Multiple sequence alignment - TraesCS3A01G483200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G483200 chr3A 100.000 4942 0 0 1 4942 713634028 713629087 0.000000e+00 9127.0
1 TraesCS3A01G483200 chr3A 88.512 383 34 9 3149 3524 713556591 713556212 5.830000e-124 455.0
2 TraesCS3A01G483200 chr3A 82.667 450 48 3 2555 2975 713556987 713556539 6.040000e-99 372.0
3 TraesCS3A01G483200 chr3A 81.461 356 55 9 3603 3949 713556088 713555735 1.050000e-71 281.0
4 TraesCS3A01G483200 chr3A 74.925 335 53 13 2590 2896 713836190 713835859 1.870000e-24 124.0
5 TraesCS3A01G483200 chr3D 94.528 2248 91 17 900 3145 578066642 578064425 0.000000e+00 3441.0
6 TraesCS3A01G483200 chr3D 88.263 1704 123 29 3253 4940 577885525 577887167 0.000000e+00 1967.0
7 TraesCS3A01G483200 chr3D 97.645 1104 25 1 861 1963 577881610 577882713 0.000000e+00 1893.0
8 TraesCS3A01G483200 chr3D 88.244 1327 128 13 3149 4461 578064621 578063309 0.000000e+00 1561.0
9 TraesCS3A01G483200 chr3D 93.118 712 45 4 1961 2671 577884404 577885112 0.000000e+00 1040.0
10 TraesCS3A01G483200 chr3D 88.462 676 68 7 907 1581 577870695 577871361 0.000000e+00 808.0
11 TraesCS3A01G483200 chr3D 97.159 352 9 1 1 351 577880970 577881321 1.180000e-165 593.0
12 TraesCS3A01G483200 chr3D 88.017 459 55 0 1460 1918 577828419 577827961 1.210000e-150 544.0
13 TraesCS3A01G483200 chr3D 95.513 312 14 0 2661 2972 577885186 577885497 2.660000e-137 499.0
14 TraesCS3A01G483200 chr3D 96.233 292 10 1 581 871 577881294 577881585 1.240000e-130 477.0
15 TraesCS3A01G483200 chr3D 82.322 577 56 17 2442 2975 577827895 577827322 4.510000e-125 459.0
16 TraesCS3A01G483200 chr3D 85.204 392 36 15 3152 3524 577827371 577826983 2.790000e-102 383.0
17 TraesCS3A01G483200 chr3D 76.812 759 110 32 3603 4337 577826861 577826145 2.810000e-97 366.0
18 TraesCS3A01G483200 chr3D 81.062 433 56 14 2563 2972 577904389 577904818 6.170000e-84 322.0
19 TraesCS3A01G483200 chr3D 82.682 358 62 0 3603 3960 578158033 578157676 7.980000e-83 318.0
20 TraesCS3A01G483200 chr3D 75.422 415 92 10 1519 1928 577861092 577861501 5.050000e-45 193.0
21 TraesCS3A01G483200 chr3D 75.060 417 97 7 1522 1934 578106814 578106401 2.350000e-43 187.0
22 TraesCS3A01G483200 chr3D 89.313 131 13 1 699 828 577870354 577870484 3.960000e-36 163.0
23 TraesCS3A01G483200 chr3D 89.313 131 7 4 4542 4668 578063216 578063089 1.840000e-34 158.0
24 TraesCS3A01G483200 chr3D 76.106 339 52 12 2585 2896 578213026 578212690 3.080000e-32 150.0
25 TraesCS3A01G483200 chr3D 93.478 92 6 0 3054 3145 577885525 577885616 2.400000e-28 137.0
26 TraesCS3A01G483200 chr3D 80.142 141 28 0 1756 1896 578144466 578144326 6.770000e-19 106.0
27 TraesCS3A01G483200 chr3B 94.300 2263 94 6 872 3131 771326761 771324531 0.000000e+00 3432.0
28 TraesCS3A01G483200 chr3B 87.215 1142 98 22 3149 4282 771324712 771323611 0.000000e+00 1256.0
29 TraesCS3A01G483200 chr3B 88.462 546 54 5 907 1447 771344838 771344297 0.000000e+00 651.0
30 TraesCS3A01G483200 chr3B 86.264 364 39 8 3171 3524 771127121 771127483 7.760000e-103 385.0
31 TraesCS3A01G483200 chr3B 88.379 327 29 8 67 388 771327897 771327575 7.760000e-103 385.0
32 TraesCS3A01G483200 chr3B 81.579 418 47 3 2587 2975 770988427 770988011 7.980000e-83 318.0
33 TraesCS3A01G483200 chr3B 81.322 348 61 4 3603 3949 771127613 771127957 3.770000e-71 279.0
34 TraesCS3A01G483200 chr3B 85.417 192 25 1 1747 1935 771390085 771389894 3.900000e-46 196.0
35 TraesCS3A01G483200 chr3B 93.204 103 5 2 558 658 771327573 771327471 3.080000e-32 150.0
36 TraesCS3A01G483200 chr3B 88.235 119 9 5 4542 4658 771323283 771323168 2.400000e-28 137.0
37 TraesCS3A01G483200 chr3B 90.000 100 10 0 3149 3248 771007525 771007426 4.010000e-26 130.0
38 TraesCS3A01G483200 chr3B 89.320 103 8 2 1485 1587 771344295 771344196 5.190000e-25 126.0
39 TraesCS3A01G483200 chr3B 80.723 166 29 2 2571 2734 771514328 771514164 5.190000e-25 126.0
40 TraesCS3A01G483200 chr3B 77.720 193 39 2 1756 1944 771402003 771401811 1.120000e-21 115.0
41 TraesCS3A01G483200 chr3B 83.051 118 17 3 207 323 771345166 771345051 2.430000e-18 104.0
42 TraesCS3A01G483200 chr7D 79.387 359 60 12 3603 3960 593647435 593647780 1.780000e-59 241.0
43 TraesCS3A01G483200 chr7D 86.243 189 24 2 3342 3529 593647138 593647325 2.330000e-48 204.0
44 TraesCS3A01G483200 chr5A 93.252 163 11 0 391 553 706667781 706667943 1.780000e-59 241.0
45 TraesCS3A01G483200 chr6A 91.765 170 14 0 386 555 583002612 583002781 2.300000e-58 237.0
46 TraesCS3A01G483200 chr4A 93.168 161 8 3 395 553 18660386 18660545 2.970000e-57 233.0
47 TraesCS3A01G483200 chrUn 91.566 166 12 2 391 554 360088981 360089146 1.380000e-55 228.0
48 TraesCS3A01G483200 chrUn 91.566 166 12 2 391 554 416058033 416058198 1.380000e-55 228.0
49 TraesCS3A01G483200 chr7A 92.025 163 12 1 394 555 672652159 672651997 1.380000e-55 228.0
50 TraesCS3A01G483200 chr7A 91.411 163 13 1 392 553 65522750 65522912 6.440000e-54 222.0
51 TraesCS3A01G483200 chr7A 81.507 146 23 3 4701 4845 639414705 639414847 3.130000e-22 117.0
52 TraesCS3A01G483200 chr7A 77.714 175 25 14 4683 4850 35958854 35959021 1.460000e-15 95.3
53 TraesCS3A01G483200 chr5B 90.173 173 17 0 384 556 686710397 686710569 4.980000e-55 226.0
54 TraesCS3A01G483200 chr5B 89.595 173 18 0 384 556 686830746 686830918 2.320000e-53 220.0
55 TraesCS3A01G483200 chr7B 84.753 223 30 4 3712 3932 667374470 667374250 2.320000e-53 220.0
56 TraesCS3A01G483200 chr2B 81.283 187 28 5 4661 4846 198947188 198947008 1.430000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G483200 chr3A 713629087 713634028 4941 True 9127.000000 9127 100.000000 1 4942 1 chr3A.!!$R1 4941
1 TraesCS3A01G483200 chr3A 713555735 713556987 1252 True 369.333333 455 84.213333 2555 3949 3 chr3A.!!$R3 1394
2 TraesCS3A01G483200 chr3D 578063089 578066642 3553 True 1720.000000 3441 90.695000 900 4668 3 chr3D.!!$R6 3768
3 TraesCS3A01G483200 chr3D 577880970 577887167 6197 False 943.714286 1967 94.487000 1 4940 7 chr3D.!!$F4 4939
4 TraesCS3A01G483200 chr3D 577870354 577871361 1007 False 485.500000 808 88.887500 699 1581 2 chr3D.!!$F3 882
5 TraesCS3A01G483200 chr3D 577826145 577828419 2274 True 438.000000 544 83.088750 1460 4337 4 chr3D.!!$R5 2877
6 TraesCS3A01G483200 chr3B 771323168 771327897 4729 True 1072.000000 3432 90.266600 67 4658 5 chr3B.!!$R6 4591
7 TraesCS3A01G483200 chr3B 771127121 771127957 836 False 332.000000 385 83.793000 3171 3949 2 chr3B.!!$F1 778
8 TraesCS3A01G483200 chr3B 771344196 771345166 970 True 293.666667 651 86.944333 207 1587 3 chr3B.!!$R7 1380
9 TraesCS3A01G483200 chr7D 593647138 593647780 642 False 222.500000 241 82.815000 3342 3960 2 chr7D.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 568 0.109342 CGGGCCTCCAAATCAGCTAT 59.891 55.000 0.84 0.0 0.00 2.97 F
464 585 0.249996 TATAACGGGCTAAAGCGGGC 60.250 55.000 0.00 0.0 43.26 6.13 F
502 623 0.476338 TTTAGTGGCACCCTGCTGAA 59.524 50.000 15.27 0.0 44.28 3.02 F
503 624 0.476338 TTAGTGGCACCCTGCTGAAA 59.524 50.000 15.27 0.0 44.28 2.69 F
504 625 0.476338 TAGTGGCACCCTGCTGAAAA 59.524 50.000 15.27 0.0 44.28 2.29 F
509 630 0.609131 GCACCCTGCTGAAAAGGCTA 60.609 55.000 0.00 0.0 40.96 3.93 F
2966 5466 1.005394 ACGTCCTTAACAGCCCGTG 60.005 57.895 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 4594 0.820226 CTCAGGTTCGGATCTCAGCA 59.180 55.000 0.00 0.0 0.00 4.41 R
2376 4744 7.443879 ACCTTAAAACCATCAAAATTTGCGAAT 59.556 29.630 0.00 0.0 0.00 3.34 R
2514 4883 9.722056 CTTCAACTGATAAGGCAACAATAATAC 57.278 33.333 0.00 0.0 41.41 1.89 R
2896 5396 1.021390 GTGTCATCCCTGCTGTTCCG 61.021 60.000 0.00 0.0 0.00 4.30 R
2971 5471 1.001633 TGGGCTGTTAAGGACGTCTTC 59.998 52.381 16.46 0.0 36.93 2.87 R
2975 5475 0.690762 ACATGGGCTGTTAAGGACGT 59.309 50.000 0.00 0.0 32.90 4.34 R
4384 7017 0.470766 TTGGAACGGTGGCTTGTACT 59.529 50.000 0.00 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 5.530543 TGAGCACACTGTTCATATTTGTTCA 59.469 36.000 0.00 0.00 32.63 3.18
143 144 6.883756 TCATATTTGTTCATCTTGTACAGCCA 59.116 34.615 0.00 0.00 29.59 4.75
148 149 2.540383 TCATCTTGTACAGCCAGGAGT 58.460 47.619 0.00 0.00 0.00 3.85
346 467 5.016051 TGCCTGAAACATTTAAGTTTGCA 57.984 34.783 0.00 0.00 41.48 4.08
347 468 5.609423 TGCCTGAAACATTTAAGTTTGCAT 58.391 33.333 0.00 0.00 41.48 3.96
348 469 6.753180 TGCCTGAAACATTTAAGTTTGCATA 58.247 32.000 0.00 0.00 41.48 3.14
349 470 7.385267 TGCCTGAAACATTTAAGTTTGCATAT 58.615 30.769 0.00 0.00 41.48 1.78
350 471 8.526978 TGCCTGAAACATTTAAGTTTGCATATA 58.473 29.630 0.00 0.00 41.48 0.86
351 472 8.807581 GCCTGAAACATTTAAGTTTGCATATAC 58.192 33.333 0.00 0.00 41.48 1.47
394 515 6.638096 CACCAAATGCATGTATCCTAATCA 57.362 37.500 0.00 0.00 0.00 2.57
395 516 7.041635 CACCAAATGCATGTATCCTAATCAA 57.958 36.000 0.00 0.00 0.00 2.57
396 517 7.663827 CACCAAATGCATGTATCCTAATCAAT 58.336 34.615 0.00 0.00 0.00 2.57
397 518 7.597369 CACCAAATGCATGTATCCTAATCAATG 59.403 37.037 0.00 0.00 0.00 2.82
398 519 7.288389 ACCAAATGCATGTATCCTAATCAATGT 59.712 33.333 0.00 0.00 0.00 2.71
399 520 8.145767 CCAAATGCATGTATCCTAATCAATGTT 58.854 33.333 0.00 0.00 0.00 2.71
400 521 9.537192 CAAATGCATGTATCCTAATCAATGTTT 57.463 29.630 0.00 0.00 0.00 2.83
411 532 7.936584 TCCTAATCAATGTTTTAAATAGCGGG 58.063 34.615 0.00 0.00 0.00 6.13
412 533 6.640907 CCTAATCAATGTTTTAAATAGCGGGC 59.359 38.462 0.00 0.00 0.00 6.13
413 534 5.852282 ATCAATGTTTTAAATAGCGGGCT 57.148 34.783 0.00 0.00 0.00 5.19
414 535 6.952773 ATCAATGTTTTAAATAGCGGGCTA 57.047 33.333 2.42 2.42 0.00 3.93
415 536 6.952773 TCAATGTTTTAAATAGCGGGCTAT 57.047 33.333 7.36 7.36 40.63 2.97
416 537 6.734137 TCAATGTTTTAAATAGCGGGCTATG 58.266 36.000 13.53 0.00 39.03 2.23
417 538 5.705609 ATGTTTTAAATAGCGGGCTATGG 57.294 39.130 13.53 0.00 39.03 2.74
418 539 4.783055 TGTTTTAAATAGCGGGCTATGGA 58.217 39.130 13.53 2.82 39.03 3.41
419 540 5.194432 TGTTTTAAATAGCGGGCTATGGAA 58.806 37.500 13.53 8.30 39.03 3.53
420 541 5.652891 TGTTTTAAATAGCGGGCTATGGAAA 59.347 36.000 13.53 12.97 39.03 3.13
421 542 6.153000 TGTTTTAAATAGCGGGCTATGGAAAA 59.847 34.615 13.53 17.02 39.03 2.29
422 543 6.969993 TTTAAATAGCGGGCTATGGAAAAT 57.030 33.333 13.53 0.00 39.03 1.82
423 544 8.354426 GTTTTAAATAGCGGGCTATGGAAAATA 58.646 33.333 22.50 9.79 39.03 1.40
424 545 7.681939 TTAAATAGCGGGCTATGGAAAATAG 57.318 36.000 13.53 0.00 39.03 1.73
425 546 1.897560 AGCGGGCTATGGAAAATAGC 58.102 50.000 8.52 8.52 44.56 2.97
426 547 0.517316 GCGGGCTATGGAAAATAGCG 59.483 55.000 10.37 0.97 45.83 4.26
427 548 1.156736 CGGGCTATGGAAAATAGCGG 58.843 55.000 10.37 2.96 45.83 5.52
428 549 0.881796 GGGCTATGGAAAATAGCGGC 59.118 55.000 10.37 0.00 45.83 6.53
429 550 0.517316 GGCTATGGAAAATAGCGGCG 59.483 55.000 0.51 0.51 45.83 6.46
430 551 0.517316 GCTATGGAAAATAGCGGCGG 59.483 55.000 9.78 0.00 37.79 6.13
431 552 1.156736 CTATGGAAAATAGCGGCGGG 58.843 55.000 9.78 0.00 0.00 6.13
432 553 0.887387 TATGGAAAATAGCGGCGGGC 60.887 55.000 9.78 0.00 44.05 6.13
433 554 3.592814 GGAAAATAGCGGCGGGCC 61.593 66.667 9.78 0.00 45.17 5.80
434 555 2.516225 GAAAATAGCGGCGGGCCT 60.516 61.111 9.78 0.00 45.17 5.19
435 556 2.516225 AAAATAGCGGCGGGCCTC 60.516 61.111 9.78 0.00 45.17 4.70
436 557 4.564110 AAATAGCGGCGGGCCTCC 62.564 66.667 9.78 1.28 45.17 4.30
442 563 4.794648 CGGCGGGCCTCCAAATCA 62.795 66.667 13.99 0.00 0.00 2.57
443 564 2.830370 GGCGGGCCTCCAAATCAG 60.830 66.667 7.92 0.00 0.00 2.90
444 565 3.521796 GCGGGCCTCCAAATCAGC 61.522 66.667 0.84 0.00 0.00 4.26
445 566 2.273449 CGGGCCTCCAAATCAGCT 59.727 61.111 0.84 0.00 0.00 4.24
446 567 1.526887 CGGGCCTCCAAATCAGCTA 59.473 57.895 0.84 0.00 0.00 3.32
447 568 0.109342 CGGGCCTCCAAATCAGCTAT 59.891 55.000 0.84 0.00 0.00 2.97
448 569 1.347707 CGGGCCTCCAAATCAGCTATA 59.652 52.381 0.84 0.00 0.00 1.31
449 570 2.224523 CGGGCCTCCAAATCAGCTATAA 60.225 50.000 0.84 0.00 0.00 0.98
450 571 3.149981 GGGCCTCCAAATCAGCTATAAC 58.850 50.000 0.84 0.00 0.00 1.89
451 572 2.808543 GGCCTCCAAATCAGCTATAACG 59.191 50.000 0.00 0.00 0.00 3.18
452 573 2.808543 GCCTCCAAATCAGCTATAACGG 59.191 50.000 0.00 0.00 0.00 4.44
453 574 3.403038 CCTCCAAATCAGCTATAACGGG 58.597 50.000 0.00 0.00 0.00 5.28
454 575 2.808543 CTCCAAATCAGCTATAACGGGC 59.191 50.000 0.00 0.00 0.00 6.13
455 576 2.438021 TCCAAATCAGCTATAACGGGCT 59.562 45.455 0.00 0.00 39.60 5.19
456 577 3.644265 TCCAAATCAGCTATAACGGGCTA 59.356 43.478 0.00 0.00 37.00 3.93
457 578 4.101898 TCCAAATCAGCTATAACGGGCTAA 59.898 41.667 0.00 0.00 37.00 3.09
458 579 4.819630 CCAAATCAGCTATAACGGGCTAAA 59.180 41.667 0.00 0.00 37.00 1.85
459 580 5.049405 CCAAATCAGCTATAACGGGCTAAAG 60.049 44.000 0.00 0.00 37.00 1.85
460 581 3.107642 TCAGCTATAACGGGCTAAAGC 57.892 47.619 0.00 0.00 37.00 3.51
461 582 1.792949 CAGCTATAACGGGCTAAAGCG 59.207 52.381 0.00 0.00 43.26 4.68
462 583 1.145803 GCTATAACGGGCTAAAGCGG 58.854 55.000 0.00 0.00 43.26 5.52
463 584 1.792006 CTATAACGGGCTAAAGCGGG 58.208 55.000 0.00 0.00 43.26 6.13
464 585 0.249996 TATAACGGGCTAAAGCGGGC 60.250 55.000 0.00 0.00 43.26 6.13
465 586 1.979619 ATAACGGGCTAAAGCGGGCT 61.980 55.000 0.00 0.00 43.26 5.19
466 587 1.329171 TAACGGGCTAAAGCGGGCTA 61.329 55.000 0.00 0.00 43.26 3.93
467 588 1.979619 AACGGGCTAAAGCGGGCTAT 61.980 55.000 0.00 0.00 43.26 2.97
468 589 1.227853 CGGGCTAAAGCGGGCTATT 60.228 57.895 0.00 0.00 43.26 1.73
469 590 0.818040 CGGGCTAAAGCGGGCTATTT 60.818 55.000 0.00 0.00 43.26 1.40
470 591 1.541670 CGGGCTAAAGCGGGCTATTTA 60.542 52.381 0.00 0.00 43.26 1.40
471 592 2.791655 GGGCTAAAGCGGGCTATTTAT 58.208 47.619 0.00 0.00 43.26 1.40
472 593 2.488153 GGGCTAAAGCGGGCTATTTATG 59.512 50.000 0.00 0.00 43.26 1.90
473 594 3.408634 GGCTAAAGCGGGCTATTTATGA 58.591 45.455 0.00 0.00 43.26 2.15
474 595 3.818773 GGCTAAAGCGGGCTATTTATGAA 59.181 43.478 0.00 0.00 43.26 2.57
475 596 4.083271 GGCTAAAGCGGGCTATTTATGAAG 60.083 45.833 0.00 0.00 43.26 3.02
476 597 4.083271 GCTAAAGCGGGCTATTTATGAAGG 60.083 45.833 0.00 0.00 0.00 3.46
477 598 1.897560 AGCGGGCTATTTATGAAGGC 58.102 50.000 0.00 0.00 37.55 4.35
478 599 1.142870 AGCGGGCTATTTATGAAGGCA 59.857 47.619 0.00 0.00 39.91 4.75
479 600 1.537202 GCGGGCTATTTATGAAGGCAG 59.463 52.381 0.00 0.00 39.91 4.85
480 601 2.851195 CGGGCTATTTATGAAGGCAGT 58.149 47.619 0.00 0.00 39.91 4.40
481 602 2.808543 CGGGCTATTTATGAAGGCAGTC 59.191 50.000 0.00 0.00 39.91 3.51
482 603 3.744214 CGGGCTATTTATGAAGGCAGTCA 60.744 47.826 0.00 0.00 39.91 3.41
483 604 4.401925 GGGCTATTTATGAAGGCAGTCAT 58.598 43.478 8.50 8.50 41.21 3.06
484 605 4.829492 GGGCTATTTATGAAGGCAGTCATT 59.171 41.667 8.72 0.00 39.07 2.57
485 606 5.302823 GGGCTATTTATGAAGGCAGTCATTT 59.697 40.000 8.72 0.00 39.07 2.32
486 607 6.490040 GGGCTATTTATGAAGGCAGTCATTTA 59.510 38.462 8.72 0.00 39.07 1.40
487 608 7.308830 GGGCTATTTATGAAGGCAGTCATTTAG 60.309 40.741 8.72 8.93 39.07 1.85
488 609 7.229506 GGCTATTTATGAAGGCAGTCATTTAGT 59.770 37.037 8.72 0.00 39.07 2.24
489 610 8.072567 GCTATTTATGAAGGCAGTCATTTAGTG 58.927 37.037 8.72 0.96 39.07 2.74
490 611 6.757897 TTTATGAAGGCAGTCATTTAGTGG 57.242 37.500 8.72 0.00 39.07 4.00
495 616 0.811281 GCAGTCATTTAGTGGCACCC 59.189 55.000 15.27 0.00 33.88 4.61
496 617 1.614317 GCAGTCATTTAGTGGCACCCT 60.614 52.381 15.27 0.00 33.88 4.34
497 618 2.086869 CAGTCATTTAGTGGCACCCTG 58.913 52.381 15.27 6.99 33.88 4.45
498 619 0.811281 GTCATTTAGTGGCACCCTGC 59.189 55.000 15.27 0.51 44.08 4.85
499 620 0.698238 TCATTTAGTGGCACCCTGCT 59.302 50.000 15.27 0.00 44.28 4.24
500 621 0.813184 CATTTAGTGGCACCCTGCTG 59.187 55.000 15.27 2.24 44.28 4.41
501 622 0.698238 ATTTAGTGGCACCCTGCTGA 59.302 50.000 15.27 0.00 44.28 4.26
502 623 0.476338 TTTAGTGGCACCCTGCTGAA 59.524 50.000 15.27 0.00 44.28 3.02
503 624 0.476338 TTAGTGGCACCCTGCTGAAA 59.524 50.000 15.27 0.00 44.28 2.69
504 625 0.476338 TAGTGGCACCCTGCTGAAAA 59.524 50.000 15.27 0.00 44.28 2.29
505 626 0.825010 AGTGGCACCCTGCTGAAAAG 60.825 55.000 15.27 0.00 44.28 2.27
506 627 1.531365 TGGCACCCTGCTGAAAAGG 60.531 57.895 0.00 0.00 44.28 3.11
507 628 2.653115 GCACCCTGCTGAAAAGGC 59.347 61.111 0.00 0.00 40.96 4.35
508 629 1.905354 GCACCCTGCTGAAAAGGCT 60.905 57.895 0.00 0.00 40.96 4.58
509 630 0.609131 GCACCCTGCTGAAAAGGCTA 60.609 55.000 0.00 0.00 40.96 3.93
510 631 1.957113 GCACCCTGCTGAAAAGGCTAT 60.957 52.381 0.00 0.00 40.96 2.97
511 632 2.683742 GCACCCTGCTGAAAAGGCTATA 60.684 50.000 0.00 0.00 40.96 1.31
512 633 3.209410 CACCCTGCTGAAAAGGCTATAG 58.791 50.000 0.00 0.00 33.07 1.31
513 634 2.225467 CCCTGCTGAAAAGGCTATAGC 58.775 52.381 16.78 16.78 41.14 2.97
514 635 1.869767 CCTGCTGAAAAGGCTATAGCG 59.130 52.381 18.30 4.04 43.26 4.26
515 636 1.869767 CTGCTGAAAAGGCTATAGCGG 59.130 52.381 18.30 6.64 43.26 5.52
516 637 1.230324 GCTGAAAAGGCTATAGCGGG 58.770 55.000 18.30 4.63 43.26 6.13
517 638 1.475213 GCTGAAAAGGCTATAGCGGGT 60.475 52.381 18.30 2.92 43.26 5.28
518 639 2.919228 CTGAAAAGGCTATAGCGGGTT 58.081 47.619 18.30 11.25 43.26 4.11
519 640 3.743269 GCTGAAAAGGCTATAGCGGGTTA 60.743 47.826 18.30 2.81 43.26 2.85
520 641 4.642429 CTGAAAAGGCTATAGCGGGTTAT 58.358 43.478 18.30 2.63 43.26 1.89
521 642 5.790593 CTGAAAAGGCTATAGCGGGTTATA 58.209 41.667 18.30 1.89 43.26 0.98
522 643 5.790593 TGAAAAGGCTATAGCGGGTTATAG 58.209 41.667 18.30 5.50 43.26 1.31
526 647 3.498927 GCTATAGCGGGTTATAGCGAA 57.501 47.619 9.40 0.00 44.89 4.70
527 648 3.436496 GCTATAGCGGGTTATAGCGAAG 58.564 50.000 9.40 0.00 44.89 3.79
542 663 2.656560 CGAAGCTATAGCCGGCTATT 57.343 50.000 44.65 31.63 43.38 1.73
543 664 2.960819 CGAAGCTATAGCCGGCTATTT 58.039 47.619 44.65 34.49 43.38 1.40
544 665 4.106029 CGAAGCTATAGCCGGCTATTTA 57.894 45.455 44.65 30.51 43.38 1.40
545 666 4.491676 CGAAGCTATAGCCGGCTATTTAA 58.508 43.478 44.65 29.85 43.38 1.52
546 667 4.927425 CGAAGCTATAGCCGGCTATTTAAA 59.073 41.667 44.65 29.52 43.38 1.52
547 668 5.407387 CGAAGCTATAGCCGGCTATTTAAAA 59.593 40.000 44.65 29.19 43.38 1.52
548 669 6.555812 AAGCTATAGCCGGCTATTTAAAAC 57.444 37.500 44.65 28.54 43.38 2.43
549 670 5.866207 AGCTATAGCCGGCTATTTAAAACT 58.134 37.500 44.65 29.88 43.38 2.66
550 671 7.001099 AGCTATAGCCGGCTATTTAAAACTA 57.999 36.000 44.65 27.23 43.38 2.24
551 672 7.621796 AGCTATAGCCGGCTATTTAAAACTAT 58.378 34.615 44.65 26.21 43.38 2.12
552 673 7.549488 AGCTATAGCCGGCTATTTAAAACTATG 59.451 37.037 44.65 24.19 43.38 2.23
553 674 7.548075 GCTATAGCCGGCTATTTAAAACTATGA 59.452 37.037 44.65 25.48 39.65 2.15
554 675 9.601217 CTATAGCCGGCTATTTAAAACTATGAT 57.399 33.333 44.65 25.13 39.65 2.45
555 676 6.803154 AGCCGGCTATTTAAAACTATGATC 57.197 37.500 31.86 0.00 0.00 2.92
556 677 5.705905 AGCCGGCTATTTAAAACTATGATCC 59.294 40.000 31.86 0.00 0.00 3.36
557 678 5.705905 GCCGGCTATTTAAAACTATGATCCT 59.294 40.000 22.15 0.00 0.00 3.24
558 679 6.348540 GCCGGCTATTTAAAACTATGATCCTG 60.349 42.308 22.15 0.00 0.00 3.86
559 680 6.934645 CCGGCTATTTAAAACTATGATCCTGA 59.065 38.462 0.00 0.00 0.00 3.86
560 681 7.607991 CCGGCTATTTAAAACTATGATCCTGAT 59.392 37.037 0.00 0.00 0.00 2.90
561 682 9.003658 CGGCTATTTAAAACTATGATCCTGATT 57.996 33.333 0.00 0.00 0.00 2.57
590 711 9.170734 TGAATCATATATAAAGATGCCTGAAGC 57.829 33.333 2.79 0.00 44.14 3.86
601 722 1.706443 GCCTGAAGCATCAACTTTGC 58.294 50.000 0.00 0.00 42.97 3.68
662 783 5.401972 GCATTTGCATATGCGCATAACTTTA 59.598 36.000 32.02 18.20 45.83 1.85
674 795 5.447818 GCGCATAACTTTAACTTGCAGATCT 60.448 40.000 0.30 0.00 32.94 2.75
734 1229 7.764331 ACATTTAGTCCAAGTACAAAACGTTT 58.236 30.769 7.96 7.96 0.00 3.60
824 1327 6.071616 GCTCATACCCCAAATTTGAGTAACAA 60.072 38.462 19.86 9.13 36.91 2.83
1545 2219 4.523558 GGTACTACTCAGTCTTCACCAAGT 59.476 45.833 0.00 0.00 36.14 3.16
1684 2358 5.339695 GGGATTATTCAGTTACCTCCACCAA 60.340 44.000 0.00 0.00 0.00 3.67
1974 4341 4.770531 TGCTTACCTTCTGTAGCTACTCAA 59.229 41.667 23.84 14.84 0.00 3.02
2079 4446 8.770828 TCTTTTCTAAATACGTTTGAACCTCTG 58.229 33.333 0.00 0.00 0.00 3.35
2134 4501 7.346175 TGGTAGGCAATTGTTCTAATACCTCTA 59.654 37.037 7.40 0.00 33.99 2.43
2186 4554 6.089954 GCATTGTTTTGTCTTCTTATTCAGCC 59.910 38.462 0.00 0.00 0.00 4.85
2191 4559 9.077885 TGTTTTGTCTTCTTATTCAGCCTTATT 57.922 29.630 0.00 0.00 0.00 1.40
2285 4653 3.700539 TGGAAAGCACCATTGGATGTATG 59.299 43.478 10.37 0.00 34.77 2.39
2407 4775 9.108284 CAAATTTTGATGGTTTTAAGGTTGAGT 57.892 29.630 2.88 0.00 0.00 3.41
2479 4848 3.853355 ACAAGCCTCTGAAGGATATGG 57.147 47.619 0.00 0.00 41.63 2.74
2492 4861 8.632679 TCTGAAGGATATGGTTGCAATAAAATC 58.367 33.333 0.59 4.45 0.00 2.17
2622 5012 8.221251 TCAACAGTATCACCATCTACTCTATCT 58.779 37.037 0.00 0.00 0.00 1.98
2623 5013 8.855110 CAACAGTATCACCATCTACTCTATCTT 58.145 37.037 0.00 0.00 0.00 2.40
2896 5396 2.741211 GTTCGTCGTTCCCCTGGC 60.741 66.667 0.00 0.00 0.00 4.85
2965 5465 1.183676 AGACGTCCTTAACAGCCCGT 61.184 55.000 13.01 0.00 0.00 5.28
2966 5466 1.005394 ACGTCCTTAACAGCCCGTG 60.005 57.895 0.00 0.00 0.00 4.94
2967 5467 1.005394 CGTCCTTAACAGCCCGTGT 60.005 57.895 0.00 0.00 43.24 4.49
2976 5476 2.165319 ACAGCCCGTGTTAAGAAGAC 57.835 50.000 0.00 0.00 34.94 3.01
2977 5477 1.068474 CAGCCCGTGTTAAGAAGACG 58.932 55.000 2.21 2.21 46.39 4.18
2978 5478 0.677842 AGCCCGTGTTAAGAAGACGT 59.322 50.000 7.91 0.00 45.51 4.34
2979 5479 1.066136 GCCCGTGTTAAGAAGACGTC 58.934 55.000 7.70 7.70 45.51 4.34
2980 5480 1.706443 CCCGTGTTAAGAAGACGTCC 58.294 55.000 13.01 0.00 45.51 4.79
2981 5481 1.271656 CCCGTGTTAAGAAGACGTCCT 59.728 52.381 13.01 0.00 45.51 3.85
2982 5482 2.288640 CCCGTGTTAAGAAGACGTCCTT 60.289 50.000 13.01 11.88 45.51 3.36
2983 5483 3.057315 CCCGTGTTAAGAAGACGTCCTTA 60.057 47.826 13.01 10.84 45.51 2.69
2984 5484 4.549458 CCGTGTTAAGAAGACGTCCTTAA 58.451 43.478 17.72 17.72 45.51 1.85
2988 5488 5.512573 GTTAAGAAGACGTCCTTAACAGC 57.487 43.478 31.30 17.44 46.80 4.40
2989 5489 2.745515 AGAAGACGTCCTTAACAGCC 57.254 50.000 13.01 0.00 34.68 4.85
2990 5490 1.275573 AGAAGACGTCCTTAACAGCCC 59.724 52.381 13.01 0.00 34.68 5.19
2991 5491 1.001633 GAAGACGTCCTTAACAGCCCA 59.998 52.381 13.01 0.00 34.68 5.36
3049 5549 4.393990 CACACTGCACATAAGACATCACAT 59.606 41.667 0.00 0.00 0.00 3.21
3085 5585 4.281688 AGGGGTCACATTTCACATGAAAAG 59.718 41.667 10.90 9.24 45.81 2.27
3086 5586 4.039124 GGGGTCACATTTCACATGAAAAGT 59.961 41.667 10.90 9.85 45.81 2.66
3130 5631 6.957631 TCAGCCTGATTCTATTGAAAACCTA 58.042 36.000 0.00 0.00 35.63 3.08
3131 5632 7.577303 TCAGCCTGATTCTATTGAAAACCTAT 58.423 34.615 0.00 0.00 35.63 2.57
3132 5633 8.055181 TCAGCCTGATTCTATTGAAAACCTATT 58.945 33.333 0.00 0.00 35.63 1.73
3133 5634 8.348507 CAGCCTGATTCTATTGAAAACCTATTC 58.651 37.037 0.00 0.00 35.63 1.75
3134 5635 8.055181 AGCCTGATTCTATTGAAAACCTATTCA 58.945 33.333 0.00 0.00 37.53 2.57
3135 5636 8.348507 GCCTGATTCTATTGAAAACCTATTCAG 58.651 37.037 7.17 7.17 40.21 3.02
3136 5637 8.844244 CCTGATTCTATTGAAAACCTATTCAGG 58.156 37.037 14.66 14.66 40.26 3.86
3137 5638 8.225603 TGATTCTATTGAAAACCTATTCAGGC 57.774 34.615 0.00 0.00 40.21 4.85
3138 5639 7.012327 TGATTCTATTGAAAACCTATTCAGGCG 59.988 37.037 0.00 0.00 40.21 5.52
3139 5640 7.054124 ATTCTATTGAAAACCTATTCAGGCGA 58.946 34.615 0.00 0.00 40.21 5.54
3140 5641 7.556275 ATTCTATTGAAAACCTATTCAGGCGAA 59.444 33.333 0.00 0.00 40.21 4.70
3149 5650 4.950050 CCTATTCAGGCGAACATAAGACT 58.050 43.478 0.00 0.00 34.35 3.24
3150 5651 6.085555 CCTATTCAGGCGAACATAAGACTA 57.914 41.667 0.00 0.00 34.35 2.59
3151 5652 5.921408 CCTATTCAGGCGAACATAAGACTAC 59.079 44.000 0.00 0.00 34.35 2.73
3152 5653 5.599999 ATTCAGGCGAACATAAGACTACT 57.400 39.130 0.00 0.00 32.81 2.57
3153 5654 4.371855 TCAGGCGAACATAAGACTACTG 57.628 45.455 0.00 0.00 0.00 2.74
3154 5655 4.014406 TCAGGCGAACATAAGACTACTGA 58.986 43.478 0.00 0.00 0.00 3.41
3155 5656 4.106197 CAGGCGAACATAAGACTACTGAC 58.894 47.826 0.00 0.00 0.00 3.51
3156 5657 3.762288 AGGCGAACATAAGACTACTGACA 59.238 43.478 0.00 0.00 0.00 3.58
3157 5658 4.106197 GGCGAACATAAGACTACTGACAG 58.894 47.826 0.00 0.00 0.00 3.51
3158 5659 4.142447 GGCGAACATAAGACTACTGACAGA 60.142 45.833 10.08 0.00 0.00 3.41
3159 5660 5.399858 GCGAACATAAGACTACTGACAGAA 58.600 41.667 10.08 0.00 0.00 3.02
3160 5661 5.513495 GCGAACATAAGACTACTGACAGAAG 59.487 44.000 10.08 0.00 0.00 2.85
3161 5662 6.030849 CGAACATAAGACTACTGACAGAAGG 58.969 44.000 10.08 1.23 0.00 3.46
3162 5663 6.127980 CGAACATAAGACTACTGACAGAAGGA 60.128 42.308 10.08 0.00 0.00 3.36
3163 5664 6.518208 ACATAAGACTACTGACAGAAGGAC 57.482 41.667 10.08 0.00 0.00 3.85
3164 5665 6.010850 ACATAAGACTACTGACAGAAGGACA 58.989 40.000 10.08 0.00 0.00 4.02
3165 5666 6.151985 ACATAAGACTACTGACAGAAGGACAG 59.848 42.308 10.08 0.00 37.62 3.51
3166 5667 3.426615 AGACTACTGACAGAAGGACAGG 58.573 50.000 10.08 0.00 36.17 4.00
3167 5668 1.896465 ACTACTGACAGAAGGACAGGC 59.104 52.381 10.08 0.00 36.17 4.85
3168 5669 0.888619 TACTGACAGAAGGACAGGCG 59.111 55.000 10.08 0.00 36.17 5.52
3169 5670 1.739562 CTGACAGAAGGACAGGCGC 60.740 63.158 0.00 0.00 0.00 6.53
3177 5678 2.357034 GGACAGGCGCAAAGACGA 60.357 61.111 10.83 0.00 34.06 4.20
3178 5679 2.668280 GGACAGGCGCAAAGACGAC 61.668 63.158 10.83 0.00 43.08 4.34
3186 5687 1.136446 GCGCAAAGACGACGTTAACAT 60.136 47.619 0.30 0.00 34.06 2.71
3190 5691 1.986698 AAGACGACGTTAACATCCCG 58.013 50.000 0.13 5.53 0.00 5.14
3251 5755 5.353400 CACAGCATACAAGACATCACAGATT 59.647 40.000 0.00 0.00 0.00 2.40
3280 5787 9.835389 AAAATTTATGGGTCACATTTCATATGG 57.165 29.630 2.13 0.00 41.03 2.74
3281 5788 8.780616 AATTTATGGGTCACATTTCATATGGA 57.219 30.769 2.13 0.00 41.03 3.41
3282 5789 8.780616 ATTTATGGGTCACATTTCATATGGAA 57.219 30.769 0.00 0.00 41.03 3.53
3473 6000 0.537653 GCGGGAGAAAGTAGAAGCCT 59.462 55.000 0.00 0.00 0.00 4.58
3684 6271 3.913163 GCAGTACGCGTTAAGATATCTCC 59.087 47.826 20.78 0.00 0.00 3.71
3763 6358 0.188834 CGGGAGGGGAAGAGTAGGAT 59.811 60.000 0.00 0.00 0.00 3.24
4073 6691 1.890876 TCTGTGTGCGCCTTGTTATT 58.109 45.000 4.18 0.00 0.00 1.40
4074 6692 3.046968 TCTGTGTGCGCCTTGTTATTA 57.953 42.857 4.18 0.00 0.00 0.98
4075 6693 3.605634 TCTGTGTGCGCCTTGTTATTAT 58.394 40.909 4.18 0.00 0.00 1.28
4076 6694 3.621268 TCTGTGTGCGCCTTGTTATTATC 59.379 43.478 4.18 0.00 0.00 1.75
4077 6695 3.605634 TGTGTGCGCCTTGTTATTATCT 58.394 40.909 4.18 0.00 0.00 1.98
4078 6696 4.760878 TGTGTGCGCCTTGTTATTATCTA 58.239 39.130 4.18 0.00 0.00 1.98
4079 6697 4.808895 TGTGTGCGCCTTGTTATTATCTAG 59.191 41.667 4.18 0.00 0.00 2.43
4081 6699 5.047847 TGTGCGCCTTGTTATTATCTAGAC 58.952 41.667 4.18 0.00 0.00 2.59
4082 6700 5.163447 TGTGCGCCTTGTTATTATCTAGACT 60.163 40.000 4.18 0.00 0.00 3.24
4083 6701 5.402867 GTGCGCCTTGTTATTATCTAGACTC 59.597 44.000 4.18 0.00 0.00 3.36
4084 6702 5.302059 TGCGCCTTGTTATTATCTAGACTCT 59.698 40.000 4.18 0.00 0.00 3.24
4168 6793 7.038870 TCAGCACTTTGTTATGTAGGGTAACTA 60.039 37.037 0.00 0.00 34.08 2.24
4239 6866 3.768215 TGAGGGCATATGTTTTTGCATGA 59.232 39.130 4.29 0.00 40.66 3.07
4240 6867 4.114794 GAGGGCATATGTTTTTGCATGAC 58.885 43.478 4.29 0.00 40.66 3.06
4266 6896 2.095567 GCATTTTCGCTTGAGCTGAGAA 60.096 45.455 0.00 3.09 39.32 2.87
4288 6918 0.322187 TTAAGGCCTCTTTGGGTCGC 60.322 55.000 5.23 0.00 35.87 5.19
4328 6960 4.809426 GGTTCGACTCTTTCAAGAACTGAA 59.191 41.667 6.59 0.00 42.48 3.02
4368 7001 7.083858 CGTGGAAAGAACAATTTGACATATGT 58.916 34.615 8.43 8.43 0.00 2.29
4369 7002 8.233868 CGTGGAAAGAACAATTTGACATATGTA 58.766 33.333 8.71 0.00 0.00 2.29
4384 7017 8.073467 TGACATATGTATGGAAAGTCACTACA 57.927 34.615 8.71 0.00 38.00 2.74
4467 7107 4.127171 GCAGCATATATACCCATAACCGG 58.873 47.826 0.00 0.00 0.00 5.28
4469 7109 5.454755 GCAGCATATATACCCATAACCGGAT 60.455 44.000 9.46 0.00 0.00 4.18
4490 7214 1.939934 GCATATGCACGCAAGAACCTA 59.060 47.619 22.84 0.00 41.59 3.08
4498 7222 3.390135 CACGCAAGAACCTAGTGAGAAA 58.610 45.455 0.00 0.00 43.62 2.52
4501 7225 3.997021 CGCAAGAACCTAGTGAGAAATGT 59.003 43.478 0.00 0.00 43.02 2.71
4532 7256 6.255887 CGTCTGAAGAAACAAACTAGTCACTT 59.744 38.462 0.00 0.00 0.00 3.16
4544 7268 1.140312 AGTCACTTCTGGGAGGCAAA 58.860 50.000 0.00 0.00 0.00 3.68
4545 7269 1.202818 AGTCACTTCTGGGAGGCAAAC 60.203 52.381 0.00 0.00 0.00 2.93
4547 7271 0.250295 CACTTCTGGGAGGCAAACGA 60.250 55.000 0.00 0.00 0.00 3.85
4548 7272 0.472471 ACTTCTGGGAGGCAAACGAA 59.528 50.000 0.00 0.00 0.00 3.85
4549 7273 1.073923 ACTTCTGGGAGGCAAACGAAT 59.926 47.619 0.00 0.00 0.00 3.34
4601 7359 6.447162 TGCGGACATATAGAATACACAAGAG 58.553 40.000 0.00 0.00 0.00 2.85
4667 7425 8.434589 AAAATGGGGAAATAGAATCACTGAAA 57.565 30.769 0.00 0.00 0.00 2.69
4708 7466 4.082733 CGAGGCTAATAGCACACTATAGCA 60.083 45.833 14.76 0.00 44.75 3.49
4720 7478 7.923888 AGCACACTATAGCATGTAGAAAATTG 58.076 34.615 0.00 0.00 0.00 2.32
4724 7482 9.319143 ACACTATAGCATGTAGAAAATTGTCTC 57.681 33.333 0.00 0.00 0.00 3.36
4762 7520 8.425577 AATGTACAATGTCTCACTAATAGCAC 57.574 34.615 0.00 0.00 0.00 4.40
4763 7521 6.930731 TGTACAATGTCTCACTAATAGCACA 58.069 36.000 0.00 0.00 0.00 4.57
4764 7522 6.811665 TGTACAATGTCTCACTAATAGCACAC 59.188 38.462 0.00 0.00 0.00 3.82
4771 7529 6.081049 GTCTCACTAATAGCACACTATAGCG 58.919 44.000 0.00 0.00 38.18 4.26
4773 7531 4.277423 TCACTAATAGCACACTATAGCGCA 59.723 41.667 11.47 0.00 38.18 6.09
4774 7532 4.383052 CACTAATAGCACACTATAGCGCAC 59.617 45.833 11.47 0.00 38.18 5.34
4783 7541 4.982295 CACACTATAGCGCACTTTAGCATA 59.018 41.667 11.47 0.00 32.41 3.14
4787 7545 7.030165 CACTATAGCGCACTTTAGCATACTAT 58.970 38.462 11.47 0.00 32.41 2.12
4788 7546 8.182227 CACTATAGCGCACTTTAGCATACTATA 58.818 37.037 11.47 0.00 32.41 1.31
4790 7548 9.737427 CTATAGCGCACTTTAGCATACTATAAT 57.263 33.333 11.47 0.00 31.95 1.28
4792 7550 9.737427 ATAGCGCACTTTAGCATACTATAATAG 57.263 33.333 11.47 0.00 35.48 1.73
4794 7552 6.310467 GCGCACTTTAGCATACTATAATAGCA 59.690 38.462 0.30 0.00 0.00 3.49
4795 7553 7.667283 CGCACTTTAGCATACTATAATAGCAC 58.333 38.462 0.00 0.00 0.00 4.40
4796 7554 7.328493 CGCACTTTAGCATACTATAATAGCACA 59.672 37.037 0.00 0.00 0.00 4.57
4797 7555 8.988934 GCACTTTAGCATACTATAATAGCACAA 58.011 33.333 0.00 0.00 0.00 3.33
4809 7567 6.877611 ATAATAGCACAATTTAAGGGACGG 57.122 37.500 0.00 0.00 0.00 4.79
4810 7568 2.579410 AGCACAATTTAAGGGACGGT 57.421 45.000 0.00 0.00 0.00 4.83
4835 7593 6.249478 CTATTCTGTATAGCGCGCTATTTC 57.751 41.667 46.76 37.61 39.65 2.17
4845 7603 2.177173 CGCGCTATTTCTTTTCCTTGC 58.823 47.619 5.56 0.00 0.00 4.01
4849 7607 5.523369 GCGCTATTTCTTTTCCTTGCATAT 58.477 37.500 0.00 0.00 0.00 1.78
4901 7659 7.094762 ACCTAGAAAATCAGAAAATCGGTTGTC 60.095 37.037 0.00 0.00 0.00 3.18
4902 7660 6.884280 AGAAAATCAGAAAATCGGTTGTCT 57.116 33.333 0.00 0.00 0.00 3.41
4907 7665 3.071023 TCAGAAAATCGGTTGTCTGGAGT 59.929 43.478 25.04 0.00 38.42 3.85
4931 7689 8.091449 AGTGATAAGTCTTGTACTCTTTGGAAG 58.909 37.037 0.00 0.00 37.50 3.46
4940 7698 1.705745 ACTCTTTGGAAGAACCCCCTC 59.294 52.381 0.00 0.00 37.02 4.30
4941 7699 1.004862 CTCTTTGGAAGAACCCCCTCC 59.995 57.143 0.00 0.00 37.02 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 1.556911 CCACTCCTGGCTGTACAAGAT 59.443 52.381 0.00 0.00 0.00 2.40
143 144 0.104934 ACCCTGTCTTGTCCACTCCT 60.105 55.000 0.00 0.00 0.00 3.69
148 149 1.074090 TCCCACCCTGTCTTGTCCA 60.074 57.895 0.00 0.00 0.00 4.02
302 306 5.742453 GCATGAGCTTGATTTTGACAGTATG 59.258 40.000 0.00 0.00 39.32 2.39
305 309 3.057033 GGCATGAGCTTGATTTTGACAGT 60.057 43.478 0.00 0.00 41.70 3.55
371 492 6.638096 TGATTAGGATACATGCATTTGGTG 57.362 37.500 0.00 0.00 41.41 4.17
372 493 7.288389 ACATTGATTAGGATACATGCATTTGGT 59.712 33.333 0.00 0.00 41.41 3.67
373 494 7.663827 ACATTGATTAGGATACATGCATTTGG 58.336 34.615 0.00 0.00 41.41 3.28
374 495 9.537192 AAACATTGATTAGGATACATGCATTTG 57.463 29.630 0.00 0.00 41.41 2.32
385 506 8.576442 CCCGCTATTTAAAACATTGATTAGGAT 58.424 33.333 0.00 0.00 0.00 3.24
386 507 7.469456 GCCCGCTATTTAAAACATTGATTAGGA 60.469 37.037 0.00 0.00 0.00 2.94
387 508 6.640907 GCCCGCTATTTAAAACATTGATTAGG 59.359 38.462 0.00 0.00 0.00 2.69
388 509 7.425606 AGCCCGCTATTTAAAACATTGATTAG 58.574 34.615 0.00 0.00 0.00 1.73
389 510 7.341445 AGCCCGCTATTTAAAACATTGATTA 57.659 32.000 0.00 0.00 0.00 1.75
390 511 6.220726 AGCCCGCTATTTAAAACATTGATT 57.779 33.333 0.00 0.00 0.00 2.57
391 512 5.852282 AGCCCGCTATTTAAAACATTGAT 57.148 34.783 0.00 0.00 0.00 2.57
392 513 6.238897 CCATAGCCCGCTATTTAAAACATTGA 60.239 38.462 6.48 0.00 37.16 2.57
393 514 5.920273 CCATAGCCCGCTATTTAAAACATTG 59.080 40.000 6.48 0.00 37.16 2.82
394 515 5.830991 TCCATAGCCCGCTATTTAAAACATT 59.169 36.000 6.48 0.00 37.16 2.71
395 516 5.381757 TCCATAGCCCGCTATTTAAAACAT 58.618 37.500 6.48 0.00 37.16 2.71
396 517 4.783055 TCCATAGCCCGCTATTTAAAACA 58.217 39.130 6.48 0.00 37.16 2.83
397 518 5.761165 TTCCATAGCCCGCTATTTAAAAC 57.239 39.130 6.48 0.00 37.16 2.43
398 519 6.777213 TTTTCCATAGCCCGCTATTTAAAA 57.223 33.333 6.48 12.19 37.16 1.52
399 520 6.969993 ATTTTCCATAGCCCGCTATTTAAA 57.030 33.333 6.48 7.56 37.16 1.52
400 521 6.150474 GCTATTTTCCATAGCCCGCTATTTAA 59.850 38.462 6.48 2.15 40.69 1.52
401 522 5.646360 GCTATTTTCCATAGCCCGCTATTTA 59.354 40.000 6.48 0.00 40.69 1.40
402 523 4.459337 GCTATTTTCCATAGCCCGCTATTT 59.541 41.667 6.48 0.00 40.69 1.40
403 524 4.010349 GCTATTTTCCATAGCCCGCTATT 58.990 43.478 6.48 0.00 40.69 1.73
404 525 3.610911 GCTATTTTCCATAGCCCGCTAT 58.389 45.455 3.31 3.31 40.69 2.97
405 526 2.611971 CGCTATTTTCCATAGCCCGCTA 60.612 50.000 8.01 0.00 42.89 4.26
406 527 1.878102 CGCTATTTTCCATAGCCCGCT 60.878 52.381 8.01 0.00 42.89 5.52
407 528 0.517316 CGCTATTTTCCATAGCCCGC 59.483 55.000 8.01 0.00 42.89 6.13
408 529 1.156736 CCGCTATTTTCCATAGCCCG 58.843 55.000 8.01 0.00 42.89 6.13
409 530 0.881796 GCCGCTATTTTCCATAGCCC 59.118 55.000 8.01 0.00 42.89 5.19
410 531 0.517316 CGCCGCTATTTTCCATAGCC 59.483 55.000 8.01 0.00 42.89 3.93
411 532 0.517316 CCGCCGCTATTTTCCATAGC 59.483 55.000 4.08 4.08 42.53 2.97
412 533 1.156736 CCCGCCGCTATTTTCCATAG 58.843 55.000 0.00 0.00 0.00 2.23
413 534 0.887387 GCCCGCCGCTATTTTCCATA 60.887 55.000 0.00 0.00 0.00 2.74
414 535 2.193536 GCCCGCCGCTATTTTCCAT 61.194 57.895 0.00 0.00 0.00 3.41
415 536 2.826738 GCCCGCCGCTATTTTCCA 60.827 61.111 0.00 0.00 0.00 3.53
416 537 3.592814 GGCCCGCCGCTATTTTCC 61.593 66.667 0.00 0.00 37.74 3.13
417 538 2.516225 AGGCCCGCCGCTATTTTC 60.516 61.111 0.00 0.00 41.95 2.29
418 539 2.516225 GAGGCCCGCCGCTATTTT 60.516 61.111 0.00 0.00 41.95 1.82
419 540 4.564110 GGAGGCCCGCCGCTATTT 62.564 66.667 9.41 0.00 41.95 1.40
425 546 4.794648 TGATTTGGAGGCCCGCCG 62.795 66.667 0.00 0.00 41.95 6.46
426 547 2.830370 CTGATTTGGAGGCCCGCC 60.830 66.667 0.00 1.12 34.29 6.13
427 548 2.608970 TAGCTGATTTGGAGGCCCGC 62.609 60.000 0.00 0.00 34.29 6.13
428 549 0.109342 ATAGCTGATTTGGAGGCCCG 59.891 55.000 0.00 0.00 34.29 6.13
429 550 3.149981 GTTATAGCTGATTTGGAGGCCC 58.850 50.000 0.00 0.00 0.00 5.80
430 551 2.808543 CGTTATAGCTGATTTGGAGGCC 59.191 50.000 0.00 0.00 0.00 5.19
431 552 2.808543 CCGTTATAGCTGATTTGGAGGC 59.191 50.000 0.00 0.00 0.00 4.70
432 553 3.403038 CCCGTTATAGCTGATTTGGAGG 58.597 50.000 0.00 0.00 0.00 4.30
433 554 2.808543 GCCCGTTATAGCTGATTTGGAG 59.191 50.000 0.00 0.00 0.00 3.86
434 555 2.438021 AGCCCGTTATAGCTGATTTGGA 59.562 45.455 0.00 0.00 38.11 3.53
435 556 2.851195 AGCCCGTTATAGCTGATTTGG 58.149 47.619 0.00 0.00 38.11 3.28
436 557 5.560953 GCTTTAGCCCGTTATAGCTGATTTG 60.561 44.000 0.00 0.00 40.28 2.32
437 558 4.515567 GCTTTAGCCCGTTATAGCTGATTT 59.484 41.667 0.00 0.00 40.28 2.17
438 559 4.065789 GCTTTAGCCCGTTATAGCTGATT 58.934 43.478 0.00 0.00 40.28 2.57
439 560 3.665190 GCTTTAGCCCGTTATAGCTGAT 58.335 45.455 0.00 0.00 40.28 2.90
440 561 2.545113 CGCTTTAGCCCGTTATAGCTGA 60.545 50.000 0.00 0.00 40.28 4.26
441 562 1.792949 CGCTTTAGCCCGTTATAGCTG 59.207 52.381 0.00 0.00 40.28 4.24
442 563 1.270147 CCGCTTTAGCCCGTTATAGCT 60.270 52.381 0.00 0.00 43.20 3.32
443 564 1.145803 CCGCTTTAGCCCGTTATAGC 58.854 55.000 0.00 0.00 37.91 2.97
444 565 1.792006 CCCGCTTTAGCCCGTTATAG 58.208 55.000 0.00 0.00 37.91 1.31
445 566 0.249996 GCCCGCTTTAGCCCGTTATA 60.250 55.000 0.00 0.00 37.91 0.98
446 567 1.525306 GCCCGCTTTAGCCCGTTAT 60.525 57.895 0.00 0.00 37.91 1.89
447 568 1.329171 TAGCCCGCTTTAGCCCGTTA 61.329 55.000 0.00 0.00 37.91 3.18
448 569 1.979619 ATAGCCCGCTTTAGCCCGTT 61.980 55.000 0.00 0.00 37.91 4.44
449 570 1.979619 AATAGCCCGCTTTAGCCCGT 61.980 55.000 0.00 0.00 37.91 5.28
450 571 0.818040 AAATAGCCCGCTTTAGCCCG 60.818 55.000 0.00 0.00 37.91 6.13
451 572 2.265589 TAAATAGCCCGCTTTAGCCC 57.734 50.000 0.00 0.00 37.91 5.19
452 573 3.408634 TCATAAATAGCCCGCTTTAGCC 58.591 45.455 0.00 0.00 37.91 3.93
453 574 4.083271 CCTTCATAAATAGCCCGCTTTAGC 60.083 45.833 0.00 0.00 37.78 3.09
454 575 4.083271 GCCTTCATAAATAGCCCGCTTTAG 60.083 45.833 0.00 0.00 0.00 1.85
455 576 3.818773 GCCTTCATAAATAGCCCGCTTTA 59.181 43.478 0.00 0.00 0.00 1.85
456 577 2.623416 GCCTTCATAAATAGCCCGCTTT 59.377 45.455 0.00 0.00 0.00 3.51
457 578 2.230660 GCCTTCATAAATAGCCCGCTT 58.769 47.619 0.00 0.00 0.00 4.68
458 579 1.142870 TGCCTTCATAAATAGCCCGCT 59.857 47.619 0.00 0.00 0.00 5.52
459 580 1.537202 CTGCCTTCATAAATAGCCCGC 59.463 52.381 0.00 0.00 0.00 6.13
460 581 2.808543 GACTGCCTTCATAAATAGCCCG 59.191 50.000 0.00 0.00 0.00 6.13
461 582 3.820557 TGACTGCCTTCATAAATAGCCC 58.179 45.455 0.00 0.00 0.00 5.19
462 583 6.396829 AAATGACTGCCTTCATAAATAGCC 57.603 37.500 0.00 0.00 35.02 3.93
463 584 8.072567 CACTAAATGACTGCCTTCATAAATAGC 58.927 37.037 0.00 0.00 35.02 2.97
464 585 8.562892 CCACTAAATGACTGCCTTCATAAATAG 58.437 37.037 0.00 4.79 35.02 1.73
465 586 7.013274 GCCACTAAATGACTGCCTTCATAAATA 59.987 37.037 0.00 0.00 35.02 1.40
466 587 6.183360 GCCACTAAATGACTGCCTTCATAAAT 60.183 38.462 0.00 0.00 35.02 1.40
467 588 5.125417 GCCACTAAATGACTGCCTTCATAAA 59.875 40.000 0.00 0.00 35.02 1.40
468 589 4.640201 GCCACTAAATGACTGCCTTCATAA 59.360 41.667 0.00 0.00 35.02 1.90
469 590 4.199310 GCCACTAAATGACTGCCTTCATA 58.801 43.478 0.00 0.00 35.02 2.15
470 591 3.019564 GCCACTAAATGACTGCCTTCAT 58.980 45.455 0.00 0.00 37.87 2.57
471 592 2.224744 TGCCACTAAATGACTGCCTTCA 60.225 45.455 0.00 0.00 0.00 3.02
472 593 2.162408 GTGCCACTAAATGACTGCCTTC 59.838 50.000 0.00 0.00 0.00 3.46
473 594 2.162681 GTGCCACTAAATGACTGCCTT 58.837 47.619 0.00 0.00 0.00 4.35
474 595 1.614317 GGTGCCACTAAATGACTGCCT 60.614 52.381 0.00 0.00 0.00 4.75
475 596 0.811281 GGTGCCACTAAATGACTGCC 59.189 55.000 0.00 0.00 0.00 4.85
476 597 0.811281 GGGTGCCACTAAATGACTGC 59.189 55.000 0.00 0.00 0.00 4.40
477 598 2.086869 CAGGGTGCCACTAAATGACTG 58.913 52.381 0.00 0.00 0.00 3.51
478 599 1.614317 GCAGGGTGCCACTAAATGACT 60.614 52.381 0.00 0.00 37.42 3.41
479 600 0.811281 GCAGGGTGCCACTAAATGAC 59.189 55.000 0.00 0.00 37.42 3.06
480 601 0.698238 AGCAGGGTGCCACTAAATGA 59.302 50.000 0.00 0.00 46.52 2.57
481 602 0.813184 CAGCAGGGTGCCACTAAATG 59.187 55.000 0.00 0.00 46.52 2.32
482 603 0.698238 TCAGCAGGGTGCCACTAAAT 59.302 50.000 0.00 0.00 46.52 1.40
483 604 0.476338 TTCAGCAGGGTGCCACTAAA 59.524 50.000 0.00 0.00 46.52 1.85
484 605 0.476338 TTTCAGCAGGGTGCCACTAA 59.524 50.000 0.00 0.00 46.52 2.24
485 606 0.476338 TTTTCAGCAGGGTGCCACTA 59.524 50.000 0.00 0.00 46.52 2.74
486 607 0.825010 CTTTTCAGCAGGGTGCCACT 60.825 55.000 0.00 0.00 46.52 4.00
487 608 1.662044 CTTTTCAGCAGGGTGCCAC 59.338 57.895 0.00 0.00 46.52 5.01
488 609 1.531365 CCTTTTCAGCAGGGTGCCA 60.531 57.895 0.00 0.00 46.52 4.92
489 610 2.935740 GCCTTTTCAGCAGGGTGCC 61.936 63.158 0.00 0.00 46.52 5.01
490 611 0.609131 TAGCCTTTTCAGCAGGGTGC 60.609 55.000 2.17 0.00 42.32 5.01
491 612 2.134789 ATAGCCTTTTCAGCAGGGTG 57.865 50.000 2.17 0.00 42.32 4.61
492 613 2.422093 GCTATAGCCTTTTCAGCAGGGT 60.422 50.000 14.13 0.00 44.56 4.34
493 614 2.225467 GCTATAGCCTTTTCAGCAGGG 58.775 52.381 14.13 0.00 34.31 4.45
494 615 1.869767 CGCTATAGCCTTTTCAGCAGG 59.130 52.381 19.00 0.00 37.91 4.85
495 616 1.869767 CCGCTATAGCCTTTTCAGCAG 59.130 52.381 19.00 0.81 37.91 4.24
496 617 1.475034 CCCGCTATAGCCTTTTCAGCA 60.475 52.381 19.00 0.00 37.91 4.41
497 618 1.230324 CCCGCTATAGCCTTTTCAGC 58.770 55.000 19.00 0.00 37.91 4.26
498 619 2.622064 ACCCGCTATAGCCTTTTCAG 57.378 50.000 19.00 2.99 37.91 3.02
499 620 4.699925 ATAACCCGCTATAGCCTTTTCA 57.300 40.909 19.00 0.91 37.91 2.69
500 621 4.630505 GCTATAACCCGCTATAGCCTTTTC 59.369 45.833 19.00 0.00 45.92 2.29
501 622 4.576879 GCTATAACCCGCTATAGCCTTTT 58.423 43.478 19.00 11.09 45.92 2.27
502 623 4.203654 GCTATAACCCGCTATAGCCTTT 57.796 45.455 19.00 11.42 45.92 3.11
503 624 3.889520 GCTATAACCCGCTATAGCCTT 57.110 47.619 19.00 10.09 45.92 4.35
507 628 3.128938 AGCTTCGCTATAACCCGCTATAG 59.871 47.826 0.00 0.00 36.99 1.31
508 629 3.087031 AGCTTCGCTATAACCCGCTATA 58.913 45.455 0.00 0.00 36.99 1.31
509 630 1.893801 AGCTTCGCTATAACCCGCTAT 59.106 47.619 0.00 0.00 36.99 2.97
510 631 1.325355 AGCTTCGCTATAACCCGCTA 58.675 50.000 0.00 0.00 36.99 4.26
511 632 1.325355 TAGCTTCGCTATAACCCGCT 58.675 50.000 0.00 0.00 40.44 5.52
512 633 3.879912 TAGCTTCGCTATAACCCGC 57.120 52.632 0.00 0.00 40.44 6.13
520 641 0.894184 AGCCGGCTATAGCTTCGCTA 60.894 55.000 31.86 0.00 45.55 4.26
521 642 0.894184 TAGCCGGCTATAGCTTCGCT 60.894 55.000 32.24 25.87 43.41 4.93
522 643 0.173708 ATAGCCGGCTATAGCTTCGC 59.826 55.000 41.03 20.23 40.56 4.70
523 644 2.656560 AATAGCCGGCTATAGCTTCG 57.343 50.000 41.53 18.50 40.56 3.79
524 645 6.427242 AGTTTTAAATAGCCGGCTATAGCTTC 59.573 38.462 41.53 29.01 40.56 3.86
525 646 6.296803 AGTTTTAAATAGCCGGCTATAGCTT 58.703 36.000 41.53 33.42 40.56 3.74
526 647 5.866207 AGTTTTAAATAGCCGGCTATAGCT 58.134 37.500 41.53 30.55 43.20 3.32
527 648 7.548075 TCATAGTTTTAAATAGCCGGCTATAGC 59.452 37.037 41.53 29.09 38.20 2.97
528 649 8.997621 TCATAGTTTTAAATAGCCGGCTATAG 57.002 34.615 41.53 22.50 38.20 1.31
529 650 9.595823 GATCATAGTTTTAAATAGCCGGCTATA 57.404 33.333 41.53 28.18 38.20 1.31
530 651 7.553044 GGATCATAGTTTTAAATAGCCGGCTAT 59.447 37.037 37.79 37.79 40.63 2.97
531 652 6.877322 GGATCATAGTTTTAAATAGCCGGCTA 59.123 38.462 36.88 36.88 0.00 3.93
532 653 5.705905 GGATCATAGTTTTAAATAGCCGGCT 59.294 40.000 34.85 34.85 0.00 5.52
533 654 5.705905 AGGATCATAGTTTTAAATAGCCGGC 59.294 40.000 21.89 21.89 0.00 6.13
534 655 6.934645 TCAGGATCATAGTTTTAAATAGCCGG 59.065 38.462 0.00 0.00 0.00 6.13
535 656 7.962964 TCAGGATCATAGTTTTAAATAGCCG 57.037 36.000 0.00 0.00 0.00 5.52
564 685 9.170734 GCTTCAGGCATCTTTATATATGATTCA 57.829 33.333 0.00 0.00 41.35 2.57
582 703 1.000060 TGCAAAGTTGATGCTTCAGGC 60.000 47.619 2.23 4.42 44.14 4.85
583 704 3.587797 ATGCAAAGTTGATGCTTCAGG 57.412 42.857 2.23 0.00 44.14 3.86
584 705 8.132995 TGAATATATGCAAAGTTGATGCTTCAG 58.867 33.333 2.23 0.00 44.14 3.02
585 706 7.998580 TGAATATATGCAAAGTTGATGCTTCA 58.001 30.769 0.00 0.00 44.14 3.02
586 707 8.347771 TCTGAATATATGCAAAGTTGATGCTTC 58.652 33.333 0.00 0.00 44.14 3.86
587 708 8.229253 TCTGAATATATGCAAAGTTGATGCTT 57.771 30.769 0.00 0.00 44.14 3.91
588 709 7.501559 ACTCTGAATATATGCAAAGTTGATGCT 59.498 33.333 0.00 0.00 44.14 3.79
589 710 7.590322 CACTCTGAATATATGCAAAGTTGATGC 59.410 37.037 0.00 0.00 44.08 3.91
590 711 7.590322 GCACTCTGAATATATGCAAAGTTGATG 59.410 37.037 0.00 0.00 36.30 3.07
591 712 7.283807 TGCACTCTGAATATATGCAAAGTTGAT 59.716 33.333 0.00 0.00 43.00 2.57
592 713 6.598850 TGCACTCTGAATATATGCAAAGTTGA 59.401 34.615 0.00 0.00 43.00 3.18
593 714 6.788243 TGCACTCTGAATATATGCAAAGTTG 58.212 36.000 0.00 0.00 43.00 3.16
599 720 4.768583 TGTGTGCACTCTGAATATATGCA 58.231 39.130 19.41 0.00 43.70 3.96
600 721 5.739752 TTGTGTGCACTCTGAATATATGC 57.260 39.130 19.41 0.00 36.81 3.14
601 722 6.963242 GTGTTTGTGTGCACTCTGAATATATG 59.037 38.462 19.41 0.00 33.22 1.78
734 1229 1.229820 ACCATGGGTGCTAGGACCA 60.230 57.895 31.63 19.28 37.80 4.02
788 1291 0.950116 GGTATGAGCAGATGCAAGCC 59.050 55.000 7.68 0.00 45.16 4.35
824 1327 5.917462 GGCATTGAAAATATAGCCCACTTT 58.083 37.500 0.00 0.00 36.17 2.66
1158 1830 4.441792 ACAAGAAGGAATGGTGCAAAAAC 58.558 39.130 0.00 0.00 0.00 2.43
1363 2037 5.008217 TGTTTCCAAGGTAACGAAACATCAG 59.992 40.000 9.80 0.00 44.25 2.90
1387 2061 2.579410 ATTGTAACCTTGAAGCGGGT 57.421 45.000 0.00 0.00 37.44 5.28
1545 2219 5.821470 GCTTCCATCTGAATCTGATCTTTCA 59.179 40.000 0.00 0.57 31.06 2.69
1684 2358 9.574516 AATAAGTTTCAACAGTAAGAGGACATT 57.425 29.630 0.00 0.00 0.00 2.71
2001 4368 5.345741 CGAAACCGTCTTTCCGAAATAGTAA 59.654 40.000 0.00 0.00 0.00 2.24
2053 4420 8.770828 CAGAGGTTCAAACGTATTTAGAAAAGA 58.229 33.333 0.00 0.00 0.00 2.52
2079 4446 2.294074 TGCGAAGGGCCATGTATTAAC 58.706 47.619 6.18 0.00 42.61 2.01
2134 4501 2.441750 TGAGTAGCAAACCCTCAACCTT 59.558 45.455 0.00 0.00 32.55 3.50
2144 4511 6.529463 ACAATGCAAAAATGAGTAGCAAAC 57.471 33.333 0.00 0.00 38.85 2.93
2191 4559 9.638239 GTTTTGCAAAAATATTCTACATCAGGA 57.362 29.630 25.40 0.00 0.00 3.86
2226 4594 0.820226 CTCAGGTTCGGATCTCAGCA 59.180 55.000 0.00 0.00 0.00 4.41
2376 4744 7.443879 ACCTTAAAACCATCAAAATTTGCGAAT 59.556 29.630 0.00 0.00 0.00 3.34
2514 4883 9.722056 CTTCAACTGATAAGGCAACAATAATAC 57.278 33.333 0.00 0.00 41.41 1.89
2896 5396 1.021390 GTGTCATCCCTGCTGTTCCG 61.021 60.000 0.00 0.00 0.00 4.30
2967 5467 4.562143 GGGCTGTTAAGGACGTCTTCTTAA 60.562 45.833 16.46 17.24 36.93 1.85
2968 5468 3.056322 GGGCTGTTAAGGACGTCTTCTTA 60.056 47.826 16.46 12.34 36.93 2.10
2969 5469 2.289506 GGGCTGTTAAGGACGTCTTCTT 60.290 50.000 16.46 13.36 36.93 2.52
2970 5470 1.275573 GGGCTGTTAAGGACGTCTTCT 59.724 52.381 16.46 1.50 36.93 2.85
2971 5471 1.001633 TGGGCTGTTAAGGACGTCTTC 59.998 52.381 16.46 0.00 36.93 2.87
2972 5472 1.053424 TGGGCTGTTAAGGACGTCTT 58.947 50.000 16.46 4.52 39.40 3.01
2973 5473 1.066143 CATGGGCTGTTAAGGACGTCT 60.066 52.381 16.46 0.00 0.00 4.18
2974 5474 1.338769 ACATGGGCTGTTAAGGACGTC 60.339 52.381 7.13 7.13 32.90 4.34
2975 5475 0.690762 ACATGGGCTGTTAAGGACGT 59.309 50.000 0.00 0.00 32.90 4.34
2976 5476 1.821216 AACATGGGCTGTTAAGGACG 58.179 50.000 0.00 0.00 46.30 4.79
2982 5482 3.186283 TCCTCCTTAACATGGGCTGTTA 58.814 45.455 0.00 0.00 46.30 2.41
2984 5484 1.668826 TCCTCCTTAACATGGGCTGT 58.331 50.000 0.00 0.00 40.84 4.40
2985 5485 2.369394 GTTCCTCCTTAACATGGGCTG 58.631 52.381 0.00 0.00 0.00 4.85
2986 5486 1.285078 GGTTCCTCCTTAACATGGGCT 59.715 52.381 0.00 0.00 0.00 5.19
2987 5487 1.005450 TGGTTCCTCCTTAACATGGGC 59.995 52.381 0.00 0.00 37.07 5.36
2988 5488 2.945890 GCTGGTTCCTCCTTAACATGGG 60.946 54.545 0.00 0.00 37.07 4.00
2989 5489 2.369394 GCTGGTTCCTCCTTAACATGG 58.631 52.381 0.00 0.00 37.07 3.66
2990 5490 2.290896 TGGCTGGTTCCTCCTTAACATG 60.291 50.000 0.00 0.00 37.07 3.21
2991 5491 1.992557 TGGCTGGTTCCTCCTTAACAT 59.007 47.619 0.00 0.00 37.07 2.71
3049 5549 8.602472 AAATGTGACCCCTAAATTTTAGCATA 57.398 30.769 10.16 3.02 0.00 3.14
3063 5563 4.039124 ACTTTTCATGTGAAATGTGACCCC 59.961 41.667 19.80 0.00 45.01 4.95
3130 5631 5.127194 TCAGTAGTCTTATGTTCGCCTGAAT 59.873 40.000 0.00 0.00 36.29 2.57
3131 5632 4.461431 TCAGTAGTCTTATGTTCGCCTGAA 59.539 41.667 0.00 0.00 0.00 3.02
3132 5633 4.014406 TCAGTAGTCTTATGTTCGCCTGA 58.986 43.478 0.00 0.00 0.00 3.86
3133 5634 4.106197 GTCAGTAGTCTTATGTTCGCCTG 58.894 47.826 0.00 0.00 0.00 4.85
3134 5635 3.762288 TGTCAGTAGTCTTATGTTCGCCT 59.238 43.478 0.00 0.00 0.00 5.52
3135 5636 4.106029 TGTCAGTAGTCTTATGTTCGCC 57.894 45.455 0.00 0.00 0.00 5.54
3136 5637 4.982999 TCTGTCAGTAGTCTTATGTTCGC 58.017 43.478 0.00 0.00 0.00 4.70
3137 5638 6.030849 CCTTCTGTCAGTAGTCTTATGTTCG 58.969 44.000 5.83 0.00 0.00 3.95
3138 5639 7.030768 GTCCTTCTGTCAGTAGTCTTATGTTC 58.969 42.308 5.83 0.00 0.00 3.18
3139 5640 6.493802 TGTCCTTCTGTCAGTAGTCTTATGTT 59.506 38.462 5.83 0.00 0.00 2.71
3140 5641 6.010850 TGTCCTTCTGTCAGTAGTCTTATGT 58.989 40.000 5.83 0.00 0.00 2.29
3141 5642 6.405286 CCTGTCCTTCTGTCAGTAGTCTTATG 60.405 46.154 5.83 0.00 0.00 1.90
3142 5643 5.654650 CCTGTCCTTCTGTCAGTAGTCTTAT 59.345 44.000 5.83 0.00 0.00 1.73
3143 5644 5.010933 CCTGTCCTTCTGTCAGTAGTCTTA 58.989 45.833 5.83 0.00 0.00 2.10
3144 5645 3.829601 CCTGTCCTTCTGTCAGTAGTCTT 59.170 47.826 5.83 0.00 0.00 3.01
3145 5646 3.426615 CCTGTCCTTCTGTCAGTAGTCT 58.573 50.000 5.83 0.00 0.00 3.24
3146 5647 2.094442 GCCTGTCCTTCTGTCAGTAGTC 60.094 54.545 5.83 0.38 0.00 2.59
3147 5648 1.896465 GCCTGTCCTTCTGTCAGTAGT 59.104 52.381 5.83 0.00 0.00 2.73
3148 5649 1.135257 CGCCTGTCCTTCTGTCAGTAG 60.135 57.143 0.00 0.00 0.00 2.57
3149 5650 0.888619 CGCCTGTCCTTCTGTCAGTA 59.111 55.000 0.00 0.00 0.00 2.74
3150 5651 1.668294 CGCCTGTCCTTCTGTCAGT 59.332 57.895 0.00 0.00 0.00 3.41
3151 5652 1.739562 GCGCCTGTCCTTCTGTCAG 60.740 63.158 0.00 0.00 0.00 3.51
3152 5653 2.038814 TTGCGCCTGTCCTTCTGTCA 62.039 55.000 4.18 0.00 0.00 3.58
3153 5654 0.884704 TTTGCGCCTGTCCTTCTGTC 60.885 55.000 4.18 0.00 0.00 3.51
3154 5655 0.886490 CTTTGCGCCTGTCCTTCTGT 60.886 55.000 4.18 0.00 0.00 3.41
3155 5656 0.603707 TCTTTGCGCCTGTCCTTCTG 60.604 55.000 4.18 0.00 0.00 3.02
3156 5657 0.603975 GTCTTTGCGCCTGTCCTTCT 60.604 55.000 4.18 0.00 0.00 2.85
3157 5658 1.869690 GTCTTTGCGCCTGTCCTTC 59.130 57.895 4.18 0.00 0.00 3.46
3158 5659 1.961277 CGTCTTTGCGCCTGTCCTT 60.961 57.895 4.18 0.00 0.00 3.36
3159 5660 2.357517 CGTCTTTGCGCCTGTCCT 60.358 61.111 4.18 0.00 0.00 3.85
3160 5661 2.357034 TCGTCTTTGCGCCTGTCC 60.357 61.111 4.18 0.00 0.00 4.02
3161 5662 2.853914 GTCGTCTTTGCGCCTGTC 59.146 61.111 4.18 0.00 0.00 3.51
3162 5663 3.036084 CGTCGTCTTTGCGCCTGT 61.036 61.111 4.18 0.00 0.00 4.00
3163 5664 1.279527 TAACGTCGTCTTTGCGCCTG 61.280 55.000 4.18 0.00 0.00 4.85
3164 5665 0.598158 TTAACGTCGTCTTTGCGCCT 60.598 50.000 4.18 0.00 0.00 5.52
3165 5666 0.449993 GTTAACGTCGTCTTTGCGCC 60.450 55.000 4.18 0.00 0.00 6.53
3166 5667 0.230260 TGTTAACGTCGTCTTTGCGC 59.770 50.000 0.00 0.00 0.00 6.09
3167 5668 2.471749 GGATGTTAACGTCGTCTTTGCG 60.472 50.000 19.12 0.00 32.78 4.85
3168 5669 2.159747 GGGATGTTAACGTCGTCTTTGC 60.160 50.000 19.12 5.77 32.78 3.68
3169 5670 2.091588 CGGGATGTTAACGTCGTCTTTG 59.908 50.000 19.12 4.15 32.78 2.77
3186 5687 0.978907 GGTTCCTCCTTAACACGGGA 59.021 55.000 0.00 0.00 0.00 5.14
3190 5691 2.861147 AGCTGGTTCCTCCTTAACAC 57.139 50.000 0.00 0.00 37.07 3.32
3294 5810 9.692325 AAAGGATCAAGCTAAATAGATGAAACT 57.308 29.630 0.00 0.00 0.00 2.66
3346 5873 4.840680 TCCTCTTCAGGTCTCAAAGATGAA 59.159 41.667 0.00 0.00 41.28 2.57
3356 5883 2.043664 TGTCTCCATCCTCTTCAGGTCT 59.956 50.000 0.00 0.00 41.28 3.85
3473 6000 4.395959 AAACTGGTACTGTCGACTCAAA 57.604 40.909 17.92 0.00 40.38 2.69
3529 6059 7.907214 ACTTACTATTATCATGCCGGATTTC 57.093 36.000 5.05 0.00 0.00 2.17
3677 6264 7.551617 CCGGTAAAGTACTGTTTTTGGAGATAT 59.448 37.037 0.00 0.00 33.14 1.63
3684 6271 3.315749 TGCCCGGTAAAGTACTGTTTTTG 59.684 43.478 0.00 0.00 33.14 2.44
3763 6358 4.314440 GCAGCTCCGTGTCCCACA 62.314 66.667 0.00 0.00 33.40 4.17
4073 6691 8.637099 CATCCAAAGTCATTCAGAGTCTAGATA 58.363 37.037 0.00 0.00 0.00 1.98
4074 6692 7.418827 CCATCCAAAGTCATTCAGAGTCTAGAT 60.419 40.741 0.00 0.00 0.00 1.98
4075 6693 6.127225 CCATCCAAAGTCATTCAGAGTCTAGA 60.127 42.308 0.00 0.00 0.00 2.43
4076 6694 6.047870 CCATCCAAAGTCATTCAGAGTCTAG 58.952 44.000 0.00 0.00 0.00 2.43
4077 6695 5.485353 ACCATCCAAAGTCATTCAGAGTCTA 59.515 40.000 0.00 0.00 0.00 2.59
4078 6696 4.288105 ACCATCCAAAGTCATTCAGAGTCT 59.712 41.667 0.00 0.00 0.00 3.24
4079 6697 4.583871 ACCATCCAAAGTCATTCAGAGTC 58.416 43.478 0.00 0.00 0.00 3.36
4081 6699 4.582869 TGACCATCCAAAGTCATTCAGAG 58.417 43.478 0.00 0.00 38.07 3.35
4082 6700 4.639078 TGACCATCCAAAGTCATTCAGA 57.361 40.909 0.00 0.00 38.07 3.27
4083 6701 4.763793 ACTTGACCATCCAAAGTCATTCAG 59.236 41.667 0.00 0.00 42.32 3.02
4084 6702 4.728772 ACTTGACCATCCAAAGTCATTCA 58.271 39.130 0.00 0.00 42.32 2.57
4168 6793 8.257602 AGTTGTTCAAATTAACTTAACCCCAT 57.742 30.769 0.00 0.00 30.98 4.00
4239 6866 2.415090 GCTCAAGCGAAAATGCATCAGT 60.415 45.455 0.00 0.00 37.31 3.41
4240 6867 2.182825 GCTCAAGCGAAAATGCATCAG 58.817 47.619 0.00 0.00 37.31 2.90
4266 6896 1.354705 GACCCAAAGAGGCCTTAACCT 59.645 52.381 6.77 0.00 45.04 3.50
4288 6918 5.853282 GTCGAACCTCATTTTGTTCTTCATG 59.147 40.000 0.00 0.00 38.93 3.07
4368 7001 6.395629 GCTTGTACTGTAGTGACTTTCCATA 58.604 40.000 0.00 0.00 0.00 2.74
4369 7002 5.238583 GCTTGTACTGTAGTGACTTTCCAT 58.761 41.667 0.00 0.00 0.00 3.41
4384 7017 0.470766 TTGGAACGGTGGCTTGTACT 59.529 50.000 0.00 0.00 0.00 2.73
4413 7052 2.474816 GATACAATGTCGGTCTGGAGC 58.525 52.381 0.00 0.00 0.00 4.70
4487 7211 6.584184 CAGACGCATATACATTTCTCACTAGG 59.416 42.308 0.00 0.00 0.00 3.02
4490 7214 6.149129 TCAGACGCATATACATTTCTCACT 57.851 37.500 0.00 0.00 0.00 3.41
4498 7222 7.334421 AGTTTGTTTCTTCAGACGCATATACAT 59.666 33.333 0.00 0.00 0.00 2.29
4501 7225 8.033038 ACTAGTTTGTTTCTTCAGACGCATATA 58.967 33.333 0.00 0.00 0.00 0.86
4532 7256 4.974645 ATATATTCGTTTGCCTCCCAGA 57.025 40.909 0.00 0.00 0.00 3.86
4601 7359 4.157289 TCCGTTTCTAGTACACCTGATGTC 59.843 45.833 0.00 0.00 42.09 3.06
4667 7425 3.375299 CCTCGCTACAGCTTGCTATTTTT 59.625 43.478 0.00 0.00 39.32 1.94
4677 7435 1.271102 GCTATTAGCCTCGCTACAGCT 59.729 52.381 14.71 0.00 41.89 4.24
4681 7439 2.034812 AGTGTGCTATTAGCCTCGCTAC 59.965 50.000 13.01 4.22 41.12 3.58
4687 7445 5.247110 ACATGCTATAGTGTGCTATTAGCCT 59.753 40.000 13.01 5.81 41.51 4.58
4751 7509 4.383052 GTGCGCTATAGTGTGCTATTAGTG 59.617 45.833 9.73 0.00 43.17 2.74
4762 7520 5.223382 AGTATGCTAAAGTGCGCTATAGTG 58.777 41.667 9.73 9.02 35.36 2.74
4763 7521 5.455056 AGTATGCTAAAGTGCGCTATAGT 57.545 39.130 9.73 0.00 35.36 2.12
4764 7522 9.737427 ATTATAGTATGCTAAAGTGCGCTATAG 57.263 33.333 9.73 6.95 33.50 1.31
4771 7529 8.534333 TGTGCTATTATAGTATGCTAAAGTGC 57.466 34.615 0.94 0.00 0.00 4.40
4783 7541 7.660208 CCGTCCCTTAAATTGTGCTATTATAGT 59.340 37.037 0.94 0.00 0.00 2.12
4787 7545 5.587043 CACCGTCCCTTAAATTGTGCTATTA 59.413 40.000 0.00 0.00 0.00 0.98
4788 7546 4.398044 CACCGTCCCTTAAATTGTGCTATT 59.602 41.667 0.00 0.00 0.00 1.73
4790 7548 3.340034 CACCGTCCCTTAAATTGTGCTA 58.660 45.455 0.00 0.00 0.00 3.49
4791 7549 2.159382 CACCGTCCCTTAAATTGTGCT 58.841 47.619 0.00 0.00 0.00 4.40
4792 7550 1.402325 GCACCGTCCCTTAAATTGTGC 60.402 52.381 0.00 0.00 40.49 4.57
4794 7552 2.579410 AGCACCGTCCCTTAAATTGT 57.421 45.000 0.00 0.00 0.00 2.71
4795 7553 4.881850 AGAATAGCACCGTCCCTTAAATTG 59.118 41.667 0.00 0.00 0.00 2.32
4796 7554 4.881850 CAGAATAGCACCGTCCCTTAAATT 59.118 41.667 0.00 0.00 0.00 1.82
4797 7555 4.080526 ACAGAATAGCACCGTCCCTTAAAT 60.081 41.667 0.00 0.00 0.00 1.40
4798 7556 3.262405 ACAGAATAGCACCGTCCCTTAAA 59.738 43.478 0.00 0.00 0.00 1.52
4799 7557 2.835764 ACAGAATAGCACCGTCCCTTAA 59.164 45.455 0.00 0.00 0.00 1.85
4800 7558 2.463752 ACAGAATAGCACCGTCCCTTA 58.536 47.619 0.00 0.00 0.00 2.69
4801 7559 1.276622 ACAGAATAGCACCGTCCCTT 58.723 50.000 0.00 0.00 0.00 3.95
4802 7560 2.154567 TACAGAATAGCACCGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
4803 7561 4.175787 CTATACAGAATAGCACCGTCCC 57.824 50.000 0.00 0.00 31.49 4.46
4827 7585 9.121517 CATTATATGCAAGGAAAAGAAATAGCG 57.878 33.333 0.00 0.00 0.00 4.26
4849 7607 7.501892 TGTGGATGCTCAGTTTATATTGCATTA 59.498 33.333 0.00 0.00 40.58 1.90
4859 7617 4.093743 TCTAGGTGTGGATGCTCAGTTTA 58.906 43.478 0.00 0.00 0.00 2.01
4901 7659 6.767524 AGAGTACAAGACTTATCACTCCAG 57.232 41.667 14.68 0.00 39.06 3.86
4902 7660 7.378966 CAAAGAGTACAAGACTTATCACTCCA 58.621 38.462 14.68 0.00 39.06 3.86
4907 7665 8.190326 TCTTCCAAAGAGTACAAGACTTATCA 57.810 34.615 0.00 0.00 39.06 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.