Multiple sequence alignment - TraesCS3A01G483600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G483600 chr3A 100.000 1958 0 0 1 1958 713850871 713848914 0.000000e+00 3616
1 TraesCS3A01G483600 chr3A 90.563 1102 86 11 660 1745 713869058 713867959 0.000000e+00 1443
2 TraesCS3A01G483600 chr3A 84.394 974 136 9 636 1596 713931266 713930296 0.000000e+00 942
3 TraesCS3A01G483600 chr3A 100.000 299 0 0 2362 2660 713848510 713848212 1.080000e-153 553
4 TraesCS3A01G483600 chr3A 77.558 909 189 14 663 1567 713535484 713534587 3.900000e-148 534
5 TraesCS3A01G483600 chr3A 76.818 949 197 20 664 1604 713623351 713622418 1.830000e-141 512
6 TraesCS3A01G483600 chr3A 95.455 308 14 0 1 308 742266982 742266675 2.380000e-135 492
7 TraesCS3A01G483600 chr3A 95.302 298 14 0 2362 2659 13955993 13955696 8.620000e-130 473
8 TraesCS3A01G483600 chr3A 95.876 194 8 0 1765 1958 13956212 13956019 5.530000e-82 315
9 TraesCS3A01G483600 chr3A 94.500 200 11 0 1759 1958 705303216 705303415 2.570000e-80 309
10 TraesCS3A01G483600 chr3A 92.079 202 14 2 1757 1958 41375572 41375373 1.560000e-72 283
11 TraesCS3A01G483600 chr3B 90.224 1115 93 10 639 1739 771533508 771532396 0.000000e+00 1441
12 TraesCS3A01G483600 chr3B 78.242 910 179 15 664 1567 771171538 771172434 1.380000e-157 566
13 TraesCS3A01G483600 chr3B 77.875 913 179 20 663 1567 770969770 770968873 1.800000e-151 545
14 TraesCS3A01G483600 chr3B 93.035 201 12 2 1758 1958 754447125 754447323 2.590000e-75 292
15 TraesCS3A01G483600 chr3B 93.069 202 10 4 1757 1958 804851623 804851426 2.590000e-75 292
16 TraesCS3A01G483600 chr3B 75.336 446 100 7 1156 1596 770652804 770652364 3.470000e-49 206
17 TraesCS3A01G483600 chr3D 90.261 1109 83 12 660 1745 578243582 578242476 0.000000e+00 1426
18 TraesCS3A01G483600 chr3D 83.385 975 144 13 636 1596 578260394 578259424 0.000000e+00 887
19 TraesCS3A01G483600 chr3D 77.033 910 175 20 663 1567 577969140 577970020 2.380000e-135 492
20 TraesCS3A01G483600 chr1A 97.419 310 8 0 1 310 27284241 27283932 1.810000e-146 529
21 TraesCS3A01G483600 chr1A 97.720 307 7 0 1 307 508933882 508933576 1.810000e-146 529
22 TraesCS3A01G483600 chr7A 97.993 299 5 1 2362 2659 670885056 670885354 3.930000e-143 518
23 TraesCS3A01G483600 chr7A 93.485 307 7 3 1 307 16699049 16698756 6.760000e-121 444
24 TraesCS3A01G483600 chr7A 95.500 200 8 1 1759 1958 670884831 670885029 4.270000e-83 318
25 TraesCS3A01G483600 chr5A 96.091 307 12 0 1 307 701905053 701905359 3.950000e-138 501
26 TraesCS3A01G483600 chr5A 93.968 315 7 2 1 315 683601632 683601330 1.440000e-127 466
27 TraesCS3A01G483600 chr5A 93.798 258 15 1 2403 2659 458520241 458519984 1.150000e-103 387
28 TraesCS3A01G483600 chr6A 96.656 299 9 1 2362 2659 277286138 277285840 1.840000e-136 496
29 TraesCS3A01G483600 chr6A 97.578 289 7 0 2371 2659 454778594 454778882 1.840000e-136 496
30 TraesCS3A01G483600 chr6A 96.447 197 7 0 1762 1958 277286361 277286165 2.550000e-85 326
31 TraesCS3A01G483600 chr1D 95.987 299 11 1 2362 2659 402327942 402328240 3.980000e-133 484
32 TraesCS3A01G483600 chr2A 94.098 305 6 2 1 305 778368798 778369090 1.120000e-123 453
33 TraesCS3A01G483600 chr2A 92.605 311 20 1 1 308 604747739 604748049 6.760000e-121 444
34 TraesCS3A01G483600 chr6D 92.568 296 21 1 2362 2656 83276604 83276899 8.800000e-115 424
35 TraesCS3A01G483600 chr4A 93.704 270 14 2 2363 2631 701934541 701934808 4.120000e-108 401
36 TraesCS3A01G483600 chr4B 87.697 317 29 7 1 312 605560791 605560480 7.000000e-96 361
37 TraesCS3A01G483600 chr4B 91.707 205 14 3 1756 1958 41840239 41840036 5.610000e-72 281
38 TraesCS3A01G483600 chr5D 87.713 293 32 4 2371 2659 530411257 530410965 3.280000e-89 339
39 TraesCS3A01G483600 chr1B 93.069 202 12 2 1757 1958 7406627 7406428 7.200000e-76 294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G483600 chr3A 713848212 713850871 2659 True 2084.5 3616 100.0000 1 2660 2 chr3A.!!$R8 2659
1 TraesCS3A01G483600 chr3A 713867959 713869058 1099 True 1443.0 1443 90.5630 660 1745 1 chr3A.!!$R4 1085
2 TraesCS3A01G483600 chr3A 713930296 713931266 970 True 942.0 942 84.3940 636 1596 1 chr3A.!!$R5 960
3 TraesCS3A01G483600 chr3A 713534587 713535484 897 True 534.0 534 77.5580 663 1567 1 chr3A.!!$R2 904
4 TraesCS3A01G483600 chr3A 713622418 713623351 933 True 512.0 512 76.8180 664 1604 1 chr3A.!!$R3 940
5 TraesCS3A01G483600 chr3A 13955696 13956212 516 True 394.0 473 95.5890 1765 2659 2 chr3A.!!$R7 894
6 TraesCS3A01G483600 chr3B 771532396 771533508 1112 True 1441.0 1441 90.2240 639 1739 1 chr3B.!!$R3 1100
7 TraesCS3A01G483600 chr3B 771171538 771172434 896 False 566.0 566 78.2420 664 1567 1 chr3B.!!$F2 903
8 TraesCS3A01G483600 chr3B 770968873 770969770 897 True 545.0 545 77.8750 663 1567 1 chr3B.!!$R2 904
9 TraesCS3A01G483600 chr3D 578242476 578243582 1106 True 1426.0 1426 90.2610 660 1745 1 chr3D.!!$R1 1085
10 TraesCS3A01G483600 chr3D 578259424 578260394 970 True 887.0 887 83.3850 636 1596 1 chr3D.!!$R2 960
11 TraesCS3A01G483600 chr3D 577969140 577970020 880 False 492.0 492 77.0330 663 1567 1 chr3D.!!$F1 904
12 TraesCS3A01G483600 chr7A 670884831 670885354 523 False 418.0 518 96.7465 1759 2659 2 chr7A.!!$F1 900
13 TraesCS3A01G483600 chr6A 277285840 277286361 521 True 411.0 496 96.5515 1762 2659 2 chr6A.!!$R1 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.251354 AGACGGCAGCTCATGATGTT 59.749 50.0 0.00 0.00 31.27 2.71 F
210 211 0.376152 GACGGCAGCTCATGATGTTG 59.624 55.0 0.00 0.33 31.27 3.33 F
213 214 0.381089 GGCAGCTCATGATGTTGCTC 59.619 55.0 22.85 14.61 35.23 4.26 F
251 252 0.423544 ACTCCCCTCTCAAATCCCCT 59.576 55.0 0.00 0.00 0.00 4.79 F
787 788 0.457443 CGCATCTACTCTGTCCAGCA 59.543 55.0 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1166 1180 0.109412 GTACACGTTGGCGAGTAGCT 60.109 55.000 0.00 0.00 42.80 3.32 R
1292 1306 0.392193 CATGGCGCTGAAGAGGTTCT 60.392 55.000 7.64 0.00 33.38 3.01 R
1632 1649 0.542702 CACCAAGCCCATGGGAGTTT 60.543 55.000 36.00 20.94 45.18 2.66 R
1638 1655 1.978617 GTGTCCACCAAGCCCATGG 60.979 63.158 4.14 4.14 46.38 3.66 R
1745 1780 2.001838 GAGGAGGGGAAGGGGTTCC 61.002 68.421 0.00 0.00 40.38 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.622064 AGGTCTCGCTGAAAAAGTGT 57.378 45.000 0.00 0.00 37.67 3.55
21 22 2.919228 AGGTCTCGCTGAAAAAGTGTT 58.081 42.857 0.00 0.00 37.67 3.32
22 23 3.279434 AGGTCTCGCTGAAAAAGTGTTT 58.721 40.909 0.00 0.00 37.67 2.83
23 24 3.694566 AGGTCTCGCTGAAAAAGTGTTTT 59.305 39.130 0.00 0.00 39.70 2.43
37 38 9.331106 GAAAAAGTGTTTTCTAGCTTATGTAGC 57.669 33.333 0.00 0.00 46.89 3.58
38 39 8.846211 AAAAAGTGTTTTCTAGCTTATGTAGCA 58.154 29.630 0.00 0.00 41.59 3.49
53 54 8.498054 CTTATGTAGCAAGATGGGGTTATATG 57.502 38.462 0.00 0.00 0.00 1.78
54 55 6.702449 ATGTAGCAAGATGGGGTTATATGA 57.298 37.500 0.00 0.00 0.00 2.15
55 56 6.702449 TGTAGCAAGATGGGGTTATATGAT 57.298 37.500 0.00 0.00 0.00 2.45
56 57 6.475504 TGTAGCAAGATGGGGTTATATGATG 58.524 40.000 0.00 0.00 0.00 3.07
57 58 5.589367 AGCAAGATGGGGTTATATGATGT 57.411 39.130 0.00 0.00 0.00 3.06
58 59 5.319453 AGCAAGATGGGGTTATATGATGTG 58.681 41.667 0.00 0.00 0.00 3.21
59 60 5.072741 GCAAGATGGGGTTATATGATGTGT 58.927 41.667 0.00 0.00 0.00 3.72
60 61 5.536161 GCAAGATGGGGTTATATGATGTGTT 59.464 40.000 0.00 0.00 0.00 3.32
61 62 6.040842 GCAAGATGGGGTTATATGATGTGTTT 59.959 38.462 0.00 0.00 0.00 2.83
62 63 7.428020 CAAGATGGGGTTATATGATGTGTTTG 58.572 38.462 0.00 0.00 0.00 2.93
63 64 5.536161 AGATGGGGTTATATGATGTGTTTGC 59.464 40.000 0.00 0.00 0.00 3.68
64 65 3.957497 TGGGGTTATATGATGTGTTTGCC 59.043 43.478 0.00 0.00 0.00 4.52
65 66 3.320826 GGGGTTATATGATGTGTTTGCCC 59.679 47.826 0.00 0.00 0.00 5.36
66 67 3.320826 GGGTTATATGATGTGTTTGCCCC 59.679 47.826 0.00 0.00 0.00 5.80
67 68 3.957497 GGTTATATGATGTGTTTGCCCCA 59.043 43.478 0.00 0.00 0.00 4.96
68 69 4.588528 GGTTATATGATGTGTTTGCCCCAT 59.411 41.667 0.00 0.00 0.00 4.00
69 70 5.278957 GGTTATATGATGTGTTTGCCCCATC 60.279 44.000 0.00 0.00 36.40 3.51
70 71 2.537633 ATGATGTGTTTGCCCCATCT 57.462 45.000 0.00 0.00 36.72 2.90
71 72 2.307496 TGATGTGTTTGCCCCATCTT 57.693 45.000 0.00 0.00 36.72 2.40
72 73 1.894466 TGATGTGTTTGCCCCATCTTG 59.106 47.619 0.00 0.00 36.72 3.02
73 74 2.170166 GATGTGTTTGCCCCATCTTGA 58.830 47.619 0.00 0.00 33.74 3.02
74 75 1.619654 TGTGTTTGCCCCATCTTGAG 58.380 50.000 0.00 0.00 0.00 3.02
75 76 0.890683 GTGTTTGCCCCATCTTGAGG 59.109 55.000 0.00 0.00 0.00 3.86
81 82 4.508065 CCCATCTTGAGGGGGAGT 57.492 61.111 12.16 0.00 45.08 3.85
82 83 1.918253 CCCATCTTGAGGGGGAGTG 59.082 63.158 12.16 0.00 45.08 3.51
83 84 0.916358 CCCATCTTGAGGGGGAGTGT 60.916 60.000 12.16 0.00 45.08 3.55
84 85 0.995024 CCATCTTGAGGGGGAGTGTT 59.005 55.000 0.00 0.00 0.00 3.32
85 86 1.340405 CCATCTTGAGGGGGAGTGTTG 60.340 57.143 0.00 0.00 0.00 3.33
86 87 1.630369 CATCTTGAGGGGGAGTGTTGA 59.370 52.381 0.00 0.00 0.00 3.18
87 88 1.352083 TCTTGAGGGGGAGTGTTGAG 58.648 55.000 0.00 0.00 0.00 3.02
88 89 1.059913 CTTGAGGGGGAGTGTTGAGT 58.940 55.000 0.00 0.00 0.00 3.41
89 90 1.421646 CTTGAGGGGGAGTGTTGAGTT 59.578 52.381 0.00 0.00 0.00 3.01
90 91 1.518367 TGAGGGGGAGTGTTGAGTTT 58.482 50.000 0.00 0.00 0.00 2.66
91 92 2.696775 TGAGGGGGAGTGTTGAGTTTA 58.303 47.619 0.00 0.00 0.00 2.01
92 93 2.637872 TGAGGGGGAGTGTTGAGTTTAG 59.362 50.000 0.00 0.00 0.00 1.85
93 94 2.638363 GAGGGGGAGTGTTGAGTTTAGT 59.362 50.000 0.00 0.00 0.00 2.24
94 95 2.372172 AGGGGGAGTGTTGAGTTTAGTG 59.628 50.000 0.00 0.00 0.00 2.74
95 96 2.552373 GGGGGAGTGTTGAGTTTAGTGG 60.552 54.545 0.00 0.00 0.00 4.00
96 97 2.105993 GGGGAGTGTTGAGTTTAGTGGT 59.894 50.000 0.00 0.00 0.00 4.16
97 98 3.325716 GGGGAGTGTTGAGTTTAGTGGTA 59.674 47.826 0.00 0.00 0.00 3.25
98 99 4.202388 GGGGAGTGTTGAGTTTAGTGGTAA 60.202 45.833 0.00 0.00 0.00 2.85
99 100 5.370679 GGGAGTGTTGAGTTTAGTGGTAAA 58.629 41.667 0.00 0.00 0.00 2.01
100 101 6.002082 GGGAGTGTTGAGTTTAGTGGTAAAT 58.998 40.000 0.00 0.00 30.76 1.40
101 102 6.489022 GGGAGTGTTGAGTTTAGTGGTAAATT 59.511 38.462 0.00 0.00 30.76 1.82
102 103 7.013942 GGGAGTGTTGAGTTTAGTGGTAAATTT 59.986 37.037 0.00 0.00 30.76 1.82
103 104 7.860872 GGAGTGTTGAGTTTAGTGGTAAATTTG 59.139 37.037 0.00 0.00 30.76 2.32
104 105 8.288689 AGTGTTGAGTTTAGTGGTAAATTTGT 57.711 30.769 0.00 0.00 30.76 2.83
105 106 9.398538 AGTGTTGAGTTTAGTGGTAAATTTGTA 57.601 29.630 0.00 0.00 30.76 2.41
161 162 4.602340 GTCAGGAGGACAAGAGTGTAAA 57.398 45.455 0.00 0.00 46.19 2.01
162 163 4.561105 GTCAGGAGGACAAGAGTGTAAAG 58.439 47.826 0.00 0.00 46.19 1.85
163 164 4.281182 GTCAGGAGGACAAGAGTGTAAAGA 59.719 45.833 0.00 0.00 46.19 2.52
164 165 4.899457 TCAGGAGGACAAGAGTGTAAAGAA 59.101 41.667 0.00 0.00 38.41 2.52
165 166 5.011125 TCAGGAGGACAAGAGTGTAAAGAAG 59.989 44.000 0.00 0.00 38.41 2.85
166 167 4.284746 AGGAGGACAAGAGTGTAAAGAAGG 59.715 45.833 0.00 0.00 38.41 3.46
167 168 4.283722 GGAGGACAAGAGTGTAAAGAAGGA 59.716 45.833 0.00 0.00 38.41 3.36
168 169 5.221661 GGAGGACAAGAGTGTAAAGAAGGAA 60.222 44.000 0.00 0.00 38.41 3.36
169 170 5.859495 AGGACAAGAGTGTAAAGAAGGAAG 58.141 41.667 0.00 0.00 38.41 3.46
170 171 5.602978 AGGACAAGAGTGTAAAGAAGGAAGA 59.397 40.000 0.00 0.00 38.41 2.87
171 172 5.929415 GGACAAGAGTGTAAAGAAGGAAGAG 59.071 44.000 0.00 0.00 38.41 2.85
172 173 6.239345 GGACAAGAGTGTAAAGAAGGAAGAGA 60.239 42.308 0.00 0.00 38.41 3.10
173 174 6.754193 ACAAGAGTGTAAAGAAGGAAGAGAG 58.246 40.000 0.00 0.00 35.72 3.20
174 175 6.551601 ACAAGAGTGTAAAGAAGGAAGAGAGA 59.448 38.462 0.00 0.00 35.72 3.10
175 176 6.834168 AGAGTGTAAAGAAGGAAGAGAGAG 57.166 41.667 0.00 0.00 0.00 3.20
176 177 6.548321 AGAGTGTAAAGAAGGAAGAGAGAGA 58.452 40.000 0.00 0.00 0.00 3.10
177 178 7.182060 AGAGTGTAAAGAAGGAAGAGAGAGAT 58.818 38.462 0.00 0.00 0.00 2.75
178 179 8.333235 AGAGTGTAAAGAAGGAAGAGAGAGATA 58.667 37.037 0.00 0.00 0.00 1.98
179 180 8.887264 AGTGTAAAGAAGGAAGAGAGAGATAA 57.113 34.615 0.00 0.00 0.00 1.75
180 181 8.966868 AGTGTAAAGAAGGAAGAGAGAGATAAG 58.033 37.037 0.00 0.00 0.00 1.73
181 182 8.194769 GTGTAAAGAAGGAAGAGAGAGATAAGG 58.805 40.741 0.00 0.00 0.00 2.69
182 183 8.116669 TGTAAAGAAGGAAGAGAGAGATAAGGA 58.883 37.037 0.00 0.00 0.00 3.36
183 184 8.973182 GTAAAGAAGGAAGAGAGAGATAAGGAA 58.027 37.037 0.00 0.00 0.00 3.36
184 185 8.442660 AAAGAAGGAAGAGAGAGATAAGGAAA 57.557 34.615 0.00 0.00 0.00 3.13
185 186 7.660030 AGAAGGAAGAGAGAGATAAGGAAAG 57.340 40.000 0.00 0.00 0.00 2.62
186 187 6.611236 AGAAGGAAGAGAGAGATAAGGAAAGG 59.389 42.308 0.00 0.00 0.00 3.11
187 188 6.098716 AGGAAGAGAGAGATAAGGAAAGGA 57.901 41.667 0.00 0.00 0.00 3.36
188 189 6.507568 AGGAAGAGAGAGATAAGGAAAGGAA 58.492 40.000 0.00 0.00 0.00 3.36
189 190 7.138934 AGGAAGAGAGAGATAAGGAAAGGAAT 58.861 38.462 0.00 0.00 0.00 3.01
190 191 8.293216 AGGAAGAGAGAGATAAGGAAAGGAATA 58.707 37.037 0.00 0.00 0.00 1.75
191 192 8.585018 GGAAGAGAGAGATAAGGAAAGGAATAG 58.415 40.741 0.00 0.00 0.00 1.73
192 193 9.362151 GAAGAGAGAGATAAGGAAAGGAATAGA 57.638 37.037 0.00 0.00 0.00 1.98
193 194 8.706322 AGAGAGAGATAAGGAAAGGAATAGAC 57.294 38.462 0.00 0.00 0.00 2.59
194 195 7.447238 AGAGAGAGATAAGGAAAGGAATAGACG 59.553 40.741 0.00 0.00 0.00 4.18
195 196 6.492087 AGAGAGATAAGGAAAGGAATAGACGG 59.508 42.308 0.00 0.00 0.00 4.79
196 197 5.011227 AGAGATAAGGAAAGGAATAGACGGC 59.989 44.000 0.00 0.00 0.00 5.68
197 198 4.654262 AGATAAGGAAAGGAATAGACGGCA 59.346 41.667 0.00 0.00 0.00 5.69
198 199 2.990066 AGGAAAGGAATAGACGGCAG 57.010 50.000 0.00 0.00 0.00 4.85
199 200 1.134371 AGGAAAGGAATAGACGGCAGC 60.134 52.381 0.00 0.00 0.00 5.25
200 201 1.134371 GGAAAGGAATAGACGGCAGCT 60.134 52.381 0.00 0.00 0.00 4.24
201 202 2.205911 GAAAGGAATAGACGGCAGCTC 58.794 52.381 0.00 0.00 0.00 4.09
202 203 1.195115 AAGGAATAGACGGCAGCTCA 58.805 50.000 0.00 0.00 0.00 4.26
203 204 1.418334 AGGAATAGACGGCAGCTCAT 58.582 50.000 0.00 0.00 0.00 2.90
204 205 1.069823 AGGAATAGACGGCAGCTCATG 59.930 52.381 0.00 0.00 0.00 3.07
205 206 1.069204 GGAATAGACGGCAGCTCATGA 59.931 52.381 0.00 0.00 0.00 3.07
206 207 2.289320 GGAATAGACGGCAGCTCATGAT 60.289 50.000 0.00 0.00 0.00 2.45
207 208 2.452295 ATAGACGGCAGCTCATGATG 57.548 50.000 0.00 0.00 0.00 3.07
208 209 1.114627 TAGACGGCAGCTCATGATGT 58.885 50.000 0.00 0.00 31.27 3.06
209 210 0.251354 AGACGGCAGCTCATGATGTT 59.749 50.000 0.00 0.00 31.27 2.71
210 211 0.376152 GACGGCAGCTCATGATGTTG 59.624 55.000 0.00 0.33 31.27 3.33
211 212 1.063649 CGGCAGCTCATGATGTTGC 59.936 57.895 18.71 18.71 31.27 4.17
212 213 1.374343 CGGCAGCTCATGATGTTGCT 61.374 55.000 22.85 14.75 35.23 3.91
213 214 0.381089 GGCAGCTCATGATGTTGCTC 59.619 55.000 22.85 14.61 35.23 4.26
214 215 0.381089 GCAGCTCATGATGTTGCTCC 59.619 55.000 19.26 3.93 33.03 4.70
215 216 1.746470 CAGCTCATGATGTTGCTCCA 58.254 50.000 11.32 0.00 33.03 3.86
216 217 1.671328 CAGCTCATGATGTTGCTCCAG 59.329 52.381 11.32 0.68 33.03 3.86
217 218 1.281287 AGCTCATGATGTTGCTCCAGT 59.719 47.619 0.00 0.00 0.00 4.00
218 219 2.089980 GCTCATGATGTTGCTCCAGTT 58.910 47.619 0.00 0.00 0.00 3.16
219 220 2.097142 GCTCATGATGTTGCTCCAGTTC 59.903 50.000 0.00 0.00 0.00 3.01
220 221 3.607741 CTCATGATGTTGCTCCAGTTCT 58.392 45.455 0.00 0.00 0.00 3.01
221 222 3.603532 TCATGATGTTGCTCCAGTTCTC 58.396 45.455 0.00 0.00 0.00 2.87
222 223 3.262660 TCATGATGTTGCTCCAGTTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
223 224 3.049708 TGATGTTGCTCCAGTTCTCTG 57.950 47.619 0.00 0.00 41.01 3.35
224 225 2.369860 TGATGTTGCTCCAGTTCTCTGT 59.630 45.455 0.00 0.00 39.82 3.41
225 226 3.578282 TGATGTTGCTCCAGTTCTCTGTA 59.422 43.478 0.00 0.00 39.82 2.74
226 227 4.223700 TGATGTTGCTCCAGTTCTCTGTAT 59.776 41.667 0.00 0.00 39.82 2.29
227 228 4.623932 TGTTGCTCCAGTTCTCTGTATT 57.376 40.909 0.00 0.00 39.82 1.89
228 229 4.318332 TGTTGCTCCAGTTCTCTGTATTG 58.682 43.478 0.00 0.00 39.82 1.90
229 230 4.202357 TGTTGCTCCAGTTCTCTGTATTGT 60.202 41.667 0.00 0.00 39.82 2.71
230 231 3.930336 TGCTCCAGTTCTCTGTATTGTG 58.070 45.455 0.00 0.00 39.82 3.33
231 232 3.578282 TGCTCCAGTTCTCTGTATTGTGA 59.422 43.478 0.00 0.00 39.82 3.58
232 233 4.040339 TGCTCCAGTTCTCTGTATTGTGAA 59.960 41.667 0.00 0.00 39.82 3.18
233 234 4.390297 GCTCCAGTTCTCTGTATTGTGAAC 59.610 45.833 0.00 0.00 39.82 3.18
234 235 5.788450 CTCCAGTTCTCTGTATTGTGAACT 58.212 41.667 0.00 0.00 45.65 3.01
235 236 5.784177 TCCAGTTCTCTGTATTGTGAACTC 58.216 41.667 8.41 0.00 44.08 3.01
236 237 4.932200 CCAGTTCTCTGTATTGTGAACTCC 59.068 45.833 8.41 0.00 44.08 3.85
237 238 4.932200 CAGTTCTCTGTATTGTGAACTCCC 59.068 45.833 8.41 0.00 44.08 4.30
238 239 4.020128 AGTTCTCTGTATTGTGAACTCCCC 60.020 45.833 0.00 0.00 43.10 4.81
239 240 3.791320 TCTCTGTATTGTGAACTCCCCT 58.209 45.455 0.00 0.00 0.00 4.79
240 241 3.769844 TCTCTGTATTGTGAACTCCCCTC 59.230 47.826 0.00 0.00 0.00 4.30
241 242 3.772025 CTCTGTATTGTGAACTCCCCTCT 59.228 47.826 0.00 0.00 0.00 3.69
242 243 3.769844 TCTGTATTGTGAACTCCCCTCTC 59.230 47.826 0.00 0.00 0.00 3.20
243 244 3.515502 CTGTATTGTGAACTCCCCTCTCA 59.484 47.826 0.00 0.00 0.00 3.27
244 245 3.907474 TGTATTGTGAACTCCCCTCTCAA 59.093 43.478 0.00 0.00 32.58 3.02
245 246 4.349636 TGTATTGTGAACTCCCCTCTCAAA 59.650 41.667 0.00 0.00 32.00 2.69
246 247 4.664688 ATTGTGAACTCCCCTCTCAAAT 57.335 40.909 0.00 0.00 32.00 2.32
247 248 3.703001 TGTGAACTCCCCTCTCAAATC 57.297 47.619 0.00 0.00 0.00 2.17
248 249 2.305927 TGTGAACTCCCCTCTCAAATCC 59.694 50.000 0.00 0.00 0.00 3.01
249 250 1.916181 TGAACTCCCCTCTCAAATCCC 59.084 52.381 0.00 0.00 0.00 3.85
250 251 1.213182 GAACTCCCCTCTCAAATCCCC 59.787 57.143 0.00 0.00 0.00 4.81
251 252 0.423544 ACTCCCCTCTCAAATCCCCT 59.576 55.000 0.00 0.00 0.00 4.79
252 253 1.135960 CTCCCCTCTCAAATCCCCTC 58.864 60.000 0.00 0.00 0.00 4.30
253 254 0.725133 TCCCCTCTCAAATCCCCTCT 59.275 55.000 0.00 0.00 0.00 3.69
254 255 1.135960 CCCCTCTCAAATCCCCTCTC 58.864 60.000 0.00 0.00 0.00 3.20
255 256 1.626350 CCCCTCTCAAATCCCCTCTCA 60.626 57.143 0.00 0.00 0.00 3.27
256 257 2.200081 CCCTCTCAAATCCCCTCTCAA 58.800 52.381 0.00 0.00 0.00 3.02
257 258 2.578021 CCCTCTCAAATCCCCTCTCAAA 59.422 50.000 0.00 0.00 0.00 2.69
258 259 3.203934 CCCTCTCAAATCCCCTCTCAAAT 59.796 47.826 0.00 0.00 0.00 2.32
259 260 4.459330 CCTCTCAAATCCCCTCTCAAATC 58.541 47.826 0.00 0.00 0.00 2.17
260 261 4.459330 CTCTCAAATCCCCTCTCAAATCC 58.541 47.826 0.00 0.00 0.00 3.01
261 262 3.203040 TCTCAAATCCCCTCTCAAATCCC 59.797 47.826 0.00 0.00 0.00 3.85
262 263 3.201363 TCAAATCCCCTCTCAAATCCCT 58.799 45.455 0.00 0.00 0.00 4.20
263 264 4.379875 TCAAATCCCCTCTCAAATCCCTA 58.620 43.478 0.00 0.00 0.00 3.53
264 265 4.413520 TCAAATCCCCTCTCAAATCCCTAG 59.586 45.833 0.00 0.00 0.00 3.02
265 266 3.734344 ATCCCCTCTCAAATCCCTAGT 57.266 47.619 0.00 0.00 0.00 2.57
266 267 3.508952 TCCCCTCTCAAATCCCTAGTT 57.491 47.619 0.00 0.00 0.00 2.24
267 268 3.115390 TCCCCTCTCAAATCCCTAGTTG 58.885 50.000 0.00 0.00 31.98 3.16
268 269 3.115390 CCCCTCTCAAATCCCTAGTTGA 58.885 50.000 0.00 0.00 37.36 3.18
269 270 3.718956 CCCCTCTCAAATCCCTAGTTGAT 59.281 47.826 0.00 0.00 38.86 2.57
270 271 4.166919 CCCCTCTCAAATCCCTAGTTGATT 59.833 45.833 0.18 0.18 38.86 2.57
271 272 5.372373 CCCTCTCAAATCCCTAGTTGATTC 58.628 45.833 5.49 0.00 38.86 2.52
272 273 5.104360 CCCTCTCAAATCCCTAGTTGATTCA 60.104 44.000 5.49 0.00 38.86 2.57
273 274 5.819901 CCTCTCAAATCCCTAGTTGATTCAC 59.180 44.000 5.49 0.00 38.86 3.18
274 275 6.373005 TCTCAAATCCCTAGTTGATTCACA 57.627 37.500 5.49 0.00 38.86 3.58
275 276 6.173339 TCTCAAATCCCTAGTTGATTCACAC 58.827 40.000 5.49 0.00 38.86 3.82
276 277 5.253330 TCAAATCCCTAGTTGATTCACACC 58.747 41.667 5.49 0.00 34.93 4.16
277 278 4.927267 AATCCCTAGTTGATTCACACCA 57.073 40.909 0.18 0.00 0.00 4.17
278 279 4.927267 ATCCCTAGTTGATTCACACCAA 57.073 40.909 0.00 0.00 0.00 3.67
279 280 4.715534 TCCCTAGTTGATTCACACCAAA 57.284 40.909 0.00 0.00 0.00 3.28
280 281 5.055265 TCCCTAGTTGATTCACACCAAAA 57.945 39.130 0.00 0.00 0.00 2.44
281 282 5.640147 TCCCTAGTTGATTCACACCAAAAT 58.360 37.500 0.00 0.00 0.00 1.82
282 283 6.074648 TCCCTAGTTGATTCACACCAAAATT 58.925 36.000 0.00 0.00 0.00 1.82
283 284 6.208599 TCCCTAGTTGATTCACACCAAAATTC 59.791 38.462 0.00 0.00 0.00 2.17
284 285 6.086222 CCTAGTTGATTCACACCAAAATTCG 58.914 40.000 0.00 0.00 0.00 3.34
285 286 5.514274 AGTTGATTCACACCAAAATTCGT 57.486 34.783 0.00 0.00 0.00 3.85
286 287 5.901552 AGTTGATTCACACCAAAATTCGTT 58.098 33.333 0.00 0.00 0.00 3.85
287 288 6.337356 AGTTGATTCACACCAAAATTCGTTT 58.663 32.000 0.00 0.00 0.00 3.60
288 289 6.475402 AGTTGATTCACACCAAAATTCGTTTC 59.525 34.615 0.00 0.00 0.00 2.78
289 290 6.142818 TGATTCACACCAAAATTCGTTTCT 57.857 33.333 0.00 0.00 0.00 2.52
290 291 6.568869 TGATTCACACCAAAATTCGTTTCTT 58.431 32.000 0.00 0.00 0.00 2.52
291 292 7.038659 TGATTCACACCAAAATTCGTTTCTTT 58.961 30.769 0.00 0.00 0.00 2.52
292 293 7.547370 TGATTCACACCAAAATTCGTTTCTTTT 59.453 29.630 0.00 0.00 0.00 2.27
293 294 7.659652 TTCACACCAAAATTCGTTTCTTTTT 57.340 28.000 0.00 0.00 0.00 1.94
316 317 8.974060 TTTTAGGGATTCAACAGTATCCATAC 57.026 34.615 3.65 0.00 41.75 2.39
317 318 7.931015 TTAGGGATTCAACAGTATCCATACT 57.069 36.000 3.65 0.00 44.03 2.12
318 319 6.426646 AGGGATTCAACAGTATCCATACTC 57.573 41.667 3.65 0.00 41.44 2.59
319 320 6.146760 AGGGATTCAACAGTATCCATACTCT 58.853 40.000 3.65 0.00 41.44 3.24
320 321 6.617371 AGGGATTCAACAGTATCCATACTCTT 59.383 38.462 3.65 0.00 41.44 2.85
321 322 7.127955 AGGGATTCAACAGTATCCATACTCTTT 59.872 37.037 3.65 0.00 41.44 2.52
322 323 7.775561 GGGATTCAACAGTATCCATACTCTTTT 59.224 37.037 3.65 0.00 41.44 2.27
323 324 9.832445 GGATTCAACAGTATCCATACTCTTTTA 57.168 33.333 0.00 0.00 41.44 1.52
326 327 9.871238 TTCAACAGTATCCATACTCTTTTAGAC 57.129 33.333 0.00 0.00 41.44 2.59
327 328 9.031537 TCAACAGTATCCATACTCTTTTAGACA 57.968 33.333 0.00 0.00 41.44 3.41
328 329 9.823647 CAACAGTATCCATACTCTTTTAGACAT 57.176 33.333 0.00 0.00 41.44 3.06
336 337 9.547753 TCCATACTCTTTTAGACATATTTGCTC 57.452 33.333 0.00 0.00 0.00 4.26
337 338 9.330063 CCATACTCTTTTAGACATATTTGCTCA 57.670 33.333 0.00 0.00 0.00 4.26
341 342 9.678260 ACTCTTTTAGACATATTTGCTCAAGAT 57.322 29.630 0.00 0.00 0.00 2.40
356 357 9.905713 TTTGCTCAAGATTAACTAATGTATCCT 57.094 29.630 0.00 0.00 0.00 3.24
374 375 8.418597 TGTATCCTAATCAATGTACTACCTCC 57.581 38.462 0.00 0.00 0.00 4.30
375 376 6.591750 ATCCTAATCAATGTACTACCTCCG 57.408 41.667 0.00 0.00 0.00 4.63
376 377 5.452255 TCCTAATCAATGTACTACCTCCGT 58.548 41.667 0.00 0.00 0.00 4.69
377 378 5.895534 TCCTAATCAATGTACTACCTCCGTT 59.104 40.000 0.00 0.00 0.00 4.44
378 379 6.381994 TCCTAATCAATGTACTACCTCCGTTT 59.618 38.462 0.00 0.00 0.00 3.60
379 380 6.479001 CCTAATCAATGTACTACCTCCGTTTG 59.521 42.308 0.00 0.00 0.00 2.93
380 381 5.670792 ATCAATGTACTACCTCCGTTTGA 57.329 39.130 0.00 0.00 0.00 2.69
381 382 5.471556 TCAATGTACTACCTCCGTTTGAA 57.528 39.130 0.00 0.00 0.00 2.69
382 383 6.045072 TCAATGTACTACCTCCGTTTGAAT 57.955 37.500 0.00 0.00 0.00 2.57
383 384 6.469410 TCAATGTACTACCTCCGTTTGAATT 58.531 36.000 0.00 0.00 0.00 2.17
384 385 6.938030 TCAATGTACTACCTCCGTTTGAATTT 59.062 34.615 0.00 0.00 0.00 1.82
385 386 8.095792 TCAATGTACTACCTCCGTTTGAATTTA 58.904 33.333 0.00 0.00 0.00 1.40
386 387 7.838771 ATGTACTACCTCCGTTTGAATTTAC 57.161 36.000 0.00 0.00 0.00 2.01
387 388 6.757237 TGTACTACCTCCGTTTGAATTTACA 58.243 36.000 0.00 0.00 0.00 2.41
388 389 7.215789 TGTACTACCTCCGTTTGAATTTACAA 58.784 34.615 0.00 0.00 0.00 2.41
389 390 6.796705 ACTACCTCCGTTTGAATTTACAAG 57.203 37.500 0.00 0.00 0.00 3.16
390 391 5.704053 ACTACCTCCGTTTGAATTTACAAGG 59.296 40.000 0.00 0.00 0.00 3.61
391 392 4.721132 ACCTCCGTTTGAATTTACAAGGA 58.279 39.130 0.00 2.76 0.00 3.36
392 393 5.321927 ACCTCCGTTTGAATTTACAAGGAT 58.678 37.500 0.00 0.00 0.00 3.24
393 394 5.773176 ACCTCCGTTTGAATTTACAAGGATT 59.227 36.000 0.00 0.00 0.00 3.01
394 395 6.943718 ACCTCCGTTTGAATTTACAAGGATTA 59.056 34.615 0.00 0.00 0.00 1.75
395 396 7.614192 ACCTCCGTTTGAATTTACAAGGATTAT 59.386 33.333 0.00 0.00 0.00 1.28
396 397 8.466798 CCTCCGTTTGAATTTACAAGGATTATT 58.533 33.333 0.00 0.00 0.00 1.40
397 398 9.855021 CTCCGTTTGAATTTACAAGGATTATTT 57.145 29.630 0.00 0.00 0.00 1.40
398 399 9.632807 TCCGTTTGAATTTACAAGGATTATTTG 57.367 29.630 0.00 0.00 0.00 2.32
399 400 9.632807 CCGTTTGAATTTACAAGGATTATTTGA 57.367 29.630 0.00 0.00 0.00 2.69
445 446 9.616156 TTTTAAGCCCGACTAAATATATCAACA 57.384 29.630 0.00 0.00 0.00 3.33
446 447 8.827177 TTAAGCCCGACTAAATATATCAACAG 57.173 34.615 0.00 0.00 0.00 3.16
447 448 6.665992 AGCCCGACTAAATATATCAACAGA 57.334 37.500 0.00 0.00 0.00 3.41
448 449 7.062749 AGCCCGACTAAATATATCAACAGAA 57.937 36.000 0.00 0.00 0.00 3.02
449 450 7.506114 AGCCCGACTAAATATATCAACAGAAA 58.494 34.615 0.00 0.00 0.00 2.52
450 451 7.990886 AGCCCGACTAAATATATCAACAGAAAA 59.009 33.333 0.00 0.00 0.00 2.29
451 452 8.784043 GCCCGACTAAATATATCAACAGAAAAT 58.216 33.333 0.00 0.00 0.00 1.82
464 465 7.928908 TCAACAGAAAATTAACATCAACAGC 57.071 32.000 0.00 0.00 0.00 4.40
465 466 7.715657 TCAACAGAAAATTAACATCAACAGCT 58.284 30.769 0.00 0.00 0.00 4.24
466 467 8.196771 TCAACAGAAAATTAACATCAACAGCTT 58.803 29.630 0.00 0.00 0.00 3.74
467 468 8.482429 CAACAGAAAATTAACATCAACAGCTTC 58.518 33.333 0.00 0.00 0.00 3.86
468 469 7.715657 ACAGAAAATTAACATCAACAGCTTCA 58.284 30.769 0.00 0.00 0.00 3.02
469 470 8.362639 ACAGAAAATTAACATCAACAGCTTCAT 58.637 29.630 0.00 0.00 0.00 2.57
470 471 9.844790 CAGAAAATTAACATCAACAGCTTCATA 57.155 29.630 0.00 0.00 0.00 2.15
519 520 8.939201 AGTCATTGTTACATCTAGTGATCTTG 57.061 34.615 0.00 0.00 0.00 3.02
520 521 8.753133 AGTCATTGTTACATCTAGTGATCTTGA 58.247 33.333 0.00 0.00 0.00 3.02
521 522 9.539825 GTCATTGTTACATCTAGTGATCTTGAT 57.460 33.333 0.00 0.00 36.80 2.57
530 531 9.761504 ACATCTAGTGATCTTGATTTACTCATG 57.238 33.333 0.00 0.00 34.85 3.07
531 532 9.761504 CATCTAGTGATCTTGATTTACTCATGT 57.238 33.333 0.00 0.00 34.85 3.21
536 537 9.761504 AGTGATCTTGATTTACTCATGTAGATG 57.238 33.333 0.00 0.00 31.86 2.90
537 538 9.539825 GTGATCTTGATTTACTCATGTAGATGT 57.460 33.333 0.00 0.00 31.86 3.06
538 539 9.538508 TGATCTTGATTTACTCATGTAGATGTG 57.461 33.333 0.00 0.00 31.86 3.21
539 540 8.899427 ATCTTGATTTACTCATGTAGATGTGG 57.101 34.615 6.84 1.57 30.96 4.17
540 541 7.851228 TCTTGATTTACTCATGTAGATGTGGT 58.149 34.615 6.84 6.66 32.72 4.16
541 542 8.321353 TCTTGATTTACTCATGTAGATGTGGTT 58.679 33.333 6.84 0.00 32.72 3.67
542 543 8.862325 TTGATTTACTCATGTAGATGTGGTTT 57.138 30.769 6.84 0.00 32.72 3.27
543 544 8.862325 TGATTTACTCATGTAGATGTGGTTTT 57.138 30.769 6.84 0.00 0.00 2.43
544 545 9.295825 TGATTTACTCATGTAGATGTGGTTTTT 57.704 29.630 6.84 0.00 0.00 1.94
586 587 9.850628 AAACTGTAAAAGGTTTGACTTTAAGAC 57.149 29.630 0.00 0.00 39.63 3.01
587 588 8.570068 ACTGTAAAAGGTTTGACTTTAAGACA 57.430 30.769 0.00 0.00 39.63 3.41
588 589 9.016438 ACTGTAAAAGGTTTGACTTTAAGACAA 57.984 29.630 5.83 5.83 39.63 3.18
589 590 9.285770 CTGTAAAAGGTTTGACTTTAAGACAAC 57.714 33.333 9.14 5.60 39.63 3.32
590 591 8.245491 TGTAAAAGGTTTGACTTTAAGACAACC 58.755 33.333 9.14 12.65 39.63 3.77
591 592 5.494632 AAGGTTTGACTTTAAGACAACCG 57.505 39.130 9.14 0.00 30.25 4.44
592 593 4.773013 AGGTTTGACTTTAAGACAACCGA 58.227 39.130 9.14 0.00 30.25 4.69
593 594 5.187687 AGGTTTGACTTTAAGACAACCGAA 58.812 37.500 9.14 0.00 30.25 4.30
594 595 5.648960 AGGTTTGACTTTAAGACAACCGAAA 59.351 36.000 9.14 0.00 30.25 3.46
595 596 6.320418 AGGTTTGACTTTAAGACAACCGAAAT 59.680 34.615 9.14 0.00 30.25 2.17
596 597 6.416750 GGTTTGACTTTAAGACAACCGAAATG 59.583 38.462 9.14 0.00 30.25 2.32
597 598 6.928979 TTGACTTTAAGACAACCGAAATGA 57.071 33.333 5.83 0.00 0.00 2.57
598 599 6.539649 TGACTTTAAGACAACCGAAATGAG 57.460 37.500 0.00 0.00 0.00 2.90
599 600 5.049680 TGACTTTAAGACAACCGAAATGAGC 60.050 40.000 0.00 0.00 0.00 4.26
600 601 4.215613 ACTTTAAGACAACCGAAATGAGCC 59.784 41.667 0.00 0.00 0.00 4.70
601 602 2.568623 AAGACAACCGAAATGAGCCT 57.431 45.000 0.00 0.00 0.00 4.58
602 603 2.568623 AGACAACCGAAATGAGCCTT 57.431 45.000 0.00 0.00 0.00 4.35
603 604 2.154462 AGACAACCGAAATGAGCCTTG 58.846 47.619 0.00 0.00 0.00 3.61
604 605 1.880027 GACAACCGAAATGAGCCTTGT 59.120 47.619 0.00 0.00 0.00 3.16
605 606 3.071479 GACAACCGAAATGAGCCTTGTA 58.929 45.455 0.00 0.00 0.00 2.41
606 607 3.482436 ACAACCGAAATGAGCCTTGTAA 58.518 40.909 0.00 0.00 0.00 2.41
607 608 3.886505 ACAACCGAAATGAGCCTTGTAAA 59.113 39.130 0.00 0.00 0.00 2.01
608 609 4.339814 ACAACCGAAATGAGCCTTGTAAAA 59.660 37.500 0.00 0.00 0.00 1.52
609 610 4.499037 ACCGAAATGAGCCTTGTAAAAC 57.501 40.909 0.00 0.00 0.00 2.43
610 611 3.058501 ACCGAAATGAGCCTTGTAAAACG 60.059 43.478 0.00 0.00 0.00 3.60
611 612 3.488489 CGAAATGAGCCTTGTAAAACGG 58.512 45.455 0.00 0.00 0.00 4.44
612 613 3.187637 CGAAATGAGCCTTGTAAAACGGA 59.812 43.478 0.00 0.00 0.00 4.69
613 614 4.669197 CGAAATGAGCCTTGTAAAACGGAG 60.669 45.833 0.00 0.00 0.00 4.63
614 615 2.178912 TGAGCCTTGTAAAACGGAGG 57.821 50.000 0.00 0.00 0.00 4.30
615 616 1.418637 TGAGCCTTGTAAAACGGAGGT 59.581 47.619 0.00 0.00 0.00 3.85
616 617 2.633967 TGAGCCTTGTAAAACGGAGGTA 59.366 45.455 0.00 0.00 0.00 3.08
617 618 3.259902 GAGCCTTGTAAAACGGAGGTAG 58.740 50.000 0.00 0.00 0.00 3.18
618 619 2.636403 AGCCTTGTAAAACGGAGGTAGT 59.364 45.455 0.00 0.00 0.00 2.73
619 620 3.834231 AGCCTTGTAAAACGGAGGTAGTA 59.166 43.478 0.00 0.00 0.00 1.82
620 621 4.468868 AGCCTTGTAAAACGGAGGTAGTAT 59.531 41.667 0.00 0.00 0.00 2.12
621 622 4.569564 GCCTTGTAAAACGGAGGTAGTATG 59.430 45.833 0.00 0.00 0.00 2.39
622 623 4.569564 CCTTGTAAAACGGAGGTAGTATGC 59.430 45.833 0.00 0.00 0.00 3.14
623 624 5.410355 TTGTAAAACGGAGGTAGTATGCT 57.590 39.130 0.00 0.00 0.00 3.79
624 625 5.410355 TGTAAAACGGAGGTAGTATGCTT 57.590 39.130 0.00 0.00 0.00 3.91
625 626 5.797051 TGTAAAACGGAGGTAGTATGCTTT 58.203 37.500 0.00 0.00 0.00 3.51
626 627 6.232692 TGTAAAACGGAGGTAGTATGCTTTT 58.767 36.000 0.00 0.00 0.00 2.27
627 628 6.711645 TGTAAAACGGAGGTAGTATGCTTTTT 59.288 34.615 0.00 0.00 0.00 1.94
779 780 1.208052 ACCAACATGCGCATCTACTCT 59.792 47.619 22.51 0.00 0.00 3.24
787 788 0.457443 CGCATCTACTCTGTCCAGCA 59.543 55.000 0.00 0.00 0.00 4.41
1170 1184 2.930019 AGCACCAGGGCACAGCTA 60.930 61.111 0.00 0.00 35.83 3.32
1292 1306 2.209064 GACAGCGGGCTCGTCTACAA 62.209 60.000 8.30 0.00 38.89 2.41
1317 1331 1.522355 CTTCAGCGCCATGGTCGAT 60.522 57.895 26.00 19.72 0.00 3.59
1368 1382 3.066190 CCGAGCGTGAGGGTGGTA 61.066 66.667 0.00 0.00 0.00 3.25
1518 1532 0.586319 ACGTGTTCGCCATGTTCAAG 59.414 50.000 0.00 0.00 40.46 3.02
1538 1552 3.647771 GAACCAGAAGCCCGGGGT 61.648 66.667 22.45 22.45 34.13 4.95
1545 1559 2.529389 AAGCCCGGGGTTGAGACT 60.529 61.111 36.25 12.32 34.29 3.24
1569 1583 1.918957 AGGCACTTTGGGCTCTTCTAT 59.081 47.619 0.00 0.00 39.91 1.98
1583 1597 2.739913 TCTTCTATCCCAACAAAACGCG 59.260 45.455 3.53 3.53 0.00 6.01
1609 1623 4.290985 TGTACCCCATCAATTTCAGAGGAA 59.709 41.667 0.00 0.00 0.00 3.36
1610 1624 4.614967 ACCCCATCAATTTCAGAGGAAT 57.385 40.909 0.00 0.00 31.93 3.01
1616 1633 6.552350 CCCATCAATTTCAGAGGAATATTGGT 59.448 38.462 0.00 0.00 35.10 3.67
1617 1634 7.070322 CCCATCAATTTCAGAGGAATATTGGTT 59.930 37.037 0.00 0.00 35.10 3.67
1632 1649 3.522731 GTTGCGGCCAACCACACA 61.523 61.111 2.24 0.00 44.37 3.72
1638 1655 1.739667 GGCCAACCACACAAACTCC 59.260 57.895 0.00 0.00 35.26 3.85
1645 1662 1.535204 CCACACAAACTCCCATGGGC 61.535 60.000 27.41 0.00 34.68 5.36
1661 1681 0.036294 GGGCTTGGTGGACACTAGAC 60.036 60.000 0.00 2.89 0.00 2.59
1667 1693 3.169512 TGGTGGACACTAGACTGATGA 57.830 47.619 0.00 0.00 0.00 2.92
1675 1701 5.289675 GGACACTAGACTGATGAACATTTCG 59.710 44.000 0.00 0.00 0.00 3.46
1749 1784 3.859443 TGCATAATGGCAAACATGGAAC 58.141 40.909 0.00 0.00 41.65 3.62
1750 1785 3.197265 GCATAATGGCAAACATGGAACC 58.803 45.455 0.00 0.00 40.44 3.62
1751 1786 3.795877 CATAATGGCAAACATGGAACCC 58.204 45.455 0.00 0.00 40.44 4.11
1752 1787 0.983467 AATGGCAAACATGGAACCCC 59.017 50.000 0.00 0.00 40.44 4.95
1753 1788 0.116940 ATGGCAAACATGGAACCCCT 59.883 50.000 0.00 0.00 38.70 4.79
1754 1789 0.105246 TGGCAAACATGGAACCCCTT 60.105 50.000 0.00 0.00 0.00 3.95
1755 1790 0.608130 GGCAAACATGGAACCCCTTC 59.392 55.000 0.00 0.00 0.00 3.46
1756 1791 0.608130 GCAAACATGGAACCCCTTCC 59.392 55.000 0.00 0.00 45.89 3.46
1757 1792 1.266178 CAAACATGGAACCCCTTCCC 58.734 55.000 0.00 0.00 45.17 3.97
2488 2523 1.056700 GCCCAGATCTAGGCCCTTCA 61.057 60.000 20.41 0.00 43.76 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.622064 ACACTTTTTCAGCGAGACCT 57.378 45.000 0.00 0.00 0.00 3.85
2 3 3.692791 AAACACTTTTTCAGCGAGACC 57.307 42.857 0.00 0.00 0.00 3.85
28 29 8.321353 TCATATAACCCCATCTTGCTACATAAG 58.679 37.037 0.00 0.00 0.00 1.73
29 30 8.213489 TCATATAACCCCATCTTGCTACATAA 57.787 34.615 0.00 0.00 0.00 1.90
30 31 7.806680 TCATATAACCCCATCTTGCTACATA 57.193 36.000 0.00 0.00 0.00 2.29
31 32 6.702449 TCATATAACCCCATCTTGCTACAT 57.298 37.500 0.00 0.00 0.00 2.29
32 33 6.044287 ACATCATATAACCCCATCTTGCTACA 59.956 38.462 0.00 0.00 0.00 2.74
33 34 6.372659 CACATCATATAACCCCATCTTGCTAC 59.627 42.308 0.00 0.00 0.00 3.58
34 35 6.044287 ACACATCATATAACCCCATCTTGCTA 59.956 38.462 0.00 0.00 0.00 3.49
35 36 5.163055 ACACATCATATAACCCCATCTTGCT 60.163 40.000 0.00 0.00 0.00 3.91
36 37 5.072741 ACACATCATATAACCCCATCTTGC 58.927 41.667 0.00 0.00 0.00 4.01
37 38 7.428020 CAAACACATCATATAACCCCATCTTG 58.572 38.462 0.00 0.00 0.00 3.02
38 39 6.040842 GCAAACACATCATATAACCCCATCTT 59.959 38.462 0.00 0.00 0.00 2.40
39 40 5.536161 GCAAACACATCATATAACCCCATCT 59.464 40.000 0.00 0.00 0.00 2.90
40 41 5.278957 GGCAAACACATCATATAACCCCATC 60.279 44.000 0.00 0.00 0.00 3.51
41 42 4.588528 GGCAAACACATCATATAACCCCAT 59.411 41.667 0.00 0.00 0.00 4.00
42 43 3.957497 GGCAAACACATCATATAACCCCA 59.043 43.478 0.00 0.00 0.00 4.96
43 44 3.320826 GGGCAAACACATCATATAACCCC 59.679 47.826 0.00 0.00 0.00 4.95
44 45 3.320826 GGGGCAAACACATCATATAACCC 59.679 47.826 0.00 0.00 0.00 4.11
45 46 3.957497 TGGGGCAAACACATCATATAACC 59.043 43.478 0.00 0.00 0.00 2.85
46 47 5.536161 AGATGGGGCAAACACATCATATAAC 59.464 40.000 11.67 0.00 42.55 1.89
47 48 5.704354 AGATGGGGCAAACACATCATATAA 58.296 37.500 11.67 0.00 42.55 0.98
48 49 5.323382 AGATGGGGCAAACACATCATATA 57.677 39.130 11.67 0.00 42.55 0.86
49 50 4.188937 AGATGGGGCAAACACATCATAT 57.811 40.909 11.67 0.00 42.55 1.78
50 51 3.668141 AGATGGGGCAAACACATCATA 57.332 42.857 11.67 0.00 42.55 2.15
51 52 2.498481 CAAGATGGGGCAAACACATCAT 59.502 45.455 11.67 0.00 42.55 2.45
52 53 1.894466 CAAGATGGGGCAAACACATCA 59.106 47.619 11.67 0.00 42.55 3.07
53 54 2.165030 CTCAAGATGGGGCAAACACATC 59.835 50.000 1.46 1.46 40.90 3.06
54 55 2.173519 CTCAAGATGGGGCAAACACAT 58.826 47.619 0.00 0.00 0.00 3.21
55 56 1.619654 CTCAAGATGGGGCAAACACA 58.380 50.000 0.00 0.00 0.00 3.72
56 57 0.890683 CCTCAAGATGGGGCAAACAC 59.109 55.000 0.00 0.00 26.78 3.32
57 58 0.251742 CCCTCAAGATGGGGCAAACA 60.252 55.000 0.00 0.00 36.42 2.83
58 59 2.583472 CCCTCAAGATGGGGCAAAC 58.417 57.895 0.00 0.00 36.42 2.93
64 65 0.916358 ACACTCCCCCTCAAGATGGG 60.916 60.000 3.64 3.64 44.19 4.00
65 66 0.995024 AACACTCCCCCTCAAGATGG 59.005 55.000 0.00 0.00 0.00 3.51
66 67 1.630369 TCAACACTCCCCCTCAAGATG 59.370 52.381 0.00 0.00 0.00 2.90
67 68 1.912043 CTCAACACTCCCCCTCAAGAT 59.088 52.381 0.00 0.00 0.00 2.40
68 69 1.352083 CTCAACACTCCCCCTCAAGA 58.648 55.000 0.00 0.00 0.00 3.02
69 70 1.059913 ACTCAACACTCCCCCTCAAG 58.940 55.000 0.00 0.00 0.00 3.02
70 71 1.518367 AACTCAACACTCCCCCTCAA 58.482 50.000 0.00 0.00 0.00 3.02
71 72 1.518367 AAACTCAACACTCCCCCTCA 58.482 50.000 0.00 0.00 0.00 3.86
72 73 2.638363 ACTAAACTCAACACTCCCCCTC 59.362 50.000 0.00 0.00 0.00 4.30
73 74 2.372172 CACTAAACTCAACACTCCCCCT 59.628 50.000 0.00 0.00 0.00 4.79
74 75 2.552373 CCACTAAACTCAACACTCCCCC 60.552 54.545 0.00 0.00 0.00 5.40
75 76 2.105993 ACCACTAAACTCAACACTCCCC 59.894 50.000 0.00 0.00 0.00 4.81
76 77 3.487120 ACCACTAAACTCAACACTCCC 57.513 47.619 0.00 0.00 0.00 4.30
77 78 7.506328 AATTTACCACTAAACTCAACACTCC 57.494 36.000 0.00 0.00 0.00 3.85
78 79 8.403236 ACAAATTTACCACTAAACTCAACACTC 58.597 33.333 0.00 0.00 0.00 3.51
79 80 8.288689 ACAAATTTACCACTAAACTCAACACT 57.711 30.769 0.00 0.00 0.00 3.55
124 125 9.391006 GTCCTCCTGACATTTATAATTTACACA 57.609 33.333 0.00 0.00 43.85 3.72
140 141 4.281182 TCTTTACACTCTTGTCCTCCTGAC 59.719 45.833 0.00 0.00 44.72 3.51
141 142 4.480115 TCTTTACACTCTTGTCCTCCTGA 58.520 43.478 0.00 0.00 37.15 3.86
142 143 4.873746 TCTTTACACTCTTGTCCTCCTG 57.126 45.455 0.00 0.00 37.15 3.86
143 144 4.284746 CCTTCTTTACACTCTTGTCCTCCT 59.715 45.833 0.00 0.00 37.15 3.69
144 145 4.283722 TCCTTCTTTACACTCTTGTCCTCC 59.716 45.833 0.00 0.00 37.15 4.30
145 146 5.470047 TCCTTCTTTACACTCTTGTCCTC 57.530 43.478 0.00 0.00 37.15 3.71
146 147 5.602978 TCTTCCTTCTTTACACTCTTGTCCT 59.397 40.000 0.00 0.00 37.15 3.85
147 148 5.855045 TCTTCCTTCTTTACACTCTTGTCC 58.145 41.667 0.00 0.00 37.15 4.02
148 149 6.750148 TCTCTTCCTTCTTTACACTCTTGTC 58.250 40.000 0.00 0.00 37.15 3.18
149 150 6.551601 TCTCTCTTCCTTCTTTACACTCTTGT 59.448 38.462 0.00 0.00 40.02 3.16
150 151 6.987386 TCTCTCTTCCTTCTTTACACTCTTG 58.013 40.000 0.00 0.00 0.00 3.02
151 152 7.007723 TCTCTCTCTTCCTTCTTTACACTCTT 58.992 38.462 0.00 0.00 0.00 2.85
152 153 6.548321 TCTCTCTCTTCCTTCTTTACACTCT 58.452 40.000 0.00 0.00 0.00 3.24
153 154 6.827586 TCTCTCTCTTCCTTCTTTACACTC 57.172 41.667 0.00 0.00 0.00 3.51
154 155 8.887264 TTATCTCTCTCTTCCTTCTTTACACT 57.113 34.615 0.00 0.00 0.00 3.55
155 156 8.194769 CCTTATCTCTCTCTTCCTTCTTTACAC 58.805 40.741 0.00 0.00 0.00 2.90
156 157 8.116669 TCCTTATCTCTCTCTTCCTTCTTTACA 58.883 37.037 0.00 0.00 0.00 2.41
157 158 8.528044 TCCTTATCTCTCTCTTCCTTCTTTAC 57.472 38.462 0.00 0.00 0.00 2.01
158 159 9.548631 TTTCCTTATCTCTCTCTTCCTTCTTTA 57.451 33.333 0.00 0.00 0.00 1.85
159 160 8.442660 TTTCCTTATCTCTCTCTTCCTTCTTT 57.557 34.615 0.00 0.00 0.00 2.52
160 161 7.125659 CCTTTCCTTATCTCTCTCTTCCTTCTT 59.874 40.741 0.00 0.00 0.00 2.52
161 162 6.611236 CCTTTCCTTATCTCTCTCTTCCTTCT 59.389 42.308 0.00 0.00 0.00 2.85
162 163 6.609616 TCCTTTCCTTATCTCTCTCTTCCTTC 59.390 42.308 0.00 0.00 0.00 3.46
163 164 6.507568 TCCTTTCCTTATCTCTCTCTTCCTT 58.492 40.000 0.00 0.00 0.00 3.36
164 165 6.098716 TCCTTTCCTTATCTCTCTCTTCCT 57.901 41.667 0.00 0.00 0.00 3.36
165 166 6.800072 TTCCTTTCCTTATCTCTCTCTTCC 57.200 41.667 0.00 0.00 0.00 3.46
166 167 9.362151 TCTATTCCTTTCCTTATCTCTCTCTTC 57.638 37.037 0.00 0.00 0.00 2.87
167 168 9.143155 GTCTATTCCTTTCCTTATCTCTCTCTT 57.857 37.037 0.00 0.00 0.00 2.85
168 169 7.447238 CGTCTATTCCTTTCCTTATCTCTCTCT 59.553 40.741 0.00 0.00 0.00 3.10
169 170 7.308951 CCGTCTATTCCTTTCCTTATCTCTCTC 60.309 44.444 0.00 0.00 0.00 3.20
170 171 6.492087 CCGTCTATTCCTTTCCTTATCTCTCT 59.508 42.308 0.00 0.00 0.00 3.10
171 172 6.683715 CCGTCTATTCCTTTCCTTATCTCTC 58.316 44.000 0.00 0.00 0.00 3.20
172 173 5.011227 GCCGTCTATTCCTTTCCTTATCTCT 59.989 44.000 0.00 0.00 0.00 3.10
173 174 5.221461 TGCCGTCTATTCCTTTCCTTATCTC 60.221 44.000 0.00 0.00 0.00 2.75
174 175 4.654262 TGCCGTCTATTCCTTTCCTTATCT 59.346 41.667 0.00 0.00 0.00 1.98
175 176 4.957296 TGCCGTCTATTCCTTTCCTTATC 58.043 43.478 0.00 0.00 0.00 1.75
176 177 4.743955 GCTGCCGTCTATTCCTTTCCTTAT 60.744 45.833 0.00 0.00 0.00 1.73
177 178 3.431766 GCTGCCGTCTATTCCTTTCCTTA 60.432 47.826 0.00 0.00 0.00 2.69
178 179 2.681097 GCTGCCGTCTATTCCTTTCCTT 60.681 50.000 0.00 0.00 0.00 3.36
179 180 1.134371 GCTGCCGTCTATTCCTTTCCT 60.134 52.381 0.00 0.00 0.00 3.36
180 181 1.134371 AGCTGCCGTCTATTCCTTTCC 60.134 52.381 0.00 0.00 0.00 3.13
181 182 2.205911 GAGCTGCCGTCTATTCCTTTC 58.794 52.381 0.00 0.00 0.00 2.62
182 183 1.555075 TGAGCTGCCGTCTATTCCTTT 59.445 47.619 0.00 0.00 0.00 3.11
183 184 1.195115 TGAGCTGCCGTCTATTCCTT 58.805 50.000 0.00 0.00 0.00 3.36
184 185 1.069823 CATGAGCTGCCGTCTATTCCT 59.930 52.381 0.00 0.00 0.00 3.36
185 186 1.069204 TCATGAGCTGCCGTCTATTCC 59.931 52.381 0.00 0.00 0.00 3.01
186 187 2.515926 TCATGAGCTGCCGTCTATTC 57.484 50.000 0.00 0.00 0.00 1.75
187 188 2.103771 ACATCATGAGCTGCCGTCTATT 59.896 45.455 0.09 0.00 0.00 1.73
188 189 1.690893 ACATCATGAGCTGCCGTCTAT 59.309 47.619 0.09 0.00 0.00 1.98
189 190 1.114627 ACATCATGAGCTGCCGTCTA 58.885 50.000 0.09 0.00 0.00 2.59
190 191 0.251354 AACATCATGAGCTGCCGTCT 59.749 50.000 0.09 0.00 0.00 4.18
191 192 0.376152 CAACATCATGAGCTGCCGTC 59.624 55.000 0.09 0.00 0.00 4.79
192 193 1.651240 GCAACATCATGAGCTGCCGT 61.651 55.000 13.02 0.00 0.00 5.68
193 194 1.063649 GCAACATCATGAGCTGCCG 59.936 57.895 13.02 0.00 0.00 5.69
194 195 0.381089 GAGCAACATCATGAGCTGCC 59.619 55.000 18.01 9.56 33.88 4.85
195 196 0.381089 GGAGCAACATCATGAGCTGC 59.619 55.000 11.55 13.61 33.88 5.25
196 197 1.671328 CTGGAGCAACATCATGAGCTG 59.329 52.381 11.55 3.41 33.88 4.24
197 198 1.281287 ACTGGAGCAACATCATGAGCT 59.719 47.619 6.88 6.88 35.68 4.09
198 199 1.747709 ACTGGAGCAACATCATGAGC 58.252 50.000 0.09 0.00 0.00 4.26
199 200 3.607741 AGAACTGGAGCAACATCATGAG 58.392 45.455 0.09 0.00 0.00 2.90
200 201 3.262660 AGAGAACTGGAGCAACATCATGA 59.737 43.478 0.00 0.00 0.00 3.07
201 202 3.374367 CAGAGAACTGGAGCAACATCATG 59.626 47.826 0.00 0.00 40.14 3.07
202 203 3.607741 CAGAGAACTGGAGCAACATCAT 58.392 45.455 0.00 0.00 40.14 2.45
203 204 3.049708 CAGAGAACTGGAGCAACATCA 57.950 47.619 0.00 0.00 40.14 3.07
208 209 9.525112 AGTTCACAATACAGAGAACTGGAGCAA 62.525 40.741 5.93 0.00 44.19 3.91
209 210 8.147115 AGTTCACAATACAGAGAACTGGAGCA 62.147 42.308 5.93 0.00 44.19 4.26
210 211 5.798316 AGTTCACAATACAGAGAACTGGAGC 60.798 44.000 5.93 0.00 44.19 4.70
211 212 5.788450 AGTTCACAATACAGAGAACTGGAG 58.212 41.667 5.93 0.00 44.19 3.86
212 213 5.279506 GGAGTTCACAATACAGAGAACTGGA 60.280 44.000 10.95 0.00 45.28 3.86
213 214 4.932200 GGAGTTCACAATACAGAGAACTGG 59.068 45.833 10.95 0.00 45.28 4.00
214 215 4.932200 GGGAGTTCACAATACAGAGAACTG 59.068 45.833 10.95 0.00 45.28 3.16
216 217 4.020128 AGGGGAGTTCACAATACAGAGAAC 60.020 45.833 0.00 0.00 38.74 3.01
217 218 4.168101 AGGGGAGTTCACAATACAGAGAA 58.832 43.478 0.00 0.00 0.00 2.87
218 219 3.769844 GAGGGGAGTTCACAATACAGAGA 59.230 47.826 0.00 0.00 0.00 3.10
219 220 3.772025 AGAGGGGAGTTCACAATACAGAG 59.228 47.826 0.00 0.00 0.00 3.35
220 221 3.769844 GAGAGGGGAGTTCACAATACAGA 59.230 47.826 0.00 0.00 0.00 3.41
221 222 3.515502 TGAGAGGGGAGTTCACAATACAG 59.484 47.826 0.00 0.00 0.00 2.74
222 223 3.516586 TGAGAGGGGAGTTCACAATACA 58.483 45.455 0.00 0.00 0.00 2.29
223 224 4.553330 TTGAGAGGGGAGTTCACAATAC 57.447 45.455 0.00 0.00 0.00 1.89
224 225 5.339200 GGATTTGAGAGGGGAGTTCACAATA 60.339 44.000 0.00 0.00 0.00 1.90
225 226 4.568592 GGATTTGAGAGGGGAGTTCACAAT 60.569 45.833 0.00 0.00 0.00 2.71
226 227 3.244911 GGATTTGAGAGGGGAGTTCACAA 60.245 47.826 0.00 0.00 0.00 3.33
227 228 2.305927 GGATTTGAGAGGGGAGTTCACA 59.694 50.000 0.00 0.00 0.00 3.58
228 229 2.356227 GGGATTTGAGAGGGGAGTTCAC 60.356 54.545 0.00 0.00 0.00 3.18
229 230 1.916181 GGGATTTGAGAGGGGAGTTCA 59.084 52.381 0.00 0.00 0.00 3.18
230 231 1.213182 GGGGATTTGAGAGGGGAGTTC 59.787 57.143 0.00 0.00 0.00 3.01
231 232 1.203622 AGGGGATTTGAGAGGGGAGTT 60.204 52.381 0.00 0.00 0.00 3.01
232 233 0.423544 AGGGGATTTGAGAGGGGAGT 59.576 55.000 0.00 0.00 0.00 3.85
233 234 1.135960 GAGGGGATTTGAGAGGGGAG 58.864 60.000 0.00 0.00 0.00 4.30
234 235 0.725133 AGAGGGGATTTGAGAGGGGA 59.275 55.000 0.00 0.00 0.00 4.81
235 236 1.135960 GAGAGGGGATTTGAGAGGGG 58.864 60.000 0.00 0.00 0.00 4.79
236 237 1.885049 TGAGAGGGGATTTGAGAGGG 58.115 55.000 0.00 0.00 0.00 4.30
237 238 4.459330 GATTTGAGAGGGGATTTGAGAGG 58.541 47.826 0.00 0.00 0.00 3.69
238 239 4.459330 GGATTTGAGAGGGGATTTGAGAG 58.541 47.826 0.00 0.00 0.00 3.20
239 240 3.203040 GGGATTTGAGAGGGGATTTGAGA 59.797 47.826 0.00 0.00 0.00 3.27
240 241 3.203934 AGGGATTTGAGAGGGGATTTGAG 59.796 47.826 0.00 0.00 0.00 3.02
241 242 3.201363 AGGGATTTGAGAGGGGATTTGA 58.799 45.455 0.00 0.00 0.00 2.69
242 243 3.677156 AGGGATTTGAGAGGGGATTTG 57.323 47.619 0.00 0.00 0.00 2.32
243 244 4.384465 ACTAGGGATTTGAGAGGGGATTT 58.616 43.478 0.00 0.00 0.00 2.17
244 245 4.027782 ACTAGGGATTTGAGAGGGGATT 57.972 45.455 0.00 0.00 0.00 3.01
245 246 3.718956 CAACTAGGGATTTGAGAGGGGAT 59.281 47.826 0.00 0.00 0.00 3.85
246 247 3.115390 CAACTAGGGATTTGAGAGGGGA 58.885 50.000 0.00 0.00 0.00 4.81
247 248 3.115390 TCAACTAGGGATTTGAGAGGGG 58.885 50.000 0.00 0.00 0.00 4.79
248 249 5.104360 TGAATCAACTAGGGATTTGAGAGGG 60.104 44.000 11.71 0.00 35.25 4.30
249 250 5.819901 GTGAATCAACTAGGGATTTGAGAGG 59.180 44.000 11.71 0.00 35.25 3.69
250 251 6.314896 GTGTGAATCAACTAGGGATTTGAGAG 59.685 42.308 11.71 0.00 35.25 3.20
251 252 6.173339 GTGTGAATCAACTAGGGATTTGAGA 58.827 40.000 11.71 1.39 35.25 3.27
252 253 5.355350 GGTGTGAATCAACTAGGGATTTGAG 59.645 44.000 11.71 0.00 35.25 3.02
253 254 5.222027 TGGTGTGAATCAACTAGGGATTTGA 60.222 40.000 11.71 4.99 35.23 2.69
254 255 5.009631 TGGTGTGAATCAACTAGGGATTTG 58.990 41.667 11.71 0.00 35.23 2.32
255 256 5.255397 TGGTGTGAATCAACTAGGGATTT 57.745 39.130 11.71 0.00 35.23 2.17
256 257 4.927267 TGGTGTGAATCAACTAGGGATT 57.073 40.909 10.60 10.60 37.67 3.01
257 258 4.927267 TTGGTGTGAATCAACTAGGGAT 57.073 40.909 0.00 0.00 34.34 3.85
258 259 4.715534 TTTGGTGTGAATCAACTAGGGA 57.284 40.909 0.00 0.00 34.34 4.20
259 260 5.982890 ATTTTGGTGTGAATCAACTAGGG 57.017 39.130 0.00 0.00 34.34 3.53
260 261 6.086222 CGAATTTTGGTGTGAATCAACTAGG 58.914 40.000 0.00 0.00 34.34 3.02
261 262 6.668323 ACGAATTTTGGTGTGAATCAACTAG 58.332 36.000 0.00 0.00 34.34 2.57
262 263 6.627395 ACGAATTTTGGTGTGAATCAACTA 57.373 33.333 0.00 0.00 34.34 2.24
263 264 5.514274 ACGAATTTTGGTGTGAATCAACT 57.486 34.783 0.00 0.00 34.34 3.16
264 265 6.475402 AGAAACGAATTTTGGTGTGAATCAAC 59.525 34.615 0.00 0.00 0.00 3.18
265 266 6.568869 AGAAACGAATTTTGGTGTGAATCAA 58.431 32.000 0.00 0.00 0.00 2.57
266 267 6.142818 AGAAACGAATTTTGGTGTGAATCA 57.857 33.333 0.00 0.00 0.00 2.57
267 268 7.463469 AAAGAAACGAATTTTGGTGTGAATC 57.537 32.000 0.00 0.00 0.00 2.52
268 269 7.841915 AAAAGAAACGAATTTTGGTGTGAAT 57.158 28.000 0.00 0.00 0.00 2.57
269 270 7.659652 AAAAAGAAACGAATTTTGGTGTGAA 57.340 28.000 0.00 0.00 0.00 3.18
290 291 9.403583 GTATGGATACTGTTGAATCCCTAAAAA 57.596 33.333 5.79 0.00 40.91 1.94
291 292 8.778059 AGTATGGATACTGTTGAATCCCTAAAA 58.222 33.333 5.79 0.00 41.77 1.52
292 293 8.331931 AGTATGGATACTGTTGAATCCCTAAA 57.668 34.615 5.79 0.00 41.77 1.85
293 294 7.789831 AGAGTATGGATACTGTTGAATCCCTAA 59.210 37.037 3.99 0.00 43.27 2.69
294 295 7.306013 AGAGTATGGATACTGTTGAATCCCTA 58.694 38.462 3.99 0.00 43.27 3.53
295 296 6.146760 AGAGTATGGATACTGTTGAATCCCT 58.853 40.000 3.99 0.00 43.27 4.20
296 297 6.426646 AGAGTATGGATACTGTTGAATCCC 57.573 41.667 3.99 0.00 43.27 3.85
297 298 8.738645 AAAAGAGTATGGATACTGTTGAATCC 57.261 34.615 9.32 1.83 43.46 3.01
300 301 9.871238 GTCTAAAAGAGTATGGATACTGTTGAA 57.129 33.333 9.32 2.15 43.46 2.69
301 302 9.031537 TGTCTAAAAGAGTATGGATACTGTTGA 57.968 33.333 9.32 2.02 43.46 3.18
302 303 9.823647 ATGTCTAAAAGAGTATGGATACTGTTG 57.176 33.333 9.32 0.05 43.46 3.33
310 311 9.547753 GAGCAAATATGTCTAAAAGAGTATGGA 57.452 33.333 0.00 0.00 0.00 3.41
311 312 9.330063 TGAGCAAATATGTCTAAAAGAGTATGG 57.670 33.333 0.00 0.00 0.00 2.74
315 316 9.678260 ATCTTGAGCAAATATGTCTAAAAGAGT 57.322 29.630 0.00 0.00 29.62 3.24
330 331 9.905713 AGGATACATTAGTTAATCTTGAGCAAA 57.094 29.630 0.00 0.00 41.41 3.68
348 349 9.036980 GGAGGTAGTACATTGATTAGGATACAT 57.963 37.037 2.06 0.00 41.41 2.29
349 350 7.176165 CGGAGGTAGTACATTGATTAGGATACA 59.824 40.741 2.06 0.00 41.41 2.29
350 351 7.176340 ACGGAGGTAGTACATTGATTAGGATAC 59.824 40.741 2.06 0.00 0.00 2.24
351 352 7.236529 ACGGAGGTAGTACATTGATTAGGATA 58.763 38.462 2.06 0.00 0.00 2.59
352 353 6.075984 ACGGAGGTAGTACATTGATTAGGAT 58.924 40.000 2.06 0.00 0.00 3.24
353 354 5.452255 ACGGAGGTAGTACATTGATTAGGA 58.548 41.667 2.06 0.00 0.00 2.94
354 355 5.786264 ACGGAGGTAGTACATTGATTAGG 57.214 43.478 2.06 0.00 0.00 2.69
355 356 7.262772 TCAAACGGAGGTAGTACATTGATTAG 58.737 38.462 2.06 0.00 0.00 1.73
356 357 7.172868 TCAAACGGAGGTAGTACATTGATTA 57.827 36.000 2.06 0.00 0.00 1.75
357 358 6.045072 TCAAACGGAGGTAGTACATTGATT 57.955 37.500 2.06 0.00 0.00 2.57
358 359 5.670792 TCAAACGGAGGTAGTACATTGAT 57.329 39.130 2.06 0.00 0.00 2.57
359 360 5.471556 TTCAAACGGAGGTAGTACATTGA 57.528 39.130 2.06 0.00 0.00 2.57
360 361 6.737254 AATTCAAACGGAGGTAGTACATTG 57.263 37.500 2.06 0.00 0.00 2.82
361 362 7.879160 TGTAAATTCAAACGGAGGTAGTACATT 59.121 33.333 2.06 0.00 0.00 2.71
362 363 7.388437 TGTAAATTCAAACGGAGGTAGTACAT 58.612 34.615 2.06 0.00 0.00 2.29
363 364 6.757237 TGTAAATTCAAACGGAGGTAGTACA 58.243 36.000 2.06 0.00 0.00 2.90
364 365 7.148523 CCTTGTAAATTCAAACGGAGGTAGTAC 60.149 40.741 0.00 0.00 0.00 2.73
365 366 6.875195 CCTTGTAAATTCAAACGGAGGTAGTA 59.125 38.462 0.00 0.00 0.00 1.82
366 367 5.704053 CCTTGTAAATTCAAACGGAGGTAGT 59.296 40.000 0.00 0.00 0.00 2.73
367 368 5.935789 TCCTTGTAAATTCAAACGGAGGTAG 59.064 40.000 0.00 0.00 0.00 3.18
368 369 5.867330 TCCTTGTAAATTCAAACGGAGGTA 58.133 37.500 0.00 0.00 0.00 3.08
369 370 4.721132 TCCTTGTAAATTCAAACGGAGGT 58.279 39.130 0.00 0.00 0.00 3.85
370 371 5.897377 ATCCTTGTAAATTCAAACGGAGG 57.103 39.130 0.00 0.00 29.55 4.30
371 372 9.855021 AAATAATCCTTGTAAATTCAAACGGAG 57.145 29.630 0.00 0.00 29.55 4.63
372 373 9.632807 CAAATAATCCTTGTAAATTCAAACGGA 57.367 29.630 0.00 0.00 0.00 4.69
373 374 9.632807 TCAAATAATCCTTGTAAATTCAAACGG 57.367 29.630 0.00 0.00 0.00 4.44
419 420 9.616156 TGTTGATATATTTAGTCGGGCTTAAAA 57.384 29.630 0.00 0.00 0.00 1.52
420 421 9.268268 CTGTTGATATATTTAGTCGGGCTTAAA 57.732 33.333 0.00 0.00 0.00 1.52
421 422 8.644216 TCTGTTGATATATTTAGTCGGGCTTAA 58.356 33.333 0.00 0.00 0.00 1.85
422 423 8.185506 TCTGTTGATATATTTAGTCGGGCTTA 57.814 34.615 0.00 0.00 0.00 3.09
423 424 7.062749 TCTGTTGATATATTTAGTCGGGCTT 57.937 36.000 0.00 0.00 0.00 4.35
424 425 6.665992 TCTGTTGATATATTTAGTCGGGCT 57.334 37.500 0.00 0.00 0.00 5.19
425 426 7.724305 TTTCTGTTGATATATTTAGTCGGGC 57.276 36.000 0.00 0.00 0.00 6.13
438 439 9.624697 GCTGTTGATGTTAATTTTCTGTTGATA 57.375 29.630 0.00 0.00 0.00 2.15
439 440 8.362639 AGCTGTTGATGTTAATTTTCTGTTGAT 58.637 29.630 0.00 0.00 0.00 2.57
440 441 7.715657 AGCTGTTGATGTTAATTTTCTGTTGA 58.284 30.769 0.00 0.00 0.00 3.18
441 442 7.935338 AGCTGTTGATGTTAATTTTCTGTTG 57.065 32.000 0.00 0.00 0.00 3.33
442 443 8.196771 TGAAGCTGTTGATGTTAATTTTCTGTT 58.803 29.630 0.00 0.00 0.00 3.16
443 444 7.715657 TGAAGCTGTTGATGTTAATTTTCTGT 58.284 30.769 0.00 0.00 0.00 3.41
444 445 8.752766 ATGAAGCTGTTGATGTTAATTTTCTG 57.247 30.769 0.00 0.00 0.00 3.02
493 494 9.376075 CAAGATCACTAGATGTAACAATGACTT 57.624 33.333 0.00 0.00 33.72 3.01
494 495 8.753133 TCAAGATCACTAGATGTAACAATGACT 58.247 33.333 0.00 0.00 33.72 3.41
495 496 8.932945 TCAAGATCACTAGATGTAACAATGAC 57.067 34.615 0.00 0.00 33.72 3.06
504 505 9.761504 CATGAGTAAATCAAGATCACTAGATGT 57.238 33.333 0.00 0.00 42.53 3.06
505 506 9.761504 ACATGAGTAAATCAAGATCACTAGATG 57.238 33.333 0.00 0.00 42.53 2.90
510 511 9.761504 CATCTACATGAGTAAATCAAGATCACT 57.238 33.333 0.00 0.00 42.53 3.41
511 512 9.539825 ACATCTACATGAGTAAATCAAGATCAC 57.460 33.333 0.00 0.00 42.53 3.06
512 513 9.538508 CACATCTACATGAGTAAATCAAGATCA 57.461 33.333 0.00 0.00 42.53 2.92
513 514 8.986847 CCACATCTACATGAGTAAATCAAGATC 58.013 37.037 0.00 0.00 42.53 2.75
514 515 8.489489 ACCACATCTACATGAGTAAATCAAGAT 58.511 33.333 0.00 0.00 42.53 2.40
515 516 7.851228 ACCACATCTACATGAGTAAATCAAGA 58.149 34.615 0.00 0.00 42.53 3.02
516 517 8.498054 AACCACATCTACATGAGTAAATCAAG 57.502 34.615 0.00 0.00 42.53 3.02
517 518 8.862325 AAACCACATCTACATGAGTAAATCAA 57.138 30.769 0.00 0.00 42.53 2.57
518 519 8.862325 AAAACCACATCTACATGAGTAAATCA 57.138 30.769 0.00 0.00 43.70 2.57
560 561 9.850628 GTCTTAAAGTCAAACCTTTTACAGTTT 57.149 29.630 0.00 0.00 36.18 2.66
561 562 9.016438 TGTCTTAAAGTCAAACCTTTTACAGTT 57.984 29.630 0.00 0.00 36.18 3.16
562 563 8.570068 TGTCTTAAAGTCAAACCTTTTACAGT 57.430 30.769 0.00 0.00 36.18 3.55
563 564 9.285770 GTTGTCTTAAAGTCAAACCTTTTACAG 57.714 33.333 0.00 0.00 36.18 2.74
564 565 8.245491 GGTTGTCTTAAAGTCAAACCTTTTACA 58.755 33.333 0.00 0.00 36.18 2.41
565 566 7.430211 CGGTTGTCTTAAAGTCAAACCTTTTAC 59.570 37.037 0.00 0.00 36.18 2.01
566 567 7.336427 TCGGTTGTCTTAAAGTCAAACCTTTTA 59.664 33.333 0.00 0.00 36.18 1.52
567 568 6.151480 TCGGTTGTCTTAAAGTCAAACCTTTT 59.849 34.615 0.00 0.00 36.18 2.27
568 569 5.648960 TCGGTTGTCTTAAAGTCAAACCTTT 59.351 36.000 0.00 0.00 38.23 3.11
569 570 5.187687 TCGGTTGTCTTAAAGTCAAACCTT 58.812 37.500 0.00 0.00 29.15 3.50
570 571 4.773013 TCGGTTGTCTTAAAGTCAAACCT 58.227 39.130 0.00 0.00 29.15 3.50
571 572 5.488645 TTCGGTTGTCTTAAAGTCAAACC 57.511 39.130 0.00 0.00 29.15 3.27
572 573 7.190871 TCATTTCGGTTGTCTTAAAGTCAAAC 58.809 34.615 0.00 0.00 29.60 2.93
573 574 7.323049 TCATTTCGGTTGTCTTAAAGTCAAA 57.677 32.000 0.00 0.00 0.00 2.69
574 575 6.512741 GCTCATTTCGGTTGTCTTAAAGTCAA 60.513 38.462 0.00 0.00 0.00 3.18
575 576 5.049680 GCTCATTTCGGTTGTCTTAAAGTCA 60.050 40.000 0.00 0.00 0.00 3.41
576 577 5.383130 GCTCATTTCGGTTGTCTTAAAGTC 58.617 41.667 0.00 0.00 0.00 3.01
577 578 4.215613 GGCTCATTTCGGTTGTCTTAAAGT 59.784 41.667 0.00 0.00 0.00 2.66
578 579 4.455877 AGGCTCATTTCGGTTGTCTTAAAG 59.544 41.667 0.00 0.00 0.00 1.85
579 580 4.394729 AGGCTCATTTCGGTTGTCTTAAA 58.605 39.130 0.00 0.00 0.00 1.52
580 581 4.015872 AGGCTCATTTCGGTTGTCTTAA 57.984 40.909 0.00 0.00 0.00 1.85
581 582 3.695830 AGGCTCATTTCGGTTGTCTTA 57.304 42.857 0.00 0.00 0.00 2.10
582 583 2.554032 CAAGGCTCATTTCGGTTGTCTT 59.446 45.455 0.00 0.00 0.00 3.01
583 584 2.154462 CAAGGCTCATTTCGGTTGTCT 58.846 47.619 0.00 0.00 0.00 3.41
584 585 1.880027 ACAAGGCTCATTTCGGTTGTC 59.120 47.619 0.00 0.00 0.00 3.18
585 586 1.981256 ACAAGGCTCATTTCGGTTGT 58.019 45.000 0.00 0.00 0.00 3.32
586 587 4.497473 TTTACAAGGCTCATTTCGGTTG 57.503 40.909 0.00 0.00 0.00 3.77
587 588 4.555906 CGTTTTACAAGGCTCATTTCGGTT 60.556 41.667 0.00 0.00 0.00 4.44
588 589 3.058501 CGTTTTACAAGGCTCATTTCGGT 60.059 43.478 0.00 0.00 0.00 4.69
589 590 3.488489 CGTTTTACAAGGCTCATTTCGG 58.512 45.455 0.00 0.00 0.00 4.30
590 591 3.187637 TCCGTTTTACAAGGCTCATTTCG 59.812 43.478 0.00 0.00 0.00 3.46
591 592 4.379499 CCTCCGTTTTACAAGGCTCATTTC 60.379 45.833 0.00 0.00 0.00 2.17
592 593 3.506067 CCTCCGTTTTACAAGGCTCATTT 59.494 43.478 0.00 0.00 0.00 2.32
593 594 3.081804 CCTCCGTTTTACAAGGCTCATT 58.918 45.455 0.00 0.00 0.00 2.57
594 595 2.039879 ACCTCCGTTTTACAAGGCTCAT 59.960 45.455 0.00 0.00 31.79 2.90
595 596 1.418637 ACCTCCGTTTTACAAGGCTCA 59.581 47.619 0.00 0.00 31.79 4.26
596 597 2.180432 ACCTCCGTTTTACAAGGCTC 57.820 50.000 0.00 0.00 31.79 4.70
597 598 2.636403 ACTACCTCCGTTTTACAAGGCT 59.364 45.455 0.00 0.00 31.79 4.58
598 599 3.049708 ACTACCTCCGTTTTACAAGGC 57.950 47.619 0.00 0.00 31.79 4.35
599 600 4.569564 GCATACTACCTCCGTTTTACAAGG 59.430 45.833 0.00 0.00 34.94 3.61
600 601 5.416947 AGCATACTACCTCCGTTTTACAAG 58.583 41.667 0.00 0.00 0.00 3.16
601 602 5.410355 AGCATACTACCTCCGTTTTACAA 57.590 39.130 0.00 0.00 0.00 2.41
602 603 5.410355 AAGCATACTACCTCCGTTTTACA 57.590 39.130 0.00 0.00 0.00 2.41
603 604 6.732531 AAAAGCATACTACCTCCGTTTTAC 57.267 37.500 0.00 0.00 0.00 2.01
633 634 9.942850 GAAGAATGAAATCAGGGGAAATAAAAA 57.057 29.630 0.00 0.00 0.00 1.94
634 635 8.250332 CGAAGAATGAAATCAGGGGAAATAAAA 58.750 33.333 0.00 0.00 0.00 1.52
635 636 7.147915 CCGAAGAATGAAATCAGGGGAAATAAA 60.148 37.037 0.00 0.00 0.00 1.40
636 637 6.321181 CCGAAGAATGAAATCAGGGGAAATAA 59.679 38.462 0.00 0.00 0.00 1.40
637 638 5.827797 CCGAAGAATGAAATCAGGGGAAATA 59.172 40.000 0.00 0.00 0.00 1.40
638 639 4.646492 CCGAAGAATGAAATCAGGGGAAAT 59.354 41.667 0.00 0.00 0.00 2.17
639 640 4.016444 CCGAAGAATGAAATCAGGGGAAA 58.984 43.478 0.00 0.00 0.00 3.13
640 641 3.010138 ACCGAAGAATGAAATCAGGGGAA 59.990 43.478 0.00 0.00 0.00 3.97
641 642 2.576191 ACCGAAGAATGAAATCAGGGGA 59.424 45.455 0.00 0.00 0.00 4.81
642 643 2.684881 CACCGAAGAATGAAATCAGGGG 59.315 50.000 0.00 0.00 0.00 4.79
643 644 2.098117 GCACCGAAGAATGAAATCAGGG 59.902 50.000 0.00 0.00 0.00 4.45
644 645 2.749076 TGCACCGAAGAATGAAATCAGG 59.251 45.455 0.00 0.00 0.00 3.86
645 646 3.181503 CCTGCACCGAAGAATGAAATCAG 60.182 47.826 0.00 0.00 0.00 2.90
649 650 0.881118 GCCTGCACCGAAGAATGAAA 59.119 50.000 0.00 0.00 0.00 2.69
695 696 2.639065 GGGAGGTTGTTTGCGATGATA 58.361 47.619 0.00 0.00 0.00 2.15
897 898 3.358707 GCTTTACGTTGGCCCGCA 61.359 61.111 0.00 0.00 0.00 5.69
898 899 4.111016 GGCTTTACGTTGGCCCGC 62.111 66.667 0.00 0.00 39.96 6.13
1038 1052 2.359850 GACACCTTGATGCCGCCA 60.360 61.111 0.00 0.00 0.00 5.69
1072 1086 0.180406 AAGGAGTTGGTGAGCACGTT 59.820 50.000 0.00 0.00 0.00 3.99
1164 1178 4.829140 GTACACGTTGGCGAGTAGCTGT 62.829 54.545 0.00 0.00 42.80 4.40
1166 1180 0.109412 GTACACGTTGGCGAGTAGCT 60.109 55.000 0.00 0.00 42.80 3.32
1170 1184 2.341176 GGGTACACGTTGGCGAGT 59.659 61.111 0.00 0.00 43.70 4.18
1292 1306 0.392193 CATGGCGCTGAAGAGGTTCT 60.392 55.000 7.64 0.00 33.38 3.01
1354 1368 1.533273 ACACTACCACCCTCACGCT 60.533 57.895 0.00 0.00 0.00 5.07
1368 1382 3.374402 CACCCGCTCTCCGACACT 61.374 66.667 0.00 0.00 40.02 3.55
1518 1532 2.269241 CCGGGCTTCTGGTTCTCC 59.731 66.667 0.00 0.00 32.23 3.71
1538 1552 2.224378 CCAAAGTGCCTCTCAGTCTCAA 60.224 50.000 0.00 0.00 0.00 3.02
1545 1559 1.130054 AGAGCCCAAAGTGCCTCTCA 61.130 55.000 0.00 0.00 0.00 3.27
1569 1583 2.124236 ACCCGCGTTTTGTTGGGA 60.124 55.556 4.92 0.00 44.88 4.37
1604 1618 0.668535 GGCCGCAACCAATATTCCTC 59.331 55.000 0.00 0.00 0.00 3.71
1632 1649 0.542702 CACCAAGCCCATGGGAGTTT 60.543 55.000 36.00 20.94 45.18 2.66
1638 1655 1.978617 GTGTCCACCAAGCCCATGG 60.979 63.158 4.14 4.14 46.38 3.66
1645 1662 3.511540 TCATCAGTCTAGTGTCCACCAAG 59.488 47.826 0.00 0.00 0.00 3.61
1713 1748 8.368668 TGCCATTATGCATGATTGATTTGATAA 58.631 29.630 10.16 0.00 36.04 1.75
1745 1780 2.001838 GAGGAGGGGAAGGGGTTCC 61.002 68.421 0.00 0.00 40.38 3.62
1746 1781 2.368011 CGAGGAGGGGAAGGGGTTC 61.368 68.421 0.00 0.00 0.00 3.62
1747 1782 2.285442 CGAGGAGGGGAAGGGGTT 60.285 66.667 0.00 0.00 0.00 4.11
1748 1783 4.416601 CCGAGGAGGGGAAGGGGT 62.417 72.222 0.00 0.00 35.97 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.