405 0.622665 AAGGTGGCCTTCATCTCCAG 59.377 55.000 3.32 0.00 40.17 3.86
6673 7406 0.329261 CAAGGTGGCCTTCATCTCCA 59.671 55.000 3.32 0.00 42.67 3.86
6675 7408 1.680249 GGACAAGGTGGCCTTCATCTC 60.680 57.143 3.32 0.00 44.12 2.75
6685 7418 2.352805 GCTCCCTGGACAAGGTGG 59.647 66.667 0.00 0.00 45.78 4.61
6686 7419 2.046892 CGCTCCCTGGACAAGGTG 60.047 66.667 0.00 0.00 45.78 4.00
6687 7420 4.021925 GCGCTCCCTGGACAAGGT 62.022 66.667 0.00 0.00 45.78 3.50
6710 7462 2.577593 GACGCCTACCACCACCTC 59.422 66.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.