Multiple sequence alignment - TraesCS3A01G484100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G484100 chr3A 100.000 5704 0 0 1 5704 714005931 714000228 0.000000e+00 10534
1 TraesCS3A01G484100 chr3A 89.286 196 12 4 5465 5659 713995844 713995657 2.660000e-58 237
2 TraesCS3A01G484100 chr3A 79.359 281 32 13 5434 5699 713963871 713963602 2.110000e-39 174
3 TraesCS3A01G484100 chr3A 77.338 278 42 15 243 513 179347925 179347662 1.660000e-30 145
4 TraesCS3A01G484100 chr3A 81.955 133 11 3 5579 5699 713949767 713949636 3.640000e-17 100
5 TraesCS3A01G484100 chr3D 89.884 2422 153 42 3319 5704 578618700 578621065 0.000000e+00 3031
6 TraesCS3A01G484100 chr3D 88.345 2042 149 39 892 2866 578615856 578617875 0.000000e+00 2370
7 TraesCS3A01G484100 chr3D 89.167 1117 76 24 1472 2573 578314799 578313713 0.000000e+00 1351
8 TraesCS3A01G484100 chr3D 86.997 1169 109 21 3319 4478 578312726 578311592 0.000000e+00 1277
9 TraesCS3A01G484100 chr3D 90.638 737 48 12 2598 3323 578313717 578312991 0.000000e+00 959
10 TraesCS3A01G484100 chr3D 93.662 426 17 3 2899 3323 578618019 578618435 3.750000e-176 628
11 TraesCS3A01G484100 chr3D 83.051 708 63 20 4982 5659 578648635 578649315 1.770000e-164 590
12 TraesCS3A01G484100 chr3D 84.342 281 15 6 5434 5693 578282736 578282464 1.230000e-61 248
13 TraesCS3A01G484100 chr3D 94.161 137 8 0 672 808 578615633 578615769 5.790000e-50 209
14 TraesCS3A01G484100 chr3D 78.246 285 30 10 5434 5697 578273521 578273248 2.750000e-33 154
15 TraesCS3A01G484100 chr3B 94.414 1808 84 9 3319 5119 771796658 771794861 0.000000e+00 2763
16 TraesCS3A01G484100 chr3B 90.744 1815 118 27 1532 3323 771798710 771796923 0.000000e+00 2375
17 TraesCS3A01G484100 chr3B 89.155 627 38 11 720 1318 771799635 771799011 0.000000e+00 754
18 TraesCS3A01G484100 chr3B 88.803 518 22 7 5207 5704 771794405 771793904 2.270000e-168 603
19 TraesCS3A01G484100 chr3B 79.973 749 101 35 1 727 771800513 771799792 1.830000e-139 507
20 TraesCS3A01G484100 chr3B 83.660 459 37 11 5267 5703 771769685 771769243 1.150000e-106 398
21 TraesCS3A01G484100 chr3B 86.723 354 26 6 4936 5274 771775102 771774755 1.940000e-99 374
22 TraesCS3A01G484100 chr3B 83.673 245 20 5 5471 5703 771789529 771789293 4.480000e-51 213
23 TraesCS3A01G484100 chr6D 80.420 143 19 8 334 473 262606308 262606172 3.640000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G484100 chr3A 714000228 714005931 5703 True 10534.000000 10534 100.0000 1 5704 1 chr3A.!!$R5 5703
1 TraesCS3A01G484100 chr3D 578615633 578621065 5432 False 1559.500000 3031 91.5130 672 5704 4 chr3D.!!$F2 5032
2 TraesCS3A01G484100 chr3D 578311592 578314799 3207 True 1195.666667 1351 88.9340 1472 4478 3 chr3D.!!$R3 3006
3 TraesCS3A01G484100 chr3D 578648635 578649315 680 False 590.000000 590 83.0510 4982 5659 1 chr3D.!!$F1 677
4 TraesCS3A01G484100 chr3B 771793904 771800513 6609 True 1400.400000 2763 88.6178 1 5704 5 chr3B.!!$R4 5703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.531200 GCACCTCGCTAACCACTAGT 59.469 55.0 0.00 0.0 37.77 2.57 F
947 1195 1.156736 AGATTTGCCAGTTCGTTCCG 58.843 50.0 0.00 0.0 0.00 4.30 F
1282 1533 0.465460 TCTTGTCAACCACAGGTGCC 60.465 55.0 0.00 0.0 35.34 5.01 F
2714 3135 0.534412 AGCAGCTGTAGGTAGCAGTG 59.466 55.0 16.64 0.0 46.07 3.66 F
3608 4422 0.823460 CTCAGCTCCTTGAGACCCTC 59.177 60.0 0.00 0.0 45.95 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1484 0.109179 CGACCGGAACCGACAATACA 60.109 55.000 9.46 0.00 42.83 2.29 R
2692 3113 1.411977 CTGCTACCTACAGCTGCTCAT 59.588 52.381 15.27 0.00 42.30 2.90 R
2973 3508 4.065088 CGAGAAGGATTTCAACCAGTTGA 58.935 43.478 9.12 9.12 46.72 3.18 R
4053 4874 1.002888 AGCAGCATCATAATCCCCGAG 59.997 52.381 0.00 0.00 0.00 4.63 R
4867 5690 0.031178 GTGCATCGATCCCAATTGCC 59.969 55.000 0.00 0.00 32.39 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.679505 TCTAAGTTCACAGCGCACCT 59.320 50.000 11.47 0.00 0.00 4.00
56 57 1.071605 CTAAGTTCACAGCGCACCTC 58.928 55.000 11.47 0.00 0.00 3.85
69 70 0.531200 GCACCTCGCTAACCACTAGT 59.469 55.000 0.00 0.00 37.77 2.57
91 92 3.003585 TGCCATCGCAAACTTATGCATAG 59.996 43.478 6.50 4.29 46.76 2.23
101 102 7.538678 CGCAAACTTATGCATAGAAACTTCTTT 59.461 33.333 6.50 0.00 46.76 2.52
106 107 5.904362 ATGCATAGAAACTTCTTTGGTCC 57.096 39.130 0.00 0.00 36.94 4.46
120 121 7.936847 ACTTCTTTGGTCCTTTTTGTTCTTTTT 59.063 29.630 0.00 0.00 0.00 1.94
122 123 7.676004 TCTTTGGTCCTTTTTGTTCTTTTTCT 58.324 30.769 0.00 0.00 0.00 2.52
296 307 7.549134 GGGAACTCTTTTCAAAATTTGTGAACT 59.451 33.333 5.56 0.00 34.78 3.01
356 367 9.571810 TCCATGAACTTATTTTCAAATTCGATG 57.428 29.630 0.00 0.00 38.95 3.84
357 368 9.571810 CCATGAACTTATTTTCAAATTCGATGA 57.428 29.630 0.00 0.00 38.95 2.92
386 397 9.664332 TTTTCTCAAATTCAATGAACCTTTTCA 57.336 25.926 0.00 0.00 45.93 2.69
682 732 3.495670 AAAAACATTAATAGCGCGGCA 57.504 38.095 8.83 0.00 0.00 5.69
684 734 3.708563 AAACATTAATAGCGCGGCAAT 57.291 38.095 8.83 0.00 0.00 3.56
700 750 5.616645 CGCGGCAATATTGTTATTATGCAGA 60.617 40.000 16.61 0.00 0.00 4.26
704 754 7.575532 CGGCAATATTGTTATTATGCAGATGGT 60.576 37.037 16.61 0.00 0.00 3.55
756 969 5.335127 GCATATAACTTCAGTGGTTTGCAG 58.665 41.667 0.00 0.00 0.00 4.41
767 980 3.066760 AGTGGTTTGCAGAACACTTAAGC 59.933 43.478 21.50 3.99 41.03 3.09
812 1025 2.893489 ACCTGAAGAGACCATTTTTGCC 59.107 45.455 0.00 0.00 0.00 4.52
813 1026 3.160269 CCTGAAGAGACCATTTTTGCCT 58.840 45.455 0.00 0.00 0.00 4.75
860 1073 3.569049 CTCGTTTCGTGAGCCGGGT 62.569 63.158 5.45 5.45 37.11 5.28
888 1107 2.234613 TTTTTCACTCGCAGCTCCG 58.765 52.632 0.00 0.00 0.00 4.63
889 1108 1.227999 TTTTTCACTCGCAGCTCCGG 61.228 55.000 0.00 0.00 0.00 5.14
947 1195 1.156736 AGATTTGCCAGTTCGTTCCG 58.843 50.000 0.00 0.00 0.00 4.30
975 1223 1.746991 CCTGCTTTCCTTCCTCGCC 60.747 63.158 0.00 0.00 0.00 5.54
1099 1350 3.680786 CGTCCGTGCCCTCTCACA 61.681 66.667 0.00 0.00 36.80 3.58
1230 1481 3.095347 GCTAGGGTGGGAGAAGCGG 62.095 68.421 0.00 0.00 0.00 5.52
1233 1484 2.741878 TAGGGTGGGAGAAGCGGTGT 62.742 60.000 0.00 0.00 0.00 4.16
1234 1485 2.358737 GGTGGGAGAAGCGGTGTG 60.359 66.667 0.00 0.00 0.00 3.82
1282 1533 0.465460 TCTTGTCAACCACAGGTGCC 60.465 55.000 0.00 0.00 35.34 5.01
1291 1542 1.968017 CACAGGTGCCGCTGATGTT 60.968 57.895 0.00 0.00 0.00 2.71
1295 1546 2.629656 GGTGCCGCTGATGTTTGCT 61.630 57.895 0.00 0.00 0.00 3.91
1344 1601 9.914834 TTTGTGTTATATATAAAAGGCTCCAGT 57.085 29.630 6.75 0.00 0.00 4.00
1345 1602 9.914834 TTGTGTTATATATAAAAGGCTCCAGTT 57.085 29.630 6.75 0.00 0.00 3.16
1346 1603 9.555727 TGTGTTATATATAAAAGGCTCCAGTTC 57.444 33.333 6.75 0.00 0.00 3.01
1347 1604 9.780186 GTGTTATATATAAAAGGCTCCAGTTCT 57.220 33.333 6.75 0.00 0.00 3.01
1348 1605 9.998106 TGTTATATATAAAAGGCTCCAGTTCTC 57.002 33.333 6.75 0.00 0.00 2.87
1349 1606 9.438228 GTTATATATAAAAGGCTCCAGTTCTCC 57.562 37.037 6.75 0.00 0.00 3.71
1350 1607 7.880265 ATATATAAAAGGCTCCAGTTCTCCT 57.120 36.000 0.00 0.00 0.00 3.69
1351 1608 4.936685 ATAAAAGGCTCCAGTTCTCCTT 57.063 40.909 0.00 0.00 40.39 3.36
1353 1610 2.869101 AAGGCTCCAGTTCTCCTTTC 57.131 50.000 0.00 0.00 35.54 2.62
1354 1611 2.037385 AGGCTCCAGTTCTCCTTTCT 57.963 50.000 0.00 0.00 0.00 2.52
1355 1612 1.905894 AGGCTCCAGTTCTCCTTTCTC 59.094 52.381 0.00 0.00 0.00 2.87
1356 1613 1.065782 GGCTCCAGTTCTCCTTTCTCC 60.066 57.143 0.00 0.00 0.00 3.71
1357 1614 1.905894 GCTCCAGTTCTCCTTTCTCCT 59.094 52.381 0.00 0.00 0.00 3.69
1358 1615 2.304470 GCTCCAGTTCTCCTTTCTCCTT 59.696 50.000 0.00 0.00 0.00 3.36
1359 1616 3.867984 GCTCCAGTTCTCCTTTCTCCTTG 60.868 52.174 0.00 0.00 0.00 3.61
1360 1617 3.318313 TCCAGTTCTCCTTTCTCCTTGT 58.682 45.455 0.00 0.00 0.00 3.16
1361 1618 4.489737 TCCAGTTCTCCTTTCTCCTTGTA 58.510 43.478 0.00 0.00 0.00 2.41
1379 1636 7.182060 TCCTTGTAAAAGGCTCCAGATTTATT 58.818 34.615 6.84 0.00 39.80 1.40
1456 1745 6.661377 TGCCTATTATTGTCAAAAACCAGCTA 59.339 34.615 0.00 0.00 0.00 3.32
1480 1812 3.121696 GCGCGAAAATCAAACTGTCTTTG 60.122 43.478 12.10 0.00 0.00 2.77
1571 1968 2.826128 TGATGCTCTCCGAAGTTACAGT 59.174 45.455 0.00 0.00 0.00 3.55
1663 2062 6.931790 ATGCATCTACTCAGGAATCTGTAT 57.068 37.500 0.00 0.00 41.59 2.29
1677 2076 8.896744 CAGGAATCTGTATAAAATTTCAGCTGA 58.103 33.333 13.74 13.74 36.30 4.26
1678 2077 9.638176 AGGAATCTGTATAAAATTTCAGCTGAT 57.362 29.630 19.04 4.41 0.00 2.90
1919 2318 6.156519 CCAAAGGTTTATAGTGCTTTTCCAC 58.843 40.000 0.00 0.00 35.98 4.02
1921 2320 7.378181 CAAAGGTTTATAGTGCTTTTCCACAT 58.622 34.615 0.00 0.00 38.18 3.21
1933 2332 5.879223 TGCTTTTCCACATGTTGTTCAAAAT 59.121 32.000 0.00 0.00 0.00 1.82
1983 2382 7.061634 GCGTCGTTATCATTTAATTACCTGTC 58.938 38.462 0.00 0.00 0.00 3.51
2031 2441 5.250313 TGGCCCACAGGAAAATTCAAATAAT 59.750 36.000 0.00 0.00 33.47 1.28
2037 2448 9.362539 CCACAGGAAAATTCAAATAATCTTCTG 57.637 33.333 0.00 0.00 0.00 3.02
2048 2459 8.450578 TCAAATAATCTTCTGTGTTCTGTTGT 57.549 30.769 0.00 0.00 0.00 3.32
2059 2470 6.147656 TCTGTGTTCTGTTGTTGTATGCTATG 59.852 38.462 0.00 0.00 0.00 2.23
2061 2472 6.262049 TGTGTTCTGTTGTTGTATGCTATGTT 59.738 34.615 0.00 0.00 0.00 2.71
2067 2478 5.009510 TGTTGTTGTATGCTATGTTGCAGTT 59.990 36.000 0.00 0.00 46.71 3.16
2081 2492 4.072131 GTTGCAGTTCCCTATTTCTGTCA 58.928 43.478 0.00 0.00 0.00 3.58
2087 2498 3.616956 TCCCTATTTCTGTCAGCAGTG 57.383 47.619 0.00 0.00 43.05 3.66
2109 2520 8.434661 CAGTGACAATTACAAATGTTATTTGGC 58.565 33.333 16.08 0.00 33.92 4.52
2139 2550 2.299582 TGGGAATTTTGATGCACACCTG 59.700 45.455 0.00 0.00 0.00 4.00
2184 2595 4.629634 TGTATGATGCGTTCAACTGGTTAG 59.370 41.667 0.00 0.00 38.03 2.34
2201 2612 3.211045 GTTAGTTGAGTGGCAAAGTCCA 58.789 45.455 0.00 0.00 38.44 4.02
2243 2662 3.750652 ACATCATGTGTTGCGTGTTGATA 59.249 39.130 0.00 0.00 38.01 2.15
2269 2688 7.984422 TGATTGCTATCTTTCTTTTGACTGA 57.016 32.000 9.55 0.00 0.00 3.41
2356 2775 8.526147 CATGTTTGTCTCCTTGGATTTCTAATT 58.474 33.333 0.00 0.00 0.00 1.40
2357 2776 8.110860 TGTTTGTCTCCTTGGATTTCTAATTC 57.889 34.615 0.00 0.00 0.00 2.17
2414 2833 8.870160 TTTCCTGTTTAACAAATCACTGATTG 57.130 30.769 4.99 3.07 32.14 2.67
2452 2871 6.098266 AGGGTAGAATGGTTGAAATATTTGGC 59.902 38.462 5.17 0.00 0.00 4.52
2579 3000 7.630924 CAATTATCAAATTGTCTACCGTCCTC 58.369 38.462 3.26 0.00 44.62 3.71
2632 3053 6.742109 ACAGAAATCCTTGACAACATGAAAG 58.258 36.000 0.00 0.00 0.00 2.62
2635 3056 5.796424 AATCCTTGACAACATGAAAGCTT 57.204 34.783 0.00 0.00 0.00 3.74
2658 3079 7.707893 GCTTTGAATGGTTATAATCTTGTGCAT 59.292 33.333 0.00 0.00 0.00 3.96
2666 3087 7.395772 TGGTTATAATCTTGTGCATTCCTGAAA 59.604 33.333 0.00 0.00 0.00 2.69
2705 3126 7.719778 TTTGTATATTCATGAGCAGCTGTAG 57.280 36.000 16.64 1.22 0.00 2.74
2712 3133 0.820226 TGAGCAGCTGTAGGTAGCAG 59.180 55.000 16.64 0.00 46.07 4.24
2714 3135 0.534412 AGCAGCTGTAGGTAGCAGTG 59.466 55.000 16.64 0.00 46.07 3.66
2731 3152 3.813166 GCAGTGTTAGTAACCTTTCAGCA 59.187 43.478 10.51 0.00 0.00 4.41
2768 3189 7.094205 GGATCTTCAACTTTAAGAATGGCTTCA 60.094 37.037 0.00 0.00 36.60 3.02
2777 3198 7.986889 ACTTTAAGAATGGCTTCAACATTTGTT 59.013 29.630 0.00 0.00 38.57 2.83
2897 3425 2.745968 TGGAAACACTGGAGGCTTTTT 58.254 42.857 0.00 0.00 33.40 1.94
2927 3462 2.787473 TTGCTACAATGCTGGCTACT 57.213 45.000 0.00 0.00 0.00 2.57
2929 3464 3.904800 TGCTACAATGCTGGCTACTAA 57.095 42.857 0.00 0.00 0.00 2.24
2930 3465 3.531538 TGCTACAATGCTGGCTACTAAC 58.468 45.455 0.00 0.00 0.00 2.34
2931 3466 3.197766 TGCTACAATGCTGGCTACTAACT 59.802 43.478 0.00 0.00 0.00 2.24
2932 3467 4.404394 TGCTACAATGCTGGCTACTAACTA 59.596 41.667 0.00 0.00 0.00 2.24
2933 3468 4.745620 GCTACAATGCTGGCTACTAACTAC 59.254 45.833 0.00 0.00 0.00 2.73
2955 3490 8.478877 ACTACTAAGATTTCCCTACATCAAGTG 58.521 37.037 0.00 0.00 0.00 3.16
2973 3508 5.357878 TCAAGTGTCAAGAGCAAGTTTCATT 59.642 36.000 0.00 0.00 0.00 2.57
3065 3601 3.568007 TGGTTCATTGTGCTTGGTAGTTC 59.432 43.478 0.00 0.00 0.00 3.01
3067 3603 4.320494 GGTTCATTGTGCTTGGTAGTTCAG 60.320 45.833 0.00 0.00 0.00 3.02
3078 3614 5.473796 TTGGTAGTTCAGACGTTTTTCAC 57.526 39.130 0.00 0.00 0.00 3.18
3095 3631 4.471904 TTCACCTTATCGTGAAGCAGAT 57.528 40.909 0.17 0.00 45.49 2.90
3460 4270 7.370383 ACATGAAATTTAAAGACGCACAATCT 58.630 30.769 0.00 0.00 0.00 2.40
3464 4274 4.383774 TTTAAAGACGCACAATCTCGTG 57.616 40.909 0.00 0.00 39.22 4.35
3570 4384 0.898320 TTGTGTTGGTGTTGTTGGGG 59.102 50.000 0.00 0.00 0.00 4.96
3579 4393 4.742012 TGGTGTTGTTGGGGTATTACATT 58.258 39.130 0.00 0.00 0.00 2.71
3608 4422 0.823460 CTCAGCTCCTTGAGACCCTC 59.177 60.000 0.00 0.00 45.95 4.30
3824 4638 8.782339 ATGAAATGGGTTTGATCTGAAAAATC 57.218 30.769 0.00 0.00 0.00 2.17
3825 4639 7.965718 TGAAATGGGTTTGATCTGAAAAATCT 58.034 30.769 0.00 0.00 0.00 2.40
3843 4657 8.465273 AAAAATCTAAAACTCAGTACTGGCTT 57.535 30.769 22.48 11.01 0.00 4.35
3844 4658 7.440523 AAATCTAAAACTCAGTACTGGCTTG 57.559 36.000 22.48 12.49 0.00 4.01
4053 4874 7.110155 TGAAAGTCTCCCAAGATATGTTAACC 58.890 38.462 2.48 0.00 33.08 2.85
4054 4875 6.893020 AAGTCTCCCAAGATATGTTAACCT 57.107 37.500 2.48 0.00 33.08 3.50
4302 5125 4.330074 GTGTTCTCTTACCATTGGTCGATG 59.670 45.833 12.68 2.24 37.09 3.84
4319 5142 4.273480 GTCGATGGCACTATAGCAAAATGT 59.727 41.667 0.00 0.00 35.83 2.71
4320 5143 4.273235 TCGATGGCACTATAGCAAAATGTG 59.727 41.667 0.00 0.00 35.83 3.21
4345 5168 0.867746 TTCTGCTGAACGTGTGATGC 59.132 50.000 1.33 0.00 0.00 3.91
4354 5177 3.377798 TGAACGTGTGATGCATGCATAAT 59.622 39.130 32.27 13.10 37.62 1.28
4357 5180 4.353737 ACGTGTGATGCATGCATAATTTC 58.646 39.130 32.27 20.81 37.62 2.17
4363 5186 7.170828 GTGTGATGCATGCATAATTTCATCATT 59.829 33.333 32.27 7.27 37.70 2.57
4365 5188 9.198837 GTGATGCATGCATAATTTCATCATTAA 57.801 29.630 32.27 0.00 37.70 1.40
4649 5472 5.562307 CGAGAAGTTCCTACTTGAGAACGAA 60.562 44.000 0.00 0.00 44.51 3.85
4709 5532 3.772932 ACTCTTTGAAACGTGACGTACA 58.227 40.909 12.37 12.35 39.99 2.90
4734 5557 1.544246 CCACCGGAAATTTGGTTCTCC 59.456 52.381 9.46 0.00 35.96 3.71
4745 5568 7.777440 GGAAATTTGGTTCTCCAGAATATCTCT 59.223 37.037 0.00 0.00 45.22 3.10
4746 5569 8.744568 AAATTTGGTTCTCCAGAATATCTCTC 57.255 34.615 0.00 0.00 45.22 3.20
4786 5609 9.529325 CACAATGTAAATATAGAAACTCCGAGA 57.471 33.333 1.33 0.00 0.00 4.04
4808 5631 0.816373 TATTGCGTGTACAGCCGGTA 59.184 50.000 1.90 0.00 0.00 4.02
4857 5680 0.037326 TCCGGTGAAGTGCTGATGAC 60.037 55.000 0.00 0.00 0.00 3.06
4866 5689 0.460284 GTGCTGATGACCGGTCGATT 60.460 55.000 28.70 16.52 0.00 3.34
4867 5690 0.460109 TGCTGATGACCGGTCGATTG 60.460 55.000 28.70 19.12 0.00 2.67
4872 5695 0.107214 ATGACCGGTCGATTGGCAAT 60.107 50.000 28.70 13.54 0.00 3.56
4889 5712 2.606308 GCAATTGGGATCGATGCACATC 60.606 50.000 19.14 1.59 34.56 3.06
4890 5713 2.882761 CAATTGGGATCGATGCACATCT 59.117 45.455 19.14 2.97 35.72 2.90
4891 5714 1.957668 TTGGGATCGATGCACATCTG 58.042 50.000 19.14 3.25 35.72 2.90
4902 5725 0.179145 GCACATCTGCATCAACAGGC 60.179 55.000 0.00 0.00 43.62 4.85
4912 5735 3.563808 TGCATCAACAGGCGGATATAAAC 59.436 43.478 0.00 0.00 29.29 2.01
5015 5844 1.883021 CACATTGTTCCCGCTTCCC 59.117 57.895 0.00 0.00 0.00 3.97
5020 5850 0.825840 TTGTTCCCGCTTCCCTTTGG 60.826 55.000 0.00 0.00 0.00 3.28
5021 5851 1.074248 GTTCCCGCTTCCCTTTGGA 59.926 57.895 0.00 0.00 39.54 3.53
5023 5853 0.407918 TTCCCGCTTCCCTTTGGATT 59.592 50.000 0.00 0.00 41.40 3.01
5024 5854 1.291109 TCCCGCTTCCCTTTGGATTA 58.709 50.000 0.00 0.00 41.40 1.75
5026 5856 2.243736 TCCCGCTTCCCTTTGGATTATT 59.756 45.455 0.00 0.00 41.40 1.40
5027 5857 3.460340 TCCCGCTTCCCTTTGGATTATTA 59.540 43.478 0.00 0.00 41.40 0.98
5028 5858 4.105697 TCCCGCTTCCCTTTGGATTATTAT 59.894 41.667 0.00 0.00 41.40 1.28
5029 5859 5.311121 TCCCGCTTCCCTTTGGATTATTATA 59.689 40.000 0.00 0.00 41.40 0.98
5104 5934 6.942005 TCATTGGAATTCTTGAGCTCACTTTA 59.058 34.615 18.03 0.00 0.00 1.85
5197 6435 1.040339 TTTTGCCGTGGAAACCTGCT 61.040 50.000 0.00 0.00 0.00 4.24
5288 6533 0.515564 CGTACCTGCCAAGTTTTCCG 59.484 55.000 0.00 0.00 0.00 4.30
5331 6576 5.106157 CCAGTACAGACAAATTCAACCATCC 60.106 44.000 0.00 0.00 0.00 3.51
5372 6617 0.616371 TAAAGCACGGCAGGGTACAT 59.384 50.000 0.00 0.00 0.00 2.29
5403 6648 1.145803 GAAACCTTGGTCGGAACTCG 58.854 55.000 0.00 0.00 40.90 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.442212 TAGTTTGATTCGTCGGCACA 57.558 45.000 0.00 0.00 0.00 4.57
55 56 1.136305 GATGGCACTAGTGGTTAGCGA 59.864 52.381 23.95 7.14 32.25 4.93
56 57 1.571919 GATGGCACTAGTGGTTAGCG 58.428 55.000 23.95 0.00 32.25 4.26
91 92 7.097192 AGAACAAAAAGGACCAAAGAAGTTTC 58.903 34.615 0.00 0.00 0.00 2.78
101 102 7.712204 ACTAGAAAAAGAACAAAAAGGACCA 57.288 32.000 0.00 0.00 0.00 4.02
182 193 9.978044 TTCATCAATTTACAATCACACATTTCA 57.022 25.926 0.00 0.00 0.00 2.69
269 280 6.345298 TCACAAATTTTGAAAAGAGTTCCCC 58.655 36.000 15.81 0.00 0.00 4.81
271 282 8.479313 AGTTCACAAATTTTGAAAAGAGTTCC 57.521 30.769 15.81 4.15 34.78 3.62
330 341 9.571810 CATCGAATTTGAAAATAAGTTCATGGA 57.428 29.630 0.00 0.00 37.36 3.41
331 342 9.571810 TCATCGAATTTGAAAATAAGTTCATGG 57.428 29.630 0.00 0.00 37.36 3.66
360 371 9.664332 TGAAAAGGTTCATTGAATTTGAGAAAA 57.336 25.926 1.78 0.00 38.88 2.29
582 596 9.265901 TGAAAACAAGTTCAACAATTTTCAAGA 57.734 25.926 17.56 3.05 40.93 3.02
583 597 9.875675 TTGAAAACAAGTTCAACAATTTTCAAG 57.124 25.926 22.65 0.00 44.67 3.02
614 628 6.432162 TCATCCATTTTCAAGAGGAAGTTCAG 59.568 38.462 5.01 0.00 36.72 3.02
619 633 6.830873 AGTTCATCCATTTTCAAGAGGAAG 57.169 37.500 0.00 0.00 36.72 3.46
704 754 6.680148 TGCCATTAGTGATAGGTAATAGCA 57.320 37.500 0.00 0.00 32.92 3.49
756 969 4.152580 GCAGTTCCACTAGCTTAAGTGTTC 59.847 45.833 14.15 5.69 44.45 3.18
767 980 0.388649 AACTCGCGCAGTTCCACTAG 60.389 55.000 16.24 1.05 42.07 2.57
900 1144 1.268625 CCAAACTAGAAACGTTGGGCC 59.731 52.381 0.00 0.00 29.27 5.80
947 1195 4.372999 AAAGCAGGAGGCCAGGGC 62.373 66.667 5.01 4.33 46.50 5.19
1068 1319 2.256461 GACGGCGTGGAGTAACGT 59.744 61.111 21.19 0.00 45.32 3.99
1155 1406 5.185828 ACTTGGGAGTTAAAATGAAGCATCC 59.814 40.000 0.00 0.00 29.87 3.51
1156 1407 6.272822 ACTTGGGAGTTAAAATGAAGCATC 57.727 37.500 0.00 0.00 29.87 3.91
1230 1481 1.073177 CCGGAACCGACAATACACAC 58.927 55.000 15.07 0.00 42.83 3.82
1233 1484 0.109179 CGACCGGAACCGACAATACA 60.109 55.000 9.46 0.00 42.83 2.29
1234 1485 1.416050 GCGACCGGAACCGACAATAC 61.416 60.000 9.46 0.00 42.83 1.89
1261 1512 1.334869 GCACCTGTGGTTGACAAGAAG 59.665 52.381 0.00 0.00 31.02 2.85
1282 1533 3.482722 AAATCTGAGCAAACATCAGCG 57.517 42.857 0.00 0.00 43.20 5.18
1291 1542 5.927689 CCAAACAGCAAATAAATCTGAGCAA 59.072 36.000 0.00 0.00 0.00 3.91
1295 1546 9.421806 CAAATACCAAACAGCAAATAAATCTGA 57.578 29.630 0.00 0.00 0.00 3.27
1328 1585 6.582929 AAGGAGAACTGGAGCCTTTTATAT 57.417 37.500 0.00 0.00 37.46 0.86
1329 1586 6.388619 AAAGGAGAACTGGAGCCTTTTATA 57.611 37.500 0.00 0.00 45.71 0.98
1330 1587 4.936685 AAGGAGAACTGGAGCCTTTTAT 57.063 40.909 0.00 0.00 37.46 1.40
1331 1588 4.724279 AAAGGAGAACTGGAGCCTTTTA 57.276 40.909 0.00 0.00 45.71 1.52
1332 1589 3.602205 AAAGGAGAACTGGAGCCTTTT 57.398 42.857 0.00 0.00 45.71 2.27
1334 1591 2.304470 GAGAAAGGAGAACTGGAGCCTT 59.696 50.000 0.00 0.00 42.27 4.35
1335 1592 1.905894 GAGAAAGGAGAACTGGAGCCT 59.094 52.381 0.00 0.00 0.00 4.58
1336 1593 1.065782 GGAGAAAGGAGAACTGGAGCC 60.066 57.143 0.00 0.00 0.00 4.70
1337 1594 1.905894 AGGAGAAAGGAGAACTGGAGC 59.094 52.381 0.00 0.00 0.00 4.70
1338 1595 3.326297 ACAAGGAGAAAGGAGAACTGGAG 59.674 47.826 0.00 0.00 0.00 3.86
1339 1596 3.318313 ACAAGGAGAAAGGAGAACTGGA 58.682 45.455 0.00 0.00 0.00 3.86
1340 1597 3.778954 ACAAGGAGAAAGGAGAACTGG 57.221 47.619 0.00 0.00 0.00 4.00
1341 1598 7.195839 CTTTTACAAGGAGAAAGGAGAACTG 57.804 40.000 0.00 0.00 0.00 3.16
1356 1613 7.276438 GCAAATAAATCTGGAGCCTTTTACAAG 59.724 37.037 0.00 0.00 0.00 3.16
1357 1614 7.039082 AGCAAATAAATCTGGAGCCTTTTACAA 60.039 33.333 0.00 0.00 0.00 2.41
1358 1615 6.437162 AGCAAATAAATCTGGAGCCTTTTACA 59.563 34.615 0.00 0.00 0.00 2.41
1359 1616 6.753744 CAGCAAATAAATCTGGAGCCTTTTAC 59.246 38.462 0.00 0.00 0.00 2.01
1360 1617 6.437162 ACAGCAAATAAATCTGGAGCCTTTTA 59.563 34.615 0.00 0.00 32.42 1.52
1361 1618 5.246883 ACAGCAAATAAATCTGGAGCCTTTT 59.753 36.000 0.00 0.00 32.42 2.27
1379 1636 6.481976 CGAAGGTCATATATACCAAACAGCAA 59.518 38.462 8.68 0.00 39.64 3.91
1427 1716 9.683069 CTGGTTTTTGACAATAATAGGCATATC 57.317 33.333 0.00 0.00 0.00 1.63
1428 1717 8.143835 GCTGGTTTTTGACAATAATAGGCATAT 58.856 33.333 0.00 0.00 0.00 1.78
1432 1721 5.965922 AGCTGGTTTTTGACAATAATAGGC 58.034 37.500 0.00 0.00 0.00 3.93
1437 1726 5.398169 CGCATAGCTGGTTTTTGACAATAA 58.602 37.500 0.00 0.00 0.00 1.40
1456 1745 2.226437 AGACAGTTTGATTTTCGCGCAT 59.774 40.909 8.75 0.00 0.00 4.73
1480 1812 3.317993 ACACAATAAAGTGACACTTGGGC 59.682 43.478 21.24 0.00 42.05 5.36
1571 1968 8.896744 ACACAAAAGAGTACTACGTATATAGCA 58.103 33.333 0.00 0.00 0.00 3.49
1679 2078 8.997323 GCTTTCATAGTCTAACTGCATATCATT 58.003 33.333 0.00 0.00 0.00 2.57
1680 2079 7.330454 CGCTTTCATAGTCTAACTGCATATCAT 59.670 37.037 0.00 0.00 0.00 2.45
1681 2080 6.642540 CGCTTTCATAGTCTAACTGCATATCA 59.357 38.462 0.00 0.00 0.00 2.15
1682 2081 6.863645 TCGCTTTCATAGTCTAACTGCATATC 59.136 38.462 0.00 0.00 0.00 1.63
1714 2113 2.898705 AGAGATTTCACGTCATCCAGC 58.101 47.619 0.00 0.00 0.00 4.85
1725 2124 5.692204 GTCGACACTTTCTCAAGAGATTTCA 59.308 40.000 11.55 0.00 37.29 2.69
1795 2194 2.992543 GCGCTCCAAGCATAGATTAGAG 59.007 50.000 0.00 0.00 42.58 2.43
1908 2307 3.779759 TGAACAACATGTGGAAAAGCAC 58.220 40.909 7.39 0.00 0.00 4.40
1959 2358 8.122306 TGACAGGTAATTAAATGATAACGACG 57.878 34.615 0.00 0.00 0.00 5.12
1983 2382 1.470098 GCAGTACCAAGTGAGGCATTG 59.530 52.381 0.00 0.00 0.00 2.82
2031 2441 5.007626 GCATACAACAACAGAACACAGAAGA 59.992 40.000 0.00 0.00 0.00 2.87
2037 2448 6.241207 ACATAGCATACAACAACAGAACAC 57.759 37.500 0.00 0.00 0.00 3.32
2041 2452 4.759183 TGCAACATAGCATACAACAACAGA 59.241 37.500 0.00 0.00 40.11 3.41
2048 2459 3.694072 GGGAACTGCAACATAGCATACAA 59.306 43.478 0.00 0.00 44.68 2.41
2059 2470 4.072131 TGACAGAAATAGGGAACTGCAAC 58.928 43.478 0.00 0.00 43.88 4.17
2061 2472 3.869912 GCTGACAGAAATAGGGAACTGCA 60.870 47.826 6.65 0.00 43.88 4.41
2081 2492 9.195411 CAAATAACATTTGTAATTGTCACTGCT 57.805 29.630 3.91 0.00 0.00 4.24
2094 2505 8.728833 CCACAAAATATGCCAAATAACATTTGT 58.271 29.630 9.96 0.00 29.31 2.83
2109 2520 7.119407 TGTGCATCAAAATTCCCACAAAATATG 59.881 33.333 0.00 0.00 31.09 1.78
2139 2550 5.048713 ACAGTTTAAACTAATGCAGAGGTGC 60.049 40.000 20.15 0.00 43.33 5.01
2152 2563 6.795098 TGAACGCATCATACAGTTTAAACT 57.205 33.333 15.22 15.22 34.33 2.66
2184 2595 3.068024 TCAAATGGACTTTGCCACTCAAC 59.932 43.478 0.00 0.00 43.32 3.18
2201 2612 5.940192 TGTTTAGCACGAGTGAATCAAAT 57.060 34.783 7.50 0.00 0.00 2.32
2205 2616 5.063944 ACATGATGTTTAGCACGAGTGAATC 59.936 40.000 7.50 1.21 0.00 2.52
2243 2662 9.017509 TCAGTCAAAAGAAAGATAGCAATCATT 57.982 29.630 0.00 0.00 34.28 2.57
2269 2688 2.664402 AACTGTGATTCTTGGGTGCT 57.336 45.000 0.00 0.00 0.00 4.40
2387 2806 8.871686 ATCAGTGATTTGTTAAACAGGAAAAC 57.128 30.769 0.00 0.00 0.00 2.43
2390 2809 8.231692 TCAATCAGTGATTTGTTAAACAGGAA 57.768 30.769 15.85 0.00 28.87 3.36
2391 2810 7.815840 TCAATCAGTGATTTGTTAAACAGGA 57.184 32.000 15.85 3.66 28.87 3.86
2414 2833 2.858745 TCTACCCTGCCAAACAACTTC 58.141 47.619 0.00 0.00 0.00 3.01
2452 2871 4.277515 TGTCTTCCCAGATGACTCTTTG 57.722 45.455 10.74 0.00 37.53 2.77
2574 2995 8.753497 AAATATGGTGAAGGATAAAAGAGGAC 57.247 34.615 0.00 0.00 0.00 3.85
2632 3053 7.035004 TGCACAAGATTATAACCATTCAAAGC 58.965 34.615 0.00 0.00 0.00 3.51
2635 3056 8.196771 GGAATGCACAAGATTATAACCATTCAA 58.803 33.333 10.85 0.00 39.15 2.69
2678 3099 8.004087 ACAGCTGCTCATGAATATACAAAAAT 57.996 30.769 15.27 0.00 0.00 1.82
2692 3113 1.411977 CTGCTACCTACAGCTGCTCAT 59.588 52.381 15.27 0.00 42.30 2.90
2705 3126 5.544650 TGAAAGGTTACTAACACTGCTACC 58.455 41.667 1.40 0.00 0.00 3.18
2712 3133 6.426937 TCTTGATGCTGAAAGGTTACTAACAC 59.573 38.462 1.40 0.00 0.00 3.32
2714 3135 7.173390 ACTTCTTGATGCTGAAAGGTTACTAAC 59.827 37.037 0.00 0.00 0.00 2.34
2792 3213 7.573710 ACTAATGCATGTTAGGGAGAACATTA 58.426 34.615 0.00 0.00 45.65 1.90
2795 3216 5.435686 ACTAATGCATGTTAGGGAGAACA 57.564 39.130 0.00 0.00 43.23 3.18
2796 3217 7.769044 TCTTTACTAATGCATGTTAGGGAGAAC 59.231 37.037 0.00 0.00 36.27 3.01
2798 3219 7.432148 TCTTTACTAATGCATGTTAGGGAGA 57.568 36.000 0.00 3.09 36.27 3.71
2799 3220 8.562892 CATTCTTTACTAATGCATGTTAGGGAG 58.437 37.037 0.00 0.82 36.27 4.30
2800 3221 8.052748 ACATTCTTTACTAATGCATGTTAGGGA 58.947 33.333 0.00 0.00 37.77 4.20
2801 3222 8.225603 ACATTCTTTACTAATGCATGTTAGGG 57.774 34.615 0.00 0.00 37.77 3.53
2911 3446 6.150396 AGTAGTTAGTAGCCAGCATTGTAG 57.850 41.667 0.00 0.00 0.00 2.74
2929 3464 8.478877 CACTTGATGTAGGGAAATCTTAGTAGT 58.521 37.037 0.00 0.00 0.00 2.73
2930 3465 8.478877 ACACTTGATGTAGGGAAATCTTAGTAG 58.521 37.037 0.00 0.00 40.88 2.57
2931 3466 8.375493 ACACTTGATGTAGGGAAATCTTAGTA 57.625 34.615 0.00 0.00 40.88 1.82
2932 3467 7.038302 TGACACTTGATGTAGGGAAATCTTAGT 60.038 37.037 0.00 0.00 43.56 2.24
2933 3468 7.331026 TGACACTTGATGTAGGGAAATCTTAG 58.669 38.462 0.00 0.00 43.56 2.18
2955 3490 5.684626 CAGTTGAATGAAACTTGCTCTTGAC 59.315 40.000 0.00 0.00 38.34 3.18
2973 3508 4.065088 CGAGAAGGATTTCAACCAGTTGA 58.935 43.478 9.12 9.12 46.72 3.18
3020 3555 7.122055 ACCAAACAAAGAGTAAGACAAATCACA 59.878 33.333 0.00 0.00 0.00 3.58
3028 3563 7.432252 CACAATGAACCAAACAAAGAGTAAGAC 59.568 37.037 0.00 0.00 0.00 3.01
3065 3601 4.446385 TCACGATAAGGTGAAAAACGTCTG 59.554 41.667 0.00 0.00 43.55 3.51
3067 3603 4.977741 TCACGATAAGGTGAAAAACGTC 57.022 40.909 0.00 0.00 43.55 4.34
3078 3614 6.450545 TCAGATAATCTGCTTCACGATAAGG 58.549 40.000 0.00 0.00 43.95 2.69
3095 3631 9.865152 TCCCAATCACAAATATTGATCAGATAA 57.135 29.630 0.00 0.00 36.61 1.75
3460 4270 0.108992 GTGCCCGAGTCATTACACGA 60.109 55.000 0.00 0.00 41.51 4.35
3464 4274 1.135199 TCGAAGTGCCCGAGTCATTAC 60.135 52.381 0.00 0.00 0.00 1.89
3570 4384 5.447818 GCTGAGGTGCTGTTCAATGTAATAC 60.448 44.000 0.00 0.00 0.00 1.89
3579 4393 1.123861 AGGAGCTGAGGTGCTGTTCA 61.124 55.000 4.49 0.00 44.17 3.18
3742 4556 8.964476 AGTGTATTTATCTATCTTTGTGGGTG 57.036 34.615 0.00 0.00 0.00 4.61
3824 4638 5.057149 ACACAAGCCAGTACTGAGTTTTAG 58.943 41.667 24.68 13.51 0.00 1.85
3825 4639 5.031066 ACACAAGCCAGTACTGAGTTTTA 57.969 39.130 24.68 0.00 0.00 1.52
3843 4657 5.711506 AGCATATCTTTCCAAATGTGACACA 59.288 36.000 11.41 11.41 0.00 3.72
3844 4658 6.199937 AGCATATCTTTCCAAATGTGACAC 57.800 37.500 0.00 0.00 0.00 3.67
3997 4813 8.306313 TCACTAGTAAGATAAGAAGAATGGCA 57.694 34.615 0.00 0.00 0.00 4.92
3998 4814 9.601217 TTTCACTAGTAAGATAAGAAGAATGGC 57.399 33.333 0.00 0.00 0.00 4.40
4013 4834 7.660208 GGGAGACTTTCATGTTTTCACTAGTAA 59.340 37.037 0.00 0.00 0.00 2.24
4053 4874 1.002888 AGCAGCATCATAATCCCCGAG 59.997 52.381 0.00 0.00 0.00 4.63
4054 4875 1.059098 AGCAGCATCATAATCCCCGA 58.941 50.000 0.00 0.00 0.00 5.14
4213 5036 6.369059 CAATAGTGCAATTTCCTTCTCGAT 57.631 37.500 0.00 0.00 0.00 3.59
4343 5166 9.251792 GTCTTTAATGATGAAATTATGCATGCA 57.748 29.630 25.04 25.04 0.00 3.96
4345 5168 9.752961 TGGTCTTTAATGATGAAATTATGCATG 57.247 29.630 10.16 0.00 0.00 4.06
4354 5177 8.106462 TGTACCTGATGGTCTTTAATGATGAAA 58.894 33.333 0.00 0.00 44.78 2.69
4357 5180 7.521099 GCATGTACCTGATGGTCTTTAATGATG 60.521 40.741 1.92 0.00 44.78 3.07
4363 5186 3.521531 TGGCATGTACCTGATGGTCTTTA 59.478 43.478 1.92 0.00 44.78 1.85
4365 5188 1.915489 TGGCATGTACCTGATGGTCTT 59.085 47.619 1.92 0.00 44.78 3.01
4649 5472 1.079543 GATGTCGTCTGCCACAGCT 60.080 57.895 0.00 0.00 40.80 4.24
4709 5532 2.673258 ACCAAATTTCCGGTGGTCTTT 58.327 42.857 7.84 0.00 42.00 2.52
4734 5557 5.359292 TGATATGGCGAGGAGAGATATTCTG 59.641 44.000 0.00 0.00 35.87 3.02
4745 5568 3.205338 CATTGTGTTGATATGGCGAGGA 58.795 45.455 0.00 0.00 0.00 3.71
4746 5569 2.945008 ACATTGTGTTGATATGGCGAGG 59.055 45.455 0.00 0.00 0.00 4.63
4786 5609 1.668751 CCGGCTGTACACGCAATATTT 59.331 47.619 15.90 0.00 0.00 1.40
4808 5631 7.458409 AATAAATGAGCCGCTCAAATCATAT 57.542 32.000 26.30 15.94 44.04 1.78
4857 5680 1.433064 CCAATTGCCAATCGACCGG 59.567 57.895 0.00 0.00 0.00 5.28
4866 5689 0.395448 TGCATCGATCCCAATTGCCA 60.395 50.000 0.00 0.00 32.39 4.92
4867 5690 0.031178 GTGCATCGATCCCAATTGCC 59.969 55.000 0.00 0.00 32.39 4.52
4872 5695 1.957668 CAGATGTGCATCGATCCCAA 58.042 50.000 0.00 0.00 42.48 4.12
4889 5712 1.888215 ATATCCGCCTGTTGATGCAG 58.112 50.000 0.00 0.00 36.31 4.41
4890 5713 3.483808 TTATATCCGCCTGTTGATGCA 57.516 42.857 0.00 0.00 0.00 3.96
4891 5714 3.363970 CGTTTATATCCGCCTGTTGATGC 60.364 47.826 0.00 0.00 0.00 3.91
4902 5725 3.182341 TGGAACCACCGTTTATATCCG 57.818 47.619 0.00 0.00 42.61 4.18
4912 5735 1.448985 CACACCTTATGGAACCACCG 58.551 55.000 0.81 0.00 42.61 4.94
5026 5856 9.563748 GGCTAACCAAGGTACAAATTACATATA 57.436 33.333 0.00 0.00 35.26 0.86
5027 5857 7.227910 CGGCTAACCAAGGTACAAATTACATAT 59.772 37.037 0.00 0.00 34.57 1.78
5028 5858 6.539464 CGGCTAACCAAGGTACAAATTACATA 59.461 38.462 0.00 0.00 34.57 2.29
5029 5859 5.355910 CGGCTAACCAAGGTACAAATTACAT 59.644 40.000 0.00 0.00 34.57 2.29
5178 6416 1.040339 AGCAGGTTTCCACGGCAAAA 61.040 50.000 0.00 0.00 0.00 2.44
5197 6435 3.181501 GCTATGCACGCAAGGTTGAAATA 60.182 43.478 5.03 0.00 46.39 1.40
5228 6466 2.271944 AACTTGACCTGTGGCTTACC 57.728 50.000 0.00 0.00 0.00 2.85
5288 6533 4.757149 ACTGGTGTCATGTAAAAAGAGAGC 59.243 41.667 0.00 0.00 0.00 4.09
5331 6576 2.937469 TGCAAGATTTTACGGCCATG 57.063 45.000 2.24 0.00 0.00 3.66
5372 6617 1.469335 AAGGTTTCCGCTCGAGACCA 61.469 55.000 18.75 0.00 46.23 4.02
5572 6826 2.262915 GAGTCGGGCAGGTCACAG 59.737 66.667 0.00 0.00 0.00 3.66
5573 6827 3.680786 CGAGTCGGGCAGGTCACA 61.681 66.667 4.10 0.00 0.00 3.58
5574 6828 4.436998 CCGAGTCGGGCAGGTCAC 62.437 72.222 24.39 0.00 44.15 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.